49 results on '"Abdon Pena-Francesch"'
Search Results
2. Contextualizing technology in the classroom via remote access: Using space exploration themes and scanning electron microscopy as tools to promote engagement in multidisciplinary geology/chemistry experiments
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Brandon Rodriguez, Veronica Jaramillo, Vanessa Wolf, Esteban Bautista, Jennifer Portillo, Alexandra Brouke, Ashley Min, Andrea Melendez, Joseph Amann, Abdon Pena-Francesch, and Jared Ashcroft
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Remote access, technology, engagement, geology, chemistry ,Education ,Special aspects of education ,LC8-6691 ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
A multidisciplinary science experiment was performed in K-12 classrooms focusing on the interconnection of technology with geology and chemistry. The engagement and passion for science of over eight hundred students across twenty-one classrooms, utilizing a combination of hands-on activities to study the relationships between Earth and space rock studies, followed by a remote access session wherein students remotely employed the use of a scanning electron microscope (SEM) and energy-dispersive spectroscopy (EDS) to validate their findings was investigated. Participants were from predominantly low-income minority communities, with little exposure to the themes and equipment used, despite being freely available resources. Students indicated greatly increased interest in scientific practices and careers, as well as a better grasp of the content as a result of the lab and remote access coupling format.
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- 2018
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3. Squid-Inspired Tandem Repeat Proteins: Functional Fibers and Films
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Abdon Pena-Francesch and Melik C. Demirel
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tandem repeat ,protein ,sustainability ,fibers ,thin films ,self-healing ,Chemistry ,QD1-999 - Abstract
Production of repetitive polypeptides that comprise one or more tandem copies of a single unit with distinct amorphous and ordered regions have been an interest for the last couple of decades. Their molecular structure provides a rich architecture that can micro-phase-separate to form periodic nanostructures (e.g., lamellar and cylindrical repeating phases) with enhanced physicochemical properties via directed or natural evolution that often exceed those of conventional synthetic polymers. Here, we review programmable design, structure, and properties of functional fibers and films from squid-inspired tandem repeat proteins, with applications in soft photonics and advanced textiles among others.
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- 2019
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4. Squid Ring Teeth–coated Mesh Improves Abdominal Wall Repair
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Ashley N. Leberfinger, MD, Monika Hospodiuk, MS, Abdon Pena-Francesch, PhD, Bugra Ayan, MS, Veli Ozbolat, PhD, Srinivas V. Koduru, PhD, Ibrahim T. Ozbolat, PhD, Melik C. Demirel, PhD, and Dino J. Ravnic, DO, MPH
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Surgery ,RD1-811 - Abstract
Background:. Hernia repair is a common surgical procedure with polypropylene (PP) mesh being the standard material for correction because of its durability. However, complications such as seroma and pain are common, and repair failures still approach 15% secondary to poor tissue integration. In an effort to enhance mesh integration, we evaluated the applicability of a squid ring teeth (SRT) protein coating for soft-tissue repair in an abdominal wall defect model. SRT is a biologically derived high-strength protein with strong mechanical properties. We assessed tissue integration, strength, and biocompatibility of a SRT-coated PP mesh in a first-time pilot animal study. Methods:. PP mesh was coated with SRT (SRT-PP) and tested for mechanical strength against uncoated PP mesh. Cell proliferation and adhesion studies were performed in vitro using a 3T3 cell line. Rats underwent either PP (n = 3) or SRT-PP (n = 6) bridge mesh implantation in an anterior abdominal wall defect model. Repair was assessed clinically and radiographically, with integration evaluated by histology and mechanical testing at 60 days. Results:. Cell proliferation was enhanced on SRT-PP mesh. This was corroborated in vivo by abdominal wall histology, dramatically diminished craniocaudal mesh contraction, improved strength testing, and higher tissue failure strain. There was no increase in seroma or visceral adhesion formation. No foreign body reactions were noted on liver histology. Conclusions:. SRT applied as a coating appears to augment mesh–tissue integration and improve abdominal wall stability following bridged repair. Further studies in larger animals will determine its applicability for hernia repair in patients.
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- 2018
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5. Research Update: Programmable tandem repeat proteins inspired by squid ring teeth
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Abdon Pena-Francesch, Natalia E. Domeradzka, Huihun Jung, Benjamin Barbu, Mert Vural, Yusuke Kikuchi, Benjamin D. Allen, and Melik C. Demirel
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Biotechnology ,TP248.13-248.65 ,Physics ,QC1-999 - Abstract
Cephalopods have evolved many interesting features that can serve as inspiration. Repetitive squid ring teeth (SRT) proteins from cephalopods exhibit properties such as strength, self-healing, and biocompatibility. These proteins have been engineered to design novel adhesives, self-healing textiles, and the assembly of 2d-layered materials. Compared to conventional polymers, repetitive proteins are easy to modify and can assemble in various morphologies and molecular architectures. This research update discusses the molecular biology and materials science of polypeptides inspired by SRT proteins, their properties, and perspectives for future applications.
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- 2018
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6. Task space adaptation via the learning of gait controllers of magnetic soft millirobots.
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Sinan özgün Demir, Utku Culha, Alp Can Karacakol, Abdon Pena-Francesch, Sebastian Trimpe, and Metin Sitti
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- 2021
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7. Fiber density and matrix stiffness modulate distinct cell migration modes in a 3D stroma mimetic composite hydrogel
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Harrison L. Hiraki, Daniel L. Matera, William Y. Wang, Eashan S. Prabhu, Zane Zhang, Firaol Midekssa, Anna E. Argento, Johanna M. Buschhaus, Brock A. Humphries, Gary D. Luker, Abdon Pena-Francesch, and Brendon M. Baker
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Biomaterials ,Biomedical Engineering ,General Medicine ,Molecular Biology ,Biochemistry ,Article ,Biotechnology - Abstract
The peritumoral stroma is a complex 3D tissue that provides cells with myriad biophysical and biochemical cues. Histologic observations suggest that during metastatic spread of carcinomas, these cues influence transformed epithelial cells, prompting a diversity of migration modes spanning single cell and multicellular phenotypes. Purported consequences of these variations in tumor escape strategies include differential metastatic capability and therapy resistance. Therefore, understanding how cues from the peritumoral stromal microenvironment regulate migration mode has both prognostic and therapeutic value. Here, we utilize a synthetic stromal mimetic in which matrix fiber density and bulk hydrogel mechanics can be orthogonally tuned to investigate the contribution of these two key matrix attributes on MCF10A migration mode phenotypes, epithelial-mesenchymal transition (EMT), and invasive potential. We develop an automated computational image analysis framework to extract migratory phenotypes from fluorescent images and determine 3D migration metrics relevant to metastatic spread. Using this analysis, we find that matrix fiber density and bulk hydrogel mechanics distinctly contribute to a variety of MCF10A migration modes including amoeboid, single mesenchymal, clusters, and strands. We identify combinations of physical and soluble cues that induce a variety of migration modes originating from the same MCF10A spheroid and use these settings to examine a functional consequence of migration mode -resistance to apoptosis. We find that cells migrating as strands are more resistant to staurosporine-induced apoptosis than either disconnected clusters or individual invading cells. Improved models of the peritumoral stromal microenvironment and understanding of the relationships between matrix attributes and cell migration mode can aid ongoing efforts to identify effective cancer therapeutics that address cell plasticity-based therapy resistances. STATEMENT OF SIGNIFICANCE: Stromal extracellular matrix structure dictates both cell homeostasis and activation towards migratory phenotypes. However decoupling the effects of myriad biophysical cues has been difficult to achieve. Here, we encapsulate electrospun fiber segments within an amorphous hydrogel to create a fiber-reinforced hydrogel composite in which fiber density and hydrogel stiffness can be orthogonally tuned. Quantification of 3D cell migration reveal these two parameters uniquely contribute to a diversity of migration phenotypes spanning amoeboid, single mesenchymal, multicellular cluster, and collective strand. By tuning biophysical and biochemical cues to elicit heterogeneous migration phenotypes, we find that collective strands best resist apoptosis. This work establishes a composite approach to modulate fibrous topography and bulk hydrogel mechanics and identified biomaterial parameters to direct distinct 3D cell migration phenotypes.
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- 2023
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8. Biomimicry of the Manduca Sexta Forewing Using SRT Protein Complex for FWMAV Development.
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Simone C. Michaels, Kenneth C. Moses, Richard J. Bachmann, Reginald Hamilton, Abdon Pena-Francesch, Asheesh Lanba, Melik C. Demirel, and Roger D. Quinn
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- 2015
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9. Programmable Tissue Folding Patterns in Structured Hydrogels
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Avinava Roy, Zenghao Zhang, Madeline K. Eiken, Alan Shi, Abdon Pena‐Francesch, and Claudia Loebel
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Mechanics of Materials ,Mechanical Engineering ,General Materials Science - Published
- 2023
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10. Self‐Healing Photochromic Elastomer Composites for Wearable UV‐Sensors (Adv. Funct. Mater. 20/2023)
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Tiwa Yimyai, Daniel Crespy, and Abdon Pena‐Francesch
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Biomaterials ,Electrochemistry ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials - Published
- 2023
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11. Diffusive Dynamic Modes of Recombinant Squid Ring Teeth Proteins by Neutron Spectroscopy
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Abdon Pena-Francesch, Huihun Jung, Madhusudan Tyagi, and Melik C. Demirel
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Diffusion ,Neutrons ,Biomaterials ,Neutron Diffraction ,Polymers and Plastics ,Spectrum Analysis ,Decapodiformes ,Materials Chemistry ,Animals ,Proteins ,Water ,Bioengineering - Abstract
Stimuli-responsive structural proteins are emerging as promising biocompatible materials for a wide range of biological and nonbiological applications. To understand the physical properties of structural proteins and to replicate their performance in biosynthetic systems, there is a need to understand the molecular mechanisms and relationships that regulate their structure, dynamics, and properties. Here, we study the dynamics of a recombinant squid-inspired protein from
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- 2022
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12. Plasticized liquid crystal networks and chemical motors for the active control of power transmission in mechanical devices
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Natalie P. Pinchin, Chia-Heng Lin, Cecelia A. Kinane, Naoki Yamada, Abdon Pena-Francesch, and Hamed Shahsavan
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General Chemistry ,Condensed Matter Physics - Abstract
The miniaturization of mechanical devices poses new challenges in powering, actuation, and control since traditional approaches cannot be used due to inherent size limitations. This is particularly challenging in untethered small-scale machines where independent actuation of multicomponent and multifunctional complex systems is required. This work showcases the integration of self-powered chemical motors and liquid crystal networks into a powertrain transmission device to achieve orthogonal untethered actuation for power and control. Driving gears with a protein-based chemical motor were used to power the transmission system with Marangoni propulsive forces, while photothermal liquid crystal networks were used as a photoresponsive clutch to engage/disengage the gear system. Liquid crystal networks were plasticized for optimized photothermal bending actuation to break the surface tension of water and achieve reversible immersion/resurfacing at the air-water interface. This concept is demonstrated in a milliscale transmission gear system and offers potential solutions for aquatic soft robots whose powering and control mechanisms must be necessarily decoupled.
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- 2022
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13. Adaptive Magnetoactive Soft Composites for Modular and Reconfigurable Actuators
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Zenghao Zhang, John T. Heron, and Abdon Pena‐Francesch
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Biomaterials ,Electrochemistry ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials - Published
- 2023
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14. Functional Chemical Motor Coatings for Modular Powering of Self-Propelled Particles
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Chia-Heng Lin, Cecelia Kinane, Zenghao Zhang, and Abdon Pena-Francesch
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Chemistry, Physical ,Surface Tension ,General Materials Science ,Nanostructures - Abstract
Inspired by the locomotion of semiaquatic insects, a variety of surface swimming microrobots propelled by surface tension Marangoni forces have been developed over the years. However, most Marangoni micromotor systems present limitations in their applications due to poor performance, short lifetime, low efficiency, and toxicity. We have developed a functional chemical motor coating consisting of protein microfilms with entrapped fuel to functionalize inactive substrates or particles. This motor material system generates large Marangoni propulsive forces with extremely small amounts of fuel due to a self-regulated fuel release mechanism based on dynamic nanostructural changes in the protein matrix, enhancing the lifetime and efficiency performance over other material systems and motors. These motor functional coatings offer great versatility as they can be coated on a wide array of substrates and materials across length scales, with opportunities as modular power sources for microrobots and small-scale devices. The synergy between the protein motor matrix and the chemical fuel enables the wider design of self-powered surface microrobots without previous limitations in their fabrication and performance, including the new design of hybrid microrobots with protein functional coatings as a modular power source.
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- 2022
15. Task space adaptation via the learning of gait controllers of magnetic soft millirobots
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Sinan Ozgun Demir, Utku Culha, Metin Sitti, Alp Can Karacakol, Abdon Pena-Francesch, and Sebastian Trimpe
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0209 industrial biotechnology ,Computer science ,Applied Mathematics ,Mechanical Engineering ,Bayesian optimization ,Soft robotics ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Article ,Task (project management) ,Computer Science::Robotics ,020901 industrial engineering & automation ,Gait (human) ,Targeted drug delivery ,Artificial Intelligence ,Human–computer interaction ,Modeling and Simulation ,Robot ,ddc:620 ,Electrical and Electronic Engineering ,0210 nano-technology ,Adaptation (computer science) ,Transfer of learning ,Software - Abstract
International journal of robotics research (2021). doi:10.1177/02783649211021869 special issue: "Special Issue: RSS2020", Published by Sage Science Press, Thousand Oaks, Calif.
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- 2022
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16. Self-Assembly of Topologically Networked Protein–Ti3C2Tx MXene Composites
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Melik C. Demirel, Benjamin D. Allen, Huihun Jung, Mert Vural, Abdon Pena-Francesch, and Haoyue Zhu
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chemistry.chemical_classification ,Materials science ,Titanium carbide ,Composite number ,General Engineering ,General Physics and Astronomy ,02 engineering and technology ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Template ,Percolation theory ,chemistry ,Tandem repeat ,Phase (matter) ,General Materials Science ,Self-assembly ,Composite material ,0210 nano-technology - Abstract
Hierarchical organization plays an important role in the stunning physical properties of natural and synthetic composites. Limits on the physical properties of such composites are generally defined by percolation theory and can be systematically altered using the volumetric filler fraction of the inorganic/organic phase. In natural composites, organic materials such as proteins that interact with inorganic filler materials can further alter the hierarchical order and organization of the composite via topological interactions, expanding the limits of the physical properties defined by percolation theory. However, existing polymer systems do not offer a topological parameter that can systematically modulate the assembly characteristics of composites. Here, we present a composite based on proteins and titanium carbide (Ti3C2Tx) MXene that manifests a topological network that regulates the organization, and hence physical properties, of these biomimetic composites. We designed, recombinantly expressed, and purified synthetic proteins consisting of polypeptides with repeating amino acid sequences (tandem repeats) that have the ability to self-assemble into topologically networked biomaterials. We demonstrated that the interlayer distance between MXene sheets can be controlled systematically by the number of tandem repeat units. We varied the filler fraction and number of tandem repeat units to regulate the in-plane and out-of-plane electrical conductivities of these composites. Once Ti3C2Tx MXene sheets are separated enough to facilitate formation of cross-links in our proteins with the number of tandem repeat units reaching 11, the linear I-V characteristics of the composites switched into nonlinear I-V curves with a distinct hysteresis for out-of-plane electron transport, while the in-plane I-V characteristics remained linear. This highlights the impact of synthetic protein templates, which can be designed to modulate electronic transport in composites both isotropically and anisotropically.
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- 2020
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17. Highly Conductive Self-Healing Biocomposites Based on Protein Mediated Self-Assembly of PEDOT:PSS Films
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Yusuke Kikuchi, Melik C. Demirel, Mert Vural, and Abdon Pena-Francesch
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Conductive polymer ,Materials science ,Biochemistry (medical) ,Biomedical Engineering ,Nanotechnology ,General Chemistry ,Flexible electronics ,Biomaterials ,PEDOT:PSS ,Interfacing ,Self-healing ,Electronics ,Self-assembly ,Electrical conductor - Abstract
Composites of conducting polymers offer a broad spectrum of materials for interfacing electronic devices with biological systems. Particularly, material systems based on poly(styrenesulfonate) doped poly(3,4-ethylenedioxythiophene) (PEDOT:PSS) have found applications in many bioelectronic devices as biosensitive transistors, controlled drug delivery media, and strain, temperature, and humidity sensors. The biocompatibility, intercoupled electronic and ionic conductivity, and air stable electrical properties render PEDOT:PSS based material systems indispensable for bioelectronics. However, these materials are commonly used in thin film form since freestanding films of pristine PEDOT:PSS are considered mechanically brittle compared to biological tissues, and unlike biological systems these conductive films cannot restore/heal their physical properties after excessive mechanical deformation. Here we report conductive biocomposites of PEDOT:PSS and tandem repeat proteins with the ability to self-heal once plasticized via water. The tandem repeat proteins acquired from squid ring teeth (SRT) induce structural effects on PEDOT:PSS including improved crystallinity and formation of fibrous network structures. These structural effects lead to electrical conductivity values reaching 120 S/cm for biocomposites with SRT protein concentrations below 20 wt %, which exceeds the conductivity of pristine PEDOT:PSS (∼100 S/cm). More importantly, tandem proteins facilitate consistent self-healing of freestanding biocomposites with SRT protein concentrations beyond 40 wt %. These robust biocomposites with high electrical conductivity and the ability to self-heal can find applications in numerous soft electronic systems spanning from implantable, transient, and epidermal electronics to electronic textiles.
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- 2020
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18. High shear rate propulsion of acoustic microrobots in complex biological fluids
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Abdon Pena-Francesch, Metin Sitti, Hakan Cetin, Paul Wrede, Ugur Bozuyuk, Amirreza Aghakhani, Sitti, Metin (ORCID 0000-0001-8249-3854 & YÖK ID 297104), Aghakhani, Amirreza, Pena-Francesch, Abdon, Bozuyuk, Uğur, Çetin, Hakan, Wrede, Paul, School of Medicine, College of Engineering, and Department of Mechanical Engineering
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Multidisciplinary ,Driven ,Soft ,Dynamics ,Forces ,Mucus ,Science and technology - Abstract
Untethered microrobots offer a great promise for localized targeted therapy in hard-to-access spaces in our body. Despite recent advancements, most microrobot propulsion capabilities have been limited to homogenous Newtonian fluids. However, the biological fluids present in our body are heterogeneous and have shear rate-dependent rheological properties, which limit the propulsion of microrobots using conventional designs and actuation methods. We propose an acoustically powered microrobotic system, consisting of a three-dimensionally printed 30-micrometer-diameter hollow body with an oscillatory microbubble, to generate high shear rate fluidic flow for propulsion in complex biofluids. The acoustically induced microstreaming flow leads to distinct surface-slipping and puller-type propulsion modes in Newtonian and non-Newtonian fluids, respectively. We demonstrate efficient propulsion of the microrobots in diverse biological fluids, including in vitro navigation through mucus layers on biologically relevant three-dimensional surfaces. The microrobot design and high shear rate propulsion mechanism discussed herein could open new possibilities to deploy microrobots in complex biofluids toward minimally invasive targeted therapy., Science Advances, 8 (10), ISSN:2375-2548
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- 2022
19. Bacteriophobic Zwitterionic/Dopamine Coatings for Medical Elastomers (Adv. Mater. Interfaces 30/2022)
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Robert Texidó, Pol Cabanach, Richard Kaplan, Cristina García‐Bonillo, Darío Pérez, Shuo Zhang, Salvador Borrós, and Abdon Pena‐Francesch
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Mechanics of Materials ,Mechanical Engineering - Published
- 2022
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20. Transparent and Self‐Healing Elastomers for Reconfigurable 3D Materials
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Tiwa Yimyai, Abdon Pena‐Francesch, and Daniel Crespy
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Wearable Electronic Devices ,Elastomers ,Polymers and Plastics ,Polymers ,Organic Chemistry ,Materials Chemistry - Abstract
Transparent soft materials are widely used in applications ranging from packaging to flexible displays, wearable devices, and optical lenses. Nevertheless, soft materials are susceptible to mechanical damage, leading to functional failure and premature disposal. Herein, a transparent self-healing elastomer that is able to repair the polymer network via exchange reactions of dynamic disulfide bonds is introduced. Due to its self-healing ability, the mechanical properties of the elastomer can be recovered as well as its transparency after multiple cycles of abrasion and healing. The self-healing polymer is fabricated into 3D structures by folding or modular origami assembly of planar self-healing polymer sheets. The 3D polymer objects are employed as storage containers of solid and liquid substances, reactors for photopolymerization, and cuvettes for optical measurements (exhibiting superior properties to those of commercial cuvettes). These dynamic polymers show outstanding mechanical, optical, and recycling properties that could potentially be further adapted in adaptive smart packaging, reconfigurable materials, optical devices, and recycling of elastomers.
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- 2022
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21. Liquid-Crystal-Elastomer-Actuated Reconfigurable Microscale Kirigami Metastructures
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Yubing Guo, Hamed Shahsavan, Abdon Pena-Francesch, Metin Sitti, Yingying Zhang, Mingchao Zhang, Sitti, Metin (ORCID 0000-0001-8249-3854 & YÖK ID 297104), Zhang, Mingchao, Shahsavan, Hamed, Guo, Yubing, Pena-Francesch, Abdon, Zhang, Yingying, College of Engineering, School of Medicine, and Department of Mechanical Engineering
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Kirigami ,Liquid crystal elastomers ,Reconfigurable metastructures ,Two photon polymerization ,Wireless microscale devices ,Materials science ,Fabrication ,wireless microscale devices ,Soft robotics ,Wearable computer ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,General Materials Science ,Wearable technology ,Microscale chemistry ,Chemistry ,Nanoscience and nanotechnology ,Physics ,Condensed matter ,kirigami ,liquid crystal elastomers ,reconfigurable metastructures ,two-photon polymerization ,business.industry ,Mechanical Engineering ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Mechanics of Materials ,Proof of concept ,Robot ,Artificial muscle ,0210 nano-technology ,business - Abstract
Programmable actuation of metastructures with predesigned geometrical configurations has recently drawn significant attention in many applications, such as smart structures, medical devices, soft robotics, prosthetics, and wearable devices. Despite remarkable progress in this field, achieving wireless miniaturized reconfigurable metastructures remains a challenge due to the difficult nature of the fabrication and actuation processes at the micrometer scale. Herein, microscale thermo-responsive reconfigurable metasurfaces using stimuli-responsive liquid crystal elastomers (LCEs) is fabricated as an artificial muscle for reconfiguring the 2D microscale kirigami structures. Such structures are fabricated via two-photon polymerization with sub-micrometer precision. Through rationally designed experiments guided by simulations, the optimal formulation of the LCE artificial muscle is explored and the relationship between shape transformation behaviors and geometrical parameters of the kirigami structures is build. As a proof of concept demonstration, the constructs for temperature-dependent switching and information encryption is applied. Such reconfigurable kirigami metastructures have significant potential for boosting the fundamental small-scale metastructure research and the design and fabrication of wireless functional devices, wearables, and soft robots at the microscale as well., Advanced Materials, 33 (25), ISSN:0935-9648, ISSN:1521-4095
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- 2021
22. Biosynthetic self-healing materials for soft machines
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Metin Sitti, Abdon Pena-Francesch, Huihun Jung, and Melik C. Demirel
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Computer science ,Soft robotics ,Mechanical engineering ,Biocompatible Materials ,02 engineering and technology ,Materials design ,010402 general chemistry ,01 natural sciences ,Article ,General Materials Science ,Self-healing material ,Mechanical Phenomena ,Mechanical Engineering ,Temperature ,General Chemistry ,Equipment Design ,Robotics ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Soft materials ,0104 chemical sciences ,Kinetics ,Mechanics of Materials ,Robot ,0210 nano-technology ,Actuator - Abstract
Self-healing materials are indispensable for soft actuators and robots that operate in dynamic and real-world environments, as these machines are vulnerable to mechanical damage. However, current self-healing materials have shortcomings that limit their practical application, such as low healing strength (below a megapascal) and long healing times (hours). Here, we introduce high-strength synthetic proteins that self-heal micro- and macro-scale mechanical damage within a second by local heating. These materials are optimized systematically to improve their hydrogen-bonded nanostructure and network morphology, with programmable healing properties (2–23 MPa strength after 1 s of healing) that surpass by several orders of magnitude those of other natural and synthetic soft materials. Such healing performance creates new opportunities for bioinspired materials design, and addresses current limitations in self-healing materials for soft robotics and personal protective equipment. Protein-based materials for soft robotics that self-heal within a second while maintaining the high strength of the damaged area are reported.
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- 2020
23. Self-Assembly of Topologically Networked Protein-Ti
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Mert, Vural, Haoyue, Zhu, Abdon, Pena-Francesch, Huihun, Jung, Benjamin D, Allen, and Melik C, Demirel
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Titanium ,Electric Conductivity - Abstract
Hierarchical organization plays an important role in the stunning physical properties of natural and synthetic composites. Limits on the physical properties of such composites are generally defined by percolation theory and can be systematically altered using the volumetric filler fraction of the inorganic/organic phase. In natural composites, organic materials such as proteins that interact with inorganic filler materials can further alter the hierarchical order and organization of the composite
- Published
- 2020
24. Tunable thermal transport and reversible thermal conductivity switching in topologically networked bio-inspired materials
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Madhusudan Tyagi, John A. Tomko, Melik C. Demirel, Benjamin D. Allen, Huihun Jung, Patrick E. Hopkins, and Abdon Pena-Francesch
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Materials science ,Phonon ,Biomedical Engineering ,Biocompatible Materials ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,law.invention ,Responsivity ,Thermal conductivity ,Biomimetic Materials ,Biomimetics ,law ,Thermal ,Animals ,General Materials Science ,Electrical and Electronic Engineering ,Electrical conductor ,business.industry ,Decapodiformes ,Proteins ,Water ,Thermal Conductivity ,DNA ,Particle displacement ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,SQUID ,Vibration ,Phonons ,Optoelectronics ,Peptides ,0210 nano-technology ,business - Abstract
The dynamic control of thermal transport properties in solids must contend with the fact that phonons are inherently broadband. Thus, efforts to create reversible thermal conductivity switches have resulted in only modest on/off ratios, since only a relatively narrow portion of the phononic spectrum is impacted. Here, we report on the ability to modulate the thermal conductivity of topologically networked materials by nearly a factor of four following hydration, through manipulation of the displacement amplitude of atomic vibrations. By varying the network topology, or crosslinked structure, of squid ring teeth-based bio-polymers through tandem-repetition of DNA sequences, we show that this thermal switching ratio can be directly programmed. This on/off ratio in thermal conductivity switching is over a factor of three larger than the current state-of-the-art thermal switch, offering the possibility of engineering thermally conductive biological materials with dynamic responsivity to heat.
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- 2018
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25. Programmable Proton Conduction in Stretchable and Self-Healing Proteins
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Benjamin D. Allen, Melik C. Demirel, Madhusudan Tyagi, Huihun Jung, Abdon Pena-Francesch, and Michael A. Hickner
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0301 basic medicine ,Materials science ,Proton ,Tandem ,General Chemical Engineering ,02 engineering and technology ,General Chemistry ,Conductivity ,021001 nanoscience & nanotechnology ,Thermal conduction ,Inelastic neutron scattering ,law.invention ,SQUID ,03 medical and health sciences ,030104 developmental biology ,law ,Chemical physics ,Proton transport ,Materials Chemistry ,0210 nano-technology ,Electrical conductor - Abstract
Proton conduction is ubiquitous in nature and has many applications in energy and electronic technologies. Although protein based materials show bulk proton conduction 10 times lower than conventional ion-conducting materials, they have unique advantages including biocompatibility, self-healing, tunable structure, and fine-grained control of material properties via amino acid sequence. Here, we studied the bulk proton conduction of tandem repeat proteins and demonstrate that tandem repetition of sequences from squid ring teeth (SRT) proteins significantly and systematically enhances bulk proton transport properties. Inelastic neutron scattering experiments between 4 K and 350 K reveal that highly repetitive proteins show enhanced conductivity. Our highly repetitive proteins achieve higher proton conductivity than state-of-the-art biological proton conductors (with peak conductivities of 3.5 mS cm–1), as well as demonstrate unique self-healing characteristics. These proteins also exhibit exceptionally high...
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- 2018
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26. Mechanical Properties of Tandem-Repeat Proteins Are Governed by Network Defects
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Ralph H. Colby, Melik C. Demirel, Huihun Jung, Mo Segad, Abdon Pena-Francesch, and Benjamin D. Allen
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Quantitative Biology::Biomolecules ,Toughness ,Materials science ,Biomedical Engineering ,02 engineering and technology ,Elasticity (physics) ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Topological defect ,Biomaterials ,Shear modulus ,Tandem repeat ,Rheology ,Ultimate tensile strength ,0210 nano-technology ,Biological system ,Elastic modulus - Abstract
Topological defects in highly repetitive structural proteins strongly affect their mechanical properties. However, there are no universal rules for structure–property prediction in structural proteins due to high diversity in their repetitive modules. Here, we studied the mechanical properties of tandem-repeat proteins inspired by squid ring teeth proteins using rheology and tensile experiments as well as spectroscopic and X-ray techniques. We also developed a network model based on entropic elasticity to predict structure–property relationships for these proteins. We demonstrated that shear modulus, elastic modulus, and toughness scale inversely with the number of repeats in these proteins. Through optimization of structural repeats, we obtained highly efficient protein network topologies with 42 MJ/m3 ultimate toughness that are capable of withstanding deformations up to 350% when hydrated. Investigation of topological network defects in structural proteins will improve the prediction of mechanical prop...
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- 2018
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27. Structural Protein-Based Whispering Gallery Mode Resonators
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Melik C. Demirel, Abdon Pena-Francesch, Robert Shreiner, Huihun Jung, Huzeyfe Yilmaz, Sahin Kaya Ozdemir, Lan Yang, and Zaneta Belay
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Squid ,Materials science ,biology ,business.industry ,Doping ,Structural protein ,Nanotechnology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Optical switch ,Atomic and Molecular Physics, and Optics ,Electronic, Optical and Magnetic Materials ,010309 optics ,Crystallinity ,Resonator ,biology.animal ,0103 physical sciences ,Electrical and Electronic Engineering ,Whispering-gallery wave ,Photonics ,0210 nano-technology ,business ,human activities ,Biotechnology - Abstract
Nature provides a set of solutions for photonic structures that are finely tuned, organically diverse, and optically efficient. Exquisite knowledge of structure–property relationships in proteins aids in the design of materials with desired properties for building devices with novel functionalities, which are difficult to achieve or previously unattainable. Here we report whispering-gallery-mode (WGM) microresonators fabricated entirely from semicrystalline structural proteins (i.e., squid ring teeth, SRT, from Loligo vulgaris and its recombinant) with quality factors as high as 105. We first demonstrate versatility of protein-based devices via facile doping, engaging secondary structures. Then we investigate thermorefractivity and find that it increases with β-sheet crystallinity, which can be altered by methanol exposure and is higher in the selected recombinant SRT protein than its native counterpart. We present a set of photonic devices fabricated from SRT proteins such as add-drop filters and fibers....
- Published
- 2017
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28. Programmable molecular composites of tandem proteins with graphene oxide for efficient bimorph actuators
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Mauricio Terrones, Huihun Jung, Yu Lei, Benjamin D. Allen, Mert Vural, Abdon Pena-Francesch, and Melik C. Demirel
- Subjects
Materials science ,Fabrication ,Tandem ,Graphene ,Composite number ,Oxide ,Bimorph ,Nanotechnology ,Heterojunction ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,law.invention ,chemistry.chemical_compound ,chemistry ,law ,General Materials Science ,Composite material ,0210 nano-technology ,Layer (electronics) - Abstract
The rapid expansion in the spectrum of two-dimensional (2D) materials has driven research efforts on the fabrication of 2D composites and heterostructures. Highly ordered structure of 2D materials provides an excellent platform for controlling the ultimate structure and properties of the composite material with precision. However, limited control over the structure of the matrix phase and its interactions with highly ordered 2D materials results in defective composites with inferior performance. Here, we demonstrate the successful synthesis, integration, and characterization of hybrid 2D material systems consisting of tandem repeat (TR) proteins inspired by squid ring teeth and graphene oxide (GO). The TR protein layer acts as a unique programmable assembler for GO layers with precise control of interlayer distance of less than 1 nm. As an application, we further demonstrate thermal actuation using bimorph molecular composite films. Bimorph actuators made of molecular composite films (GO/TR) can lead to energy efficiencies 18 times higher than regular bimorph actuators consisting of a GO layer and a TR protein layer (i.e., conventional bulk composite of GO and TR). Additionally, molecular composite bimorph actuators can reach curvature values as high as 1.2 cm −1 by using TR proteins with higher molecular weight, which is 3 times higher than conventional GO and TR composites.
- Published
- 2017
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29. Kirigami Metastructures: Liquid‐Crystal‐Elastomer‐Actuated Reconfigurable Microscale Kirigami Metastructures (Adv. Mater. 25/2021)
- Author
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Metin Sitti, Hamed Shahsavan, Yingying Zhang, Abdon Pena-Francesch, Yubing Guo, and Mingchao Zhang
- Subjects
Materials science ,Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Nanotechnology ,Liquid crystal elastomer ,Microscale chemistry - Published
- 2021
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30. Self-Healing Textile: Enzyme Encapsulated Layer-by-Layer Structural Proteins
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Huihun Jung, Abdon Pena-Francesch, Melik C. Demirel, Walter J. Dressick, David E. Gaddes, Srinivas Tadigadapa, and Genevieve Dion
- Subjects
chemistry.chemical_classification ,Squid ,Textile ,Materials science ,biology ,business.industry ,Textiles ,Biomolecule ,Layer by layer ,Reproducibility of Results ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Polyelectrolyte ,0104 chemical sciences ,Crystallinity ,chemistry ,biology.animal ,Self-healing ,General Materials Science ,0210 nano-technology ,business ,Elastic modulus - Abstract
Self-healing materials, which enable an autonomous repair response to damage, are highly desirable for the long-term reliability of woven or nonwoven textiles. Polyelectrolyte layer-by-layer (LbL) films are of considerable interest as self-healing coatings due to the mobility of the components comprising the film. In this work mechanically stable self-healing films were fabricated through construction of a polyelectrolyte LbL film containing squid ring teeth (SRT) proteins. SRTs are structural proteins with unique self-healing properties and high elastic modulus in both dry and wet conditions (2 GPa) due to their semicrystalline architecture. We demonstrate LbL construction of multilayers containing native and recombinant SRT proteins capable of self-healing defects. Additionally, we show these films are capable of utilizing functional biomolecules by incorporating an enzyme into the SRT multilayer. Urease was chosen as a model enzyme of interest to test its activity via fluorescence assay. Successful construction of the SRT films demonstrates the use of mechanically stable self-healing coatings, which can incorporate biomolecules for more complex protective functionalities for advanced functional fabrics.
- Published
- 2016
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- View/download PDF
31. Microrobots: Zwitterionic 3D‐Printed Non‐Immunogenic Stealth Microrobots (Adv. Mater. 42/2020)
- Author
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Devin Sheehan, Oncay Yasa, Metin Sitti, Ugur Bozuyuk, Abdon Pena-Francesch, Salvador Borrós, and Pol Cabanach
- Subjects
3d printed ,Materials science ,Mechanics of Materials ,Mechanical Engineering ,General Materials Science ,Nanotechnology - Published
- 2020
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- View/download PDF
32. Zwitterionic 3D‐Printed Non‐Immunogenic Stealth Microrobots
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Metin Sitti, Abdon Pena-Francesch, Ugur Bozuyuk, Devin Sheehan, Oncay Yasa, Salvador Borrós, Pol Cabanach, Sitti, Metin (ORCID 0000-0001-8249-3854 & YÖK ID 297104), Cabanach, Poi, Pena-Francesch, Abdon, Sheehan, Devin, Bozüyük, Uğur, Yaşa, Öncay, Borros, Salvador, School of Medicine, College of Engineering, and Department of Mechanical Engineering
- Subjects
zwitterionic materials ,3d printed ,Materials science ,two‐photon polymerization ,Surface Properties ,Nanotechnology ,02 engineering and technology ,non-immunogenic properties ,010402 general chemistry ,01 natural sciences ,Microprinting ,Article ,Macrophages ,Non-immunogenic properties ,Stealth microrobots ,Two-photon polymerization ,Zwitterionic materials ,Materials Testing ,General Materials Science ,Magnetic actuation ,Immune Evasion ,Mechanical Phenomena ,non‐immunogenic properties ,macrophages ,stealth microrobots ,Mechanical Engineering ,Chemistry ,Science and technology ,Physics ,Hydrogels ,Robotics ,021001 nanoscience & nanotechnology ,Biocompatible material ,0104 chemical sciences ,two-photon polymerization ,Mechanics of Materials ,Printing, Three-Dimensional ,Drug delivery ,Microtechnology ,0210 nano-technology - Abstract
Microrobots offer transformative solutions for non-invasive medical interventions due to their small size and untethered operation inside the human body. However, they must face the immune system as a natural protection mechanism against foreign threats. Here, non-immunogenic stealth zwitterionic microrobots that avoid recognition from immune cells are introduced. Fully zwitterionic photoresists are developed for two-photon polymerization 3D microprinting of hydrogel microrobots with ample functionalization: tunable mechanical properties, anti-biofouling and non-immunogenic properties, functionalization for magnetic actuation, encapsulation of biomolecules, and surface functionalization for drug delivery. Stealth microrobots avoid detection by macrophage cells of the innate immune system after exhaustive inspection (>90 hours), which has not been achieved in any microrobotic platform to date. These versatile zwitterionic materials eliminate a major roadblock in the development of biocompatible microrobots, and will serve as a toolbox of non-immunogenic materials for medical microrobot and other device technologies for bioengineering and biomedical applications., Advanced Materials, 32 (42), ISSN:0935-9648, ISSN:1521-4095
- Published
- 2020
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33. Contextualizing technology in the classroom via remote access: using space exploration themes and scanning electron microscopy as tools to promote engagement in multidisciplinary geology/chemistry experiments
- Author
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Abdon Pena-Francesch, Esteban Bautista, Alexandra Brouke, Vanessa Wolf, Andrea Melendez, Jared Ashcroft, Veronica Jaramillo, Ashley Min, Brandon A. Rodriguez, Joseph Amann, and Jennifer Portillo
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Geologia -- Ensenyament ,Technology ,Geology--Study and teaching ,lcsh:Technology ,Ensenyament -- Innovacions ,Session (web analytics) ,Space exploration ,Education ,Education--Experimental methods ,Ensenyament -- Multimèdia interactius ,Multidisciplinary approach ,Mathematics education ,0501 psychology and cognitive sciences ,Chemistry (relationship) ,lcsh:LC8-6691 ,Engagement ,Science instruction ,lcsh:Special aspects of education ,Chemistry--Study and teaching ,lcsh:T ,Chemistry ,05 social sciences ,Educational innovations ,Química -- Ensenyament ,050301 education ,Geology ,Ensenyament -- Mètodes experimentals ,lcsh:TA1-2040 ,Remote access, technology, engagement, geology, chemistry ,Remote access ,lcsh:L ,lcsh:Engineering (General). Civil engineering (General) ,Ensenyament i aprenentatge [Àrees temàtiques de la UPC] ,0503 education ,Tecnologia -- Ensenyament ,lcsh:Education ,050104 developmental & child psychology - Abstract
A multidisciplinary science experiment was performed in K-12 classrooms focusing on the interconnection of technology with geology and chemistry. The engagement and passion for science of over eight hundred students across twenty-one classrooms, utilizing a combination of hands-on activities to study the relationships between Earth and space rock studies, followed by a remote access session wherein students remotely employed the use of a scanning electron microscope (SEM) and energy-dispersive spectroscopy (EDS) to validate their findings was investigated. Participants were from predominantly low-income minority communities, with little exposure to the themes and equipment used, despite being freely available resources. Students indicated greatly increased interest in scientific practices and careers, as well as a better grasp of the content as a result of the lab and remote access coupling format.
- Published
- 2018
34. Ultrafast laser-probing spectroscopy for studying molecular structure of protein aggregates
- Author
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Huihun Jung, John A. Tomko, Melik C. Demirel, Benjamin D. Allen, Chester J. Szwejkowski, Abdon Pena-Francesch, Sahin Kaya Ozdemir, and Patrick E. Hopkins
- Subjects
0301 basic medicine ,Chemistry ,Infrared spectroscopy ,02 engineering and technology ,Protein aggregation ,021001 nanoscience & nanotechnology ,Biochemistry ,Fluorescence ,Analytical Chemistry ,law.invention ,03 medical and health sciences ,Crystallinity ,030104 developmental biology ,In vivo ,law ,Electrochemistry ,Recombinant DNA ,Environmental Chemistry ,0210 nano-technology ,Spectroscopy ,Immunostaining - Abstract
We report the development of a new technique to screen protein aggregation based on laser-probing spectroscopy with sub-picosecond resolution. Protein aggregation is an important topic for materials science, fundamental biology as well as clinical studies in neurodegenerative diseases and translation studies in biomaterials engineering. However, techniques to study protein aggregation and assembly are limited to infrared spectroscopy, fluorescent assays, immunostaining, or functional assays among others. Here, we report a new technique to characterize protein structure-property relationship based on ultrafast laser-probing spectroscopy. First, we show theoretically that the temperature dependence of the refractive index of a protein is correlated to its crystallinity. Then, we performed time-domain thermo-transmission experiments on purified semi-crystalline proteins, both native and recombinant (i.e., silk and squid ring teeth), and also on intact E. coli cells bearing overexpressed recombinant protein. Our results demonstrate, for the first time, relative quantification of crystallinity in real time for protein aggregates. Our approach can potentially be used for screening an ultra-large number of proteins in vivo. Using this technique, we could answer many fundamental questions in structural protein research, such as the underlying sequence-structure relationship for protein assembly and aggregation.
- Published
- 2017
35. Recent Advances in Nanoscale Bioinspired Materials
- Author
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Murat Cetinkaya, Huihun Jung, Abdon Pena-Francesch, and Melik C. Demirel
- Subjects
Engineering ,Polymers and Plastics ,Natural materials ,business.industry ,Human life ,Bioengineering ,Nanotechnology ,Synthetic materials ,Biomaterials ,Materials Chemistry ,Computational design ,business ,Exploitation of natural resources ,Biotechnology - Abstract
Natural materials have been a fundamental part of human life since the dawn of civilization. However, due to exploitation of natural resources and cost issues, synthetic materials replaced bio-derived materials in the last century. Recent advances in bio- and nano-technologies pave the way for developing eco-friendly materials that could be produced easily from renewable resources at reduced cost and in a broad array of useful applications. This feature article highlights structural and functional characteristics of bio-derived materials, which will expedite the design fabrication and synthesis of eco-friendly and recyclable advanced nano-materials and devices.
- Published
- 2014
- Full Text
- View/download PDF
36. Materials Fabrication from Native and Recombinant Thermoplastic Squid Proteins
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Istvan Albert, Abdon Pena-Francesch, Wayne R. Curtis, Aswathy Sebastian, Huihun Jung, Melik C. Demirel, and Sergio Florez
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chemistry.chemical_classification ,Squid ,Thermoplastic ,Materials science ,Fabrication ,biology ,Thermoplastic materials ,Nanotechnology ,Condensed Matter Physics ,Elastomer ,Electronic, Optical and Magnetic Materials ,law.invention ,Biomaterials ,chemistry.chemical_compound ,chemistry ,law ,biology.animal ,Electrochemistry ,Recombinant DNA ,Synthetic oil ,Thin film - Abstract
Natural elastomers made from protein extracts have received significant interest as eco-friendly functional materials due to their unique mechanical and optical properties emanating from secondary structures. The next generation sequencing approach is used to identify protein sequences in a squid ring teeth complex extracted from Loligo vulgaris and the use of recombinant expression is demonstrated in the fabrication of a new generation of thermoplastic materials. Native and recombinant thermoplastic squid proteins exhibit reversible solid to melt phase transition, enabling them to be thermally shaped into 3D geometries such as fibers, colloids, and thin films. Direct extraction or recombinant expression of protein based thermoplastics opens up new avenues for materials fabrication and synthesis, which will eventually be competitive with the high-end synthetic oil based plastics.
- Published
- 2014
- Full Text
- View/download PDF
37. Tailoring the LCST of Thermosensitive Hydrogel Thin Films Deposited by iCVD
- Author
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Salvador Borrós, Laura Montero, and Abdon Pena-Francesch
- Subjects
chemistry.chemical_classification ,Materials science ,Comonomer ,technology, industry, and agriculture ,Surfaces and Interfaces ,Polymer ,Quartz crystal microbalance ,Condensed Matter Physics ,Lower critical solution temperature ,Contact angle ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Polymerization ,Self-healing hydrogels ,Polymer chemistry ,Electrochemistry ,Copolymer ,General Materials Science ,Spectroscopy - Abstract
Using the iCVD (initiated chemical vapor deposition) polymerization technique, we generated a library of thermosensitive thin film hydrogels in the physiological temperature range. The library shows how a specific hydrogel with a desired temperature response can be synthesized via the copolymerization of three main components: (a) the main thermosensitive monomer, which determines the temperature range of the LCST; (b) the comonomer, which modulates the temperature according to its hydrophilic/hydrophobic behavior; and (c) the cross-linker, which determines the swelling degree and the polymer chain mobility of the resulting hydrogel. The thermosensitive thin films included in the library have been characterized by the water contact angle (WCA), revealing a switchable hydrophobic/hydrophilic behavior depending on the temperature and a decrease in the WCA with the incorporation of hydrophilic moieties. Moreover, a more accurate characterization by quartz crystal microbalance (QCM) is performed. With temperature and flow control, the switchable swelling properties of the thermosensitive thin films (due to the polymer mixture transition) can be recorded and analyzed in order to study the effects of the comonomer moieties on the lower critical solution temperature (LCST). Thus, the LCST tailoring method has been successfully used in this paper, and thermoresponsive thin films (50 nm in thickness) have been deposited by iCVD, exhibiting LCSTs in the 32-49 °C range. Due to the presented method's ability to tailor the LCST in the physiological temperature range, the developed thermoresponsive films present potential biosensing and drug delivery applications in the biomedical field.
- Published
- 2014
- Full Text
- View/download PDF
38. Ultrafast Laser-Probing Spectrocopy for Studying Molecular Structure of Polymeric Proteins
- Author
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Benjamin D. Allen, Huihun Jung, Chester J. Szwejkowski, Melik C. Demirel, Abdon Pena-Francesch, Sahin Kaya Ozdemir, and Patrick E. Hopkins
- Subjects
Squid ,biology ,Resolution (mass spectrometry) ,Chemistry ,technology, industry, and agriculture ,eye diseases ,law.invention ,Crystallinity ,SILK ,In vivo ,law ,biology.animal ,Recombinant DNA ,Biophysics ,Molecule ,sense organs ,Spectroscopy - Abstract
We report the development of a new technique to screen protein crystallinity quantitatively based on laser-probing spectroscopy with sub-picosecond resolution. First, we show theoretically that the temperature dependence of the refractive index of a polymeric protein is correlated to its crystallinity. Then, we performed time-domain thermo-transmission experiments on purified semi-crystalline proteins, both native and recombinant (i.e., silk and squid ring teeth), and also on intactE. colicells bearing overexpressed recombinant protein. Our results demonstrate, for the first time, quantification of crystallinity in real time for polymeric proteins. Our approach can potentially be used for screening an ultra-large number of polymeric proteinsin vivo.
- Published
- 2016
- Full Text
- View/download PDF
39. Molecular tandem repeat strategy for elucidating mechanical properties of high-strength proteins
- Author
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Benjamin D. Allen, Abdon Pena-Francesch, Melik C. Demirel, Istvan Albert, Huihun Jung, Aswathy Sebastian, Dong Hwan Kim, Alham Saadat, and Reginald F. Hamilton
- Subjects
0301 basic medicine ,Toughness ,Materials science ,02 engineering and technology ,03 medical and health sciences ,Tandem repeat ,biology.animal ,Copolymer ,Animals ,Mechanical Phenomena ,Squid ,Multidisciplinary ,Molecular mass ,biology ,Tandem ,Decapodiformes ,Proteins ,Biological Sciences ,021001 nanoscience & nanotechnology ,Amorphous solid ,Crystallography ,030104 developmental biology ,Tandem Repeat Sequences ,0210 nano-technology ,Peptides ,human activities ,Function (biology) - Abstract
Many globular and structural proteins have repetitions in their sequences or structures. However, a clear relationship between these repeats and their contribution to the mechanical properties remains elusive. We propose a new approach for the design and production of synthetic polypeptides that comprise one or more tandem copies of a single unit with distinct amorphous and ordered regions. Our designed sequences are based on a structural protein produced in squid suction cups that has a segmented copolymer structure with amorphous and crystalline domains. We produced segmented polypeptides with varying repeat number, while keeping the lengths and compositions of the amorphous and crystalline regions fixed. We showed that mechanical properties of these synthetic proteins could be tuned by modulating their molecular weights. Specifically, the toughness and extensibility of synthetic polypeptides increase as a function of the number of tandem repeats. This result suggests that the repetitions in native squid proteins could have a genetic advantage for increased toughness and flexibility.
- Published
- 2016
40. Protein-based flexible whispering gallery mode resonators
- Author
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Sahin Kaya Ozdemir, Linhua Xu, Melik C. Demirel, Steven H. Huang, Lan Yang, Robert Shreiner, Huihun Jung, Huzeyfe Yilmaz, and Abdon Pena-Francesch
- Subjects
chemistry.chemical_classification ,Materials science ,business.industry ,Natural polymers ,Nanotechnology ,02 engineering and technology ,Polymer ,021001 nanoscience & nanotechnology ,01 natural sciences ,Characterization (materials science) ,Resonator ,chemistry ,0103 physical sciences ,Biomimetics ,Whispering-gallery wave ,Photonics ,010306 general physics ,0210 nano-technology ,business ,Microscale chemistry - Abstract
The idea of creating photonics tools for sensing, imaging and material characterization has long been pursued and many achievements have been made. Approaching the level of solutions provided by nature however is hindered by routine choice of materials. To this end recent years have witnessed a great effort to engineer mechanically flexible photonic devices using polymer substrates. On the other hand, biodegradability and biocompatibility still remains to be incorporated. Hence biomimetics holds the key to overcome the limitations of traditional materials in photonics design. Natural proteins such as sucker ring teeth (SRT) and silk for instance have remarkable mechanical and optical properties that exceed the endeavors of most synthetic and natural polymers. Here we demonstrate for the first time, toroidal whispering gallery mode resonators (WGMR) fabricated entirely from protein structures such as SRT of Loligo vulgaris (European squid) and silk from Bombyx mori. We provide here complete optical and material characterization of proteinaceous WGMRs, revealing high quality factors in microscale and enhancement of Raman signatures by a microcavity. We also present a most simple application of a WGMR as a natural protein add-drop filter, made of SRT protein. Our work shows that with protein-based materials, optical, mechanical and thermal properties can be devised at the molecular level and it lays the groundwork for future eco-friendly, flexible photonics device design.
- Published
- 2016
- Full Text
- View/download PDF
41. Inkjet Printing of Self‐Assembled 2D Titanium Carbide and Protein Electrodes for Stimuli‐Responsive Electromagnetic Shielding
- Author
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Yury Gogotsi, Melik C. Demirel, Mert Vural, Abdon Pena-Francesch, Ibrahim T. Ozbolat, Hemanth Gudapati, Christine B. Hatter, Babak Anasori, Huihun Jung, Joan Bars-Pomes, and Benjamin D. Allen
- Subjects
Synthetic protein ,Materials science ,Titanium carbide ,Stimuli responsive ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Electronic, Optical and Magnetic Materials ,Self assembled ,Biomaterials ,chemistry.chemical_compound ,chemistry ,Electrode ,Electromagnetic shielding ,Electrochemistry ,Electromagnetic interference shielding ,0210 nano-technology ,Inkjet printing - Published
- 2018
- Full Text
- View/download PDF
42. Research Update: Programmable tandem repeat proteins inspired by squid ring teeth
- Author
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Yusuke Kikuchi, Benjamin Barbu, Natalia E. Domeradzka, Benjamin D. Allen, Melik C. Demirel, Huihun Jung, Mert Vural, and Abdon Pena-Francesch
- Subjects
0301 basic medicine ,chemistry.chemical_classification ,Squid ,Materials science ,biology ,Biocompatibility ,lcsh:Biotechnology ,Molecular biophysics ,General Engineering ,Nanotechnology ,02 engineering and technology ,Polymer ,021001 nanoscience & nanotechnology ,Ring (chemistry) ,lcsh:QC1-999 ,03 medical and health sciences ,030104 developmental biology ,chemistry ,Tandem repeat ,lcsh:TP248.13-248.65 ,biology.animal ,General Materials Science ,0210 nano-technology ,lcsh:Physics - Abstract
Cephalopods have evolved many interesting features that can serve as inspiration. Repetitive squid ring teeth (SRT) proteins from cephalopods exhibit properties such as strength, self-healing, and biocompatibility. These proteins have been engineered to design novel adhesives, self-healing textiles, and the assembly of 2d-layered materials. Compared to conventional polymers, repetitive proteins are easy to modify and can assemble in various morphologies and molecular architectures. This research update discusses the molecular biology and materials science of polypeptides inspired by SRT proteins, their properties, and perspectives for future applications.
- Published
- 2018
- Full Text
- View/download PDF
43. Segmented molecular design of self-healing proteinaceous materials
- Author
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Metin Sitti, Carlos Pacheco, Melik C. Demirel, Murat Cetinkaya, Huihun Jung, Abdon Pena-Francesch, Veikko Sariola, Department of Electrical Engineering and Automation, Pennsylvania State University, BASF, Max Planck Institute for Intelligent Systems, Aalto-yliopisto, and Aalto University
- Subjects
ta214 ,Multidisciplinary ,Materials science ,ta213 ,Genetically engineered ,Temperature ,Rational design ,Protein engineering ,Molecular Dynamics Simulation ,Protein Engineering ,Protein Structure, Secondary ,Recombinant Proteins ,Article ,Nanostructures ,Molecular dynamics ,Protein structure ,Self-healing ,Spectroscopy, Fourier Transform Infrared ,Solvents ,Biophysics ,Amino Acid Sequence ,Heterologous expression ,Wetting - Abstract
Hierarchical assembly of self-healing adhesive proteins creates strong and robust structural and interfacial materials, but understanding of the molecular design and structure–property relationships of structural proteins remains unclear. Elucidating this relationship would allow rational design of next generation genetically engineered self-healing structural proteins. Here we report a general self-healing and -assembly strategy based on a multiphase recombinant protein based material. Segmented structure of the protein shows soft glycine- and tyrosine-rich segments with self-healing capability and hard beta-sheet segments. The soft segments are strongly plasticized by water, lowering the self-healing temperature close to body temperature. The hard segments self-assemble into nanoconfined domains to reinforce the material. The healing strength scales sublinearly with contact time, which associates with diffusion and wetting of autohesion. The finding suggests that recombinant structural proteins from heterologous expression have potential as strong and repairable engineering materials.
- Published
- 2015
- Full Text
- View/download PDF
44. Biomimicry of the Manduca Sexta Forewing Using SRT Protein Complex for FWMAV Development
- Author
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Melik C. Demirel, Asheesh Lanba, Abdon Pena-Francesch, Kenneth C. Moses, Roger D. Quinn, Simone C. Michaels, Richard J. Bachmann, and Reginald F. Hamilton
- Subjects
Physics ,Wing ,biology ,Manduca sexta ,Mechanical integrity ,Anatomy ,Biomimetics ,biology.organism_classification ,Biological system ,Frequency spectrum ,Flapping wing - Abstract
A new thermoplastic protein complex, Squid Ring Teeth SRT, has been adapted for use in the artificial reconstruction of a Manduca sexta wing. The SRT protein complex exhibits consistent material properties over a wide range of temperatures 25i¾?C to 196i¾?C and retains it mechanical integrity across a large frequency spectrum 0.1 Hz to 150 Hz. Insect-inspired wings comprised of SRT can therefore be reliable and robust, which are essential characteristics for flapping wing MAVs FWMAV. The preliminary results in this paper suggest that a thorough analysis of an SRT-based wing be conducted using load cell, optical digitization, and PIV techniques. With these results, we believe it will be possible to accurately mimic the M. sexta wing in order to pave the way for next generation FWMAV development.
- Published
- 2015
- Full Text
- View/download PDF
45. Recent advances in nanoscale bioinspired materials
- Author
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Melik C, Demirel, Murat, Cetinkaya, Abdon, Pena-Francesch, and Huihun, Jung
- Subjects
Biomimetics ,Decapodiformes ,Animals ,Nanoparticles ,Biocompatible Materials - Abstract
Natural materials have been a fundamental part of human life since the dawn of civilization. However, due to exploitation of natural resources and cost issues, synthetic materials replaced bio-derived materials in the last century. Recent advances in bio- and nano-technologies pave the way for developing eco-friendly materials that could be produced easily from renewable resources at reduced cost and in a broad array of useful applications. This feature article highlights structural and functional characteristics of bio-derived materials, which will expedite the design fabrication and synthesis of eco-friendly and recyclable advanced nano-materials and devices.
- Published
- 2014
46. Pressure sensitive adhesion of an elastomeric protein complex extracted from squid ring teeth
- Author
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Abdon Pena-Francesch, Bulent Akgun, Melik C. Demirel, Ali Miserez, Wenpeng Zhu, Huajian Gao, School of Materials Science & Engineering, and School of Biological Sciences
- Subjects
chemistry.chemical_classification ,Squid ,Materials science ,Thermoplastic ,biology ,Adhesion ,Condensed Matter Physics ,Elastomer ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Engineering::Materials [DRNTU] ,Colloid ,chemistry ,biology.animal ,Electrochemistry ,Adhesive ,Thin film ,Composite material ,Glass transition ,human activities - Abstract
The pressure sensitive adhesion characteristic of a protein complex extracted from squid ring teeth (SRT), which exhibits an unusual and reversible transition from a solid to a melt, is studied. The native SRT is an elastomeric protein complex that has standard amino acids, and it does not function as adhesives in nature. The SRT can be thermally shaped into any 3D geometry (e.g., thin films, ribbons, colloids), and it has a glass transition temperature of 32 °C in water. Underwater adhesion strength of the protein film is approximately 1.5–2.5 MPa. The thermoplastic protein film could potentially be used in an array of fields, including dental resins, bandages for wound healing, and surgical sutures in the body.
- Published
- 2014
47. Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science
- Author
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Ali Miserez, Dawei Ding, Yiqi Seow, Shawn Hoon, Paul A. Guerette, Admir Masic, Fong Tian Wong, Gavin Z. Tay, Kiat Whye Kong, Manfred Raida, Vincent H.B. Ho, Abdon Pena-Francesch, Melik C. Demirel, Shahrouz Amini, School of Materials Science & Engineering, and School of Biological Sciences
- Subjects
Proteomics ,Aquatic Organisms ,Biomimetic materials ,Genomic data ,Molecular Sequence Data ,Silk ,Biomedical Engineering ,New materials ,Bioengineering ,Nanotechnology ,Computational biology ,Protein Engineering ,Applied Microbiology and Biotechnology ,Biomaterials ,Biomimetic Materials ,Biomimetics ,Spectroscopy, Fourier Transform Infrared ,Animals ,Amino Acid Sequence ,Ovum ,Natural materials ,Sequence Analysis, RNA ,Adhesiveness ,Animal Structures ,Recombinant Proteins ,Biological materials ,Characterization (materials science) ,Molecular Medicine ,Biotechnology - Abstract
Efforts to engineer new materials inspired by biological structures are hampered by the lack of genomic data from many model organisms studied in biomimetic research. Here we show that biomimetic engineering can be accelerated by integrating high-throughput RNA-seq with proteomics and advanced materials characterization. This approach can be applied to a broad range of systems, as we illustrate by investigating diverse high-performance biological materials involved in embryo protection, adhesion and predation. In one example, we rapidly engineer recombinant squid sucker ring teeth proteins into a range of structural and functional materials, including nanopatterned surfaces and photo-cross-linked films that exceed the mechanical properties of most natural and synthetic polymers. Integrating RNA-seq with proteomics and materials science facilitates the molecular characterization of natural materials and the effective translation of their molecular designs into a wide range of bio-inspired materials. NRF (Natl Research Foundation, S’pore) ASTAR (Agency for Sci., Tech. and Research, S’pore) MOE (Min. of Education, S’pore)
- Published
- 2013
48. Proteins: Materials Fabrication from Native and Recombinant Thermoplastic Squid Proteins (Adv. Funct. Mater. 47/2014)
- Author
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Melik C. Demirel, Istvan Albert, Wayne R. Curtis, Abdon Pena-Francesch, Sergio Florez, Huihun Jung, and Aswathy Sebastian
- Subjects
chemistry.chemical_classification ,Squid ,Materials science ,Fabrication ,Thermoplastic ,biology ,Nanotechnology ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,law.invention ,Biomaterials ,chemistry ,law ,biology.animal ,Electrochemistry ,Recombinant DNA - Published
- 2014
- Full Text
- View/download PDF
49. Soft actuators for real-world applications
- Author
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Meng Li, Metin Sitti, Amirreza Aghakhani, Aniket Pal, and Abdon Pena-Francesch
- Subjects
Computer science ,business.industry ,media_common.quotation_subject ,Wearable computer ,Control engineering ,Adaptability ,Article ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Biomaterials ,Grippers ,Scalability ,Materials Chemistry ,Robot ,Artificial muscle ,business ,Energy (miscellaneous) ,media_common ,Haptic technology ,Agile software development - Abstract
Inspired by physically adaptive, agile, reconfigurable and multifunctional soft-bodied animals and human muscles, soft actuators have been developed for a variety of applications, including soft grippers, artificial muscles, wearables, haptic devices and medical devices. However, the complex performance of biological systems cannot yet be fully replicated in synthetic designs. In this Review, we discuss new materials and structural designs for the engineering of soft actuators with physical intelligence and advanced properties, such as adaptability, multimodal locomotion, self-healing and multi-responsiveness. We examine how performance can be improved and multifunctionality implemented by using programmable soft materials, and highlight important real-world applications of soft actuators. Finally, we discuss the challenges and opportunities for next-generation soft actuators, including physical intelligence, adaptability, manufacturing scalability and reproducibility, extended lifetime and end-of-life strategies. Soft actuators are flexible and compliant and thus perfectly suited to interact with the human body. This Review discusses tethered, untethered and biohybrid soft actuation strategies, highlights promising real-world applications of soft robots and identifies key future challenges, such as implementing physical intelligence and end-of-life strategies.
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