320 results on '"Abnormal protein"'
Search Results
2. Les mécanismes de régulation de la glycosylation
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Sophie Groux, Sumeyye Cavdarli, François Foulquier, and Philippe Delannoy
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0303 health sciences ,Glycosylation ,Cellular metabolism ,biology ,Endoplasmic reticulum ,Transporter ,General Medicine ,Golgi apparatus ,Abnormal protein ,General Biochemistry, Genetics and Molecular Biology ,3. Good health ,Cell biology ,03 medical and health sciences ,chemistry.chemical_compound ,symbols.namesake ,0302 clinical medicine ,chemistry ,030220 oncology & carcinogenesis ,Glycosyltransferase ,biology.protein ,symbols ,Lipid glycosylation ,030304 developmental biology - Abstract
La glycosylation est l’une des modifications essentielles des protéines et des lipides. Elle s’effectue principalement dans le réticulum endoplasmique et l’appareil de Golgi et fait appel à une machinerie moléculaire spécifique, associant plusieurs centaines de glycosyltransférases, de glycosidases, de transporteurs et de protéines régulatrices. Des modifications de la glycosylation sont retrouvées dans certaines maladies, notamment dans les cancers. Ces altérations peuvent affecter toutes les formes de glycosylation réticulaires et/ou golgiennes, et conduire à des dysfonctionnements du métabolisme cellulaire. Dans cette revue, nous présentons l’état actuel des connaissances des mécanismes de la glycosylation. Nous illustrerons, au travers d’exemples représentatifs, comment l’altération de certains de ces mécanismes de régulation peut affecter les différentes formes de glycosylation des protéines et des lipides et participer au développement des cancers.
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- 2021
3. The Proteasome: Source and a Target of Oxidative Stress?
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Halliwell, Barry, Stefanis, Leonidas, editor, and Keller, Jeffrey N., editor
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- 2006
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4. Circular RNAs: Novel target of diabetic retinopathy
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Hong-Yu Kuang and Huan-Ran Zhou
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Diabetic Retinopathy ,Blindness ,business.industry ,Endocrinology, Diabetes and Metabolism ,Treatment method ,030209 endocrinology & metabolism ,RNA, Circular ,Diabetic retinopathy ,medicine.disease ,Bioinformatics ,Abnormal protein ,Epigenesis, Genetic ,Pathogenesis ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Diabetes mellitus ,Diabetes Mellitus ,Quality of Life ,medicine ,Humans ,Epigenetics ,business ,Clinical treatment ,Signal Transduction - Abstract
In diabetic patients, diabetic retinopathy (DR) is the leading cause of blindness and seriously affects the quality of life. However, current treatment methods of DR are not satisfactory. Advances have been made in understanding abnormal protein interactions and signaling pathways in DR pathology, but little is known about epigenetic regulation. Non-coding RNAs, such as circular RNAs (circRNAs), have been shown to be associated with DR. In this review, we summarized the function of circRNAs and indicated their roles in the pathogenesis of DR, which may provide new therapeutic targets for clinical treatment.
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- 2021
5. Adapting the proteostasis capacity to sustain brain healthspan
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Claudio Hetz
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Stress sensors ,Brain ,Biology ,Adaptation, Physiological ,Abnormal protein ,General Biochemistry, Genetics and Molecular Biology ,Cytosol ,Mental Health ,Proteostasis ,Stress, Physiological ,Motor processes ,Animals ,Humans ,Functional significance ,Signal transduction ,Neuroscience ,Brain function ,Signal Transduction - Abstract
Sustaining neuronal proteostasis during the course of our life is a central aspect required for brain function. The dynamic nature of synaptic composition and abundance is a requisite to drive cognitive and motor processes involving a tight control of many aspects of protein biosynthesis and degradation. Through the concerted action of specialized stress sensors, the proteostasis network monitors and limits the accumulation of damaged, misfolded, or aggregated proteins. These stress pathways signal to the cytosol and nucleus to reprogram gene expression, enabling adaptive programs to recover cell function. During aging, the activity of the proteostasis network declines, which may increase the risk of accumulating abnormal protein aggregates, a hallmark of most neurodegenerative diseases. Here, I discuss emerging concepts illustrating the functional significance of adaptive signaling pathways to normal brain physiology and their contribution to age-related disorders. Pharmacological and gene therapy strategies to intervene and boost proteostasis are expected to extend brain healthspan and ameliorate disease states.
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- 2021
6. Current and future applications of induced pluripotent stem cell-based models to study pathological proteins in neurodegenerative disorders
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Aurelie de Rus Jacquet, Francesca Cicchetti, Melanie Alpaugh, and Hélèna L Denis
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0301 basic medicine ,Review Article ,Biology ,Abnormal protein ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Psychiatry and Mental health ,030104 developmental biology ,0302 clinical medicine ,Induced pluripotent stem cell ,Molecular Biology ,Pathological ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Neurodegenerative disorders emerge from the failure of intricate cellular mechanisms, which ultimately lead to the loss of vulnerable neuronal populations. Research conducted across several laboratories has now provided compelling evidence that pathogenic proteins can also contribute to non-cell autonomous toxicity in several neurodegenerative contexts, including Alzheimer’s, Parkinson’s, and Huntington’s diseases as well as Amyotrophic Lateral Sclerosis. Given the nearly ubiquitous nature of abnormal protein accumulation in such disorders, elucidating the mechanisms and routes underlying these processes is essential to the development of effective treatments. To this end, physiologically relevant human in vitro models are critical to understand the processes surrounding uptake, release and nucleation under physiological or pathological conditions. This review explores the use of human-induced pluripotent stem cells (iPSCs) to study prion-like protein propagation in neurodegenerative diseases, discusses advantages and limitations of this model, and presents emerging technologies that, combined with the use of iPSC-based models, will provide powerful model systems to propel fundamental research forward.
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- 2021
7. Insights in the structural understanding of amyloidogenicity and mutation-led conformational dynamics of amyloid beta (Aβ) through molecular dynamics simulations and principal component analysis
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Saleem Iqbal, Krishnasamy Gunasekaran, Sriram Srinivasa Raghavan, and Niraikulam Ayyadurai
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Amyloid beta ,030303 biophysics ,Peptide ,Molecular Dynamics Simulation ,Abnormal protein ,03 medical and health sciences ,Molecular dynamics ,Alzheimer Disease ,Structural Biology ,medicine ,Humans ,Molecular Biology ,chemistry.chemical_classification ,Principal Component Analysis ,0303 health sciences ,Amyloid beta-Peptides ,biology ,Chemistry ,Nervous tissue ,Dynamics (mechanics) ,General Medicine ,Peptide Fragments ,Cell biology ,medicine.anatomical_structure ,Mutation ,Mutation (genetic algorithm) ,Principal component analysis ,biology.protein - Abstract
Abnormal protein aggregation in the nervous tissue leads to several neurodegenerative disorders like Alzheimer's disease (AD). In AD, accumulation of the amyloid beta (Aβ) peptide is proposed to be an early important event in pathogenesis. Significant research efforts are devoted so as to understand the Aβ misfolding and aggregation. Molecular dynamics (MD) simulations complement experiments and provide structural information at the atomic level with dynamics without facing the same experimental limitations. Artificial missense mutations are employed experimentally and computationally for providing insights into the structure-function relationships of amyloid-β in relation to the pathologies of AD. Present work describes the MD simulations for 100 ns so as to probe the structural and conformational dynamics of Aβ1-42 assemblies and its mutants. Essential dynamics analysis with respect to conformational deviation of
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- 2021
8. Les myélinosomes : une nouvelle voie du contrôle de qualité des protéines
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Anne-Sophie Neyroud, Nicolas Bourmeyster, Célia Ravel, Emile Béré, Marina Yefimova, Sechenov Institute of Evolutionary Physiology and Biochemistry, Russian Academy of Sciences [Moscow] (RAS), Institut de recherche en santé, environnement et travail (Irset), Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )-Institut National de la Santé et de la Recherche Médicale (INSERM)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Université d'Angers (UA), Service de Gynécologie et Obstétrique [Rennes] = Gynaecology [Rennes], CHU Pontchaillou [Rennes], ImageUP (Plateforme d'Imagerie de l'Université de Poitiers), Université de Poitiers, Centre hospitalier universitaire de Poitiers (CHU Poitiers), Signalisation et Transports Ioniques Membranaires (STIM), Université de Poitiers-Université de Tours (UT)-Centre National de la Recherche Scientifique (CNRS), Université d'Angers (UA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), Université de Poitiers-Université de Tours-Centre National de la Recherche Scientifique (CNRS), Génétique Diversité et Ecophysiologie des Céréales - Clermont Auvergne (GDEC), Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne (UCA), Structures tissulaires et interactions moléculaires (STIM), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Université d'Angers (UA)-Université de Rennes (UR)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique )
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0301 basic medicine ,[SDV]Life Sciences [q-bio] ,Vesicle ,Mutant ,Cell ,Autophagy ,General Medicine ,Biology ,Abnormal protein ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Proteostasis ,medicine.anatomical_structure ,Proteasome ,030220 oncology & carcinogenesis ,Myelin sheath ,medicine - Abstract
International audience; Deux voies de dégradation des protéines mal repliées sont classiquement décrites : la voie du protéasome et la voie de l’autophagie. Nous décrivons ici une nouvelle voie de protéostase cellulaire ne dégradant pas la protéine anormale mais l’expulsant hors de la cellule grâce à des nanovésicules appelées myélinosomes. Ces myélinosomes sont produits par la cellule dans des situations pathologiques ou de stress en lien avec des facteurs génétiques ou environnementaux. Sur le plan morphologique, les myélinosomes sont caractérisés par des membranes osmiophiles denses aux électrons dont l’arrangement empilé est semblable à celui de la myéline et présente jusqu’à 30 feuillets selon le type de cellule. Dans deux modèles, au moins, de maladies génétiques (la maladie de Huntington et la mucoviscidose), les myélinosomes sont importants pour éliminer les protéines mutées par un processus sécrétoire inhabituel, évitant ainsi leur agrégation dans les cellules.
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- 2020
9. Alpha1-Antitrypsin Deficiency
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Kris V. Kowdley and Vignan Manne
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Liver injury ,medicine.medical_specialty ,Cirrhosis ,Hepatology ,business.industry ,Disease ,Chronic liver disease ,medicine.disease ,Abnormal protein ,Gastroenterology ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Fibrosis ,030220 oncology & carcinogenesis ,Internal medicine ,Medicine ,030211 gastroenterology & hepatology ,Allele ,business - Abstract
Alpha1-antitrypsin deficiency (A1ATD) is an inherited cause of chronic liver disease. It is inherited in an autosomal codominant pattern with each inherited allele expressed in the formation of the final protein, which is primarily produced in hepatocytes. The disease usually occurs in pediatric and elderly populations. The disease occurs with the accumulation of abnormal protein polymers within hepatocytes that can induce liver injury and fibrosis. It is a commonly under-recognized and underdiagnosed condition. Patients diagnosed with the disease should be regularly monitored for the development of liver disease. Liver transplant is of proven benefit in A1ATD liver disease.
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- 2020
10. Involvement of molecular chaperones in intracellular protein breakdown
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Sherman, M. Y. S., Goldberg, A. L., Feige, U., editor, Yahara, I., editor, Morimoto, R. I., editor, and Polla, B. S., editor
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- 1996
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11. Roles for Energy-Dependent Proteases in Regulatory Cascades
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Gottesman, Susan, Lin, E. C. C., and Lynch, A. Simon
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- 1996
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12. Ubiquitin-dependent protein degradation
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Jentsch, Stefan, Hauser, Hans-Peter, Heinlein, Ruth, Jungmann, Joern, Schlenker, Stephan, Seufert, Wolfgang, Sommer, Thomas, Springer, Sebastian, Brown, Alistair J. P., editor, Tuite, Mick F., editor, and McCarthy, John E. G., editor
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- 1993
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13. The mechanism and functions of ATP-dependent proteases in bacterial and animal cells
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Goldberg, Alfred L., Christen, P., and Hofmann, E.
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- 1993
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14. Ubiquitin-Conjugating Enzymes Mediate Essential Functions of the Stress Response
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Jentsch, S., Seufert, W., Jungmann, J., Klingner, B., Maresca, Bruno, editor, and Lindquist, Susan, editor
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- 1991
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15. Spatiotemporal dynamic regulation of membraneless organelles by chaperone networks
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Dan Li and Cong Liu
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Biomolecular Condensates ,Organelles ,biology ,Chaperone (protein) ,Organelle ,biology.protein ,Humans ,RNA ,Cell Biology ,Protein Homeostasis ,Abnormal protein ,Cell biology ,Molecular Chaperones - Abstract
Membraneless organelles (MLOs) present as a condensed metastable phase of different proteins and RNAs organized via liquid–liquid phase separation. Recent evidence suggests the extensive incorporation of molecular chaperones into the dynamic assembly of MLOs, where different chaperones coordinate to spatiotemporally maintain the protein homeostasis and avoid abnormal protein aggregation.
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- 2021
16. Interference in Ion-Selective Electrodes Due to Proteins and Lipids
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Sudip Kumar Datta and Parul Chopra
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Chromatography ,Chemistry ,Point-of-Care Systems ,Sodium ,Humans ,General Medicine ,Interference (wave propagation) ,Abnormal protein ,Lipids ,Ion-Selective Electrodes - Abstract
Background Ion-selective electrodes (ISE) have become the mainstay of electrolyte measurements in the clinical laboratory. In most automated analyzers used in large diagnostic laboratories, indirect ISE (iISE) -based electrolyte estimation is done; whereas direct ISE (dISE) -based equipment are mostly used in blood gas analyzers and in the point-of-care (PoC) setting. Content Both the techniques, iISE as well as dISE, are scientifically robust; however, the results are often not interchangeable. Discrepancy happens between the two commonly due to interferences that affect the two measuring principles differently. Over the last decade, several studies have reported discrepancies between dISE and iISE arising due to abnormal protein and lipid contents in the sample. Summary The present review endeavors to consolidate the knowledge accumulated in relation to interferences due to abnormal protein and lipid contents in sample with the principal focus resting on probable solutions thereof.
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- 2021
17. Active Oxygen Species and Heat Shock Protein Induction
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Burdon, Roy H., Gill, Vera, Evans, Catherine Rice, Schlesinger, Milton J., editor, Santoro, M. Gabriella, editor, and Garaci, Enrico, editor
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- 1990
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18. Advances in the development of imaging probes and aggregation inhibitors for alpha-synuclein
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Ronald J. Quinn, Mingming Xu, Hai-Yan Zhang, Philip Ryan, George D. Mellick, and Santosh Rudrawar
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0301 basic medicine ,Parkinson's disease ,Neurite ,alpha-synuclein ,Review Article ,medicine.disease_cause ,Diagnostic tools ,aggregation inhibitors ,Abnormal protein ,Pathogenesis ,03 medical and health sciences ,chemistry.chemical_compound ,Protein Aggregates ,0302 clinical medicine ,medicine ,Animals ,Humans ,Pharmacology (medical) ,thioflavin-T ,mass spectrometry ,Fluorescent Dyes ,Pharmacology ,Alpha-synuclein ,Flavonoids ,Tomography, Emission-Computed, Single-Photon ,Neurodegeneration ,Neurodegenerative Diseases ,General Medicine ,medicine.disease ,nervous system diseases ,030104 developmental biology ,chemistry ,nervous system ,imaging probes ,030220 oncology & carcinogenesis ,Positron-Emission Tomography ,Parkinson’s disease ,Neuroscience ,Oxidative stress - Abstract
Abnormal protein aggregation has been linked to many neurodegenerative diseases, including Parkinson’s disease (PD). The main pathological hallmark of PD is the formation of Lewy bodies (LBs) and Lewy neurites, both of which contain the presynaptic protein alpha-synuclein (α-syn). Under normal conditions, native α-syn exists in a soluble unfolded state but undergoes misfolding and aggregation into toxic aggregates under pathological conditions. Toxic α-syn species, especially oligomers, can cause oxidative stress, membrane penetration, synaptic and mitochondrial dysfunction, as well as other damage, leading to neuronal death and eventually neurodegeneration. Early diagnosis and treatments targeting PD pathogenesis are urgently needed. Given its critical role in PD, α-syn is an attractive target for the development of both diagnostic tools and effective therapeutics. This review summarizes the progress toward discovering imaging probes and aggregation inhibitors for α-syn. Relevant strategies and techniques in the discovery of α-syn-targeted drugs are also discussed.
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- 2019
19. Parkinson’s disease is a type of amyloidosis featuring accumulation of amyloid fibrils of α-synuclein
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Chi-Jing Choong, Hideki Hayakawa, Yuji Goto, Hideki Mochizuki, Harutoshi Fujimura, Naoto Yagi, Katsuya Araki, Yoshitaka Nagai, and Koki Aoyama
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0301 basic medicine ,Amyloid ,Pathology ,medicine.medical_specialty ,Medical Sciences ,Parkinson's disease ,Plaque, Amyloid ,Abnormal protein ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Humans ,cross-β structure ,Multidisciplinary ,Chemistry ,Amyloidosis ,Brain ,Parkinson Disease ,Biological Sciences ,Amyloid fibril ,medicine.disease ,X-ray diffraction ,Disease Models, Animal ,Lewy body ,030104 developmental biology ,alpha-Synuclein ,Parkinson’s disease ,Lewy Bodies ,α synuclein ,Disease Susceptibility ,030217 neurology & neurosurgery - Abstract
Significance Lewy bodies (LBs), which mainly consist of α-syn, are neuropathological hallmarks of patients with Parkinson’s disease (PD). Recently, it has been reported that aggregates of α-syn with cross-β structures are capable of propagating within the brain in a prionlike manner. However, there is still no evidence that such propagation occurs in the patient’s brain. Here, we examined LBs in thin sections of autopsy brains of patients with PD using microbeam X-ray diffraction (XRD) and confirmed that aggregates of α-syn with a cross-β structure exist in brains of PD patients. Our finding supports the concept that PD is a type of amyloidosis, a disease featuring the accumulation and propagation of amyloid fibrils of α-syn., Many neurodegenerative diseases are characterized by the accumulation of abnormal protein aggregates in the brain. In Parkinson’s disease (PD), α-synuclein (α-syn) forms such aggregates called Lewy bodies (LBs). Recently, it has been reported that aggregates of α-syn with a cross-β structure are capable of propagating within the brain in a prionlike manner. However, the presence of cross-β sheet-rich aggregates in LBs has not been experimentally demonstrated so far. Here, we examined LBs in thin sections of autopsy brains of patients with PD using microbeam X-ray diffraction (XRD) and found that some of them gave a diffraction pattern typical of a cross-β structure. This result confirms that LBs in the brain of PD patients contain amyloid fibrils with a cross-β structure and supports the validity of in vitro propagation experiments using artificially formed amyloid fibrils of α-syn. Notably, our finding supports the concept that PD is a type of amyloidosis, a disease featuring the accumulation of amyloid fibrils of α-syn.
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- 2019
20. A new perspective for advanced positron emission tomography-based molecular imaging in neurodegenerative proteinopathies
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Juha Rinne, Francisco R. López-Picón, Elena Rodriguez-Vieitez, Rainer Hinz, Leonardo Iaccarino, Rosa Maria Moresco, Agneta Nordberg, Marie Joao Santiago-Ribeiro, Alexander Gerhard, Gitte M. Knudsen, Karl Herholz, Albert D. Windhorst, Matthias M. Herth, Adriaan A. Lammertsma, Johnny Vercouillie, Sabina Pappatà, Christer Halldin, Oskar Hansson, David J. Brooks, Anthony Gee, Koen Van Laere, Bertrand Kuhnast, Ronald Boellaard, Michel Bottlaender, Federico Turkheimer, Andrea Varrone, Alexandra Winkeler, Sylvie Chalon, Andreas H. Jacobs, Daniela Perani, Michael A. Carroll, Paul Edison, Radiology and nuclear medicine, Amsterdam Neuroscience - Brain Imaging, ACS - Heart failure & arrhythmias, Basic and Translational Research and Imaging Methodology Development in Groningen (BRIDGE), Chalon, Sylvie, VU University Medical Center [Amsterdam], Univ Groningen, Univ Med Ctr Groningen, Lund University [Lund], Perani, D, Iaccarino, L, Lammertsma, Aa, Windhorst, Ad, Edison, P, Boellaard, R, Hansson, O, Nordberg, A, Jacobs, A, on behalf of all partners of the IMBI, Project, Lammertsma, A, Windhorst, A, Bottlaender, M, Brooks, D, Carroll, M, Chalon, S, Gee, A, Gerhard, A, Halldin, C, Herholz, K, Herth, M, Hinz, R, Knudsen, G, Kuhnast, B, Lopez-Picon, F, Moresco, R, Pappata, S, Rinne, J, Rodriguez-Vieitez, E, Santiago-Ribeiro, M, Turkheimer, F, Van Laere, K, Varrone, A, Vercouillie, J, and Winkeler, A
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0301 basic medicine ,18-KDA TRANSLOCATOR PROTEIN ,MILD COGNITIVE IMPAIRMENT ,Epidemiology ,PET TRACER F-18-AV-1451 ,[SDV]Life Sciences [q-bio] ,Diagnostic tools ,Abnormal protein ,AMYOTROPHIC-LATERAL-SCLEROSIS ,chemistry.chemical_compound ,0302 clinical medicine ,Neuroinflammation ,Medicine ,TAU-PET ,ComputingMilieux_MISCELLANEOUS ,IN-VIVO ,medicine.diagnostic_test ,Health Policy ,Amyloid, Neuroinflammation, PET molecular imaging, Protheinopathies, Radiotracers, Tau ,Neurodegenerative Diseases ,Frontotemporal lobar degeneration ,ALZHEIMERS ASSOCIATION WORKGROUPS ,3. Good health ,[SDV] Life Sciences [q-bio] ,Psychiatry and Mental health ,Radiotracers ,Positron emission tomography ,Protheinopathie ,Specific protein ,Amyloid ,PET molecular imaging ,Neuroimaging ,Neuropathology ,CEREBRAL AMYLOID ANGIOPATHY ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Humans ,Proteostasis Deficiencies ,FRONTOTEMPORAL LOBAR DEGENERATION ,Radiotracer ,business.industry ,PITTSBURGH COMPOUND-B ,medicine.disease ,030104 developmental biology ,chemistry ,Positron-Emission Tomography ,Protheinopathies ,Neurology (clinical) ,Geriatrics and Gerontology ,Molecular imaging ,Tau ,business ,Pittsburgh compound B ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Recent studies in neurodegenerative conditions have increasingly highlighted that the same neuropathology can trigger different clinical phenotypes or, vice-versa, that similar phenotypes can be triggered by different neuropathologies. This evidence has called for the adoption of a pathology spectrum-based approach to study neurodegenerative proteinopathies. These conditions share brain deposition of abnormal protein aggregates, leading to aberrant biochemical, metabolic, functional, and structural changes. Positron emission tomography (PET) is a well-recognized and unique tool for the in vivo assessment of brain neuropathology, and novel PET techniques are emerging for the study of specific protein species. Today, key applications of PET range from early research and clinical diagnostic tools to their use in clinical trials for both participants screening and outcome evaluation. This position article critically reviews the role of distinct PET molecular tracers for different neurodegenerative proteinopathies, highlighting their strengths, weaknesses, and opportunities, with special emphasis on methodological challenges and future applications. (C) 2019 the Alzheimer's Association. Published by Elsevier Inc. All rights reserved.
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- 2019
21. Tumor Abnormal Protein Detection is An Effective Screening Method for Solid Malignancies
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Changjun Tian, Linfang Li, Hui Fan, Zhihui Zhang, Bai Li, shuhua wu, Lin Zhang, Mingxin Gao, and Yongsheng Zhang
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Text mining ,business.industry ,Screening method ,Cancer research ,Medicine ,business ,Abnormal protein - Abstract
Background: Detection of tumor abnormal protein (TAP) is a recently developed but not widely used method for screening malignancies. This study is aimed to assess the ability of TAP level in distinguishing solid malignancies. Methods: The TAP levels were compared between malignancies and benign disease patients, and the distinguish ability were evaluated by receiver operating characteristic (ROC) curve analysis. We further analyzed TAP levels in physical examination populations with different genders and age, and compared clinical parameters in TAP positive and negative groups. Results: We found that TAP levels were getting higher from benign to precancerous lesions and to malignancies, and TAP levels were decreased after tumor resection. ROC curve analysis showed that TAP levels might aid to distinguish between malignancies and benign diseases. In the physical examination populations, the positive ratio of TAP was 3.7% (4.6% to female and 3.1% to male), and the TAP levels were higher in female. The TAP levels in populations above 60 year age were higher than those in less than 60 years, which increased with age. The hemoglobin levels were lower in TAP positive populations. Conclusion: TAP was an effective biomarker of screening and following-up for malignancies. There may be some potential links between TAP and hemoglobin, which deserve further studies.
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- 2021
22. The Evolution of the Hallmarks of Aging
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Maël Lemoine
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Geroscience ,geroscience ,Mechanism (biology) ,Somatic cell ,aging ,unicellular aging ,Review ,QH426-470 ,Biology ,Evolution of ageing ,Abnormal protein ,bilaterians ,Multicellular organism ,Order (biology) ,metacellular aging ,Evolutionary biology ,evolution ,Genetics ,Molecular Medicine ,Stem cell ,Genetics (clinical) - Abstract
The evolutionary theory of aging has set the foundations for a comprehensive understanding of aging. The biology of aging has listed and described the “hallmarks of aging,” i.e., cellular and molecular mechanisms involved in human aging. The present paper is the first to infer the order of appearance of the hallmarks of bilaterian and thereby human aging throughout evolution from their presence in progressively narrower clades. Its first result is that all organisms, even non-senescent, have to deal with at least one mechanism of aging – the progressive accumulation of misfolded or unstable proteins. Due to their cumulation, these mechanisms are called “layers of aging.” A difference should be made between the first four layers of unicellular aging, present in some unicellular organisms and in all multicellular opisthokonts, that stem and strike “from the inside” of individual cells and span from increasingly abnormal protein folding to deregulated nutrient sensing, and the last four layers of metacellular aging, progressively appearing in metazoans, that strike the cells of a multicellular organism “from the outside,” i.e., because of other cells, and span from transcriptional alterations to the disruption of intercellular communication. The evolution of metazoans and eumetazoans probably solved the problem of aging along with the problem of unicellular aging. However, metacellular aging originates in the mechanisms by which the effects of unicellular aging are kept under control – e.g., the exhaustion of stem cells that contribute to replace damaged somatic cells. In bilaterians, additional functions have taken a toll on generally useless potentially limited lifespan to increase the fitness of organisms at the price of a progressively less efficient containment of the damage of unicellular aging. In the end, this picture suggests that geroscience should be more efficient in targeting conditions of metacellular aging rather than unicellular aging itself.
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- 2021
23. The mesenchymal stem cells will break down and remove the abnormal proteins that have become insoluble and deposited
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Kazuo Shigematsu and Hisakazu Yamagishi
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business.industry ,Mesenchymal stem cell ,Medicine ,Mesenchymal Stem Cells ,General Medicine ,Stem cell ,business ,Mesenchymal Stem Cell Transplantation ,Regenerative Medicine ,Abnormal protein ,Regenerative medicine ,Cell biology - Published
- 2021
24. Early Study of Tumor Abnormal Protein in Gastric Adenocarcinoma
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Xiaoyu Wang, Ming Zhang, and Zhenghua Wang
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0301 basic medicine ,medicine.medical_specialty ,Population ,Gastroenterology ,Abnormal protein ,OncoTargets and Therapy ,03 medical and health sciences ,chemistry.chemical_compound ,Gastric adenocarcinoma ,0302 clinical medicine ,Carcinoembryonic antigen ,coagulation function ,uric acid ,Internal medicine ,medicine ,blood glucose ,Pharmacology (medical) ,education ,Original Research ,tumor abnormal protein ,education.field_of_study ,biology ,Coagulation function ,business.industry ,Significant difference ,030104 developmental biology ,Oncology ,chemistry ,Coagulation ,tumor markers ,030220 oncology & carcinogenesis ,biology.protein ,Uric acid ,gastric adenocarcinoma ,business - Abstract
Ming Zhang,* Xiaoyu Wang,* Zhenghua Wang Department of Gastrointestinal Oncology (Ward I), The First Affiliated Hospital of Jinzhou Medical University, Jinzhou, Liaoning, 121000, People’s Republic of China*These authors contributed equally to this workCorrespondence: Zhenghua WangDepartment of Gastrointestinal Oncology (Ward I), The First Affiliated Hospital of Jinzhou Medical University, No. 2, Section 5, Renmin Street, Jinzhou, Liaoning, 121000, People’s Republic of ChinaEmail wangzhenghua1977@163.comObjective: To study the correlation between tumor abnormal protein (TAP) and tumor markers, blood glucose, uric acid and coagulation function in gastric adenocarcinoma and to evaluate the clinical application of TAP in the diagnosis of gastric adenocarcinoma.Methods: A total of 34 nontumor patients and 95 gastric adenocarcinoma patients admitted to the First Affiliated Hospital of Jinzhou Medical University were enrolled in this study. Fresh blood from patients’ fingertips was collected, all blood samples were examined with TAP testing kit, and then searched and measured the condensed particulate matter.Results: The comparison of TAP between nontumor patients and gastric adenocarcinoma patients was statistically significant (P< 0.05). Bivariate correlation analysis was conducted between TAP and other related tumor markers (alpha-fetoprotein, carcinoembryonic antigen, carbohydrate antigen 19– 9 (CA199), carbohydrate antigen 72– 4 (CA72-4)), blood glucose, uric acid, and coagulation function-related indicators, and the results showed that the correlation between TAP and CA199, CA72-4, and activated partial prothrombin time was statistically significant. In addition, according to the analysis results, there was no significant difference among TAP and age, height and weight in the tumor population and the nontumor population.Conclusion: TAP can be used for the screening and diagnosis of gastric adenocarcinoma, and the effect of TAP combined with other indicators is more significant than TAP alone.Keywords: tumor abnormal protein, gastric adenocarcinoma, tumor markers, blood glucose, uric acid, coagulation function
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- 2021
25. Spinocerebellar Ataxia-Type 2
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Bhidayasiri, Roongroj, Tarsy, Daniel, Bhidayasiri, Roongroj, and Tarsy, Daniel
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- 2012
- Full Text
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26. Poly(Adp-Ribose) Drives Condensation of Fus Via a Transient Interaction
- Author
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Kevin Rhine, James Shorter, Sophie Skanchy, Sua Myong, Charlotte M. Fare, Joseph Yoniles, Laura R. Ganser, Anthony K.L. Leung, Morgan Dasovich, and Mohsen Badiee
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,Enzyme ,chemistry ,Structural similarity ,Condensation ,Ribose ,Biophysics ,RNA ,Abnormal protein ,Volume concentration - Abstract
Poly(ADP-ribose) (PAR) is an RNA-like polymer that regulates an increasing number of biological processes. Dysregulation of PAR is implicated in neurodegenerative diseases characterized by abnormal protein aggregation, including Amyotrophic Lateral Sclerosis (ALS). PAR forms condensates with FUS, an RNA-binding protein linked with ALS, through an unknown mechanism. Here, we demonstrate that a strikingly low concentration of PAR (1 nM) is sufficient to trigger condensation of FUS near its physiological concentration (1 µM), which is three orders of magnitude lower than the concentration at which RNA induces condensation (1 µM). Unlike RNA, which associates with FUS stably, PAR interacts with FUS transiently, triggering FUS to oligomerize into condensates. Moreover, inhibition of a major PAR-synthesizing enzyme, PARP5a, diminishes FUS condensation in cells. Despite their structural similarity, PAR and RNA co-condense with FUS, driven by disparate modes of interaction with FUS. Thus, we uncover a mechanism by which PAR potently seeds FUS condensation.
- Published
- 2021
27. Applications of magnetic particle imaging in the dementias
- Author
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Andre Bongers, Nady Braidy, Wei Wen, and Perminder S. Sachdev
- Subjects
Vascular imaging ,Computer science ,Magnetic Phenomena ,Abnormal protein ,Magnetic Resonance Imaging ,030227 psychiatry ,03 medical and health sciences ,Psychiatry and Mental health ,0302 clinical medicine ,Magnetic particle imaging ,In vivo ,Alzheimer Disease ,Magnetic nanoparticles ,Humans ,Nanoparticles ,Dementia ,030217 neurology & neurosurgery ,Biomedical engineering ,Dementia research - Abstract
Purpose of review This review discusses recent developments in the application of magnetic particle imaging (MPI) to dementia research. Recent findings MPI is a tracer method that is currently in the preclinical development stage. It provides high sensitivity for the detection and localization of magnetic nanoparticles with very high spatial and temporal resolution and a similar application spectrum as PET. Unlike MRI, the MPI signal is not contaminated by background signal from tissues and is highly quantifiable in terms of local tracer concentrations. These properties make the technology ideally suited for localization of specific targets or quantification of vascular parameters. MPI uses magnetic nanoparticles which can be modified by various coatings, and by adding ligands (i.e. peptides or antibodies) for specific targeting. This makes MPI an attractive tool for the potential detection of abnormal protein deposits, such as Aβ plaques, with greater specificity than MRI. Neural stem cells can also be labelled with these nanoparticles ex vivo to monitor their migration in vivo. Summary The capabilities of MPI opens the potential for several applications of MPI in neurocognitive disorders, including vascular imaging, detection of amyloid plaques and potentially other pathological hallmarks of Alzheimer's disease and stem-cell tracking.
- Published
- 2020
28. The Role of APP O-Glycosylation in Alzheimer’s Disease
- Author
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Hiroshi Manya and Keiko Akasaka-Manya
- Subjects
0301 basic medicine ,Glycan ,Glycosylation ,O-glycan ,lcsh:QR1-502 ,Disease ,Cleavage (embryo) ,Biochemistry ,Abnormal protein ,lcsh:Microbiology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,mental disorders ,medicine ,Dementia ,Senile plaques ,Molecular Biology ,ppGalNAc-T ,biology ,medicine.disease ,Cell biology ,carbohydrates (lipids) ,030104 developmental biology ,chemistry ,Protein processing ,biology.protein ,APP ,030217 neurology & neurosurgery - Abstract
The number of people with dementia is increasing rapidly due to the increase in the aging population. Alzheimer’s disease (AD) is a type of neurodegenerative dementia caused by the accumulation of abnormal proteins. Genetic mutations, smoking, and several other factors have been reported as causes of AD, but alterations in glycans have recently been demonstrated to play a role in AD. Amyloid-β (Aβ), a cleaved fragment of APP, is the source of senile plaque, a pathological feature of AD. APP has been reported to undergo N- and O-glycosylation, and several Polypeptide N-acetylgalactosaminyltransferases (ppGalNAc-Ts) have been shown to have catalytic activity for the transfer of GalNAc to APP. Since O-glycosylation in the proximity of a cleavage site in many proteins has been reported to be involved in protein processing, O-glycans may affect the cleavage of APP during the Aβ production process. In this report, we describe new findings on the O-glycosylation of APP and Aβ production.
- Published
- 2020
29. Suspecting Cardiac Amyloidosis in Congestive Heart Failure
- Author
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Alaa Mohamed, Iyiad Alabdul Razzak, Emad U Alatassi, Anas Mahmoud, and Salim Habib
- Subjects
amyloidosis ,medicine.medical_specialty ,business.industry ,Amyloidosis ,Cardiology ,General Engineering ,transthyretin amyloid cardiomyopathy ,030204 cardiovascular system & hematology ,medicine.disease ,Abnormal protein ,Multisystem disease ,03 medical and health sciences ,0302 clinical medicine ,Amyloid deposition ,Cardiac amyloidosis ,Internal medicine ,Heart failure ,Internal Medicine ,Medicine ,business ,030217 neurology & neurosurgery - Abstract
Amyloidosis is a rare multisystem disease due to deposition of abnormal protein fragments, and cardiac amyloidosis is progressive and difficult to diagnose due to its subtle and non-specific symptoms unless the physician maintains a high degree of suspicion. This case report focuses on amyloid deposition in the heart of an 84-year-old woman who presented with symptoms of uncompensated heart failure.
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- 2020
30. Biophysical processes underlying cross-seeding in amyloid aggregation and implications in amyloid pathology
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Young-Ho Lee, Yuxi Lin, Jie Zheng, Magdalena I. Ivanova, and Ayyalusamy Ramamoorthy
- Subjects
0303 health sciences ,Amyloid pathology ,Amyloid ,Chemistry ,030303 biophysics ,Organic Chemistry ,Biophysics ,food and beverages ,Amylin ,Biochemistry ,Abnormal protein ,Biophysical Phenomena ,Article ,Cell biology ,Review article ,03 medical and health sciences ,Protein Aggregates ,mental disorders ,Amyloid aggregation ,Biophysical Process ,Humans ,Enhancer ,030304 developmental biology - Abstract
Abnormal aggregation of proteins into filamentous aggregates commonly associates with many diseases, such as Alzheimer’s disease, Parkinson’s disease and type-2 diabetes. These filamentous aggregates, also known as amyloids, can propagate their abnormal structures to either the same precursor molecules (seeding) or other protein monomers (cross-seeding). Cross-seeding has been implicated in the abnormal protein aggregation and has been found to facilitate the formation of physiological amyloids. It has risen to be an exciting area of research with a high volume of published reports. In this review article, we focus on the biophysical processes underlying the cross-seeding for some of the most commonly studied amyloid proteins. Here we will discuss the relevant literature related to cross-seeded polymerization of amyloid-beta, human islet amyloid polypeptide (hIAPP, or also known as amylin) and alpha-synuclein. SEVI (semen-derived enhancer of viral infection) amyloid formation by the cross-seeding between the bacterial curli protein and PAP(248–286) is also briefly discussed.
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- 2020
31. Memory, Cognitive Impairment and Dementia
- Author
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Kaushik Mukhopadhaya and Arun Jha
- Subjects
Mechanism (biology) ,business.industry ,Memory formation ,Medicine ,Dementia ,Cognition ,Disease ,business ,Cognitive impairment ,medicine.disease ,Abnormal protein ,Neuroscience - Abstract
This chapter defines normal memory and cognitive impairment. Different types of memory are described with mechanism of memory formation and forgetfulness. It then traces how Dr Alzheimer described his first patient over 100 years ago, and the abnormal proteins in her brain (now known as plaques and tangles) the hallmarks of Alzheimer’s disease. There is a section on the classification of dementia followed by the prevalence and risk factors for developing Alzheimer’s disease in old age.
- Published
- 2020
32. Pathogenic and protective roles of extracellular vesicles in neurodegenerative diseases
- Author
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Toshihide Takeuchi
- Subjects
0303 health sciences ,Brain ,Neurodegenerative Diseases ,General Medicine ,Extracellular vesicle ,Disease ,Biology ,medicine.disease ,Biochemistry ,Extracellular vesicles ,Abnormal protein ,Neuroprotection ,Cell biology ,03 medical and health sciences ,Extracellular Vesicles ,0302 clinical medicine ,Proteostasis ,medicine ,Animals ,Humans ,In patient ,Amyotrophic lateral sclerosis ,Molecular Biology ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, amyotrophic lateral sclerosis and polyglutamine diseases are caused by aggregation and abnormal accumulation of the disease-causative proteins in brain and spinal cord. Recent studies have suggested that proteins associated with neurodegenerative diseases are secreted and transmitted intercellularly via extracellular vesicles, which may be involved in propagation of abnormal protein accumulation and progressive degeneration in patient brains. On the other hand, it has been also reported that extracellular vesicles have neuroprotective roles in these diseases, which potentially contribute to preventing aggregation formation and aberrant accumulation of the disease-associated proteins. In this review, I summarize the current understanding of the roles of extracellular vesicles in neurodegenerative diseases, especially focusing on the pathogenic and neuroprotective aspects. Elucidation of these two aspects of extracellular vesicles would provide insight into not only potential therapeutic targets for treatment of neurodegenerative diseases but also development of extracellular vesicle-based biomarkers for disease diagnostics.
- Published
- 2020
33. High Expression of Tumor Abnormal Protein Preoperatively Predicts Poor Prognosis of Patients With Esophageal Squamous Cell Carcinoma
- Author
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Guohui Zang, Jie Yao, Yuanjun Cheng, Yongbing Chen, and Qianru Fang
- Subjects
Oncology ,medicine.medical_specialty ,lcsh:Surgery ,Esophageal squamous cell carcinoma ,Abnormal protein ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Internal medicine ,medicine ,Stage (cooking) ,Lung cancer ,030304 developmental biology ,Original Research ,tumor abnormal protein ,0303 health sciences ,business.industry ,Cancer ,lcsh:RD1-811 ,medicine.disease ,poor ,digestive system diseases ,esophageal squamous cell carcinoma ,030220 oncology & carcinogenesis ,Biomarker (medicine) ,Surgery ,prognosis ,business ,TAP - Abstract
Background: Esophageal squamous cell carcinoma (ESCC) acts as a fatal malignant tumor among human beings and is marked by late-stage diagnosis, frequent recurrence, metastasis, and therapy resistance. Tumor abnormal protein (TAP) remarkably affects cancer development and progression of human cancers. TAP has been shown to be a biomarker for gastric and lung cancer progression. Nevertheless, the clinical value exhibited by TAP for ESCC has not been well-explained in the current literature.Methods: The present study included 183 ESCC cases who received surgical resection and 183 cases who had normal physical checkup from March 2013 to January 2015 at the People's Hospital of Chizhou, and used the TAP detection agent for evaluating the TAP relative level.Results: As found, ESCC patients presented an obviously higher TAP expression relative to cases who had normal physical checkup. Moreover, TAP expression was significantly downregulated after surgery. Furthermore, the TAP expression was correlated with gender, smoking, pathologic differentiation, and pN stage, but not with age, tumor location, surgical type, pT stage, and vascular invasion. High expression of TAP was significantly correlated with poorer overall survival (OS) rate in ESCC patients. TAP was an independent prognostic predictor in ESCC patients, based on the multivariate survival analysis.Conclusion: The study reveals how TAP upregulation promotes ESCC malignant progression, and concludes that TAP acts as the therapeutic target and potential biomarker specific to ESCC.
- Published
- 2020
34. Molecular landscape of long noncoding RNAs in brain disorders
- Author
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Sumin Yang, Sung Hyun Kim, Jae-Yeol Joo, and Key-Hwan Lim
- Subjects
0301 basic medicine ,RNA ,Neurodegenerative Diseases ,Disease ,Biology ,medicine.disease ,Abnormal protein ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Psychiatry and Mental health ,030104 developmental biology ,0302 clinical medicine ,Key factors ,Neurodevelopmental Disorders ,medicine ,Humans ,RNA, Long Noncoding ,Alzheimer's disease ,Molecular Biology ,Neuroscience ,Gene ,030217 neurology & neurosurgery ,Biomarkers - Abstract
According to current paradigms, various risk factors, such as genetic mutations, oxidative stress, neural network dysfunction, and abnormal protein degradation, contribute to the progression of brain disorders. Through the cooperation of gene transcripts in biological processes, the study of noncoding RNAs can lead to insights into the cause and treatment of brain disorders. Recently, long noncoding RNAs (lncRNAs) which are longer than 200 nucleotides in length have been suggested as key factors in various brain disorders. Accumulating evidence suggests the potential of lncRNAs as diagnostic or prognostic biomarkers and therapeutic targets. High-throughput screening-based sequencing has been instrumental in identification of lncRNAs that demand new approaches to understanding the progression of brain disorders. In this review, we discuss the recent progress in the study of lncRNAs, and addresses the pathogenesis of brain disorders that involve lncRNAs and describes the associations of lncRNAs with neurodegenerative disorders such as Alzheimer disease (AD), Parkinson disease (PD), and neurodevelopmental disorders. We also discuss potential targets of lncRNAs and their promise as novel therapeutics and biomarkers in brain disorders.
- Published
- 2020
35. Peer Review #2 of 'Integrated bioinformatics analysis of potential pathway biomarkers using abnormal proteins in clubfoot (v0.1)'
- Author
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X Yin
- Subjects
Clubfoot ,Bioinformatics analysis ,business.industry ,medicine ,Computational biology ,medicine.disease ,business ,Abnormal protein - Published
- 2020
36. Molecular spectroscopic markers of abnormal protein aggregation
- Author
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Kamila Sofińska, Natalia Wilkosz, Katarzyna Skirlińska-Nosek, Michał Czaja, Sara Seweryn, Ewelina Lipiec, and Marek Szymonski
- Subjects
Amyloid ,multivariate data analysis ,nanospectroscopy ,Pharmaceutical Science ,hierarchical cluster analysis (HCA) ,02 engineering and technology ,Review ,Molecular spectroscopy ,Spectrum Analysis, Raman ,Abnormal protein ,Analytical Chemistry ,lcsh:QD241-441 ,03 medical and health sciences ,symbols.namesake ,Protein Aggregates ,lcsh:Organic chemistry ,Drug Discovery ,Animals ,Humans ,abnormal protein aggregation ,neurodegenerative diseases ,principal component analysis (PCA) ,Physical and Theoretical Chemistry ,amyloids ,Protein secondary structure ,030304 developmental biology ,0303 health sciences ,Principal Component Analysis ,Chemistry ,Organic Chemistry ,secondary structure ,021001 nanoscience & nanotechnology ,multivariate data analysis, Principal Component Analysis (PCA), Hierarchical Cluster Analysis (HCA), molecular spectroscopy ,Chemistry (miscellaneous) ,molecular spectroscopy ,Multivariate Analysis ,Biophysics ,symbols ,Molecular Medicine ,0210 nano-technology ,Raman spectroscopy - Abstract
Abnormal protein aggregation has been intensively studied for over 40 years and broadly discussed in the literature due to its significant role in neurodegenerative diseases etiology. Structural reorganization and conformational changes of the secondary structure upon the aggregation determine aggregation pathways and cytotoxicity of the aggregates, and therefore, numerous analytical techniques are employed for a deep investigation into the secondary structure of abnormal protein aggregates. Molecular spectroscopies, including Raman and infrared ones, are routinely applied in such studies. Recently, the nanoscale spatial resolution of tip-enhanced Raman and infrared nanospectroscopies, as well as the high sensitivity of the surface-enhanced Raman spectroscopy, have brought new insights into our knowledge of abnormal protein aggregation. In this review, we order and summarize all nano- and micro-spectroscopic marker bands related to abnormal aggregation. Each part presents the physical principles of each particular spectroscopic technique listed above and a concise description of all spectral markers detected with these techniques in the spectra of neurodegenerative proteins and their model systems. Finally, a section concerning the application of multivariate data analysis for extraction of the spectral marker bands is included.
- Published
- 2020
37. Neuromuscular Transmission Disorders
- Author
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Mustafa A. Salih and Peter B. Kang
- Subjects
Protein glycosylation ,Congenital myasthenic syndrome ,Biology ,medicine.disease ,Abnormal protein ,Neuromuscular junction ,Basal (phylogenetics) ,medicine.anatomical_structure ,Neuromuscular Transmission Disorders ,Postsynaptic potential ,health services administration ,medicine ,Neuroscience ,health care economics and organizations ,Biochemical mechanism - Abstract
Congenital myasthenic syndrome (CMS) is a heterogenous group of inherited disorders caused by genetic defects that affect transmission of signals from nerve terminals to muscle endplates at the neuromuscular junction (NMJ) [1–4]. Based on the site and biochemical mechanism of the underlying defect, they are classified in presynaptic, synaptic (basal lamina-associated), and postsynaptic subcategories of CMS. The recent classification takes into account defects in protein glycosylation causing CMS [2]. These abnormal proteins are located at different sites of the endplate.
- Published
- 2020
38. Nanoscale analysis of protein self-assemblies
- Author
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Ewelina Lipiec
- Subjects
chemistry.chemical_classification ,Molecular level ,Chemistry ,Biophysics ,Peptide ,Protein aggregation ,Protein secondary structure ,Abnormal protein - Abstract
Neurodegenerative diseases are one of the most serious health and social problems in the world today. Abnormal protein aggregation is responsible for the etiology of these diseases, and it is of central importance to many research disciplines. A better understanding of abnormal protein aggregation mechanisms may determine strategies for the treatment. A very promising alternative for commonly used analytical techniques is an application of molecular nanospectroscopy, such as tip-enhanced Raman (TER), nano-Fourier-transform infrared, and atomic force microscopy–infrared spectroscopies in studies of abnormal aggregation of neurodegenerative peptides. These techniques may probe nanovolumes of investigated samples and therefore they allow for chemical/structural analysis of individual aggregates in very inhomogeneous samples of aggregating peptide. Prior theoretical and experimental approaches allowed modeling of hypothetic aggregation pathways. However, methodological limitations prevented direct experimental observations. Deep analysis of the secondary structure of single peptide aggregates brought new insights into our knowledge of possible aggregation schemes. Above all, an application of nanospectroscopic techniques extended existing knowledge about cytotoxic protein aggregation and understanding, at the molecular level, of the influence of intrinsic and extrinsic factors on the aggregation processes. Such knowledge is essential for developing effective therapeutic strategies, which inhibit self-assembly.
- Published
- 2020
39. Cerebrospinal fluid biomarkers of Parkinson's disease: an update
- Author
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Kanae Nagao and Peter A. LeWitt
- Subjects
Laboratory methods ,Cerebrospinal fluid ,Neurochemical ,Parkinson's disease ,business.industry ,medicine ,Disease ,medicine.disease ,business ,Neuroscience ,Abnormal protein - Abstract
Investigation of disease-specific biomarkers has the potential to advance the understanding of what causes Parkinson's disease (PD) and can lead to discovery of better treatments. Although PD's clinical features can be unmistakable, current laboratory methods have not enhanced its recognition. Over several decades, many attempts have sought out potential neurochemical indicators of PD diagnosis and progression. A logical starting point for this search has been cerebrospinal fluid (CSF), a biospecimen contiguous with the brain sites of pathology in this disorder. Guiding the search for biomarkers has been an understanding that neurons undergoing degeneration manifest distinct physiological changes such as abnormal protein aggregation, altered mitochondrial function, and a decline in neurotransmitter output. Beyond targeted searches for PD biomarkers, some studies have taken an exploratory approach by profiling large numbers of CSF constituents in the hopes of a successful discovery. This chapter will review the highlights of several decades of investigation into CSF PD biomarkers.
- Published
- 2020
40. The Prognostic Impact of Abnormal Protein Bands in Multiple Myeloma: A Systematic Review and Meta-Analysis
- Author
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Saad Jamshed, Soon Khai Low, and Matthew Ho
- Subjects
Oncology ,medicine.medical_specialty ,business.industry ,Immunology ,Cell Biology ,Hematology ,medicine.disease ,Biochemistry ,Abnormal protein ,Internal medicine ,Meta-analysis ,medicine ,business ,Multiple myeloma - Abstract
Introduction: The detection of abnormal protein bands (APB) different from the original monoclonal protein in patients with multiple myeloma (MM) who underwent stem cell transplantation and/or chemotherapy has been reported. These atypical serum immunofixation patterns may be monoclonal (also termed secondary monoclonal gammopathy of undetermined significance) or oligoclonal bands (OB). The prognostic significance of this phenomenon remains controversial. This systematic review and meta-analysis aimed to summarize and analyze the evidence for the association between APB with survival in MM patients. Methods: A systematic search of PubMed, Cochrane, Google Scholar, Medline-Ovid, CINAHL, and ERIC, was conducted using relevant search terms. All studies were screened using predefined selection criteria and critically appraised for quality assessment following the Preferred Reporting Items for Systematic Reviews and Meta-analyses (PRISMA) guideline. All studies that described the presence of APB, defined as monoclonal spike with heavy or light chain immunoglobulin distinct from the original paraprotein at initial diagnosis of MM, and its associations with survival were included. Studies that reported multivariate adjusted hazard ratios (HR) were further included for meta-analysis. Random-effects model was used to synthesize the pooled HR estimate for the association of APB with survival. Cochran's Q statistics and I2 tests were used to evaluate statistical heterogeneity. Results: A total of 24 out of 181 eligible studies were included for qualitative synthesis. Four studies (including 1115 patients) that reported HR estimates were included in the final meta-analysis. The random-effect summary HR for the progression-free survival among patients with APB was 0.44 (95% CI, 0.31-0.65) with no statistical heterogeneity (I2=0%, p=0.93). The pooled HR for the association with overall survival was 0.31 (95% CI, 0.14-0.66) with moderate statistical heterogeneity (I2=45%; p=0.16) for patients with APB. One study (Silva et al, 2017) only included patients with at least very good partial response while the other three studies reported similar findings of higher occurrence of APB with complete response (Tovar et al, 2013; Jo et al, 2014; Zou et al, 2014). These results are also consistent with the presumed association of APB with complete response as suggested in other studies included in qualitative review. Conclusions: This study indicated a potential prognostic value of APB for favorable outcomes in the context of both overall and progression-free survival in MM patients after treatment. Further research is needed to evaluate the prognostic impact of the sole emergence of APB irrespective of treatment response. Figure 1 Figure 1. Disclosures Jamshed: Takeda: Honoraria.
- Published
- 2021
41. Monoclonal gammopathy of undetermined significance as viewed by haematology healthcare professionals
- Author
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Kah Heng Lim, Charlene McShane, Blain Murphy, and Lesley A. Anderson
- Subjects
Male ,medicine.medical_specialty ,Population ageing ,Patients ,Health Personnel ,education ,Primary care ,Monoclonal Gammopathy of Undetermined Significance ,Risk Assessment ,Abnormal protein ,Terminology ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Physicians ,hemic and lymphatic diseases ,Internal medicine ,Humans ,Medicine ,Hematology ,Health professionals ,business.industry ,General Medicine ,medicine.disease ,Cross-Sectional Studies ,Health Communication ,Health Care Surveys ,030220 oncology & carcinogenesis ,Family medicine ,Immunology ,Disease Progression ,Female ,business ,Monoclonal gammopathy of undetermined significance ,030215 immunology - Abstract
Objectives To investigate the words and descriptions used by haematology healthcare professionals (HCPs) to describe monoclonal gammopathy of undetermined significance (MGUS) to their patients. Methods A cross-sectional survey of haematology HCPs attending an annual haematology conference was undertaken. Content analysis was applied to the returned qualitative responses. Results In total, 55 people, many of whom were doctors (n=32; 58.2%) responded. The majority of respondents reported using simple terminology such as ‘abnormal protein’ to describe MGUS to their patients. Some reported using analogies that the patient was more likely to be familiar with, such as comparing a paraprotein to the finding of a mole or lump. Education level, age and cognitive ability were cited as important factors in deciding how and if information was relayed to patients. Many respondents supported frequent follow-up and the transfer of low risk MGUS patients to primary care. However, several highlighted a lack of awareness and understanding of MGUS outside of haematology, particularly within primary care. Only 41.8% of respondents reported providing all of their patients with an information leaflet. Conclusions With an ageing population, it is important to consider management strategies for MGUS patients. Our findings will assist those in making these arrangements. This article is protected by copyright. All rights reserved.
- Published
- 2017
42. The First Argentinian Family with Familial Amyloidosis of the Finnish Type
- Author
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Francisco Lucero Saá, Federico Andrés Cremona, Pablo Chiaradia, María Laura Igarzabal, and Natalia Ximena Minguez
- Subjects
Familial amyloidosis ,Pathology ,medicine.medical_specialty ,Case Report ,Disease ,Meretoja syndrome ,Abnormal protein ,03 medical and health sciences ,0302 clinical medicine ,lcsh:Ophthalmology ,Medicine ,Gelsolin ,business.industry ,Genetic molecular ,Lattice corneal dystrophy ,medicine.disease ,Ophthalmology ,Corneal pathology ,lcsh:RE1-994 ,030221 ophthalmology & optometry ,Familial amyloidosis, Finnish type ,business ,Single mutation ,030217 neurology & neurosurgery - Abstract
Familial amyloidosis of the Finnish type or Meretoja syndrome is a rare autosomic dominant inherited systemic condition. It was first described by Meretoja in Finland in 1969. It is a disease produced by a single mutation in the gene coding for gelsolin, which generates an abnormal protein that cumulates in tissues and leads to various signs. Obtaining an early diagnosis can be challenging, as the first manifestations of the disease are ophthalmological and may only be seen with slit-lamp biomicroscopy. We present the first 3 cases diagnosed in Argentina, confirmed by genetic molecular testing.
- Published
- 2017
43. Asymmetric Conformational Transitions in AAA+ Biological Nanomachines Modulate Direction-Dependent Substrate Protein Unfolding Mechanisms
- Author
-
Abdolreza Javidialesaadi and George Stan
- Subjects
0301 basic medicine ,Protein Folding ,biology ,In vivo degradation ,Chemistry ,Molecular Conformation ,Force spectroscopy ,Abnormal protein ,Nanostructures ,Substrate Specificity ,Surfaces, Coatings and Films ,03 medical and health sciences ,Crystallography ,030104 developmental biology ,Materials Chemistry ,biology.protein ,Unfolded protein response ,Biophysics ,Nanoparticles ,Connectin ,Titin ,Physical and Theoretical Chemistry ,Threading (protein sequence) ,Langevin dynamics - Abstract
Powerful AAA+ biological nanomachines, such as ClpY, form hexameric ring structures, which selectively process abnormal proteins targeted for degradation by unfolding and threading them through a narrow central channel. The molecular details of this process are not yet fully understood. We perform Langevin dynamics simulations using a coarse-grained model of substrate proteins (SPs), Titin I27 and its V13P variant, threading through the ClpY pore. We probe the effect of ClpY surface heterogeneity and changes in pore width on SP orientation and the direction of applied force during SP unfolding. We contrast mechanisms of SP unfolding in a restrained geometry, as in single-molecule force spectroscopy experiments, and in an unrestrained geometry, as in the in vivo degradation process. In open pore configurations, unfolding of unrestrained SPs occurs via an unzipping mechanism, which involves force application along a weak mechanical direction. In the partially closed pore, unfolding occurs via a shearing mechanism, with force application along a strong mechanical direction. By contrast, unfolding of the restrained I27 is limited to a shearing mechanism due to application of force along the strong mechanical direction. We propose that Clp nanomachine plasticity underlies direction-dependent pulling mechanisms that enable versatile SP remodeling actions.
- Published
- 2017
44. Pathophysiology of Keratoconus: What Do We Know Today
- Author
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James W Foster, Albert S. Jun, Uri Soiberman, and Shukti Chakravarti
- Subjects
0301 basic medicine ,Morphology ,Proteomics ,TGF-β ,medicine.medical_specialty ,Keratoconus ,genetic structures ,Corneal epithelium ,Disease ,Pathogenesis ,Abnormal protein ,Article ,03 medical and health sciences ,Corneal ectasia ,0302 clinical medicine ,Ophthalmology ,Cornea ,Medicine ,Cytokine ,business.industry ,medicine.disease ,Pathophysiology ,eye diseases ,030104 developmental biology ,medicine.anatomical_structure ,Oxidative stress ,030221 ophthalmology & optometry ,Progressive visual impairment ,sense organs ,Keratocytes ,business - Abstract
Keratoconus is a common corneal ectasia that leads to progressive visual impairment. Numerous studies have shown abnormal protein expression patterns in keratoconic corneas. However, the specific mechanisms causing this disease remain ambiguous. This review aims to provide an update on morphological studies of the keratoconic cornea, relate these early studies with current findings from proteomic, biochemical and cell culture studies and to postulate possible pathogenic pathways.
- Published
- 2017
45. Disturbed Matrix Metalloproteinase Pathway in Both Age-Related Macular Degeneration and Alzheimer’s Disease
- Author
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Yunhee Lee, Jin-Jun Zhang, Ali A. Hussain, Paul T. Francis, and John Marshall
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Article Subject ,Chemistry ,Brain tissue ,Disease ,Matrix metalloproteinase ,Macular degeneration ,medicine.disease ,Abnormal protein ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Endocrinology ,Neurology ,Ageing ,Age related ,Internal medicine ,030221 ophthalmology & optometry ,medicine ,Neurology (clinical) ,Research Article ,Biomedical engineering - Abstract
Purpose.Abnormal protein deposits includingβ-amyloid, found in ageing Bruch’s membrane and brain, are susceptible to degradation by matrix metalloproteinases (MMPs). In ageing Bruch’s membrane, these MMPs become less effective due to polymerisation and aggregation reactions (constituting the MMP Pathway), a situation much advanced in age-related macular degeneration (AMD). The likely presence of this MMP Pathway in brain with the potential to compromise the degradation ofβ-amyloid associated with Alzheimer’s disease (AD) has been investigated.Methods.Presence of high molecular weight MMP species (HMW1 and HMW2) together with the much larger aggregate termed LMMC was determined by standard zymographic techniques. Centrigugation and gel filtration techniques were used to separate and quantify the distribution between bound and free MMP species.Results.The MMP Pathway, initially identified in Bruch’s membrane, was also present in brain tissue. The various MMP species displayed bound-free equilibrium and in AD samples, the amount of bound HMW1 and pro-MMP9 species was significantly reduced (p<0.05). The abnormal operation of the MMP Pathway in AD served to reduce the degradation potential of the MMP system.Conclusion.The presence and abnormalities of the MMP Pathway in both brain and ocular tissues may therefore contribute to the anomalous deposits associated with AD and AMD.
- Published
- 2017
46. New Medications in the Treatment of Hereditary Transthyretin Amyloidosis
- Author
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Scot Walker
- Subjects
Pathology ,medicine.medical_specialty ,Amyloid ,medicine.medical_treatment ,macromolecular substances ,Pharmacy ,Disease ,030204 cardiovascular system & hematology ,Liver transplantation ,Abnormal protein ,03 medical and health sciences ,0302 clinical medicine ,New medications ,Slow progression ,medicine ,Pharmacology (medical) ,Pharmacology ,Pharmaceutical Pipeline Update ,biology ,business.industry ,Amyloidosis ,nutritional and metabolic diseases ,medicine.disease ,nervous system diseases ,Transthyretin ,biology.protein ,business ,030217 neurology & neurosurgery - Abstract
Hereditary transthyretin amyloidosis is an inherited disorder that results in the gradual progressive deposit of abnormal protein called amyloid in the body’s organs and tissues. There are currently no approved drugs to treat transthyretin amyloidosis, and patients may require liver transplantation for survival. There are a few drugs in development to treat hereditary transthyretin amyloidosis either by stabilizing the abnormal protein or by decreasing production of transthyretin. Both methods are being developed to slow progression of the disease.
- Published
- 2018
47. Abnormal Proteins May Contribute to Some Schizophrenia Cases
- Author
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Nick Zagorski
- Subjects
business.industry ,Schizophrenia (object-oriented programming) ,Medicine ,General Medicine ,Bioinformatics ,business ,Abnormal protein - Published
- 2019
48. Clinical value of prostate-specific antigen combined with tumor abnormal protein (TAP) in the diagnosis of prostate puncture
- Author
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Yu Guan, Chaozhao Liang, and Shuiping Yin
- Subjects
Cancer Research ,medicine.medical_specialty ,business.industry ,Urology ,tumor abnormal glycoprotein ,medicine.disease ,urologic and male genital diseases ,prostate cancer ,Abnormal protein ,Agglutination (biology) ,Prostate-specific antigen ,Prostate cancer ,medicine.anatomical_structure ,Oncology ,Antigen ,Prostate ,medicine ,Clinical value ,Radiology, Nuclear Medicine and imaging ,Clinical significance ,Original Article ,diagnostic value ,business ,Prostate-specific antigen (PSA) - Abstract
Background In this study, we aimed to test the clinical value of total prostate-specific antigen (T-PSA), free prostate-specific antigen (F-PSA), and T-PSA combined with tumor abnormal glycoprotein (TAP) for early diagnosis of prostate cancer. Methods The levels of serum T-PSA and F-PSA were measured in 105 malignant prostate tumors and 97 benign prostate tissues using chemiluminescence immunoassay. The concentration of TAP in the serum of patients was tested by the agglutination method. Differences in PSA levels and F-PSA/T-PSA ratio in two patient groups were analyzed by t-test. TAP concentrations were compared using Chi-square test. The sensitivity, specificity, and accuracy of PSA combined with TAP for the diagnosis of prostate cancer were analyzed. Results The serum PSA level in patients with malignant tumors were higher than that in patients with benign tumors (P
- Published
- 2019
49. New insights of poly(ADP-ribosylation) in neurodegenerative diseases: A focus on protein phase separation and pathologic aggregation
- Author
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Cong Liu and Yanshan Fang
- Subjects
0301 basic medicine ,Amyloid ,Poly ADP ribose polymerase ,Poly-ADP-Ribosylation ,Disease ,Poly(ADP-ribose) Polymerase Inhibitors ,Biochemistry ,Abnormal protein ,Protein Aggregation, Pathological ,03 medical and health sciences ,Poly ADP Ribosylation ,0302 clinical medicine ,medicine ,Animals ,Humans ,Amyotrophic lateral sclerosis ,Polymerase ,Pharmacology ,biology ,business.industry ,Neurodegeneration ,Neurodegenerative Diseases ,medicine.disease ,030104 developmental biology ,030220 oncology & carcinogenesis ,biology.protein ,business ,Neuroscience ,DNA Damage - Abstract
Abnormal protein aggregation is a common pathological feature of neurodegenerative diseases such as Alzheimer's disease (AD), Parkinson's disease (PD), Huntington's disease (HD) and amyotrophic lateral sclerosis (ALS). Protein posttranslational modifications (PTMs) play a crucial regulatory role in the formation of pathologic aggregation. Among the known PTMs involved in neurodegeneration, poly(ADP-ribosylation) (PARylation) has emerged with promising therapeutic potentials of the use of poly(ADP-ribose) (PAR) polymerase (PARP) inhibitors. In this review, we describe the mounting evidence that abnormal PARP activation is involved in various neurodegenerative diseases, and discuss the underpinning mechanisms with a focus on the recent findings that PARylation affects liquid-liquid phase separation and aggregation of amyloid proteins. We hope this review will stimulate further investigation of the unknown functions of PARylation and promote the development of more effective therapeutic agents in treating neurodegeneration.
- Published
- 2019
50. Prion-like propagation of α-synuclein in neurodegenerative diseases
- Author
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Masato Hasegawa and Airi Tarutani
- Subjects
0301 basic medicine ,Mechanism (biology) ,Dementia with Lewy bodies ,Disease ,Biology ,medicine.disease ,Abnormal protein ,Therapeutic modalities ,nervous system diseases ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine ,Effective treatment ,α synuclein ,Prion protein ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Prions are defined as proteinaceous infectious particles that do not contain nucleic acids. Neuropathological investigations of post-mortem brains and recent studies of experimental transmission have suggested that amyloid-like abnormal protein aggregates, which are the defining feature of many neurodegenerative diseases, behave like prions and propagate throughout the brain. This prion-like propagation may be the underlying mechanism of onset and progression of neurodegenerative diseases, although the precise molecular mechanisms involved remain unclear. However, in vitro and in vivo experimental models of prion-like propagation using pathogenic protein seeds are well established and are extremely valuable for the exploration and evaluation of novel drugs and therapies for neurodegenerative diseases for which there is no effective treatment. In this chapter, we introduce the experimental models of prion-like propagation of α-synuclein, which is accumulated in Parkinson's disease, dementia with Lewy bodies, and multiple system atrophy, and we describe their applications for the development of new diagnostic and therapeutic modalities. We also introduce the concept of "α-syn strains," which may underlie the pathological and clinical diversity of α-synucleinopathies.
- Published
- 2019
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