95 results on '"Aaron D. Smith"'
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2. State of knowledge of the Tenebrionidae (Insecta: Coleoptera) in Colombia based on bibliographic revision
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Oscar Ascuntar-Osnas, Pablo A. López-Bedoya, Aaron D. Smith, M. Andrew Johnston, and Jennifer C. Girón
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darklingbeetles ,biodiversity ,neotropical region ,checklist ,distribution ,Science ,Zoology ,QL1-991 ,Botany ,QK1-989 - Abstract
Tenebrionidae is one of the most diverse families in Coleoptera. However, research on the family in Colombia is limited. Based on a comprehensive literature review, a list of tenebrionid species known from the country was compiled and the state of knowledge is analyzed. Based on this information, the Ten-ebrionidae in Colombia are represented by 326 species, organized into 95 genera (seven subgenera), 30 tribes, and nine subfamilies. Cundinamarca, including Bogotá, presents the highest number of recorded species with 52, followed by Valle del Cauca with sixteen, and Bolívar with thirteen; eight departments have records for only a single species, and ten do not have records of any tenebrionid species. Potential reasons for the historically limited research on Colombian tenebrionids are discussed and actions to reduce these knowledge gaps are proposed.
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- 2023
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3. Rapid, high-titer biosynthesis of melanin using the marine bacterium Vibrio natriegens
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Aaron D. Smith, Tanya Tschirhart, Jaimee Compton, Tiffany M. Hennessa, Eric VanArsdale, and Zheng Wang
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Vibrio natriegens ,melanin ,melanin biosynthesis ,tyrosinase ,tyrosine ,biomanufacturing ,Biotechnology ,TP248.13-248.65 - Abstract
Melanin is one of the most abundant natural biomolecules on Earth. These macromolecular biopolymers display several unique physical and chemical properties and have garnered interest as biomaterials for various commercial and industrial applications. To this end, extensive research has gone into refining methods for the synthesis and extraction of melanin from natural and recombinant sources. In this study, we developed and refined a procedure using a recombinant microbial system for the biosynthesis of melanin using the tyrosinase enzyme Tyr1 and tyrosine as a substrate. Using the emergent microbial chassis organisms Vibrio natriegens, we achieved maximal yields of 7.57 g/L, and one of the highest reported volumetric productivities of 473 mg L−1 h−1 with 100% conversion rates in an optimized, minimally defined medium. Additionally, we identified and investigated the use of a native copper responsive promoter in V. natriegens for stringent regulation of heterologous protein expression as a cost effective alternative to traditional IPTG-based induction. This research represents a promising advancement towards a green, rapid, and economical alternative for the biomanufacture of melanin.
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- 2023
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4. Recovery and analysis of ancient beetle DNA from subfossil packrat middens using high-throughput sequencing
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Aaron D. Smith, Marcin J. Kamiński, Kojun Kanda, Andrew D. Sweet, Julio L. Betancourt, Camille A. Holmgren, Elisabeth Hempel, Federica Alberti, and Michael Hofreiter
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Medicine ,Science - Abstract
Abstract The study of ancient DNA is revolutionizing our understanding of paleo-ecology and the evolutionary history of species. Insects are essential components in many ecosystems and constitute the most diverse group of animals. Yet they are largely neglected in ancient DNA studies. We report the results of the first targeted investigation of insect ancient DNA to positively identify subfossil insects to species, which includes the recovery of endogenous content from samples as old as ~ 34,355 ybp. Potential inhibitors currently limiting widespread research on insect ancient DNA are discussed, including the lack of closely related genomic reference sequences (decreased mapping efficiency) and the need for more extensive collaborations with insect taxonomists. The advantages of insect-based studies are also highlighted, especially in the context of understanding past climate change. In this regard, insect remains from ancient packrat middens are a rich and largely uninvestigated resource for exploring paleo-ecology and species dynamics over time.
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- 2021
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5. Different Strategies Affect Enzyme Packaging into Bacterial Outer Membrane Vesicles
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Scott N. Dean, Meghna Thakur, Joseph R. Spangler, Aaron D. Smith, Sean P. Garin, Scott A. Walper, and Gregory A. Ellis
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outer membrane vesicles (OMVs) ,phosphotriesterase (PTE) ,diisopropyl fluorophosphatase (DFPase) ,Technology ,Biology (General) ,QH301-705.5 - Abstract
All Gram-negative bacteria are believed to produce outer membrane vesicles (OMVs), proteoliposomes shed from the outermost membrane. We previously separately engineered E. coli to produce and package two organophosphate (OP) hydrolyzing enzymes, phosphotriesterase (PTE) and diisopropylfluorophosphatase (DFPase), into secreted OMVs. From this work, we realized a need to thoroughly compare multiple packaging strategies to elicit design rules for this process, focused on (1) membrane anchors or periplasm-directing proteins (herein “anchors/directors”) and (2) the linkers connecting these to the cargo enzyme; both may affect enzyme cargo activity. Herein, we assessed six anchors/directors to load PTE and DFPase into OMVs: four membrane anchors, namely, lipopeptide Lpp’, SlyB, SLP, and OmpA, and two periplasm-directing proteins, namely, maltose-binding protein (MBP) and BtuF. To test the effect of linker length and rigidity, four different linkers were compared using the anchor Lpp’. Our results showed that PTE and DFPase were packaged with most anchors/directors to different degrees. For the Lpp’ anchor, increased packaging and activity corresponded to increased linker length. Our findings demonstrate that the selection of anchors/directors and linkers can greatly influence the packaging and bioactivity of enzymes loaded into OMVs, and these findings have the potential to be utilized for packaging other enzymes into OMVs.
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- 2023
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6. Taxonomic revision of the genus Machleida Fåhraeus, 1870 (Tenebrionidae, Pimeliinae, Asidini)
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Marcin J. Kamiński, Kojun Kanda, and Aaron D. Smith
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Zoology ,QL1-991 - Abstract
The taxonomic concept of the genus Machleida Fåhraeus, 1870 is tested and revised based on newly identified material. The following new species are described: Machleida banachi, M. flagstaffensis, M. tarskii, and M. zofiae Kamiński. Machleida capillosa Wilke, 1925 is considered as a junior subjective synonym of Asida devia Péringuey, 1899. Asida lecta Péringuey, 1899 (= Pseudomachla recurva Wilke, 1925) (transferred to Afrasida), Machleida nossibiana Fairmaire, 1897 (transferred to Scotinesthes), and Machleida tuberosa Wilke, 1925 (interpreted as incertae sedis in Asidini) are excluded from Machleida. An identification key for the species of the newly revised Machleida is provided. The present paper brings the total number of species within the genus to six (M. banachi sp. nov.; M. devia (Péringuey, 1899); M. flagstaffensis sp. nov.; M. nodulosa Fåhraeus, 1870; M. tarskii sp. nov.; M. zofiae Kamiński sp. nov.). The morphology of female terminalia (ovipositor and genital tubes) is described for the genus for the first time.
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- 2019
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7. A catalogue of the tribe Sepidiini Eschscholtz, 1829 (Tenebrionidae, Pimeliinae) of the world
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Marcin J. Kamiński, Kojun Kanda, Ryan Lumen, Jonah M. Ulmer, Christopher C. Wirth, Patrice Bouchard, Rolf Aalbu, Noël Mal, and Aaron D. Smith
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Zoology ,QL1-991 - Abstract
This catalogue includes all valid family-group (six subtribes), genus-group (55 genera, 33 subgenera), and species-group names (1009 species and subspecies) of Sepidiini darkling beetles (Coleoptera: Tenebrionidae: Pimeliinae), and their available synonyms. For each name, the author, year, and page number of the description are provided, with additional information (e.g., type species for genus-group names, author of synonymies for invalid taxa, notes) depending on the taxon rank. Verified distributional records (loci typici and data acquired from revisionary publications) for all the species are gathered. Distribution of the subtribes is illustrated and discussed. Several new nomenclatural acts are included. The generic names Phanerotomea Koch, 1958 [= Ocnodes Fåhraeus, 1870] and Parmularia Koch, 1955 [= Psammodes Kirby, 1819] are new synonyms (valid names in square brackets). The following new combinations are proposed: Ocnodes acuductus acuductus (Ancey, 1883), O. acuductus ufipanus (Koch, 1952), O. adamantinus (Koch, 1952), O. argenteofasciatus (Koch, 1953), O. arnoldi arnoldi (Koch, 1952), O. arnoldi sabianus (Koch, 1952), O. barbosai (Koch, 1952), O. basilewskyi (Koch, 1952), O. bellmarleyi (Koch, 1952), O. benguelensis (Koch, 1952), O. bertolonii (Guérin-Méneville, 1844), O. blandus (Koch, 1952), O. brevicornis (Haag-Rutenberg, 1875), O. brunnescens brunnescens (Haag-Rutenberg, 1871), O. brunnescens molestus (Haag-Rutenberg, 1875), O. buccinator (Koch, 1952), O. bushmanicus (Koch, 1952), O. carbonarius (Gerstaecker, 1854), O. cardiopterus (Fairmaire, 1888), O. cataractus (Koch, 1952), O. cinerarius (Koch, 1952), O. complanatus (Koch, 1952), O. confertus (Koch, 1952), O. congruens (Péringuey, 1899), O. cordiventris (Haag-Rutenberg, 1871), O. crocodilinus (Koch, 1952), O. dimorphus (Koch, 1952), O. distinctus (Haag-Rutenberg, 1871), O. dolosus (Péringuey, 1899), O. dorsocostatus (Gebien, 1910), O. dubiosus (Péringuey, 1899), O. ejectus (Koch, 1952), O. epronoticus (Koch, 1952), O. erichsoni (Haag-Rutenberg, 1871), O. ferreirae ferreirae (Koch, 1952), O. ferreirae zulu (Koch, 1952), O. fettingi (Haag-Rutenberg, 1875), O. fistucans (Koch, 1952), O. fraternus (Haag-Rutenberg, 1875), O. freyi (Koch, 1952), O. freudei (Koch, 1952), O. fulgidus (Koch, 1952), O. funestus (Haag-Rutenberg, 1871), O. gemmeulus (Koch, 1952), O. gibberosulus (Péringuey, 1908), O. gibbus (Haag-Rutenberg, 1879), O. globosus (Haag-Rutenberg, 1871), O. granisterna (Koch, 1952), O. granulosicollis (Haag-Rutenberg, 1871), O. gridellii (Koch, 1960), O. guerini guerini (Haag-Rutenberg, 1871), O. guerini lawrencii (Koch, 1954), O. guerini mancus (Koch 1954), O. haemorrhoidalis haemorrhoidalis (Koch, 1952), O. haemorrhoidalis salubris (Koch, 1952), O. heydeni (Haag-Rutenberg, 1871), O. humeralis (Haag-Rutenberg, 1871), O. humerangula (Koch, 1952), O. imbricatus (Koch, 1952), O. imitator imitator (Péringuey, 1899), O. imitator invadens (Koch, 1952), O. inflatus (Koch, 1952), O. janssensi (Koch, 1952), O. javeti (Haag-Rutenberg, 1871), O. junodi (Péringuey, 1899), O. kulzeri (Koch, 1952), O. lacustris (Koch, 1952), O. laevigatus (Olivier, 1795), O. lanceolatus (Koch, 1953), O. licitus (Peringey, 1899), O. luctuosus (Haag-Rutenberg, 1871), O. luxurosus (Koch, 1952), O. maputoensis (Koch, 1952), O. marginicollis (Koch, 1952), O. martinsi (Koch, 1952), O. melleus (Koch, 1952), O. mendicus estermanni (Koch, 1952), O. mendicus mendicus (Péringuey, 1899), O. miles (Péringuey, 1908), O. mimeticus (Koch, 1952), O. misolampoides (Fairmaire, 1888), O. mixtus (Haag-Rutenberg, 1871), O. monacha (Koch, 1952), O. montanus (Koch, 1952), O. mozambicus (Koch, 1952), O. muliebris curtus (Koch, 1952), O. muliebris muliebris (Koch, 1952), O. muliebris silvestris (Koch, 1952), O. nervosus (Haag-Rutenberg, 1871), O. notatum (Thunberg, 1787), O. notaticollis (Koch, 1952), O. odorans (Koch, 1952), O. opacus (Solier, 1843), O. osbecki (Billberg, 1815), O. overlaeti (Koch, 1952), O. ovulus (Haag-Rutenberg, 1871), O. pachysoma ornata (Koch, 1952), O. pachysoma pachysoma (Péringuey, 1892), O. papillosus (Koch, 1952), O. pedator (Fairmaire, 1888), O. perlucidus (Koch, 1952), O. planus (Koch, 1952), O. pretorianus (Koch, 1952), O. procursus (Péringuey, 1899), O. protectus (Koch, 1952), O. punctatissimus (Koch, 1952), O. puncticollis (Koch, 1952), O. punctipennis planisculptus (Koch, 1952), O. punctipennis punctipennis (Harold, 1878), O. punctipleura (Koch, 1952), O. rhodesianus (Koch, 1952), O. roriferus (Koch, 1952), O. rufipes (Harold, 1878), O. saltuarius (Koch, 1952), O. scabricollis (Gerstaecker, 1854), O. scopulipes (Koch, 1952), O. scrobicollis griqua (Koch, 1952), O. scrobicollis simulans (Koch, 1952), O. semirasus (Koch, 1952), O. semiscabrum (Haag-Rutenberg, 1871), O. sericicollis (Koch, 1952), O. similis (Péringuey, 1899), O. sjoestedti (Gebien, 1910), O. spatulipes (Koch, 1952), O. specularis (Péringuey, 1899), O. spinigerus (Koch, 1952), O. stevensoni (Koch, 1952), O. tarsocnoides (Koch, 1952), O. temulentus (Koch, 1952), O. tenebrosus melanarius (Haag-Rutenberg, 1871), O. tenebrosus tenebrosus (Erichson, 1843), O. tibialis (Haag-Rutenberg, 1871), O. torosus (Koch, 1952), O. transversicollis (Haag-Rutenberg, 1879), O. tumidus (Haag-Rutenberg, 1871), O. umvumanus (Koch, 1952), O. vagus (Péringuey, 1899), O. vaticinus (Péringuey, 1899), O. verecundus (Péringuey, 1899), O. vetustus (Koch, 1952), O. vexator (Péringuey, 1899), O. virago (Koch, 1952), O. warmeloi (Koch, 1953), O. zanzibaricus (Haag-Rutenberg, 1875), Psammophanes antinorii (Gridelli, 1939), and P. mirei (Pierre, 1979). The type species [placed in square brackets] of the following genus-group taxa are designated for the first time, Ocnodes Fåhraeus, 1870 [Ocnodes scrobicollis Fåhraeus, 1870], Psammodophysis Péringuey, 1899 [Psammodophysis probes Péringuey, 1899], and Trachynotidus Péringuey, 1899 [Psammodes thoreyi Haag-Rutenberg, 1871]. A lectotype is designated for Histrionotus omercooperi Koch, 1955 in order to fix its taxonomic status. Ulamus Kamiński is introduced here as a replacement name for Echinotus Marwick, 1935 [Type species. Avicula echinata Smith, 1817] (Mollusca: Pteriidae) to avoid homonymy with Echinotus Solier, 1843 (Coleoptera: Tenebrionidae).
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- 2019
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8. Catalogue of Tenebrionidae (Coleoptera) of North America
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Yves Bousquet, Donald B. Thomas, Patrice Bouchard, Aaron D. Smith, Rolf L. Aalbu, M. Andrew Johnston, and Warren E. Steiner Jr.
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Zoology ,QL1-991 - Abstract
This catalogue includes all valid family-group (8 subfamilies, 52 tribes, 14 subtribes), genus-group (349 genera, 86 subgenera), and species-group names (2825 species, 215 subspecies) of darkling beetles (Coleoptera: Tenebrionidae) known to occur in North America1 and their available synonyms. Data on extant, subfossil and fossil taxa are given. For each name the author and year and page number of the description are provided, with additional information (e.g., type species for genus-group names, author of synonymies for invalid taxa) depending on the taxon rank. Several new nomenclatural acts are included. One new genus, Lepidocnemeplatia Bousquet and Bouchard, is described. Spelaebiosis Bousquet and Bouchard [for Ardoinia Özdikmen, 2004], Blapstinus marcuzzii Aalbu [for Blapstinus kulzeri Marcuzzi, 1977], and Hymenorus campbelli Bouchard [for Hymenorus oculatus Doyen and Poinar, 1994] are proposed as new replacement names. Supporting evidence is provided for the conservation of usage of Tarpela micans (Fabricius, 1798) nomen protectum over Tarpela vittata (Olivier, 1793) nomen oblitum. The generic names Psilomera Motschulsky, 1870 [= Stenomorpha Solier, 1836], Steneleodes Blaisdell, 1909 [= Xysta Eschscholtz, 1829], Ooconibius Casey, 1895 and Euconibius Casey, 1895 [= Conibius LeConte, 1851] are new synonyms (valid names in square brackets). The following 127 new synonymies of species-group names, listed in their original combination, are proposed (valid names, in their current combination, placed in square brackets): Bothrasida mucorea Wilke, 1922 [= Pelecyphorus guanajuatensis (Champion, 1884)]; Parasida zacualpanicola Wilke, 1922 [= Pelecyphorus asidoides Solier, 1836]; Stenosides kulzeri Pallister, 1954, Stenosides bisinuatus Pallister, 1954, and Parasida trisinuata Pallister, 1954 [= Pelecyphorus dispar (Champion, 1892)]; Asida favosa Champion, 1884 and Asida similata Champion, 1884 [= Pelecyphorus fallax (Champion, 1884)]; Ologlyptus bicarinatus Champion, 1884 [= Pelecyphorus indutus (Champion, 1884)]; Parasida laciniata Casey, 1912 and Parasida cristata Pallister, 1954 [= Pelecyphorus liratus (LeConte, 1854)]; Parasida esperanzae Wilke, 1922 and Parasida mixtecae Wilke, 1922 [= Pelecyphorus longipennis (Champion, 1884)]; Parasida tolucana Casey, 1912 [= Pelecyphorus scutellaris (Champion, 1884)]; Parasida purpusi Wilke, 1922 [= Pelecyphorus tristis (Champion, 1884)]; Astrotus nosodermoides Champion, 1892 [= Pelecyphorus erosus (Champion, 1892)]; Astrotus seticornis var. humeralis Champion, 1884 [= Pelecyphorus seticornis (Champion, 1884)]; Pactostoma breviuscula Casey, 1912, Pactostoma exoleta Casey, 1912, Pactostoma luteotecta Casey, 1912, Pactostoma monticola Casey, 1912, Pactostoma obtecta Casey, 1912, and Pactostoma sigillata Casey, 1912 [=Pelecyphorus anastomosis (Say, 1824)]; Ologlyptus canus Champion, 1884 and Ologlyptus sinuaticollis Champion, 1884 [= Pelecyphorus graciliformis (Solier, 1836)]; Gonasida elata reducta Casey, 1912, Gonasida elata prolixa Casey, 1912, and Gonasida aucta Casey, 1912 [= Philolithus elatus compar (Casey, 1912)]; Gonasida alaticollis Casey, 1912 [= Philolithus elatus difformis (LeConte, 1854)]; Gonasida gravida Casey, 1912 [= Philolithus elatus elatus (LeConte, 1853)]; Pelecyphorus aegrotus limbatus Casey, 1912 [= Philolithus aegrotus aegrotus (LeConte, 1861)]; Pelecyphorus corporalis Casey, 1912, Pelecyphorus reptans Casey, 1912, Pelecyphorus socer Casey, 1912, Pelecyphorus abscissus Casey, 1912, Pelecyphorus fumosus Casey, 1912, Pelecyphorus parvus Casey, 1912, Pelecyphorus morbillosus pacatus Casey, 1912, Pelecyphorus morbillosus sobrius Casey, 1912, Pelecyphorus piceus Casey, 1912, Pelecyphorus piceus crudelis Casey, 1912, Pelecyphorus snowi Casey, 1912, and Pelecyphorus subtenuis Casey, 1912 [= Philolithus morbillosus (LeConte, 1858)]; Bothrasida sanctae-agnae Wilke, 1922 [= Stenomorpha funesta (Champion, 1884)]; Asida flaccida Horn, 1896 [= Stenomorpha embaphionides (Horn, 1894)]; Asida angustula Casey, 1890, Stethasida stricta Casey, 1912, Stethasida muricatula languida Casey, 1912, Stethasida pertinax Casey, 1912, Stethasida socors Casey, 1912, Stethasida angustula inepta Casey, 1912, Stethasida tenax Casey, 1912, and Stethasida vegrandis Casey, 1912 [= Stenomorpha muricatula (LeConte, 1851)]; Stethasida obsoleta expansa Casey, 1912, Stethasida obsoleta opacella Casey, 1912, Stethasida brevipes Casey, 1912, Stethasida torpida Casey, 1912, Stethasida convergens Casey, 1912, Stethasida discreta Casey, 1912, Stethasida longula Casey, 1912, Stethasida adumbrata Casey, 1912, Stethasida occulta Casey, 1912, Stethasida tarsalis Casey, 1912, Stethasida unica Casey, 1912, and Pelecyphorus laevigatus Papp, 1961 [= Stenomorpha obsoleta (LeConte, 1851)]; Trichiasida eremica Wilke, 1922 [= Stenomorpha difficilis (Champion, 1884)]; Trichiasida lineatopilosa Casey, 1912 [= Stenomorpha hirsuta (LeConte, 1851)]; Trichiasida tenella Casey, 1912 [= Stenomorpha hispidula (LeConte, 1851)]; Trichiasida duplex Casey, 1912 [= Stenomorpha villosa (Champion, 1884)]; Alaudes squamosa Blaisdell, 1919, Alaudes testacea Blaisdell, 1919, and Alaudes fallax Fall, 1928 [= Alaudes singularis Horn, 1870]; Edrotes barrowsi Dajoz, 1999 [=Edrotes ventricosus LeConte, 1851]; Nyctoporis tetrica Casey, 1907 and Nyctoporis maura Casey, 1907 [= Nyctoporis aequicollis Eschscholtz, 1831]; Nyctoporis pullata Casey, 1907 [= Nyctoporis sponsa Casey, 1907]; Eleodes tibialis forma oblonga Blaisdell, 1909 [= Eleodes tibialis Blaisdell, 1909]; Eleodes (manni var.) variolosa Blaisdell, 1917 [= Eleodes constrictus LeConte, 1858]; Eleodes cordata forma sublaevis Blaisdell, 1909, Eleodes cordata forma intermedia Blaisdell, 1909, Eleodes cordata forma oblonga Blaisdell, 1909, Eleodes cordata forma elongata Blaisdell, 1909, and Eleodes (cordata var.) adulterina Blaisdell, 1917 [= Eleodes cordata Eschscholtz, 1829]; Eleodes hornii var. monticula Blaisdell, 1918 and Eleodes manni sierra Blaisdell, 1925 [= Eleodes fuchsii Blaisdell, 1909]; Eleodes parvicollis var. squalida Blaisdell, 1918 [= Eleodes parvicollis Eschscholtz, 1829]; Eleodes reflexicollis Mannerheim, 1843 and Eleodes parvicollis forma farallonica Blaisdell, 1909 [= Eleodes planata Eschscholtz, 1829]; Eleodes indentata Blaisdell, 1935 [= Eleodes rotundipennis LeConte, 1857]; Eleodes intricata Mannerheim, 1843 [= Eleodes scabrosa Eschscholtz, 1829]; Eleodes horni fenyesi Blaisdell, 1925 [= Eleodes tenebrosa Horn, 1870]; Eleodes cordata var. horrida Blaisdell, 1918 [= Eleodes tuberculata Eschscholtz, 1829]; Eleodes oblonga Blaisdell, 1933 [= Eleodes versatilis Blaisdell, 1921]; Eleodes dentipes marinae Blaisdell, 1921 [= Eleodes dentipes Eschscholtz, 1829]; Eleodes carbonaria forma glabra Blaisdell, 1909 [= Eleodes carbonaria carbonaria (Say, 1824)]; Eleodes granosa forma fortis Blaisdell, 1909 [= Eleodes granosa LeConte, 1866]; Eleodes pilosa forma ordinata Blaisdell, 1909 [= Eleodes pilosa Horn, 1870]; Trogloderus costatus pappi Kulzer, 1960 [= Trogloderus tuberculatus Blaisdell, 1909]; Trogloderus costatus mayhewi Papp, 1961 [= Trogloderus vandykei La Rivers, 1946]; Bolitophagus cristatus Gosse, 1840 [= Bolitotherus cornutus (Fabricius, 1801)]; Eleates explanatus Casey, 1890 [= Eleates depressus (Randall, 1838)]; Blapstinus sonorae Casey, 1890 [= Blapstinus brevicollis LeConte, 1851]; Blapstinus falli Blaisdell, 1929 [= Blapstinus castaneus Casey, 1890]; Blapstinus brunneus Casey, 1890 and Blapstinus coronadensis Blaisdell, 1892 [=Blapstinus histricus Casey, 1890]; Blapstinus hesperius Casey, 1890 [=Blapstinus intermixtus Casey, 1890]; Blapstinus cinerascens Fall, 1929 [= Blapstinus lecontei Mulsant and Rey, 1859]; Blapstinus niger Casey, 1890 and Blapstinus cribricollis Casey, 1890 [= Blapstinus pimalis Casey, 1885]; Blapstinus arenarius Casey, 1890 [= Blapstinus pratensis LeConte, 1859]; Blapstinus gregalis Casey, 1890 [= Blapstinus substriatus Champion, 1885]; Blapstinus hydropicus Casey, 1890 [= Blapstinus sulcatus LeConte, 1851]; Blapstinus hospes Casey, 1890 [= Blapstinus vestitus LeConte, 1859]; Notibius reflexus Horn, 1894 [= Conibius opacus (LeConte, 1866)]; Notibius affinis Champion, 1885 [=Conibius rugipes (Champion, 1885)]; Conibius parallelus LeConte, 1851 [= Conibius seriatus LeConte, 1851]; Nocibiotes rubripes Casey, 1895 [=Nocibiotes caudatus Casey, 1895]; Nocibiotes gracilis Casey, 1895 and Nocibiotes acutus Casey, 1895 [=Nocibiotes granulatus (LeConte, 1851)]; Conibius alternatus Casey, 1890 [= Tonibius sulcatus (LeConte, 1851)]; Pedinus suturalis Say, 1824 [= Alaetrinus minimus (Palisot de Beauvois, 1817)]; Menedrio longipennis Motschulsky, 1872 [= Tenebrio obscurus Fabricius, 1792]; Hymenophorus megops Hatch, 1965 and Telesicles magnus Hatch, 1965 [= Hymenorus sinuatus Fall, 1931]; Andrimus concolor Casey, 1891 and Andrimus convergens Casey, 1891 [= Andrimus murrayi (LeConte, 1866)]; Mycetochara marshalli Campbell, 1978 [= Mycetochara perplexata Marshall, 1970]; Phaleria globosa LeConte, 1857 [= Phaleria picta Mannerheim, 1843]. The following subspecies of Trogloderus costatus LeConte, 1879 are given species rank: Trogloderus nevadus La Rivers, 1943, Trogloderus tuberculatus Blaisdell, 1909, and Trogloderus vandykei La Rivers, 1946. The following taxa, previously thought to be junior synonyms, are considered valid: Amphidora Eschscholtz, 1829; Xysta Eschscholtz, 1829; Helops confluens (Casey, 1924). Two new combinations are proposed: Stenomorpha spinimana (Champion, 1892) and Stenomorpha tenebrosa (Champion, 1892) [from the genus Parasida Casey, 1912]. The type species [placed in square brackets] of the following 12 genus-group taxa are designated for the first time: Lagriola Kirsch, 1874 [Lagriola operosa Kirsch, 1874]; Locrodes Casey, 1907 [Emmenastus piceus Casey, 1890]; Falacer Laporte, 1840 [Acanthopus cupreus Laporte, 1840 (= Helops contractus Palisot de Beauvois, 1812)]; Blapylis Horn, 1870 [Eleodes cordata Eschscholtz, 1829]; Discogenia LeConte, 1866 [Eleodes scabricula LeConte, 1858]; Metablapylis Blaisdell, 1909 [Eleodes nigrina LeConte, 1858]; Steneleodes Blaisdell, 1909 [Eleodes longicollis LeConte, 1851]; Scaptes Champion, 1886 [Scaptes squamulatus Champion, 1886 (= Asida tropica Kirsch, 1866)]; Aspidius Mulsant and Rey, 1859 [Blaps punctata Fabricius, 1792]; Cryptozoon Schaufuss, 1882 [Cryptozoon civile Schaufuss, 1882]; Halophalerus Crotch, 1874 [Phaleria rotundata LeConte, 1851]; Dignamptus LeConte, 1878 [Dignamptus stenochinus LeConte, 1878]. Two species previously known from South America [Nilio lebasi J. Thomson and Platydema erotyloides Chevrolat] are reported for the first time from North America.
- Published
- 2018
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9. Reinstatement of Eschatoporiini Blaisdell, 1906, a unique tribe of blind cavernicolous Tenebrionidae from California, with a new species from Napa County (Coleoptera, Tenebrionidae, Lagriinae)
- Author
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Rolf L. Aalbu, Kojun Kanda, and Aaron D. Smith
- Subjects
Zoology ,QL1-991 - Abstract
The tribe Eschatoporini Blaisdell, 1906 is reinstated, based on molecular and morphological data, and the spelling corrected as Eschatoporiini. The tribe currently includes only the cave-dwelling genus Eschatoporis Blaisdell, 1906 from California, which is associated with underground aquifers. A second species of Eschatoporis is described from a cave in Napa County, California. The phylogenetic placement of Eschatoporiini within the Lagriinae is examined, and notes on the biology of Eschatoporis are provided.
- Published
- 2017
- Full Text
- View/download PDF
10. Computer and Internet Use by Great Plains Farmers
- Author
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Aaron D. Smith, W. Richard Goe, Martin Kemey, and Paul Catherine Morrison J.
- Subjects
agriculture ,competitiveness ,net benefits ,technology adoption ,Agriculture - Abstract
This study uses data from a 2001 survey of Great Plains farmers to explore the adoption, usage patterns, and perceived benefits of computers and the Internet. Adoption results suggest that exposure to the technology through college, outside employment, friends, and family is ultimately more influential than farmer age and farm size. Notably, about half of those who use the Internet for farm-related business report zero economic benefits from it. Whether a farmer perceives that the Internet generates economic benefits depends primarily on how long the farmer has used the Internet for farm business and for what purposes.
- Published
- 2004
- Full Text
- View/download PDF
11. The AIFS Institute: Building a better food system through AI.
- Author
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Ilias Tagkopoulos, J. Mason Earles, Danielle G. Lemay, Xin Liu 0002, Nitin Nitin, Aaron D. Smith, Tarek I. Zohdi, and Stephen F. Brown
- Published
- 2024
- Full Text
- View/download PDF
12. Special report: AI Institute for next generation food systems (AIFS).
- Author
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Ilias Tagkopoulos, Stephen F. Brown, Xin Liu 0002, Qing Zhao, Tarek I. Zohdi, J. Mason Earles, Nitin Nitin, Daniel E. Runcie, Danielle G. Lemay, Aaron D. Smith, Pamela C. Ronald, Hao Feng, and Gabriel David Youtsey
- Published
- 2022
- Full Text
- View/download PDF
13. Formalizing Invertebrate Morphological Data: A Descriptive Model for Cuticle-Based Skeleto-Muscular Systems, an Ontology for Insect Anatomy, and their Potential Applications in Biodiversity Research and Informatics
- Author
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Jennifer C Girón, Sergei Tarasov, Luis Antonio González Montaña, Nicolas Matentzoglu, Aaron D Smith, Markus Koch, Brendon E Boudinot, Patrice Bouchard, Roger Burks, Lars Vogt, Matthew Yoder, David Osumi-Sutherland, Frank Friedrich, Rolf Beutel, and István Mikó
- Subjects
Genetics ,Ecology, Evolution, Behavior and Systematics - Abstract
The spectacular radiation of insects has produced a stunning diversity of phenotypes. During the past 250 years, research on insect systematics has generated hundreds of terms for naming and comparing them. In its current form, this terminological diversity is presented in natural language and lacks formalization, which prohibits computer-assisted comparison using semantic web technologies. Here we propose a Model for Describing Cuticular Anatomical Structures (MoDCAS) which incorporates structural properties and positional relationships for standardized, consistent, and reproducible descriptions of arthropod phenotypes. We applied the MoDCAS framework in creating the ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM). The AISM is the first general insect ontology that aims to cover all taxa by providing generalized, fully logical, and queryable, definitions for each term. It was built using the Ontology Development Kit (ODK), which maximizes interoperability with Uberon (Uberon multi-species anatomy ontology) and other basic ontologies, enhancing the integration of insect anatomy into the broader biological sciences. A template system for adding new terms, extending, and linking the AISM to additional anatomical, phenotypic, genetic, and chemical ontologies is also introduced. The AISM is proposed as the backbone for taxon-specific insect ontologies and has potential applications spanning systematic biology and biodiversity informatics, allowing users to (1) use controlled vocabularies and create semi-automated computer-parsable insect morphological descriptions; (2) integrate insect morphology into broader fields of research, including ontology-informed phylogenetic methods, logical homology hypothesis testing, evo-devo studies, and genotype to phenotype mapping; and (3) automate the extraction of morphological data from the literature, enabling the generation of large-scale phenomic data, by facilitating the production and testing of informatic tools able to extract, link, annotate, and process morphological data. This descriptive model and its ontological applications will allow for clear and semantically interoperable integration of arthropod phenotypes in biodiversity studies.
- Published
- 2023
- Full Text
- View/download PDF
14. An outdoor high-accuracy local positioning system for an autonomous robotic golf greens mower.
- Author
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Aaron D. Smith, H. Jacky Chang, and Edward J. Blanchard
- Published
- 2012
- Full Text
- View/download PDF
15. Enzymatic bioconjugation to nanoparticles
- Author
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Scott A. Walper, Igor L. Medintz, and Aaron D. Smith
- Subjects
chemistry.chemical_classification ,Enzyme ,Bioconjugation ,chemistry ,Nanoparticle ,Combinatorial chemistry - Published
- 2023
- Full Text
- View/download PDF
16. Essentials of Applied Econometrics
- Author
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Aaron D. Smith, J. Edward Taylor
- Published
- 2016
17. First insights into the phylogeny of tok-tokkie beetles (Tenebrionidae: Molurina, Phanerotomeina) and examination of the status of the Psammodes vialis species-group
- Author
-
Olivia M Gearner, Luboš Purchart, Aaron D. Smith, Kali Swichtenberg, Marcin Jan Kamiński, and Kojun Kanda
- Subjects
0106 biological sciences ,0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Phylogenetics ,Species group ,Zoology ,Animal Science and Zoology ,Biology ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics - Abstract
The first molecular phylogeny of the tribe Sepidiini is inferred from analyses of DNA sequence data from the following five loci (CAD, wg, COI, COII, 28S rRNA). Bayesian and maximum likelihood analyses were performed on a dataset containing 41 taxa, of which a majority represent Molurina (27) and Phanerotomeina (6). The resulting topologies were used to discuss phylogenetic placement and diagnostic characters of all of the genera representing Molurina. Within the subtribe, the results revealed paraphyly of the genus Psammodes. The P. vialis species-group, currently classified within Psammodes, was recovered as sister to all other Molurina genera. Based on this topology and morphological investigations, a new genus named Toktokkus gen. nov. is established. Within Phanerotomeina, Ocnodes is paraphyletic with regard to Tarsocnodes. In order to restore the monophyly of Ocnodes, the subgenus Chiliarchum stat. nov. is elevated to generic level. Finally, as the homology of female terminalia structures has never been fully assessed for Sepidiini, a comparative study of ovipositor morphology was conducted. As a result, this paper presents the first fully annotated ovipositors for tok-tokkie beetles.
- Published
- 2020
- Full Text
- View/download PDF
18. Spatial population structure of a widespread aquatic insect in the Colorado River Basin: Evidence for aHydropsyche oslarispecies complex
- Author
-
Aaron D. Smith, Anya N. Metcalfe, Jeffrey D. Muehlbauer, Theodore A. Kennedy, and Jane C. Marks
- Subjects
geography ,Species complex ,geography.geographical_feature_category ,Ecology ,Functional connectivity ,Population structure ,Drainage basin ,Hydropsyche oslari ,Aquatic Science ,Biology ,biology.organism_classification ,Aquatic insect ,Biological dispersal ,Ecology, Evolution, Behavior and Systematics ,Hydropsychidae - Abstract
Structural connectivity and dispersal ability are important constraints on functional connectivity among populations. For aquatic organisms that disperse among stream corridors, the regiona...
- Published
- 2020
- Full Text
- View/download PDF
19. Testing the Taxonomy of Amphidorini Leconte (Coleoptera: Tenebrionidae): A Molecular Phylogeny Leveraging Museum Sequencing
- Author
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M. Andrew Johnston, Aaron D. Smith, Kojun Kanda, Marcin J. Kamiński, Priscila Naverette, Lucio A. Sanchez, Rolf L. Aalbu, Kelly B. Miller, Quentin D. Wheeler, and Nico M. Franz
- Subjects
Ecology, Evolution, Behavior and Systematics - Published
- 2022
- Full Text
- View/download PDF
20. Formalizing Insect Morphological Data: A Model-Based, Extensible Insect Anatomy Ontology and Its Potential Applications in Biodiversity Research and Informatics
- Author
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Jennifer C. Girón, Sergei Tarasov, Luis A. González Montaña, Nicolas Matentzoglu, Aaron D. Smith, Markus Koch, Brendon E. Boudinot, Patrice Bouchard, Roger Burks, Lars Vogt, Matt Yoder, David Osumi-Sutherland, Frank Friedrich, Rolf Beutel, and István Mikó
- Subjects
ComputingMethodologies_SIMULATIONANDMODELING ,anatomy_morphology ,ComputingMethodologies_ARTIFICIALINTELLIGENCE - Abstract
The spectacular radiation of insects has produced a stunning diversity of phenotypes. During the last 250 years, research on insect systematics has generated hundreds of terms for naming and comparing those phenotypes. In its current form, this terminological diversity is presented in natural language and lacks formalization, which prohibits computer-assisted comparison using semantic web technologies. Here we propose a Model for Describing Insect Anatomical Structures (MoDIAS) which incorporates structural properties and positional relationships for standardized, consistent, and reproducible descriptions of insect phenotypes. We applied the MoDIAS framework in creating the ontology for the Anatomy of the Insect Skeleto-Muscular system (AISM). The AISM is the first general insect ontology that aims to cover all taxa by providing generalized, fully logical, and queryable, definitions for each term. It was built using the Ontology Development Kit (ODK), which maximizes interoperability with Uberon (Uberon multi-species anatomy ontology) and other basic ontologies, enhancing the integration of insect anatomy into the broader biological sciences. A template system for adding new terms, extending and linking the AISM to additional anatomical, phenotypic, genetic, and chemical ontologies is also introduced. The AISM is proposed as the backbone for taxon-specific insect ontologies and has potential applications spanning systematic biology and biodiversity informatics, allowing users to (1) use controlled vocabularies and create semi-automated computer-parsable insect morphological descriptions; (2) integrate insect morphology into broader fields of research, including ontology-informed phylogenetic methods, logical homology hypothesis testing, evo-devo studies, and genotype to phenotype mapping; and (3) automate the extraction of morphological data from the literature, enabling the generation of large-scale phenomic data, by facilitating the production and testing of informatic tools able to extract, link, annotate, and process morphological data. This system will allow for clear and semantically interoperable integration of insect phenotypes in biodiversity studies.
- Published
- 2022
21. Nutrient Pollution and U.S. Agriculture: Causal Effects, Integrated Assessment, and Implications of Climate Change
- Author
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Konstantinos Metaxoglou and Aaron D. Smith
- Published
- 2022
- Full Text
- View/download PDF
22. Preface to the Proceedings of the International Tenebrionoidea Virtual Symposium VI
- Author
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Marcin J. Kamiński, Aaron D. Smith, Patrice Bouchard, Kojun Kanda, M. Andrew Johnston, Paloma Mas-Peinado, and Nicole L. Gunter
- Subjects
Beetles ,International Tenebrionoidea Symposium ,Darkling ,Identification workshop ,Entomology ,Ecology, Evolution, Behavior and Systematics - Abstract
The article provides information on the organizational aspects of the International Tenebrionoidea Virtual Symposium VI and the preceding North American Tenebrionidae identification and classification virtual workshop. Both events took place in May of 2021. Useful references to permanent online resources (schedules, talks) from both these meetings are presented.
- Published
- 2022
23. A lytic polysaccharide monooxygenase-like protein functions in fungal copper import and meningitis
- Author
-
Katja Salomon Johansen, Leila Lo Leggio, Chen Ding, Steven E. Conklin, Katherine J. Franz, Dennis J. Thiele, Aaron D. Smith, Nick V. Grishin, Sarela García-Santamarina, Pamela J. Riggs-Gelasco, Corinna Probst, Søren Brander, Lisa N. Kinch, and Richard A. Festa
- Subjects
Fungal meningitis ,Mice, Inbred A ,Mutant ,Virulence ,Article ,Mixed Function Oxygenases ,Microbiology ,Fungal Proteins ,Mice ,03 medical and health sciences ,Polysaccharides ,Extracellular ,medicine ,Animals ,Meningitis ,Molecular Biology ,030304 developmental biology ,Cryptococcus neoformans ,0303 health sciences ,Fungal protein ,biology ,Chemistry ,030302 biochemistry & molecular biology ,Cryptococcosis ,Cell Biology ,biology.organism_classification ,medicine.disease ,Disease Models, Animal ,Lytic cycle ,Female ,Copper - Abstract
Infection by the fungal pathogen Cryptococcus neoformans causes lethal meningitis, primarily in immune-compromised individuals. Colonization of the brain by C. neoformans is dependent on copper (Cu) acquisition from the host, which drives critical virulence mechanisms. While C. neoformans Cu+ import and virulence are dependent on the Ctr1 and Ctr4 proteins, little is known concerning extracellular Cu ligands that participate in this process. We identified a C. neoformans gene, BIM1, that is strongly induced during Cu limitation and which encodes a protein related to lytic polysaccharide monooxygenases (LPMOs). Surprisingly, bim1 mutants are Cu deficient, and Bim1 function in Cu accumulation depends on Cu2+ coordination and cell-surface association via a glycophosphatidyl inositol anchor. Bim1 participates in Cu uptake in concert with Ctr1 and expression of this pathway drives brain colonization in mouse infection models. These studies demonstrate a role for LPMO-like proteins as a critical factor for Cu acquisition in fungal meningitis. In the fungal pathogen Cryptococcus neoformans, Bim1 is a copper-binding lytic polysaccharide monooxygenase-like protein that participates in copper uptake in concert with the Ctr1 importer to drive virulence mechanisms during fungal meningitis.
- Published
- 2020
- Full Text
- View/download PDF
24. Molecular insights into the phylogeny of Blapstinina (Coleoptera: Tenebrionidae: Opatrini)
- Author
-
Dariusz Iwan, Marcin Jan Kamiński, Ryan Lumen, Aaron D. Smith, and Kojun Kanda
- Subjects
biology ,Phylogenetics ,Evolutionary biology ,Insect Science ,Opatrini ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2019
- Full Text
- View/download PDF
25. A New Genus of the Tribe Asidini (Coleoptera: Tenebrionidae) from South Africa, with Description of Two New Species
- Author
-
Marcin Jan Kamiński, Kojun Kanda, and Aaron D. Smith
- Subjects
Type species ,Genus ,Zoology ,Key (lock) ,Pimeliinae ,Biology ,Tribe (biology) ,Previously treated ,Incertae sedis ,Ecology, Evolution, Behavior and Systematics - Abstract
A new genus (Saeculumgen. nov.) of South African endemic Asidini is described to accommodate two newly described species (Saeculum zoologicumsp. nov. – type species, and Saeculum merklisp. nov.) and Saeculum tuberosum (Wilke, 1925) comb. nov. (previously treated as incertae sedis within Asidini). A key to the species is provided.
- Published
- 2021
- Full Text
- View/download PDF
26. Discovery of New Genera Challenges the Subtribal Classification of Tok-Tok Beetles (Coleoptera: Tenebrionidae: Sepidiini)
- Author
-
Olivia M Gearner, Aaron D. Smith, Kojun Kanda, Kali Swichtenberg, and Marcin Jan Kamiński
- Subjects
0106 biological sciences ,0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,Insect Science ,Zoology ,Animal Science and Zoology ,Biology ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics ,Developmental Biology - Abstract
Sepidiini is a speciose tribe of desert-inhabiting darkling beetles, which contains a number of poorly defined taxonomic groups and is in need of revision at all taxonomic levels. In this study, two previously unrecognized lineages were discovered, based on morphological traits, among the extremely speciose genera Psammodes Kirby, 1819 (164 species and subspecies) and Ocnodes Fåhraeus, 1870 (144 species and subspecies), namely the Psammodes spinosus species-group and Ocnodes humeralis species-group. In order to test their phylogenetic placement, a phylogeny of the tribe was reconstructed based on analyses of DNA sequences from six nonoverlapping genetic loci (CAD, wg, COI JP, COI BC, COII, and 28S) using Bayesian and maximum likelihood inference methods. The aforementioned, morphologically defined, species-groups were recovered as distinct and well-supported lineages within Molurina + Phanerotomeina and are interpreted as independent genera, respectively, Tibiocnodes Gearner & Kamiński gen. nov. and Tuberocnodes Gearner & Kamiński gen. nov. A new species, Tuberocnodes synhimboides Gearner & Kamiński sp. nov., is also described. Furthermore, as the recovered phylogenetic placement of Tibiocnodes and Tuberocnodes undermines the monophyly of Molurina and Phanerotomeina, an analysis of the available diagnostic characters for those subtribes is also performed. As a consequence, Phanerotomeina is considered as a synonym of the newly redefined Molurina sens. nov. Finally, spectrograms of vibrations produced by substrate tapping of two Molurina species, Toktokkus vialis (Burchell, 1822) and T. synhimboides, are presented.
- Published
- 2021
- Full Text
- View/download PDF
27. The Future for a Prominent Taxonomy
- Author
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Aaron D. Smith, Floyd W. Shockley, Jennifer M. Zaspel, Rebecca B. Simmons, Jessica L. Ware, and Chris A. Hamilton
- Subjects
History ,Insect Science ,Taxonomy (general) ,Animal Science and Zoology ,Biodiversity ,Data science ,Ecology, Evolution, Behavior and Systematics ,Taxonomy ,Developmental Biology - Abstract
Hamilton, Chris A., Shockley, Floyd W., Simmons, Rebecca, Smith, Aaron, Ware, Jessica, Zaspel, Jennifer M. (2021): The Future for a Prominent Taxonomy. Insect Systematics and Diversity (AIFB) 5 (1), No. 2: 1-2, DOI: 10.1093/isd/ixaa020, URL: http://dx.doi.org/10.1093/isd/ixaa020
- Published
- 2021
- Full Text
- View/download PDF
28. On the Taxonomic Placement of Penichrus Champion, 1885 and a Synopsis of North American Opatrini (Coleoptera: Tenebrionidae: Blaptinae)
- Author
-
M. Andrew Johnston, Keita Matsumoto, Marcin Jan Kamiński, and Aaron D. Smith
- Subjects
0106 biological sciences ,biology ,Opatrini ,010607 zoology ,biology.organism_classification ,Tribe (biology) ,010603 evolutionary biology ,01 natural sciences ,Incertae sedis ,Type species ,Type (biology) ,Genus ,Evolutionary biology ,Key (lock) ,Tenebrioninae ,Ecology, Evolution, Behavior and Systematics - Abstract
The taxonomic position of Penichrus blapstinoidesChampion, 1885 (type species of PenichrusChampion, 1885) within Tenebrionidae is discussed based on the analysis of both type material and comprehensive internal and external morphology. The species was formerly classified within Opatrini (subfamily Blaptinae); however, this hypothesis is hereby rejected as this species does not share any of the diagnostic characteristics proposed for that tribe. A detailed analysis of other phylogenetically crucial features (including male and female terminalia, defensive glands, antennae, and abdominal ventrites) places Penichrus within Tenebrioninae. However, a more detailed assignment is not currently possible given the present circumscriptions of tenebrionine tribes. The genus is hereby placed as incertae sedis within Tenebrioninae. A morphological analysis and discussion of current tribal concepts is presented, which exposes the weakness of the currently accepted classification system, and highlights a need for extensive comparative morphological studies within Tenebrioninae and related subfamilies. A lectotype for Penichrus blapstinoides is designated. Distolinus impressicollisFairmaire, 1892 is reinstated as a junior synonym of Penichrus blapstinoides. A revised checklist and key to the genera of Opatrini known from mainland North America are provided.
- Published
- 2020
- Full Text
- View/download PDF
29. A new genus with six new species of Edrotini (Coleoptera Tenebrionidae: Pimeliinae) from the Baja California Peninsula, Mexico
- Author
-
Aaron D. Smith and Rolf L. Aalbu
- Subjects
0106 biological sciences ,geography ,geography.geographical_feature_category ,010607 zoology ,Tribe (biology) ,01 natural sciences ,Archaeology ,010602 entomology ,Genus ,Peninsula ,Insect Science ,Key (lock) ,Mainland ,Pimeliinae ,Endemism - Abstract
Vizcainyxgen. nov., and six new species (V. andrewsisp. nov., V. australissp. nov., V. brownisp. nov., V. clarkisp. nov., V. insularissp. nov., V. peninsularissp. nov.) in the tribe Edrotini are described from Baja California and Baja California Sur, Mexico. Three of the six species occur on islands: two are island endemics and the third is found both on islands and the adjacent mainland. A key to the species and distribution map are provided.
- Published
- 2020
- Full Text
- View/download PDF
30. A matrix-based revision of the genus Hypogena Dejean, 1834 (Coleoptera Tenebrionidae)
- Author
-
Luna Grey and Aaron D. Smith
- Subjects
Male ,0106 biological sciences ,Insecta ,Arthropoda ,010607 zoology ,Zoology ,Tribe (biology) ,010603 evolutionary biology ,01 natural sciences ,Darkling beetle ,Genus ,Phylogenetics ,Animals ,Animalia ,Dead tree ,Tenebrioninae ,Ecology, Evolution, Behavior and Systematics ,Taxonomy ,biology ,Tenebrionidae ,Biodiversity ,biology.organism_classification ,Coleoptera ,Type species ,Dominican amber ,Animal Science and Zoology ,Animal Distribution - Abstract
The darkling beetle genus Hypogena Dejean, 1834 (Tenebrionidae: Tenebrioninae) is revised. Hypogena is entirely composed of dorsoventrally flattened species that live subcortically in dead trees. This genus is generally identified by male specific characters, particularly the presence of cephalic horns. Hypogena is currently placed within the tribe Triboliini Gistel, 1848. However, several previously overlooked morphological characters call into question its placement within the tribe. A morphological matrix of 94 external adult characters was assembled to examine species relationships and boundaries. The resulting phylogeny is presented. Thirteen Hypogena species were previously recognized as valid, including Hypogena marginalis Doyen & Poinar from Dominican amber. Four previously unidentified species are described in this study: Hypogena akuma sp. nov. (Brazil), Hypogena cryptica sp. nov. (Mexico), Hypogena hirsuta sp. nov. (Ecuador), and Hypogena reburra sp. nov. (Colombia). Lectotypes are designated for Hypogena depressa (Champion, 1886), Hypogena dejeani (Champion, 1886), Hypogena canaliculata (Champion, 1886), and Hypogena vacca (Fabricius, 1801). A neotype is designated for Tenebrio biimpressus (Latreille, 1833) (type species of Hypogena, synonymized under Hypogena brasilica (Perty)) in order to maintain stability within the genus.
- Published
- 2020
31. Genome-wide analysis of the regulation of Cu metabolism inCryptococcus neoformans
- Author
-
Richard A. Festa, Dennis J. Thiele, James P. Noonan, Jun Yin, John R. Perfect, Sarela García-Santamarina, Chen-Hsin Yu, Hiten D. Madhani, Chen Ding, Aaron D. Smith, Christina M. Homer, and Corinna Probst
- Subjects
0301 basic medicine ,Cryptococcus neoformans ,biology ,030106 microbiology ,Virulence ,biology.organism_classification ,Microbiology ,Virulence factor ,03 medical and health sciences ,Regulon ,Transcriptional regulation ,Molecular Biology ,Pathogen ,Transcription factor ,Phagosome - Abstract
The ability of the human fungal pathogen Cryptococcus neoformans to adapt to variable copper (Cu) environments within the host is key for successful dissemination and colonization. During pulmonary infection, host alveolar macrophages compartmentalize Cu into the phagosome and C. neoformans Cu-detoxifying metallothioneins, MT1 and MT2, are required for survival of the pathogen. In contrast, during brain colonization the C. neoformans Cu+ importers Ctr1 and Ctr4 are required for virulence. Central for the regulation and expression of both the Cu detoxifying MT1/2 and the Cu acquisition Ctr1/4 proteins is the Cu-metalloregulatory transcription factor Cuf1, an established C. neoformans virulence factor. Due to the importance of the distinct C. neoformans Cu homeostasis mechanisms during host colonization and virulence, and to the central role of Cuf1 in regulating Cu homeostasis, we performed a combination of RNA-Seq and ChIP-Seq experiments to identify differentially transcribed genes between conditions of high and low Cu. We demonstrate that the transcriptional regulation exerted by Cuf1 is intrinsically complex and that Cuf1 also functions as a transcriptional repressor. The Cu- and Cuf1-dependent regulon in C. neoformans reveals new adaptive mechanisms for Cu homeostasis in this pathogenic fungus and identifies potential new pathogen-specific targets for therapeutic intervention in fungal infections.
- Published
- 2018
- Full Text
- View/download PDF
32. Copper Acquisition and Utilization in Fungi
- Author
-
Brandon L. Logeman, Aaron D. Smith, and Dennis J. Thiele
- Subjects
0301 basic medicine ,Ecology ,030106 microbiology ,Fungi ,Virulence ,chemistry.chemical_element ,Biology ,Microbiology ,Copper ,Article ,Trace Elements ,Cell biology ,Copper homeostasis ,03 medical and health sciences ,chemistry ,Homeostasis - Abstract
Fungal cells colonize and proliferate in distinct niches, from soil and plants to diverse tissues in human hosts. Consequently, fungi are challenged with the goal of obtaining nutrients while simultaneously elaborating robust regulatory mechanisms to cope with a range of availability of nutrients, from scarcity to excess. Copper is essential for life but also potentially toxic. In this review we describe the sophisticated homeostatic mechanisms by which fungi acquire, utilize, and control this biochemically versatile trace element. Fungal pathogens, which can occupy distinct host tissues that have their own intrinsic requirements for copper homeostasis, have evolved mechanisms to acquire copper to successfully colonize the host, disseminate to other tissues, and combat host copper bombardment mechanisms that would otherwise mitigate virulence.
- Published
- 2017
- Full Text
- View/download PDF
33. Pythiopina, an enigmatic subtribe of darkling beetles (Coleoptera: Tenebrionidae: Pedinini): taxonomic revision, microtomography, ecological niche models and phylogenetic position
- Author
-
Marcin Raś, Aaron D. Smith, Marcin Jan Kamiński, and Kojun Kanda
- Subjects
0106 biological sciences ,Ecological niche ,Phylogenetic tree ,010607 zoology ,Holotype ,Identification key ,Biology ,010603 evolutionary biology ,01 natural sciences ,Sister group ,Evolutionary biology ,Insect Science ,Molecular phylogenetics ,Taxonomy (biology) ,Endemism ,Ecology, Evolution, Behavior and Systematics - Abstract
Morphological, anatomical, and distributional data concerning the South African endemic beetle subtribe Pythiopina (Tenebrionidae: Pedinini) are revised. Five species, representing two genera, are recognized. Included in this total is one new species (Meglyphus mariae Kaminski sp.n.). The following species are placed in synonymy: Meglyphus ciliatipes [=Meglyphus calitzensis syn.n.]; Meglyphus laenoides [=Meglyphus andreaei syn.n.; =Meglyphus namaqua syn.n.]. Microtomographic models for all valid Pythiopina species, including the holotype of the newly described species, are presented and analysed. Endoskeleton morphology (specifically characters of the tentorium and metendosternite) proved to be informative at the specific and generic levels. An identification key is provided to all known species of the subtribe. Environmental niche models are presented for the majority of species. A molecular phylogeny of Pedinini based on six genetic loci (28S: D1–D3 region; 28S: D4–D5 region, COII, ArgK, CAD2, wg) was also produced to explore the phylogenetic position of Pythiopina. This analysis is the first to include representatives of all seven subtribes of Pedinini, and supports a sister relationship between Pythiopina and the Palaearctic subtribe Dendarina. Results also suggest the existence of a second pair of sister taxa within Pedinini (in addition to Melambiina) with an amphitropical African distribution. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:285AD87A-46B1-4FE9-BC57-949EA1F70D49.
- Published
- 2017
- Full Text
- View/download PDF
34. Ground-dwelling arthropods of pinyon-juniper woodlands: Arthropod community patterns are driven by climate and overall plant productivity, not host tree species
- Author
-
Richard W. Hofstetter, Derek A. Uhey, Hannah Lee Riskas, and Aaron D. Smith
- Subjects
0106 biological sciences ,Atmospheric Science ,Vapor Pressure ,010504 meteorology & atmospheric sciences ,Rain ,Climate ,Woodland ,Forests ,01 natural sciences ,Trees ,Beetles ,Abundance (ecology) ,Multidisciplinary ,Ecology ,Physics ,Eukaryota ,Classical Mechanics ,Vegetation ,Plants ,Terrestrial Environments ,Insects ,Habitat ,Productivity (ecology) ,Physical Sciences ,Medicine ,Seasons ,Juniper ,Research Article ,Arthropoda ,Plant Exudates ,Science ,Biology ,010603 evolutionary biology ,Ecosystems ,Normalized Difference Vegetation Index ,Meteorology ,Pressure ,Animals ,Arthropods ,0105 earth and related environmental sciences ,Ants ,Ecology and Environmental Sciences ,Organisms ,Biology and Life Sciences ,Pinus ,biology.organism_classification ,Invertebrates ,Hymenoptera ,Juniperus ,Earth Sciences ,Species richness ,Zoology ,Entomology - Abstract
Pinyon-juniper (PJ) woodlands have drastically changed over the last century with juniper encroaching into adjacent habitats and pinyon experiencing large-scale mortality events from drought. Changes in climate and forest composition may pose challenges for animal communities found in PJ woodlands, especially if animals specialize on tree species sensitive to drought. Here we test habitat specialization of ground-dwelling arthropod (GDA) communities underneath pinyon and juniper trees. We also investigate the role of climate and productivity gradients in structuring GDAs within PJ woodlands using two elevational gradients. We sampled 12,365 individuals comprising 115 taxa over two years. We found no evidence that GDAs differ under pinyon or juniper trees, save for a single species of beetle which preferred junipers. Climate and productivity, however, were strongly associated with GDA communities and appeared to drive differences between sites. Precipitation was strongly associated with arthropod richness, while differences in GDA composition were associated with environmental variables (precipitation, temperature, vapor pressure, and normalized difference vegetation index). These relationships varied among different arthropod taxa (e.g. ants and beetles) and community metrics (e.g. richness, abundance, and composition), with individual taxa also responding differently. Overall, our results suggest that GDAs are not dependent on tree type, but are strongly linked to primary productivity and climate, especially precipitation in PJ woodlands. This implies GDAs in PJ woodlands are more susceptible to changes in climate, especially at lower elevations where it is hot and dry, than changes in dominant vegetation. We discuss management implications and compare our findings to GDA relationships with vegetation in other systems.
- Published
- 2020
35. Taxonomic revision of the genus Machleida Fåhraeus, 1870 (Tenebrionidae, Pimeliinae, Asidini)
- Author
-
Kojun Kanda, Marcin Jan Kamiński, and Aaron D. Smith
- Subjects
0106 biological sciences ,Insecta ,Synonym ,Identification key ,Carbotriplurida ,01 natural sciences ,synonyms ,Genus ,lcsh:Zoology ,Bilateria ,lcsh:QL1-991 ,Tenebrionoidea ,Pterygota ,Wuhua ,Cenozoic ,Tenebrionidae ,Cephalornis ,Incertae sedis ,Circumscriptional names ,female terminalia ,Coleoptera ,Boltonocostidae ,Ovipositor ,Afrasida ,Devia ,Research Article ,Coelenterata ,Arthropoda ,Heliotaurus ,darkling beetles ,010607 zoology ,Nephrozoa ,Zoology ,Protostomia ,Biology ,010603 evolutionary biology ,Circumscriptional names of the taxon under ,Systematics ,Animalia ,Pimeliinae ,Ecology, Evolution, Behavior and Systematics ,new species ,South Afric ,Pharotarsus ,Terminalia ,Baromiamima ,biology.organism_classification ,Scotinesthes ,Notchia ,Africa ,Ecdysozoa ,Animal Science and Zoology - Abstract
The taxonomic concept of the genusMachleidaFåhraeus, 1870 is tested and revised based on newly identified material. The following new species are described:Machleida banachi,M. flagstaffensis,M. tarskii, andM. zofiaeKamiński.Machleida capillosaWilke, 1925 is considered as a junior subjective synonym ofAsida deviaPéringuey, 1899.Asida lectaPéringuey, 1899 (=Pseudomachla recurvaWilke, 1925) (transferred toAfrasida),Machleida nossibianaFairmaire, 1897 (transferred toScotinesthes), andMachleida tuberosaWilke, 1925 (interpreted asincertae sedisin Asidini) are excluded fromMachleida. An identification key for the species of the newly revisedMachleidais provided. The present paper brings the total number of species within the genus to six (M. banachisp. nov.;M. devia(Péringuey, 1899);M. flagstaffensissp. nov.;M. nodulosaFåhraeus, 1870;M. tarskiisp. nov.;M. zofiaeKamińskisp. nov.). The morphology of female terminalia (ovipositor and genital tubes) is described for the genus for the first time.
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- 2019
36. A catalogue of the tribe Sepidiini Eschscholtz, 1829 (Tenebrionidae, Pimeliinae) of the world
- Author
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Marcin Jan Kamiński, Aaron D. Smith, Rolf L. Aalbu, Kojun Kanda, Ryan Lumen, Patrice Bouchard, Jonah M. Ulmer, Noël Mal, and Christopher C. Wirth
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Insecta ,Arthropoda ,Heliotaurus ,Nomen novum ,Nephrozoa ,Protostomia ,new combinations ,Carbotriplurida ,Tribe (biology) ,Circumscriptional names of the taxon under ,Page number ,Catalogue ,nomen novum ,Botany ,lcsh:Zoology ,distribution ,Bilateria ,Sepidiini ,Animalia ,Pimeliinae ,lcsh:QL1-991 ,Nomenclature ,Tenebrionoidea ,Ecology, Evolution, Behavior and Systematics ,Pterygota ,Pharotarsus ,Wuhua ,biology ,type species ,Tenebrionidae ,Cephalornis ,Baromiamima ,biology.organism_classification ,Circumscriptional names ,Coleoptera ,new synonyms ,Boltonocostidae ,Type species ,Notchia ,Africa ,Molurini ,Ecdysozoa ,nomenclature ,Animal Science and Zoology ,Parmularia ,Subgenus ,Coelenterata - Abstract
This catalogue includes all valid family-group (six subtribes), genus-group (55 genera, 33 subgenera), and species-group names (1009 species and subspecies) of Sepidiini darkling beetles (Coleoptera: Tenebrionidae: Pimeliinae), and their available synonyms. For each name, the author, year, and page number of the description are provided, with additional information (e.g., type species for genus-group names, author of synonymies for invalid taxa, notes) depending on the taxon rank. Verified distributional records (loci typici and data acquired from revisionary publications) for all the species are gathered. Distribution of the subtribes is illustrated and discussed.Several new nomenclatural acts are included. The generic namesPhanerotomeaKoch, 1958 [=OcnodesFåhraeus, 1870] andParmulariaKoch, 1955 [=PsammodesKirby, 1819] are new synonyms (valid names in square brackets).The following new combinations are proposed:Ocnodesacuductusacuductus(Ancey, 1883),O. acuductusufipanus(Koch, 1952),O. adamantinus(Koch, 1952),O. argenteofasciatus(Koch, 1953),O. arnoldiarnoldi(Koch, 1952),O. arnoldisabianus(Koch, 1952),O.barbosai(Koch, 1952),O.basilewskyi(Koch, 1952),O.bellmarleyi(Koch, 1952),O. benguelensis(Koch, 1952),O. bertolonii(Guérin-Méneville, 1844),O. blandus(Koch, 1952),O. brevicornis(Haag-Rutenberg, 1875),O. brunnescensbrunnescens(Haag-Rutenberg, 1871),O. brunnescensmolestus(Haag-Rutenberg, 1875),O. buccinator(Koch, 1952),O. bushmanicus(Koch, 1952),O. carbonarius(Gerstaecker, 1854),O. cardiopterus(Fairmaire, 1888),O. cataractus(Koch, 1952),O. cinerarius(Koch, 1952),O. complanatus(Koch, 1952),O. confertus(Koch, 1952),O. congruens(Péringuey, 1899),O. cordiventris(Haag-Rutenberg, 1871),O. crocodilinus(Koch, 1952),O. dimorphus(Koch, 1952),O. distinctus(Haag-Rutenberg, 1871),O. dolosus(Péringuey, 1899),O. dorsocostatus(Gebien, 1910),O. dubiosus(Péringuey, 1899),O. ejectus(Koch, 1952),O. epronoticus(Koch, 1952),O. erichsoni(Haag-Rutenberg, 1871),O. ferreiraeferreirae(Koch, 1952),O. ferreiraezulu(Koch, 1952),O. fettingi(Haag-Rutenberg, 1875),O. fistucans(Koch, 1952),O. fraternus(Haag-Rutenberg, 1875),O. freyi(Koch, 1952),O. freudei(Koch, 1952),O. fulgidus(Koch, 1952),O. funestus(Haag-Rutenberg, 1871),O. gemmeulus(Koch, 1952),O. gibberosulus(Péringuey, 1908),O. gibbus(Haag-Rutenberg, 1879),O. globosus(Haag-Rutenberg, 1871),O. granisterna(Koch, 1952),O. granulosicollis(Haag-Rutenberg, 1871),O.gridellii(Koch, 1960),O. gueriniguerini(Haag-Rutenberg, 1871),O. guerinilawrencii(Koch, 1954),O. guerinimancus(Koch 1954),O. haemorrhoidalishaemorrhoidalis(Koch, 1952),O. haemorrhoidalissalubris(Koch, 1952),O. heydeni(Haag-Rutenberg, 1871),O. humeralis(Haag-Rutenberg, 1871),O. humerangula(Koch, 1952),O. imbricatus(Koch, 1952),O.imitatorimitator(Péringuey, 1899),O. imitatorinvadens(Koch, 1952),O. inflatus(Koch, 1952),O. janssensi(Koch, 1952),O. javeti(Haag-Rutenberg, 1871),O. junodi(Péringuey, 1899),O. kulzeri(Koch, 1952),O. lacustris(Koch, 1952),O. laevigatus(Olivier, 1795),O. lanceolatus(Koch, 1953),O. licitus(Peringey, 1899),O. luctuosus(Haag-Rutenberg, 1871),O. luxurosus(Koch, 1952),O. maputoensis(Koch, 1952),O. marginicollis(Koch, 1952),O. martinsi(Koch, 1952),O. melleus(Koch, 1952),O. mendicusestermanni(Koch, 1952),O. mendicusmendicus(Péringuey, 1899),O. miles(Péringuey, 1908),O. mimeticus(Koch, 1952),O. misolampoides(Fairmaire, 1888),O. mixtus(Haag-Rutenberg, 1871),O. monacha(Koch, 1952),O. montanus(Koch, 1952),O. mozambicus(Koch, 1952),O. muliebriscurtus(Koch, 1952),O. muliebrismuliebris(Koch, 1952),O. muliebrissilvestris(Koch, 1952),O. nervosus(Haag-Rutenberg, 1871),O.notatum(Thunberg, 1787),O. notaticollis(Koch, 1952),O. odorans(Koch, 1952),O. opacus(Solier, 1843),O. osbecki(Billberg, 1815),O. overlaeti(Koch, 1952),O. ovulus(Haag-Rutenberg, 1871),O. pachysomaornata(Koch, 1952),O. pachysomapachysoma(Péringuey, 1892),O. papillosus(Koch, 1952),O. pedator(Fairmaire, 1888),O. perlucidus(Koch, 1952),O. planus(Koch, 1952),O. pretorianus(Koch, 1952),O. procursus(Péringuey, 1899),O. protectus(Koch, 1952),O. punctatissimus(Koch, 1952),O. puncticollis(Koch, 1952),O. punctipennisplanisculptus(Koch, 1952),O. punctipennispunctipennis(Harold, 1878),O. punctipleura(Koch, 1952),O. rhodesianus(Koch, 1952),O. roriferus(Koch, 1952),O. rufipes(Harold, 1878),O. saltuarius(Koch, 1952),O.scabricollis(Gerstaecker, 1854),O. scopulipes(Koch, 1952),O. scrobicollisgriqua(Koch, 1952),O. scrobicollissimulans(Koch, 1952),O. semirasus(Koch, 1952),O. semiscabrum(Haag-Rutenberg, 1871),O. sericicollis(Koch, 1952),O.similis(Péringuey, 1899),O. sjoestedti(Gebien, 1910),O. spatulipes(Koch, 1952),O. specularis(Péringuey, 1899),O. spinigerus(Koch, 1952),O. stevensoni(Koch, 1952),O. tarsocnoides(Koch, 1952),O. temulentus(Koch, 1952),O. tenebrosusmelanarius(Haag-Rutenberg, 1871),O. tenebrosustenebrosus(Erichson, 1843),O. tibialis(Haag-Rutenberg, 1871),O. torosus(Koch, 1952),O. transversicollis(Haag-Rutenberg, 1879),O. tumidus(Haag-Rutenberg, 1871),O. umvumanus(Koch, 1952),O. vagus(Péringuey, 1899),O. vaticinus(Péringuey, 1899),O. verecundus(Péringuey, 1899),O. vetustus(Koch, 1952),O. vexator(Péringuey, 1899),O. virago(Koch, 1952),O. warmeloi(Koch, 1953),O. zanzibaricus(Haag-Rutenberg, 1875),Psammophanesantinorii(Gridelli, 1939), andP.mirei(Pierre, 1979).The type species [placed in square brackets] of the following genus-group taxa are designated for the first time,OcnodesFåhraeus, 1870 [OcnodesscrobicollisFåhraeus, 1870],PsammodophysisPéringuey, 1899 [PsammodophysisprobesPéringuey, 1899], andTrachynotidusPéringuey, 1899 [PsammodesthoreyiHaag-Rutenberg, 1871].A lectotype is designated forHistrionotusomercooperiKoch, 1955 in order to fix its taxonomic status.UlamusKamiński is introduced here as a replacement name forEchinotusMarwick, 1935 [Type species.AviculaechinataSmith, 1817] (Mollusca: Pteriidae) to avoid homonymy withEchinotusSolier, 1843 (Coleoptera: Tenebrionidae).
- Published
- 2019
37. Editorial Fifth International Tenebrionoidea Symposium
- Author
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Patrice Bouchard, Luboš Purchart, Marcin Jan Kamiński, and Aaron D. Smith
- Subjects
Tenebrionoidea ,biology ,Evolutionary biology ,biology.organism_classification ,Ecology, Evolution, Behavior and Systematics - Published
- 2019
- Full Text
- View/download PDF
38. A New Genus and Species of Stridulating Edrotini (Coleoptera: Tenebrionidae: Pimeliinae) from West Texas, with Notes on Stridulation Within the Tribe
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Christopher C. Wirth and Aaron D. Smith
- Subjects
0106 biological sciences ,Ecology ,010607 zoology ,Zoology ,Stridulation ,Biology ,Sound production ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Darkling beetle ,Genus ,Taxonomy (biology) ,Pimeliinae ,Ecology, Evolution, Behavior and Systematics - Abstract
Eremocantor marioni, gen. nov. et sp. nov. is described for an unusual species of stridulating darkling beetle discovered in West Texas, USA. Stridulation in other members of the tribe Edrotini (Tenebrionidae: Pimeliinae) is discussed, including Edrotes LeConte and the previously unrecognized sound producing genera Pimeliopsis Champion, Pescennius Champion, Trichiotes Casey, and Oxygonodera Casey. A key to the known stridulating edrotine genera is also provided.
- Published
- 2016
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39. CaribanosisGen. Nov. from Hispaniola (Pimeliinae: Stenosiini) with Taxonomic Notes on the Tribes Belopini and Stenosini (Coleoptera: Tenebrionidae)
- Author
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Carlos Varela, Aaron D. Smith, Maxim Nabozhenko, Alexander G. Kirejtshuk, Ottó Merkl, and Rolf L. Aalbu
- Subjects
0106 biological sciences ,010602 entomology ,Keel ,Genus ,South american ,010607 zoology ,Zoology ,Pimeliinae ,Biology ,Tribe (biology) ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics - Abstract
Rhypasma Pascoe, 1862 is transferred from the tribe Stenosini (Pimeliinae) to Belopini (Lagriinae). Caribanosis gen. nov. is described and placed in Stenosini (Tenebrionidae: Pimeliinae) to hold Rhypasma quisqueyanus Garrido et Varela, 2011. The following new combination is established: Caribanosis quisqueyanus (Garrido et Varela, 2011), comb. nov. Caribanosis is similar to the South American genus Grammicus Waterhouse, 1845 but differs in having a single central pronotal keel, not two lateral keels as in Grammicus. Both are members of the subtribe Stenosina.
- Published
- 2016
- Full Text
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40. Available data support protection of the Southwestern Willow Flycatcher under the Endangered Species Act
- Author
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Aaron D. Smith, Sean Mahoney, Tad C. Theimer, and Kirsten E. Ironside
- Subjects
0106 biological sciences ,Willow ,biology ,Ecology ,Endangered species ,Setophaga petechia ,Subspecies ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,010605 ornithology ,Environmental niche modelling ,Warbler ,Plumage ,comic_books ,Animal Science and Zoology ,Flycatcher ,Ecology, Evolution, Behavior and Systematics ,comic_books.character - Abstract
Zink (2015) argued there was no evidence for genetic, morphological, or ecological differentiation between the federally endangered Southwestern Willow Flycatcher (Empidonax traillii extimus) and other Willow Flycatcher subspecies. Using the same data, we show there is a step-cline in both the frequency of a mtDNA haplotype and in plumage variation roughly concordant with the currently recognized boundary between E. t. extimus and E. t adastus, the subspecies with which it shares the longest common boundary. The geographical pattern of plumage variation is also concordant with previous song analyses differentiating those 2 subspecies and identified birds in one low-latitude, high-elevation site in Arizona as the northern subspecies. We also demonstrate that the ecological niche modeling approach used by Zink yields the same result whether applied to the 2 flycatcher subspecies or to 2 unrelated species, E. t. extimus and Yellow Warbler (Setophaga petechia). As a result, any interpretation of thos...
- Published
- 2016
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41. Transcription factor–driven alternative localization of Cryptococcus neoformans superoxide dismutase
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Sarela García-Santamarina, David R. Loiselle, Dennis J. Thiele, Aaron D. Smith, Martina Ralle, and Timothy A.J. Haystead
- Subjects
Male ,0301 basic medicine ,Biochemistry ,Mice ,Superoxide Dismutase-1 ,5’-UTR, 5’-untranslated region ,Protein Isoforms ,mRNA-sequencing ,MIP, mitochondrial import peptide ,transcription factor ,Cu, copper ,chemistry.chemical_classification ,Regulation of gene expression ,IMS, intermembrane space ,biology ,ChIP-sequencing ,subcellular fractionation ,Cell biology ,5’-RACE, 5’-rapid amplification of cDNA ends ,BCS, bathocuproinedisulfonic acid ,CTR, copper transporter ,Female ,Subcellular Fractions ,Research Article ,CuRE, copper responsive element ,Gene isoform ,SOD1 ,SOD2 ,ICP-MS, inductively coupled plasma mass spectrometry ,Fungal Proteins ,Superoxide dismutase ,03 medical and health sciences ,ROS, reactive oxygen species ,SC, synthetic complete ,SOD, superoxide dismutase ,Animals ,Molecular Biology ,Transcription factor ,Cryptococcus neoformans ,posttranslational modification ,Reactive oxygen species ,030102 biochemistry & molecular biology ,Superoxide Dismutase ,Cell Biology ,MT, metallothionein ,biology.organism_classification ,infection ,CFU, colony forming unit ,AOX, alternative oxidase ,Disease Models, Animal ,030104 developmental biology ,chemistry ,copper ,biology.protein ,gene regulation ,NAT, N-acetyltransferase ,Transcription Factors ,HA, hemagglutinin - Abstract
Cryptococcus neoformans is an opportunistic fungal pathogen whose pathogenic lifestyle is linked to its ability to cope with fluctuating levels of copper (Cu), an essential metal involved in multiple virulence mechanisms, within distinct host niches. During lethal cryptococcal meningitis in the brain, C. neoformans senses a Cu-deficient environment and is highly dependent on its ability to scavenge trace levels of Cu from its host and adapt to Cu scarcity to successfully colonize this niche. In this study, we demonstrate for this critical adaptation, the Cu-sensing transcription factor Cuf1 differentially regulates the expression of the SOD1 and SOD2 superoxide dismutases in novel ways. Genetic and transcriptional analysis reveals Cuf1 specifies 5’-truncations of the SOD1 and SOD2 mRNAs through specific binding to Cu responsive elements within their respective promoter regions. This results in Cuf1-dependent repression of the highly abundant SOD1 and simultaneously induces expression of two isoforms of SOD2, the canonical mitochondrial targeted isoform and a novel alternative cytosolic isoform, from a single alternative transcript produced specifically under Cu limitation. The generation of cytosolic Sod2 during Cu limitation is required to maintain cellular antioxidant defense against superoxide stress both in vitro and in vivo. Further, decoupling Cuf1 regulation of Sod2 localization compromises the ability of C. neoformans to colonize organs in murine models of cryptococcosis. Our results provide a link between transcription factor–mediated alteration of protein localization and cell proliferation under stress, which could impact tissue colonization by a fungal pathogen.
- Published
- 2021
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42. First member of the New World genus Diceroderes from early Miocene Mexican amber (Coleoptera: Tenebrionidae: Tenebrioninae: Toxicini)
- Author
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Diying Huang, Aaron D. Smith, Chenyang Cai, and Erik Tihelka
- Subjects
010506 paleontology ,Fossil Record ,biology ,Male genitalia ,Clypeus ,Zoology ,Geology ,010502 geochemistry & geophysics ,biology.organism_classification ,01 natural sciences ,Mexican amber ,Extant taxon ,Genus ,Central american ,Tenebrioninae ,0105 earth and related environmental sciences ,Earth-Surface Processes - Abstract
A new fossil species belonging to the extant Central American genus Diceroderes Solier, 1841 (Tenebrionidae: Tenebrioninae: Toxicini) is described based on an exquisitely preserved male specimen from early Miocene Mexican (Chiapas) amber (~23–16 Ma). High-resolution X-ray microtomography was used to document fine anatomical detail of soft tissues, including well-preserved male genitalia. Diceroderes jiangkuni sp. nov. can be most readily differentiated from congenerics by the clypeus with a transverse row of tubercles, apices of pronotal horns strongly angled upwards in the male, elytra rounded in lateral view, and all male tibiae lacking apical spines. This represents the first fossil record of Toxicini from Mexican amber and indicates that the genus persisted in the region since the early Miocene.
- Published
- 2020
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43. Priority determines Tribolium competitive outcome in a food-limited environment
- Author
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Zane Holditch and Aaron D. Smith
- Subjects
0106 biological sciences ,Aging ,Flour ,Invasive Species ,Predation ,01 natural sciences ,Beetles ,Common species ,Medicine and Health Sciences ,media_common ,Tribolium ,Multidisciplinary ,Ecology ,biology ,Eukaryota ,Fecundity ,Trophic Interactions ,Insects ,Population decline ,Community Ecology ,Medicine ,Research Article ,Competitive Behavior ,Flour beetle ,Arthropoda ,Population Size ,Science ,media_common.quotation_subject ,Environment ,010603 evolutionary biology ,Competitive advantage ,Competition (biology) ,Species Colonization ,Population Metrics ,Species Specificity ,Animals ,Population Growth ,Nutrition ,Ecological niche ,Analysis of Variance ,Population Biology ,Ecology and Environmental Sciences ,Organisms ,Biology and Life Sciences ,biology.organism_classification ,Invertebrates ,Survival Analysis ,Diet ,010602 entomology ,Food ,Linear Models - Abstract
Flour beetles are a classic model system for studying competitive dynamics between species occupying the same ecological niche. Competitive performance is often interpreted in terms of biological species traits such as fecundity, resource use, and predation. However, many studies only measure competitive ability when species enter an environment simultaneously, and thus do not consider how the relative timing of species' arrival may determine competitive outcome (i.e., priority effects). Whether priority effects may influence competition in Tribolium remains to be tested. The present study examined the importance of priority effects in competitions between two common species of flour beetle (Coleoptera: Tenebrionidae): Tribolium castaneum and T. confusum. To investigate whether priority effects confer competitive advantages to Tribolium beetles, relative introduction times of T. castaneum and T. confusum to competitive arenas were manipulated, and adult populations were measured for seven months. Four important patterns were noted: (1) Tribolium species given two-weeks priority access to experimental arenas attained larger populations than their late-arriving competitor, (2) when founding adults were introduced simultaneously, T. castaneum was competitively dominant, (3) T. castaneum benefited more from priority arrival than T. confusum, and (4) available bran resources largely predicted population decline in adult beetles toward the end of the experiment. These results suggest competitive outcome in Tribolium is not always predicted by species' identity, and that performance could instead be determined by the timing of species' arrivals and available resources.
- Published
- 2020
- Full Text
- View/download PDF
44. Introducing the Black Male Life Success Theory
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Jyoti Aggarwal, MEd, Bs and EdD Aaron D. Smith
- Subjects
Phenomenon ,Black male ,Face (sociological concept) ,Narrative ,Psychology ,Construct (philosophy) ,Social psychology ,Grounded theory - Abstract
For decades, literature has described success for Black males as an unattainable phenomenon due to the nearly insurmountable hardships they face. Although this narrative has changed within the last 15 years, there are insignificant amounts of research on Black male life success. This study sought to identify and discover how 14 Black males in Central Virginia achieved life success. This study defined life success for Black males utilizing the psychological construct of well-being. This grounded theory study identified a framework for Black male life success which included a definition for life success as well as common attributes and circumstances or Black males on their journey towards life success.
- Published
- 2020
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45. Studies in the Cnemeplatiini I: A New Subtribe and Revision of the Genus Alaudes Horn (Coleoptera: Tenebrionidae: Pimeliinae: Cnemeplatiini), with Descriptions of New Species from the Southwestern USA and Mexico, Including Notes on Distribution and Biology
- Author
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Rolf L. Aalbu, Michael S. Caterino, and Aaron D. Smith
- Subjects
0106 biological sciences ,Insecta ,Arthropoda ,Ecology ,010607 zoology ,Tenebrionidae ,Colorado plateau ,Biodiversity ,Biology ,Testacea ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Myrmecophily ,Coleoptera ,Habitat ,Insect Science ,Montane ecology ,Animalia ,Taxonomy (biology) ,Pimeliinae ,Taxonomy - Abstract
The genus Alaudes Horn is revised and placed in a new subtribe, Alaudina. The genus includes A. singularis Horn, A. setigera Blaisdell, A. alternata Fall, and the following new species: A. mojavensis Aalbu, Caterino, and Smith (Mojave Desert: California and Arizona), A. coloradoensis Aalbu, Caterino, and Smith (Colorado Desert, California), A. moenkopii Aalbu, Caterino, and Smith (Colorado Plateau, northern Arizona and southern Utah), A. californicus Aalbu, Caterino, and Smith (Central Valley, California), and A. vizcainensis Aalbu, Caterino, and Smith (Vizcaino Desert: Baja California and Baja California Sur, Mexico). Alaudes fallax Fall, A. testacea Blaisdell, and A. squamosa Blaisdell are placed as new synonyms of A. singularis Horn. The subtribe Alaudina is described and diagnosed. A key is provided to the known Alaudes species. The biology of the genus is discussed, including host preference, immatures, life expectancy, and habitat diversity. All Alaudes species are associated with various species of ants (Formicidae), and some degree of colony integration is indicated by their possession of trichomes. The species span a range of habitats from extreme deserts to midelevation mesic montane forests. The immature stages are not known.
- Published
- 2018
46. Molecular phylogeny of Pedinini (Coleoptera, Tenebrionidae) and its implications for higher-level classification
- Author
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Kojun Kanda, Ryan Lumen, Marcin Jan Kamiński, Aaron D. Smith, and Dariusz Iwan
- Subjects
0106 biological sciences ,Evolutionary biology ,Molecular phylogenetics ,010607 zoology ,Animal Science and Zoology ,Biology ,010603 evolutionary biology ,01 natural sciences ,Ecology, Evolution, Behavior and Systematics - Published
- 2018
- Full Text
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47. A Revision ofCraniotusLeconte (Coleoptera: Tenebrionidae: Pimeliinae: Asidini), with Descriptions of New Insular Species from Mexico and Notes on Distribution and Biology
- Author
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Aaron D. Smith, Rolf L. Aalbu, and Francisco Sánchez Piñero
- Subjects
Insular biogeography ,Ecology ,Insect Science ,Taxonomy (biology) ,Craniotus pubescens ,Pimeliinae ,Biology ,Endemism - Abstract
The genus Craniotus LeConte is revised. The genus includes Craniotus pubescens LeConte and the following new species: Craniotus mardecortesi Aalbu, Smith, and Sanchez Pinero (Isla San Esteban, Baja California, Mexico) and Craniotus triplehorni Aalbu, Smith, and Sanchez Pinero (Gulf Islands and Baja California, Mexico). Craniotus blaisdelli Tanner is placed as a synonym of C. pubescens. This form corresponds to northern populations of C. pubescens. A key to the species is provided. The distribution and biology of the genus are briefly discussed.
- Published
- 2015
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48. Revision ofDiceroderesSolier (Coleoptera: Tenebrionidae: Toxicini: Eudysantina), with Descriptions of Four New Species
- Author
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Aaron D. Smith and Paulina Cifuentes-Ruiz
- Subjects
Single species ,Insect Science ,Biodiversity ,Montane ecology ,Zoology ,Taxonomy (biology) ,Biology - Abstract
The flightless genus Diceroderes Solier, 1841 previously contained a single species, Diceroderes mexicanus Solier, 1841, known from Mexico and Guatemala. The genus is revised based on an examination of museum material, revealing that the genus contains at least four additional species, each with a fairly limited montane distribution. Diceroderes mexicanus is redescribed and a lectotype is designated from Solier's collection. Four new species are described: Diceroderes subtriplehorni Smith and Cifuentes-Ruiz, new species, from Mexico (Veracruz and Oaxaca), Diceroderes ocozocoautlaensis Smith, new species, from Mexico (Chiapas), Diceroderes skelleyi Smith, new species, from Guatemala (El Progreso and Baja Verapaz), and Diceroderes cusucoensis Smith, new species, from Honduras (Cortes) and Guatemala (Izabal). The genus is redescribed, and a key to the known species, habitus and male genitalic images, and a distribution map are provided.
- Published
- 2015
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49. Amphidorini Leconte (Coleoptera: Tenebrionidae) of Arizona: Keys and Species Accounts
- Author
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David Fleming, Aaron D. Smith, Nico M. Franz, and M. Andrew Johnston
- Subjects
Single species ,Ecology ,Genus ,Insect Science ,Zoology ,Species identification ,Taxonomy (biology) ,Biology - Abstract
The tenebrionid tribe Amphidorini LeConte from the state of Arizona is herein reviewed. Amphidorini is represented in Arizona by four genera. Trogloderus LeConte and Neobaphion Blaisdell are each represented by a single species, Embaphion Say by three species, and Eleodes Eschscholtz by 34 species. Keys for genus and species identification are provided along with species accounts containing diagnoses, distributional ranges, and images. A complementary on—line dynamic checklist, available on the Symbiota Collections of Arthropods Network (SCAN), is presented.
- Published
- 2015
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50. Essentials of Applied Econometrics
- Author
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Aaron D. Smith, J. Edward Taylor, Aaron D. Smith, and J. Edward Taylor
- Subjects
- Econometrics--Textbooks
- Abstract
Essentials of Applied Econometrics prepares students for a world in which more data surround us every day and in which econometric tools are put to diverse uses. Written for students in economics and for professionals interested in continuing an education in econometrics, this succinct text not only teaches best practices and state-of-the-art techniques, but uses vivid examples and data obtained from a variety of real world sources. The book's emphasis on application uniquely prepares the reader for today's econometric work, which can include analyzing causal relationships or correlations in big data to obtain useful insights.
- Published
- 2017
Catalog
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