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The Trans-North Atlantic Sightings Survey (T-NASS) carried out in June-July 2007 was the fifth in a series of large-scale cetacean surveys conducted previously in 1987, 1989, 1995 and 2001. The core survey area covered an area of about 1.8 million nm² spanning from the Eastern Barents Sea at 34°E to the east coast of Canada, and between 52°N and 78°N in the east and south to 42°N in the west. We present design-based abundance estimates from the Faroese and Icelandic vessel survey components of T-NASS, as well as results from ancillary vessels which covered adjoining areas. The 4 dedicated survey vessels used a Buckland-Turnock (B-T) mode with a tracker platform searching an area ahead of the primary platform and tracking sightings to provide data for bias correction. Both uncorrected estimates, using the combined non-duplicate sightings from both platforms, and mark-recapture estimates, correcting estimates from the primary platform for bias due to perception and availability, are presented for those species with a sufficient number of sightings. Corrected estimates for the core survey area are as follows: fin whales (Balaenoptera physalus): 30,777 (CV=0.19); humpback whales (Megaptera novaeangliae): 18,105 (CV=0.43); sperm whales (Physeter macrocephalus): 12,268 (CV=0.33); long-finned pilot whales (Globicephala melas): 87,417 (CV=0.38); white-beaked dolphins (Lagenorhynchus albirostris): 91,277 (CV=0.53); and white-sided dolphins (L. acutus): 81,008 (CV=0.54). Uncorrected estimates only were possible for common minke whales (B. acutorstrata): 12,427 (CV=0.27); and sei whales (B. borealis): 5,159 (CV=0.47). Sighting rates from the ancillary vessels, which used a single platform, were lower than those from the dedicated vessels in areas where they overlapped. No evidence of responsive movement by any species was detected, but there was some indication that distance measurements by the primary platform may have been negatively biased. The significance of this for the abundance estimates is discussed. The relative merits of B-T over other survey modes are discussed and recommendations for future surveys are provided.

There are three described subspecies of fin whales (Balaenoptera physalus): B. p. physalus Linnaeus, 1758 in the Northern Hemisphere, B. p. quoyi Fischer, 1829 in the Southern Hemisphere, and a recently described pygmy form, B. p. patachonica Burmeister, 1865. The discrete distribution in the North Pacific and North Atlantic raises the question of whether a single Northern Hemisphere subspecies is valid. We assess phylogenetic patterns using similar to 16 K base pairs of the complete mitogenome for 154 fin whales from the North Pacific, North Atlantic - including the Mediterranean Sea - and Southern Hemisphere. A Bayesian tree of the resulting 136 haplotypes revealed several well-supported clades representing each ocean basin, with no haplotypes shared among ocean basins. The North Atlantic haplotypes (n = 12) form a sister clade to those from the Southern Hemisphere (n = 42). The estimated time to most recent common ancestor (TMRCA) for this Atlantic/Southern Hemisphere clade and 81 of the 97 samples from the North Pacific was approximately 2 Ma. 14 of the remaining North Pacific samples formed a well-supported clade within the Southern Hemisphere. The TMRCA for this node suggests that at least one female from the Southern Hemisphere immigrated to the North Pacific approximately 0.37 Ma. These results provide strong evidence that North Pacific and North Atlantic fin whales should not be considered the same subspecies, and suggest the need for revision of the global taxonomy of the species.

Samples were collected from 407 fin whales, Balaenoptera physalus, at four North Atlantic and one Mediterranean Sea summer feeding area as well as the Sea of Cortez in the Pacific Ocean. For each sample, the sex, the sequence of the first 288 nucleotides of the mitochondrial (mt) control region and the genotype at six microsatellite loci were determined. A significant degree of divergence was detected at all nuclear and mt loci between North Atlantic/Mediterranean Sea and the Sea of Cortez. However, the divergence time estimated from the mt sequences was substantially lower than the time elapsed since the rise of the Panama Isthmus, suggesting occasional gene flow between the North Pacific and North Atlantic ocean after the separation of the two oceans. Within the North Atlantic and Mediterranean Sea, significant levels of heterogeneity were observed in the mtDNA between the Mediterranean Sea, the eastern (Spain) and the western (the Gulf of Maine and the Gulf of St Lawrence) North Atlantic. Samples collected off West Greenland and Iceland could not be unequivocally assigned to either of the two areas. The homogeneity tests performed using the nuclear data revealed significant levels of divergence only between the Mediterranean Sea and the Gulf of St Lawrence or West Greenland. In conclusion, our results suggest the existence of several recently diverged populations in the North Atlantic and Mediterranean Sea, possibly with some limited gene flow between adjacent populations, a population structure which is consistent with earlier population models proposed by Kellogg, Ingebrigtsen, and Sergeant.