1. ONT sequencing identifies a high prevalence of crt sensitive, triple mutant dhfr and single mutant dhps parasites within an ANC population in Nigeria.
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Adegbola AJ, Ndwiga L, Wamae K, Osoti V, Bolaji OO, Bejon P, and Ochola-Oyier LI
- Abstract
Background: Malaria in pregnancy is a major public health issue, particularly among vulnerable populations in malaria-endemic sub-Saharan African countries. To mitigate its risks, WHO recommends sulphadoxine-pyrimethamine (SP) for chemoprevention and artemisinin-based combination therapy (ACT) to treat uncomplicated Plasmodium falciparum malaria. These interventions have helped to alleviate the risk associated with malaria in pregnancy; however, in the context of the emergence of SP- and ACT-resistant P. falciparum , maintained efficacy is under threat. Molecular surveillance is a reliable tool to monitor the emergence of resistance where molecular markers are known. Thus, the objective of the study was to use a multiplexed amplicon Oxford Nanopore sequencing approach to assess the molecular markers for antimalarial resistance among pregnant women in Nigeria., Methods: Dried blood spots (DBS) were collected from pregnant women who received IPTp-SP at the enrollment and follow-up visits. P. falciparum genomic DNA was extracted by the Chelex
® method and Pf 18S qPCR was used to detect parasite DNA in each sample. With nested PCR assays, fragments of Pfdhps , Pfdhfr , Pfmdr1 , Pfcrt , Pfk13 and Pfama1 genes were amplified and multiplexed amplicon-based sequencing was conducted on the minION Oxford Nanopore Technology., Result: In total, 251 pregnant women were enrolled in the study and 457 DBS samples were collected. P. falciparum genomic DNA was detected in 12% (56/457) of the samples, 31 at baseline and the remaining during the follow-up visits. Pfama1 , pfk13 , Pfdhps , Pfdhfr , Pfmdr1 and Pfcrt were successfully sequenced in a single run. Notably, k13 artemisinin resistance mutations were absent, the frequencies of Pfdhfr and Pfdhps SP resistance haplotypes, IRN for pyrimethamine resistance and I SG KA/IA G KA associated with sulphadoxine resistance were 82% (36/44) and 64% (27/42), respectively, and the Pfcrt CV IET resistant haplotype was at approximately 22% (7/32)., Conclusion and Recommendations: Here a multiplexed amplicon-based ONT assay established that triple mutant Pfdfhr -IRN, double mutant Pfdhps -SG haplotypes and the chloroquine sensitive strain were prevalent among pregnant women in Nigeria., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Adegbola, Ndwiga, Wamae, Osoti, Bolaji, Bejon and Ochola-Oyier.)- Published
- 2024
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