1. The genome of pest Rhynchophorus ferrugineus reveals gene families important at the plant-beetle interface
- Author
-
Claude Desplan, Biduth Kundu, Naganeeswaran Sudalaimuthuasari, Khaled M. A. Amiri, Khaled M. Hazzouri, David R. Nelson, Johnston J. Spencer, Mohammad Ali Al-Deeb, and Alain Le Mansour
- Subjects
0106 biological sciences ,0301 basic medicine ,Male ,Gene Transfer, Horizontal ,Genome, Insect ,Medicine (miscellaneous) ,Sequence assembly ,Genomics ,Evolutionary ecology ,Receptors, Odorant ,010603 evolutionary biology ,01 natural sciences ,Genome ,Synteny ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Cytochrome P-450 Enzyme System ,Genetics ,Gene family ,Animals ,Gene ,lcsh:QH301-705.5 ,Population Density ,Genetic diversity ,Sex Chromosomes ,biology ,Ecology ,fungi ,food and beverages ,Molecular Sequence Annotation ,Plants ,biology.organism_classification ,Biological Evolution ,Computational biology and bioinformatics ,Rhynchophorus ,030104 developmental biology ,lcsh:Biology (General) ,Multigene Family ,DNA Transposable Elements ,Insect Proteins ,Weevils ,Female ,General Agricultural and Biological Sciences - Abstract
The red palm weevil, Rhynchophorus ferrugineus, infests palm plantations, leading to large financial losses and soil erosion. Pest-host interactions are poorly understood in R. ferrugineus, but the analysis of genetic diversity and pest origins will help advance efforts to eradicate this pest. We sequenced the genome of R. ferrugineus using a combination of paired-end Illumina sequencing (150 bp), Oxford Nanopore long reads, 10X Genomics and synteny analysis to produce an assembly with a scaffold N50 of ~60 Mb. Structural variations showed duplication of detoxifying and insecticide resistance genes (e.g., glutathione S-transferase, P450, Rdl). Furthermore, the evolution of gene families identified those under positive selection including one glycosyl hydrolase (GH16) gene family, which appears to result from horizontal gene transfer. This genome will be a valuable resource to understand insect evolution and behavior and to allow the genetic modification of key genes that will help control this pest., Khaled Michel Hazzouri et al. study the red palm weevil, Rhynchophorus ferrugineus, which causes agricultural damage. They provide a genome assembly and report duplications of detoxifying and insecticide resistance genes as well as genes under positive selection like the glycosyl hydrolyase gene family. Their work provides genetic insights that can help control this pest.
- Published
- 2020
- Full Text
- View/download PDF