1. Enzyme-friendly, mass spectrometry-compatible surfactant for in-solution enzymatic digestion of proteins
- Author
-
Yu, Ying-Qing, Gilar, Martin, Lee, Peter J., Bouvier, Edouard S.P., and Gebler, John C.
- Subjects
Proteins ,Enzymes ,Mass spectrometry -- Usage ,Liquid chromatography -- Usage ,Proteolysis -- Analysis ,Surface active agents ,Acids -- Composition ,Solution (Chemistry) ,Trypsin ,Chemical compounds ,Chemistry, Analytic -- Research ,Chemistry - Abstract
Improved in-solution tryptic digestion of proteins in terms of speed and peptide coverage was achieved with the aid of a novel acid-labile anionic surfactant (ALS). Unlike SDS, ALS solubilizes proteins without inhibiting trypsin or other common endopeptidases activity. Trypsin activity was evaluated in the presence of various denaturants; little or no decrease in proteolytic activity was observed in 0.1-1% ALS solutions (w/v). Sample preparation prior to mass spectrometry and liquid chromatography analysis consists of sample acidification. ALS degrades rapidly at low-pH conditions, which eliminates surfactant-caused interference with analysis. Described methodology combines the advantages of protein solubilization, rapid digestion, high peptide coverages, and easy sample preparation for mass spectrometry and liquid chromatography analyses.
- Published
- 2003