39 results on '"A. Wapniarski"'
Search Results
2. Clinical and Metagenomic Characterization of Neurological Infections of People With Human Immunodeficiency Virus in the Peruvian Amazon.
- Author
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Steinberg, Hannah, Ramachandran, Prashanth, Diestra, Andrea, Pinchi, Lynn, Ferradas, Cusi, Kirwan, Daniela, Diaz, Monica, Sciaudone, Michael, Wapniarski, Annie, Zorn, Kelsey, Calderón, Maritza, Cabrera, Lilia, Pinedo-Cancino, Viviana, Asayag, Cesar, Gilman, Robert, Bowman, Natalie, and Wilson, Michael
- Abstract
BACKGROUND: Neurological opportunistic infections cause significant morbidity and mortality in people with human immunodeficiency virus (HIV) but are difficult to diagnose. METHODS: One hundred forty people with HIV with acute neurological symptoms from Iquitos, Peru, were evaluated for cerebral toxoplasmosis with quantitative polymerase chain reaction (qPCR) of cerebrospinal fluid (CSF) and for cryptococcal meningitis with cryptococcal antigen test (CrAg) in serum or CSF. Differences between groups were assessed with standard statistical methods. A subset of samples was evaluated by metagenomic next-generation sequencing (mNGS) of CSF to compare standard diagnostics and identify additional diagnoses. RESULTS: Twenty-seven participants were diagnosed with cerebral toxoplasmosis by qPCR and 13 with cryptococcal meningitis by CrAg. Compared to participants without cerebral toxoplasmosis, abnormal Glasgow Coma Scale score (P = .05), unilateral focal motor signs (P = .01), positive Babinski reflex (P = .01), and multiple lesions on head computed tomography (CT) (P = .002) were associated with cerebral toxoplasmosis. Photophobia (P = .03) and absence of lesions on head CT (P = .02) were associated with cryptococcal meningitis. mNGS of 42 samples identified 8 cases of cerebral toxoplasmosis, 7 cases of cryptococcal meningitis, 5 possible cases of tuberculous meningitis, and incidental detections of hepatitis B virus (n = 1) and pegivirus (n = 1). mNGS had a positive percentage agreement of 71% and a negative percentage agreement of 91% with qPCR for T gondii. mNGS had a sensitivity of 78% and specificity of 100% for Cryptococcus diagnosis. CONCLUSIONS: An infection was diagnosed by any method in only 34% of participants, demonstrating the challenges of diagnosing neurological opportunistic infections in this population and highlighting the need for broader, more sensitive diagnostic tests for central nervous system infections.
- Published
- 2023
3. An autoantibody signature predictive for multiple sclerosis
- Author
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Zamecnik, Colin R., Sowa, Gavin M., Abdelhak, Ahmed, Dandekar, Ravi, Bair, Rebecca D., Wade, Kristen J., Bartley, Christopher M., Kizer, Kerry, Augusto, Danillo G., Tubati, Asritha, Gomez, Refujia, Fouassier, Camille, Gerungan, Chloe, Caspar, Colette M., Alexander, Jessica, Wapniarski, Anne E., Loudermilk, Rita P., Eggers, Erica L., Zorn, Kelsey C., Ananth, Kirtana, Jabassini, Nora, Mann, Sabrina A., Ragan, Nicholas R., Santaniello, Adam, Henry, Roland G., Baranzini, Sergio E., Zamvil, Scott S., Sabatino, Jr., Joseph J., Bove, Riley M., Guo, Chu-Yueh, Gelfand, Jeffrey M., Cuneo, Richard, von Büdingen, H.-Christian, Oksenberg, Jorge R., Cree, Bruce A. C., Hollenbach, Jill A., Green, Ari J., Hauser, Stephen L., Wallin, Mitchell T., DeRisi, Joseph L., and Wilson, Michael R.
- Published
- 2024
- Full Text
- View/download PDF
4. Application of VirCapSeq-VERT and BacCapSeq in the diagnosis of presumed and definitive neuroinfectious diseases
- Author
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Boruah, Abhilasha P., Kroopnick, Adam, Thakkar, Riddhi, Wapniarski, Anne E., Kim, Carla, Dugue, Rachelle, Harrigan, Eileen, Lipkin, W. Ian, Mishra, Nischay, and Thakur, Kiran T.
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- 2023
- Full Text
- View/download PDF
5. Integrating central nervous system metagenomics and host response for diagnosis of tuberculosis meningitis and its mimics
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Ramachandran, PS, Ramesh, A, Creswell, FV, Wapniarski, A, Narendra, R, Quinn, CM, Tran, EB, Rutakingirwa, MK, Bangdiwala, AS, Kagimu, E, Kandole, KT, Zorn, KC, Tugume, L, Kasibante, J, Ssebambulidde, K, Okirwoth, M, Bahr, NC, Musubire, A, Skipper, CP, Fouassier, C, Lyden, A, Serpa, P, Castaneda, G, Caldera, S, Ahyong, V, DeRisi, JL, Langelier, C, Crawford, ED, Boulware, DR, Meya, DB, and Wilson, MR
- Subjects
Biodefense ,Genetics ,Tuberculosis ,Prevention ,Pneumonia & Influenza ,Rare Diseases ,Vaccine Related ,Emerging Infectious Diseases ,Infectious Diseases ,Lung ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Good Health and Well Being ,Central Nervous System ,Humans ,Meningitis ,Metagenomics ,Mycobacterium tuberculosis ,Tuberculosis ,Meningeal - Abstract
The epidemiology of infectious causes of meningitis in sub-Saharan Africa is not well understood, and a common cause of meningitis in this region, Mycobacterium tuberculosis (TB), is notoriously hard to diagnose. Here we show that integrating cerebrospinal fluid (CSF) metagenomic next-generation sequencing (mNGS) with a host gene expression-based machine learning classifier (MLC) enhances diagnostic accuracy for TB meningitis (TBM) and its mimics. 368 HIV-infected Ugandan adults with subacute meningitis were prospectively enrolled. Total RNA and DNA CSF mNGS libraries were sequenced to identify meningitis pathogens. In parallel, a CSF host transcriptomic MLC to distinguish between TBM and other infections was trained and then evaluated in a blinded fashion on an independent dataset. mNGS identifies an array of infectious TBM mimics (and co-infections), including emerging, treatable, and vaccine-preventable pathogens including Wesselsbron virus, Toxoplasma gondii, Streptococcus pneumoniae, Nocardia brasiliensis, measles virus and cytomegalovirus. By leveraging the specificity of mNGS and the sensitivity of an MLC created from CSF host transcriptomes, the combined assay has high sensitivity (88.9%) and specificity (86.7%) for the detection of TBM and its many mimics. Furthermore, we achieve comparable combined assay performance at sequencing depths more amenable to performing diagnostic mNGS in low resource settings.
- Published
- 2022
6. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms.
- Author
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Song, Eric, Bartley, Christopher M, Chow, Ryan D, Ngo, Thomas T, Jiang, Ruoyi, Zamecnik, Colin R, Dandekar, Ravi, Loudermilk, Rita P, Dai, Yile, Liu, Feimei, Sunshine, Sara, Liu, Jamin, Wu, Wesley, Hawes, Isobel A, Alvarenga, Bonny D, Huynh, Trung, McAlpine, Lindsay, Rahman, Nur-Taz, Geng, Bertie, Chiarella, Jennifer, Goldman-Israelow, Benjamin, Vogels, Chantal BF, Grubaugh, Nathan D, Casanovas-Massana, Arnau, Phinney, Brett S, Salemi, Michelle, Alexander, Jessa R, Gallego, Juan A, Lencz, Todd, Walsh, Hannah, Wapniarski, Anne E, Mohanty, Subhasis, Lucas, Carolina, Klein, Jon, Mao, Tianyang, Oh, Jieun, Ring, Aaron, Spudich, Serena, Ko, Albert I, Kleinstein, Steven H, Pak, John, DeRisi, Joseph L, Iwasaki, Akiko, Pleasure, Samuel J, Wilson, Michael R, and Farhadian, Shelli F
- Subjects
COVID-19 ,SARS-CoV-2 ,autoimmunity ,cerebrospinal fluid ,neurological infection - Abstract
Individuals with coronavirus disease 2019 (COVID-19) frequently develop neurological symptoms, but the biological underpinnings of these phenomena are unknown. Through single-cell RNA sequencing (scRNA-seq) and cytokine analyses of cerebrospinal fluid (CSF) and blood from individuals with COVID-19 with neurological symptoms, we find compartmentalized, CNS-specific T cell activation and B cell responses. All affected individuals had CSF anti-severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibodies whose target epitopes diverged from serum antibodies. In an animal model, we find that intrathecal SARS-CoV-2 antibodies are present only during brain infection and not elicited by pulmonary infection. We produced CSF-derived monoclonal antibodies from an individual with COVID-19 and found that these monoclonal antibodies (mAbs) target antiviral and antineural antigens, including one mAb that reacted to spike protein and neural tissue. CSF immunoglobulin G (IgG) from 5 of 7 patients showed antineural reactivity. This immune survey reveals evidence of a compartmentalized immune response in the CNS of individuals with COVID-19 and suggests a role of autoimmunity in neurologic sequelae of COVID-19.
- Published
- 2021
7. Meningitis Caused by the Live Varicella Vaccine Virus: Metagenomic Next Generation Sequencing, Immunology Exome Sequencing and Cytokine Multiplex Profiling
- Author
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Ramachandran, Prashanth S, Wilson, Michael R, Catho, Gaud, Blanchard-Rohner, Geraldine, Schiess, Nicoline, Cohrs, Randall J, Boutolleau, David, Burrel, Sonia, Yoshikawa, Tetsushi, Wapniarski, Anne, Heusel, Ethan H, Carpenter, John E, Jackson, Wallen, Ford, Bradley A, and Grose, Charles
- Subjects
Infectious Diseases ,Vaccine Related ,Biotechnology ,Immunization ,Clinical Research ,Prevention ,Genetics ,Aetiology ,Prevention of disease and conditions ,and promotion of well-being ,3.4 Vaccines ,2.1 Biological and endogenous factors ,Infection ,Good Health and Well Being ,Adolescent ,Biomarkers ,Chickenpox Vaccine ,Child ,Cytokines ,Female ,Herpes Zoster ,High-Throughput Nucleotide Sequencing ,Humans ,Immunocompetence ,Male ,Meningitis ,Viral ,Metagenomics ,Exome Sequencing ,varicella-zoster virus ,Oka strain ,human herpesvirus 6 ,human herpesvirus 7 ,corticosteroids ,serious adverse event ,herpes zoster ,IL-6 ,IL-10 ,innate immunity ,Microbiology - Abstract
Varicella vaccine meningitis is an uncommon delayed adverse event of vaccination. Varicella vaccine meningitis has been diagnosed in 12 children, of whom 3 were immunocompromised. We now report two additional cases of vaccine meningitis in twice-immunized immunocompetent children and we perform further testing on a prior third case. We used three methods to diagnose or investigate cases of varicella vaccine meningitis, none of which have been used previously on this disease. These include metagenomic next-generation sequencing and cytokine multiplex profiling of cerebrospinal fluid and immunology exome analysis of white blood cells. In one new case, the diagnosis was confirmed by metagenomic next-generation sequencing of cerebrospinal fluid. Both varicella vaccine virus and human herpesvirus 7 DNA were detected. We performed cytokine multiplex profiling on the cerebrospinal fluid of two cases and found ten elevated biomarkers: interferon gamma, interleukins IL-1RA, IL-6, IL-8, IL-10, IL-17F, chemokines CXCL-9, CXCL-10, CCL-2, and G-CSF. In a second new case, we performed immunology exome sequencing on a panel of 356 genes, but no errors were found. After a review of all 14 cases, we concluded that (i) there is no common explanation for this adverse event, but (ii) ingestion of an oral corticosteroid burst 3-4 weeks before onset of vaccine meningitis may be a risk factor in some cases.
- Published
- 2021
8. Viral co-infection, autoimmunity, and CSF HIV antibody profiles in HIV central nervous system escape
- Author
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Hawes, I.A., Alvarenga, B.D., Browne, W., Wapniarski, A., Dandekar, R., Bartley, C.M., Sowa, G.M., DeRisi, J.L., Cinque, P., Dravid, A.N., Pleasure, S.J., Gisslen, M., Price, R.W., and Wilson, M.R.
- Published
- 2023
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9. Multiomic Analysis of Neuroinflammation and Occult Infection in Sudden Infant Death Syndrome.
- Author
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Ramachandran, Prashanth S., Okaty, Benjamin W., Riehs, Molly, Wapniarski, Anne, Hershey, Daniel, Harb, Hani, Zia, Maham, Haas, Elisabeth A., Alexandrescu, Sanda, Sleeper, Lynn A., Vargas, Sara O., Gorman, Mark P., Campman, Steven, Mena, Othon J., Levert, Keith, Hyland, Keith, Goldstein, Richard D., Wilson, Michael R., and Haynes, Robin L.
- Published
- 2024
- Full Text
- View/download PDF
10. Rozdzielnice serii OPTIMA-24 w izolacji gazowej – uwarunkowania konstrukcyjne, łukoodporność
- Author
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Stanisław Wapniarski
- Subjects
General Earth and Planetary Sciences ,General Environmental Science - Published
- 2023
11. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms
- Author
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Eric Song, Christopher M. Bartley, Ryan D. Chow, Thomas T. Ngo, Ruoyi Jiang, Colin R. Zamecnik, Ravi Dandekar, Rita P. Loudermilk, Yile Dai, Feimei Liu, Sara Sunshine, Jamin Liu, Wesley Wu, Isobel A. Hawes, Bonny D. Alvarenga, Trung Huynh, Lindsay McAlpine, Nur-Taz Rahman, Bertie Geng, Jennifer Chiarella, Benjamin Goldman-Israelow, Chantal B.F. Vogels, Nathan D. Grubaugh, Arnau Casanovas-Massana, Brett S. Phinney, Michelle Salemi, Jessa R. Alexander, Juan A. Gallego, Todd Lencz, Hannah Walsh, Anne E. Wapniarski, Subhasis Mohanty, Carolina Lucas, Jon Klein, Tianyang Mao, Jieun Oh, Aaron Ring, Serena Spudich, Albert I. Ko, Steven H. Kleinstein, John Pak, Joseph L. DeRisi, Akiko Iwasaki, Samuel J. Pleasure, Michael R. Wilson, and Shelli F. Farhadian
- Subjects
COVID-19 ,neurological infection ,autoimmunity ,cerebrospinal fluid ,SARS-CoV-2 ,Medicine (General) ,R5-920 - Abstract
Summary: Individuals with coronavirus disease 2019 (COVID-19) frequently develop neurological symptoms, but the biological underpinnings of these phenomena are unknown. Through single-cell RNA sequencing (scRNA-seq) and cytokine analyses of cerebrospinal fluid (CSF) and blood from individuals with COVID-19 with neurological symptoms, we find compartmentalized, CNS-specific T cell activation and B cell responses. All affected individuals had CSF anti-severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibodies whose target epitopes diverged from serum antibodies. In an animal model, we find that intrathecal SARS-CoV-2 antibodies are present only during brain infection and not elicited by pulmonary infection. We produced CSF-derived monoclonal antibodies from an individual with COVID-19 and found that these monoclonal antibodies (mAbs) target antiviral and antineural antigens, including one mAb that reacted to spike protein and neural tissue. CSF immunoglobulin G (IgG) from 5 of 7 patients showed antineural reactivity. This immune survey reveals evidence of a compartmentalized immune response in the CNS of individuals with COVID-19 and suggests a role of autoimmunity in neurologic sequelae of COVID-19.
- Published
- 2021
- Full Text
- View/download PDF
12. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB.
- Author
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Emily D Crawford, Irene Acosta, Vida Ahyong, Erika C Anderson, Shaun Arevalo, Daniel Asarnow, Shannon Axelrod, Patrick Ayscue, Camillia S Azimi, Caleigh M Azumaya, Stefanie Bachl, Iris Bachmutsky, Aparna Bhaduri, Jeremy Bancroft Brown, Joshua Batson, Astrid Behnert, Ryan M Boileau, Saumya R Bollam, Alain R Bonny, David Booth, Michael Jerico B Borja, David Brown, Bryan Buie, Cassandra E Burnett, Lauren E Byrnes, Katelyn A Cabral, Joana P Cabrera, Saharai Caldera, Gabriela Canales, Gloria R Castañeda, Agnes Protacio Chan, Christopher R Chang, Arthur Charles-Orszag, Carly Cheung, Unseng Chio, Eric D Chow, Y Rose Citron, Allison Cohen, Lillian B Cohn, Charles Chiu, Mitchel A Cole, Daniel N Conrad, Angela Constantino, Andrew Cote, Tre'Jon Crayton-Hall, Spyros Darmanis, Angela M Detweiler, Rebekah L Dial, Shen Dong, Elias M Duarte, David Dynerman, Rebecca Egger, Alison Fanton, Stacey M Frumm, Becky Xu Hua Fu, Valentina E Garcia, Julie Garcia, Christina Gladkova, Miriam Goldman, Rafael Gomez-Sjoberg, M Grace Gordon, James C R Grove, Shweta Gupta, Alexis Haddjeri-Hopkins, Pierce Hadley, John Haliburton, Samantha L Hao, George Hartoularos, Nadia Herrera, Melissa Hilberg, Kit Ying E Ho, Nicholas Hoppe, Shayan Hosseinzadeh, Conor J Howard, Jeffrey A Hussmann, Elizabeth Hwang, Danielle Ingebrigtsen, Julia R Jackson, Ziad M Jowhar, Danielle Kain, James Y S Kim, Amy Kistler, Oriana Kreutzfeld, Jessie Kulsuptrakul, Andrew F Kung, Charles Langelier, Matthew T Laurie, Lena Lee, Kun Leng, Kristoffer E Leon, Manuel D Leonetti, Sophia R Levan, Sam Li, Aileen W Li, Jamin Liu, Heidi S Lubin, Amy Lyden, Jennifer Mann, Sabrina Mann, Gorica Margulis, Diana M Marquez, Bryan P Marsh, Calla Martyn, Elizabeth E McCarthy, Aaron McGeever, Alexander F Merriman, Lauren K Meyer, Steve Miller, Megan K Moore, Cody T Mowery, Tanzila Mukhtar, Lusajo L Mwakibete, Noelle Narez, Norma F Neff, Lindsay A Osso, Diter Oviedo, Suping Peng, Maira Phelps, Kiet Phong, Peter Picard, Lindsey M Pieper, Neha Pincha, Angela Oliveira Pisco, Angela Pogson, Sergei Pourmal, Robert R Puccinelli, Andreas S Puschnik, Elze Rackaityte, Preethi Raghavan, Madhura Raghavan, James Reese, Joseph M Replogle, Hanna Retallack, Helen Reyes, Donald Rose, Marci F Rosenberg, Estella Sanchez-Guerrero, Sydney M Sattler, Laura Savy, Stephanie K See, Kristin K Sellers, Paula Hayakawa Serpa, Maureen Sheehy, Jonathan Sheu, Sukrit Silas, Jessica A Streithorst, Jack Strickland, Doug Stryke, Sara Sunshine, Peter Suslow, Renaldo Sutanto, Serena Tamura, Michelle Tan, Jiongyi Tan, Alice Tang, Cristina M Tato, Jack C Taylor, Iliana Tenvooren, Erin M Thompson, Edward C Thornborrow, Eric Tse, Tony Tung, Marc L Turner, Victoria S Turner, Rigney E Turnham, Mary J Turocy, Trisha V Vaidyanathan, Ilia D Vainchtein, Manu Vanaerschot, Sara E Vazquez, Anica M Wandler, Anne Wapniarski, James T Webber, Zara Y Weinberg, Alexandra Westbrook, Allison W Wong, Emily Wong, Gajus Worthington, Fang Xie, Albert Xu, Terrina Yamamoto, Ying Yang, Fauna Yarza, Yefim Zaltsman, Tina Zheng, and Joseph L DeRisi
- Subjects
Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Published
- 2020
- Full Text
- View/download PDF
13. Meningitis Caused by the Live Varicella Vaccine Virus: Metagenomic Next Generation Sequencing, Immunology Exome Sequencing and Cytokine Multiplex Profiling
- Author
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Prashanth S. Ramachandran, Michael R. Wilson, Gaud Catho, Geraldine Blanchard-Rohner, Nicoline Schiess, Randall J. Cohrs, David Boutolleau, Sonia Burrel, Tetsushi Yoshikawa, Anne Wapniarski, Ethan H. Heusel, John E. Carpenter, Wallen Jackson, Bradley A. Ford, and Charles Grose
- Subjects
varicella-zoster virus ,Oka strain ,human herpesvirus 6 ,human herpesvirus 7 ,corticosteroids ,serious adverse event ,Microbiology ,QR1-502 - Abstract
Varicella vaccine meningitis is an uncommon delayed adverse event of vaccination. Varicella vaccine meningitis has been diagnosed in 12 children, of whom 3 were immunocompromised. We now report two additional cases of vaccine meningitis in twice-immunized immunocompetent children and we perform further testing on a prior third case. We used three methods to diagnose or investigate cases of varicella vaccine meningitis, none of which have been used previously on this disease. These include metagenomic next-generation sequencing and cytokine multiplex profiling of cerebrospinal fluid and immunology exome analysis of white blood cells. In one new case, the diagnosis was confirmed by metagenomic next-generation sequencing of cerebrospinal fluid. Both varicella vaccine virus and human herpesvirus 7 DNA were detected. We performed cytokine multiplex profiling on the cerebrospinal fluid of two cases and found ten elevated biomarkers: interferon gamma, interleukins IL-1RA, IL-6, IL-8, IL-10, IL-17F, chemokines CXCL-9, CXCL-10, CCL-2, and G-CSF. In a second new case, we performed immunology exome sequencing on a panel of 356 genes, but no errors were found. After a review of all 14 cases, we concluded that (i) there is no common explanation for this adverse event, but (ii) ingestion of an oral corticosteroid burst 3–4 weeks before onset of vaccine meningitis may be a risk factor in some cases.
- Published
- 2021
- Full Text
- View/download PDF
14. Rozdzielnice serii OPTIMA-24 w izolacji gazowej – uwarunkowania konstrukcyjne, łukoodporność
- Author
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Wapniarski, Stanisław, primary
- Published
- 2023
- Full Text
- View/download PDF
15. A Predictive Autoantibody Signature in Multiple Sclerosis
- Author
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Zamecnik, Colin R., primary, Sowa, Gavin M., additional, Abdelhak, Ahmed, additional, Dandekar, Ravi, additional, Bair, Rebecca D., additional, Wade, Kristen J., additional, Bartley, Christopher M., additional, Tubati, Asritha, additional, Gomez, Refujia, additional, Fouassier, Camille, additional, Gerungan, Chloe, additional, Alexander, Jessica, additional, Wapniarski, Anne E., additional, Loudermilk, Rita P., additional, Eggers, Erica L., additional, Zorn, Kelsey C., additional, Ananth, Kirtana, additional, Jabassini, Nora, additional, Mann, Sabrina A., additional, Ragan, Nicholas R., additional, Santaniello, Adam, additional, Henry, Roland G., additional, Baranzini, Sergio E., additional, Zamvil, Scott S., additional, Bove, Riley M., additional, Guo, Chu-Yueh, additional, Gelfand, Jeffrey M., additional, Cuneo, Richard, additional, von Büdingen, H.-Christian, additional, Oksenberg, Jorge R., additional, Cree, Bruce AC, additional, Hollenbach, Jill A., additional, Green, Ari J., additional, Hauser, Stephen L., additional, Wallin, Mitchell T., additional, DeRisi, Joseph L., additional, and Wilson, Michael R., additional
- Published
- 2023
- Full Text
- View/download PDF
16. Neurological Considerations with COVID-19 Vaccinations
- Author
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Boruah, Abhilasha P., additional, Heydari, Kimia, additional, Wapniarski, Anne E., additional, Caldwell, Marissa, additional, and Thakur, Kiran T., additional
- Published
- 2023
- Full Text
- View/download PDF
17. A Predictive Autoantibody Signature in Multiple Sclerosis
- Author
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Colin R. Zamecnik, Gavin M. Sowa, Ahmed Abdelhak, Ravi Dandekar, Rebecca D. Bair, Kristen J. Wade, Christopher M. Bartley, Asritha Tubati, Refujia Gomez, Camille Fouassier, Chloe Gerungan, Jessica Alexander, Anne E. Wapniarski, Rita P. Loudermilk, Erica L. Eggers, Kelsey C. Zorn, Kirtana Ananth, Nora Jabassini, Sabrina A. Mann, Nicholas R. Ragan, Adam Santaniello, Roland G. Henry, Sergio E. Baranzini, Scott S. Zamvil, Riley M. Bove, Chu-Yueh Guo, Jeffrey M. Gelfand, Richard Cuneo, H.-Christian von Büdingen, Jorge R. Oksenberg, Bruce AC Cree, Jill A. Hollenbach, Ari J. Green, Stephen L. Hauser, Mitchell T. Wallin, Joseph L. DeRisi, and Michael R. Wilson
- Subjects
Article - Abstract
Although B cells are implicated in multiple sclerosis (MS) pathophysiology, a predictive or diagnostic autoantibody remains elusive. Here, the Department of Defense Serum Repository (DoDSR), a cohort of over 10 million individuals, was used to generate whole-proteome autoantibody profiles of hundreds of patients with MS (PwMS) years before and subsequently after MS onset. This analysis defines a unique cluster of PwMS that share an autoantibody signature against a common motif that has similarity with many human pathogens. These patients exhibit antibody reactivity years before developing MS symptoms and have higher levels of serum neurofilament light (sNfL) compared to other PwMS. Furthermore, this profile is preserved over time, providing molecular evidence for an immunologically active prodromal period years before clinical onset. This autoantibody reactivity was validated in samples from a separate incident MS cohort in both cerebrospinal fluid (CSF) and serum, where it is highly specific for patients eventually diagnosed with MS. This signature is a starting point for further immunological characterization of this MS patient subset and may be clinically useful as an antigen-specific biomarker for high-risk patients with clinically- or radiologically-isolated neuroinflammatory syndromes.
- Published
- 2023
18. Neurological Considerations with COVID-19 Vaccinations
- Author
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Abhilasha P. Boruah, Kimia Heydari, Anne E. Wapniarski, Marissa Caldwell, and Kiran T. Thakur
- Subjects
Neurology ,Neurology (clinical) - Abstract
The benefits of coronavirus disease 2019 (COVID-19) vaccination significantly outweigh its risks on a public health scale, and vaccination has been crucial in controlling the spread of SARS-CoV-2. Nonetheless, several reports of adverse events following vaccination have been published.To summarize reports to date and assess the extent and quality of evidence regarding possible serious adverse neurological events following COVID-19 vaccination, focusing on Food and Drug Administration (FDA)-approved vaccines in the United States (BNT162b2, mRNA-1273, and Ad26.COV2.S).A review of literature from five major electronic databases (PubMed, Medline, Embase, Cochrane Library, and Google Scholar) was conducted between December 1, 2020 and June 5, 2022. Articles included in the review were systematic reviews and meta-analysis, cohort studies, retrospective studies, case–control studies, case series, and reports. Editorials, letters, and animal studies were excluded, since these studies did not include quantitative data regarding adverse side effects of vaccination in human subjects.Of 149 total articles and 97 (65%) were case reports or case series. Three phase 3 trials initially conducted for BNT162b2, MRNA-1273, and Ad26.COV2.S were included in the analysis.The amount and quality of evidence for possible neurological adverse events in the context of FDA-approved COVID-19 vaccinations is overall low tier. The current body of evidence continues to suggest that COVID-19 vaccinations have a high neurological safety profile; however, the risks and benefits of vaccination must continue to be closely monitored.
- Published
- 2023
19. Łukoodporność rozdzielnic średniego napięcia - przyczyny powstania wewnętrznego łuku, badania typu, sposoby zapobiegania
- Author
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Stanisław Wapniarski
- Published
- 2022
20. Unbiased serology reveals autoimmunity and HIV antibody signatures in HIV CNS Escape
- Author
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Hawes, I.A., primary, Alvarenga, B.D., additional, Browne, W., additional, Wapniarski, A., additional, Dandekar, R., additional, Bartley, C.M., additional, Sowa, G.M., additional, DeRisi, J.L., additional, Cinque, P., additional, Dravid, A.N., additional, Pleasure, S.J., additional, Gisslen, M., additional, Price, R.W., additional, and Wilson, M.R., additional
- Published
- 2022
- Full Text
- View/download PDF
21. Pathogen and Antibody Identification in Children with Encephalitis in Myanmar
- Author
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Galardi, Maria M., primary, Sowa, Gavin M., additional, Crockett, Cameron D., additional, Rudock, Robert, additional, Smith, Alyssa E., additional, Shwe, Ei E., additional, San, Thidar, additional, Linn, Kyaw, additional, Aye, Aye Mya M., additional, Ramachandran, Prashanth S., additional, Zia, Maham, additional, Wapniarski, Anne E., additional, Hawes, Isobel A., additional, Hlaing, Chaw S., additional, Kyu, Ei H., additional, Thair, Cho, additional, Mar, Yi Y., additional, Nway, Nway, additional, Storch, Gregory A., additional, Wylie, Kristine M., additional, Wylie, Todd N., additional, Dalmau, Josep, additional, Wilson, Michael R., additional, and Mar, Soe S., additional
- Published
- 2022
- Full Text
- View/download PDF
22. Unbiased serology reveals autoimmunity and HIV antibody signatures in HIV CNS Escape
- Author
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I A Hawes, B D Alvarenga, W Browne, A Wapniarski, R Dandekar, C M Bartley, G M Sowa, J L Derisi, P Cinque, S J Pleasure, M Gisslen, R W Price, M R Wilson, M A S †, and Ameet Dravid
- Published
- 2023
- Full Text
- View/download PDF
23. Unbiased serology reveals autoimmunity and HIV antibody signatures in HIV CNS Escape
- Author
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I.A. Hawes, B.D. Alvarenga, W. Browne, A. Wapniarski, R. Dandekar, C.M. Bartley, G.M. Sowa, J.L. DeRisi, P. Cinque, A.N. Dravid, S.J. Pleasure, M. Gisslen, R.W. Price, and M.R. Wilson
- Abstract
BackgroundAntiretroviral therapy (ART) suppresses plasma and cerebrospinal fluid (CSF) HIV replication with occasional asymptomatic episodes of detectable HIV RNA known as asymptomatic (AS) escape. Neurosymptomatic (NS) CSF escape is a rare exception in which CNS HIV replication occurs in the setting of neurologic impairment. The origins of NS escape are not fully understood.MethodsUsing a large cohort of PLWH (n=111), including elite controllers (n=4), viral controllers (n=4), ART untreated subjects (n=18), HIV-associated dementia (n=4), ART suppressed (n=16), AS escape (n=19), NS escape (n=35), secondary escape (n=5) subjects, and HIV-negative controls (n=6), we investigated immunoreactivity to self-antigens in the CSF of NS escape by employing neuroanatomic CSF immunostaining and massively multiplexed self-antigen serology (PhIP-Seq). Additionally, we utilized pan-viral serology (VirScan) to deeply profile the CSF anti-viral antibody response and metagenomic next-generation sequencing (mNGS) for pathogen detection.ResultsWe detected Epstein-Barr virus (EBV) DNA more frequently in the CSF of NS escape subjects than in AS escape controls. Based on immunostaining and PhIP-Seq, there was evidence for increased immunoreactivity against self-antigens in NS escape CSF. Finally, VirScan revealed several immunodominant epitopes that map to the HIV env and gag proteins in the CSF of PLWH.DiscussionWe deployed agnostic tools to study whether there was evidence for a neuroinvasive co-infection and/or autoimmunity in HIV escape syndromes. We more frequently detected EBV DNA and immunoreactivity to self-antigens in NS escape. Whether these additional inflammatory markers are byproducts of an HIV-driven inflammatory process or whether they independently contribute to the neuropathogenesis of NS escape will require further study.
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- 2022
24. Pathogen and Antibody Identification in Children with Encephalitis in Myanmar
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Maria M. Galardi, Gavin M. Sowa, Cameron D. Crockett, Robert Rudock, Alyssa E. Smith, Ei E. Shwe, Thidar San, Kyaw Linn, Aye Mya M. Aye, Prashanth S. Ramachandran, Maham Zia, Anne E. Wapniarski, Isobel A. Hawes, Chaw S. Hlaing, Ei H. Kyu, Cho Thair, Yi Y. Mar, Nway Nway, Gregory A. Storch, Kristine M. Wylie, Todd N. Wylie, Josep Dalmau, Michael R. Wilson, and Soe S. Mar
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Neurology ,Neurology (clinical) - Abstract
Prospective studies of encephalitis are rare in regions where encephalitis is prevalent, such as low middle-income Southeast Asian countries. We compared the diagnostic yield of local and advanced tests in cases of pediatric encephalitis in Myanmar.Children with suspected subacute or acute encephalitis at Yangon Children's Hospital, Yangon, Myanmar, were prospectively recruited from 2016-2018. Cohort 1 (n = 65) had locally available diagnostic testing, whereas cohort 2 (n = 38) had advanced tests for autoantibodies (ie, cell-based assays, tissue immunostaining, studies with cultured neurons) and infections (ie, BioFire FilmArray multiplex Meningitis/Encephalitis multiplex PCR panel, metagenomic sequencing, and pan-viral serologic testing [VirScan] of cerebrospinal fluid).A total of 20 cases (13 in cohort 1 and 7 in cohort 2) were found to have illnesses other than encephalitis. Of the 52 remaining cases in cohort 1, 43 (83%) had presumed infectious encephalitis, of which 2 cases (4%) had a confirmed infectious etiology. Nine cases (17%) had presumed autoimmune encephalitis. Of the 31 cases in cohort 2, 23 (74%) had presumed infectious encephalitis, of which one (3%) had confirmed infectious etiology using local tests only, whereas 8 (26%) had presumed autoimmune encephalitis. Advanced tests confirmed an additional 10 (32%) infections, 4 (13%) possible infections, and 5 (16%) cases of N-methyl-D-aspartate receptor antibody encephalitis.Pediatric encephalitis is prevalent in Myanmar, and advanced technologies increase identification of treatable infectious and autoimmune causes. Developing affordable advanced tests to use globally represents a high clinical and research priority to improve the diagnosis and prognosis of encephalitis. ANN NEUROL 2022.
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- 2022
25. Pathogen and Antibody Identification in Children with Encephalitis in Myanmar.
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Galardi, Maria M., Sowa, Gavin M., Crockett, Cameron D., Rudock, Robert, Smith, Alyssa E., Shwe, Ei E., San, Thidar, Linn, Kyaw, Aye, Aye Mya M., Ramachandran, Prashanth S., Zia, Maham, Wapniarski, Anne E., Hawes, Isobel A., Hlaing, Chaw S., Kyu, Ei H., Thair, Cho, Mar, Yi Y., Nway, Nway, Storch, Gregory A., and Wylie, Kristine M.
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VIRAL encephalitis ,ENCEPHALITIS ,CHILDREN'S hospitals ,METHYL aspartate receptors ,RECEPTOR antibodies ,CEREBROSPINAL fluid - Abstract
Objective: Prospective studies of encephalitis are rare in regions where encephalitis is prevalent, such as low middle‐income Southeast Asian countries. We compared the diagnostic yield of local and advanced tests in cases of pediatric encephalitis in Myanmar. Methods: Children with suspected subacute or acute encephalitis at Yangon Children's Hospital, Yangon, Myanmar, were prospectively recruited from 2016–2018. Cohort 1 (n = 65) had locally available diagnostic testing, whereas cohort 2 (n = 38) had advanced tests for autoantibodies (ie, cell‐based assays, tissue immunostaining, studies with cultured neurons) and infections (ie, BioFire FilmArray multiplex Meningitis/Encephalitis multiplex PCR panel, metagenomic sequencing, and pan‐viral serologic testing [VirScan] of cerebrospinal fluid). Results: A total of 20 cases (13 in cohort 1 and 7 in cohort 2) were found to have illnesses other than encephalitis. Of the 52 remaining cases in cohort 1, 43 (83%) had presumed infectious encephalitis, of which 2 cases (4%) had a confirmed infectious etiology. Nine cases (17%) had presumed autoimmune encephalitis. Of the 31 cases in cohort 2, 23 (74%) had presumed infectious encephalitis, of which one (3%) had confirmed infectious etiology using local tests only, whereas 8 (26%) had presumed autoimmune encephalitis. Advanced tests confirmed an additional 10 (32%) infections, 4 (13%) possible infections, and 5 (16%) cases of N‐methyl‐D‐aspartate receptor antibody encephalitis. Interpretation: Pediatric encephalitis is prevalent in Myanmar, and advanced technologies increase identification of treatable infectious and autoimmune causes. Developing affordable advanced tests to use globally represents a high clinical and research priority to improve the diagnosis and prognosis of encephalitis. ANN NEUROL 2023;93:615–628 [ABSTRACT FROM AUTHOR]
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- 2023
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26. Łukoodporność rozdzielnic średniego napięcia - przyczyny powstania wewnętrznego łuku, badania typu, sposoby zapobiegania
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Wapniarski, Stanisław, primary
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- 2022
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27. Anti–SARS-CoV-2 and Autoantibody Profiles in the Cerebrospinal Fluid of 3 Teenaged Patients With COVID-19 and Subacute Neuropsychiatric Symptoms
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Bartley, Christopher M., primary, Johns, Claire, additional, Ngo, Thomas T., additional, Dandekar, Ravi, additional, Loudermilk, Rita L., additional, Alvarenga, Bonny D., additional, Hawes, Isobel A., additional, Zamecnik, Colin R., additional, Zorn, Kelsey C., additional, Alexander, Jessa R., additional, Wapniarski, Anne E., additional, DeRisi, Joseph L., additional, Francisco, Carla, additional, Nash, Kendall B., additional, Wietstock, Sharon O., additional, Pleasure, Samuel J., additional, and Wilson, Michael R., additional
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- 2021
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28. Meningitis Caused by the Live Varicella Vaccine Virus: Metagenomic Next Generation Sequencing, Immunology Exome Sequencing and Cytokine Multiplex Profiling
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Wallen Jackson, Sonia Burrel, Geraldine Blanchard-Rohner, Bradley Ford, Ethan H Heusel, John E. Carpenter, Prashanth S. Ramachandran, Michael R. Wilson, Anne E. Wapniarski, Gaud Catho, Charles Grose, Tetsushi Yoshikawa, David Boutolleau, Nicoline Schiess, Randall J. Cohrs, University of California [San Francisco] (UCSF), University of California, Geneva University Hospitals and Geneva University, Johns Hopkins University School of Medicine [Baltimore], University of Colorado Anschutz [Aurora], Institut Pierre Louis d'Epidémiologie et de Santé Publique (iPLESP), Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU), Fujita Health University, University of Iowa [Iowa City], University of California [San Francisco] (UC San Francisco), University of California (UC), and Gestionnaire, HAL Sorbonne Université 5
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Male ,Varicella vaccine ,Human herpesvirus 7 ,Human herpesvirus 6 ,Herpes zoster ,Serious adverse event ,serious adverse event ,medicine.disease_cause ,corticosteroids ,0302 clinical medicine ,innate immunity ► Show Figures ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Medicine ,Child ,innate immunity ,Exome ,Exome sequencing ,Innate immunity ,0303 health sciences ,ddc:618 ,biology ,High-Throughput Nucleotide Sequencing ,Meningitis, Viral ,QR1-502 ,3. Good health ,Vaccination ,Infectious Diseases ,IL-10 ,[SDV.MHEP.MI] Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Cytokines ,human herpesvirus 7 ,Female ,human herpesvirus 6 ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Immunocompetence ,Meningitis ,Adolescent ,herpes zoster ,Microbiology ,Article ,Virus ,Chickenpox Vaccine ,03 medical and health sciences ,Virology ,Exome Sequencing ,Humans ,Corticosteroids ,[SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,030304 developmental biology ,varicella-zoster virus ,IL-6 ,business.industry ,Varicella zoster virus ,biology.organism_classification ,medicine.disease ,Immunology ,Oka strain ,Varicella-zoster virus ,Metagenomics ,business ,Biomarkers ,030217 neurology & neurosurgery - Abstract
International audience; Varicella vaccine meningitis is an uncommon delayed adverse event of vaccination. Varicella vaccine meningitis has been diagnosed in 12 children, of whom 3 were immunocompromised. We now report two additional cases of vaccine meningitis in twice-immunized immunocompetent children and we perform further testing on a prior third case. We used three methods to diagnose or investigate cases of varicella vaccine meningitis, none of which have been used previously on this disease. These include metagenomic next-generation sequencing and cytokine multiplex profiling of cerebrospinal fluid and immunology exome analysis of white blood cells. In one new case, the diagnosis was confirmed by metagenomic next-generation sequencing of cerebrospinal fluid. Both varicella vaccine virus and human herpesvirus 7 DNA were detected. We performed cytokine multiplex profiling on the cerebrospinal fluid of two cases and found ten elevated biomarkers: interferon gamma, interleukins IL-1RA, IL-6, IL-8, IL-10, IL-17F, chemokines CXCL-9, CXCL-10, CCL-2, and G-CSF. In a second new case, we performed immunology exome sequencing on a panel of 356 genes, but no errors were found. After a review of all 14 cases, we concluded that (i) there is no common explanation for this adverse event, but (ii) ingestion of an oral corticosteroid burst 3–4 weeks before onset of vaccine meningitis may be a risk factor in some cases.
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- 2021
29. 038 Resolving infectious meningitis in uganda with metagenomics and host transcriptomics
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Saharai Caldera, John Kasibante, Micheal Okirwoth, Kelsey C. Zorn, Paula Hayakawa Serpa, David R. Boulware, Kenneth Ssebambulidde, Fiona Creswell, Morris K Rutakingirwa, Emily D. Crawford, Lillian Tugume, Carson M Quinn, Akshaya Ramesh, Annie Wapniarski, Nathan C. Bahr, Abdu K Musubire, KT Kandole, Enock Kagimu, Prashanth S. Ramachandran, Michael R. Wilson, David B. Meya, Amy Lyden, Gloria Castaneda, Chaz Langelier, and Ananta Bandigwala
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GeneXpert MTB/RIF ,business.industry ,Infectious Meningitis ,Diagnostic accuracy ,urologic and male genital diseases ,medicine.disease ,Virology ,Tuberculous meningitis ,Transcriptome ,Metagenomics ,Medicine ,business ,Area under the roc curve ,Meningitis - Abstract
Objectives Tuberculous meningitis(TBM) is a common cause of meningitis in sub-Saharan Africa. CSF PCR with GeneXpert RIF/MTB Ultra is only 70% sensitive for detection of definite/probable TBM. Many infections can mimic TBM. Metagenomic next generation sequencing(mNGS) can detect the whole diversity of infectious microbes, but can be insensitive to TB in CSF. We assessed whether leveraging CSF mNGS to identify infections combined with a machine learning classifier(MLC), based on host transcriptomic data generated by mNGS, could enhance diagnostic accuracy for TBM. Methods Prospectively enrolled 347 HIV-infected Ugandan adults with subacute meningitis: RNA/DNA libraries were made from CSF and deep sequenced. Non-human sequences were interrogated to identify pathogens. A host transcriptomic MLC was developed from human RNA transcripts using 70 cases. The MLC and mNGS reporting thresholds were then tested on 108 blinded cases within the cohort. Results mNGS was 75% concordant(27/36) for detecting TB in definite TBM cases and 59% concordant(30/51) in definite/probable TBM combined. 3 TB and 3 non-TB pathogens were detected in the probable TBM group. In the possible TBM/indeterminant groups, mNGS identified 3 cases of TBM and 17 other pathogens. The combined mNGS and host-MLC displayed 83.3%(5/6) sensitivity, 86.8%(59/68) specificity, with an area under the ROC curve of 0.83(p=0.009). Conclusion mNGS identified an array of infectious TBM mimics, including many treatable and vaccine preventable pathogens. mNGS was 75% concordant with definite TBM. We further enhanced the sensitivity of the CSF mNGS assay by developing the first CSF-based host MLC to discriminate between TBM and its mimics
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- 2021
30. 038 Resolving infectious meningitis in uganda with metagenomics and host transcriptomics
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Ramachandran, Prashanth, primary, Ramesh, Akshaya, additional, Creswell, Fiona, additional, Wapniarski, Annie, additional, Quinn, Carson, additional, Rutakingirwa, M, additional, Bandigwala, Ananta, additional, Kagimu, E, additional, Kandole, KT, additional, Zorn, Kelsey, additional, Tugume, L, additional, Kasibante, J, additional, Ssebambulidde, K, additional, Okirwoth, M, additional, Bahr, Nathan, additional, Musubire, Abdu, additional, Lyden, Amy, additional, Serpa, Paula, additional, Castaneda, Gloria, additional, Caldera, Saharai, additional, Langelier, Chaz, additional, Crawford, Emily, additional, Boulware, David, additional, Meya, David, additional, and Wilson, Michael, additional
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- 2021
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31. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB
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Becky Xu Hua Fu, Erin M. Thompson, Agnes Protacio Chan, Zara Y. Weinberg, Alain R Bonny, Samantha Hao, Nicholas Hoppe, Aparna Bhaduri, Angela Constantino, Fauna Yarza, Suping Peng, Lillian B. Cohn, Gajus Worthington, Paula Hayakawa Serpa, Diana M. Marquez, Rafael Gomez-Sjoberg, Saharai Caldera, Norma Neff, Neha Pincha, Peter Picard, Andrew Cote, Diter Oviedo, Shayan Hosseinzadeh, Robert Puccinelli, Danielle Ingebrigtsen, Serena Tamura, Sergei Pourmal, Jeffrey A. Hussmann, Anica M. Wandler, M. Grace Gordon, Irene Acosta, Shweta Gupta, Jeremy Bancroft Brown, Joseph L. DeRisi, Shannon Axelrod, Andreas S. Puschnik, Lindsey M. Pieper, Joseph M. Replogle, Valentina E. Garcia, James Reese, Patrick Ayscue, Arthur Charles-Orszag, Iliana Tenvooren, Eric Tse, Alison Fanton, Elze Rackaityte, Charles Y. Chiu, Aileen W. Li, Edward Thornborrow, Amy Lyden, Katelyn A. Cabral, Sukrit Silas, Kun Leng, Erika Anderson, Lusajo L. Mwakibete, Shaun Arevalo, Gabriela Canales, Calla Martyn, Gorica Margulis, Andrew F. Kung, Sophia R. Levan, Tanzila Mukhtar, Carly K. Cheung, Jonathan Sheu, Sam Li, Charles Langelier, Gloria Castaneda, Tina Zheng, Maureen Sheehy, Rebecca Egger, Amy Kistler, Alexander F. Merriman, Sara Sunshine, Cody T. Mowery, Madhura Raghavan, Allison Cohen, Terrina Yamamoto, Mitchel A. Cole, Saumya R. Bollam, Megan Moore, Preethi Raghavan, Jessie Kulsuptrakul, Stacey M. Frumm, Manu Vanaerschot, Fang Xie, Daniel Asarnow, Miriam Goldman, Pierce Hadley, Sara E. Vazquez, Michelle Tan, Kristin K. Sellers, Lindsay A. Osso, Lauren K. Meyer, Daniel N. Conrad, Sabrina A Mann, Vida Ahyong, Kristoffer E. Leon, Un Seng Chio, Camillia S. Azimi, Bryan Marsh, Anne E. Wapniarski, Stefanie Bachl, Kit Ying E. Ho, Rigney E. Turnham, Aaron McGeever, Cassandra E. Burnett, Rebekah Dial, Caleigh M. Azumaya, Helen Reyes, Victoria S. Turner, Jiongyi Tan, Emily D. Crawford, Allison W. Wong, Spyros Darmanis, Shen Dong, Lena Lee, Y. Rose Citron, Christopher R. Chang, Astrid Behnert, Ziad M. Jowhar, Nadia Herrera, Doug Stryke, Lauren Byrnes, Albert Xu, James C. R. Grove, Cristina M. Tato, George C. Hartoularos, Tony Tung, Iris Bachmutsky, Ryan M. Boileau, Peter Suslow, Jessica Streithorst, Alexis Haddjeri-Hopkins, John R. Haliburton, Conor J Howard, Angela Oliveira Pisco, Eric D. Chow, Elizabeth E. McCarthy, Joshua Batson, Oriana Kreutzfeld, Elizabeth Hwang, Hanna Retallack, Danielle Kain, Alice Tang, Jack C. Taylor, Emily C. Wong, Donald Rose, Julia R. Jackson, Alexandra Westbrook, Matthew T. Laurie, Jennifer Mann, Renaldo Sutanto, Mary J. Turocy, Trisha V. Vaidyanathan, Melissa Hilberg, Stephanie K. See, David S. Booth, Christina Gladkova, Jack Strickland, Julie M. Garcia, Marc L. Turner, David Dynerman, Manuel D. Leonetti, Laura Savy, Noelle Narez, Jamin Liu, Ilia D. Vainchtein, Ying Yang, Kiet T. Phong, Tre’Jon Crayton-Hall, David Brown, Marci F. Rosenberg, Bryan Buie, Maira Phelps, Sydney M. Sattler, Elias Duarte, Yefim Zaltsman, Angela M. Detweiler, Estella Sanchez-Guerrero, Joana P. Cabrera, Michael Jerico B. Borja, James Y. S. Kim, Heidi S. Lubin, Angela Pogson, Steve Miller, and James T. Webber
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RNA viruses ,Viral Diseases ,Critical Care and Emergency Medicine ,Epidemiology ,Coronaviruses ,Social Sciences ,California ,Workflow ,Medical Conditions ,COVID-19 Testing ,Medicine and Health Sciences ,Public and Occupational Health ,Biology (General) ,Pathology and laboratory medicine ,media_common ,Virus Testing ,0303 health sciences ,030302 biochemistry & molecular biology ,Art ,Medical microbiology ,Clinical Laboratory Services ,Clinical Laboratory Sciences ,Clinical Laboratories ,Infectious Diseases ,Viruses ,SARS CoV 2 ,Pathogens ,Coronavirus Infections ,2019-20 coronavirus outbreak ,Opinion ,Coronavirus disease 2019 (COVID-19) ,SARS coronavirus ,QH301-705.5 ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,media_common.quotation_subject ,Immunology ,Pneumonia, Viral ,Microbiology ,03 medical and health sciences ,Betacoronavirus ,Diagnostic Medicine ,Virology ,Genetics ,Humans ,Molecular Biology ,Pandemics ,Regulations ,030304 developmental biology ,Biology and life sciences ,Clinical Laboratory Techniques ,SARS-CoV-2 ,Organisms ,Viral pathogens ,COVID-19 ,Covid 19 ,RC581-607 ,Microbial pathogens ,Parasitology ,Law and Legal Sciences ,Immunologic diseases. Allergy ,Humanities - Abstract
Author(s): Crawford, Emily D; Acosta, Irene; Ahyong, Vida; Anderson, Erika C; Arevalo, Shaun; Asarnow, Daniel; Axelrod, Shannon; Ayscue, Patrick; Azimi, Camillia S; Azumaya, Caleigh M; Bachl, Stefanie; Bachmutsky, Iris; Bhaduri, Aparna; Brown, Jeremy Bancroft; Batson, Joshua; Behnert, Astrid; Boileau, Ryan M; Bollam, Saumya R; Bonny, Alain R; Booth, David; Borja, Michael Jerico B; Brown, David; Buie, Bryan; Burnett, Cassandra E; Byrnes, Lauren E; Cabral, Katelyn A; Cabrera, Joana P; Caldera, Saharai; Canales, Gabriela; Castaneda, Gloria R; Chan, Agnes Protacio; Chang, Christopher R; Charles-Orszag, Arthur; Cheung, Carly; Chio, Unseng; Chow, Eric D; Citron, Y Rose; Cohen, Allison; Cohn, Lillian B; Chiu, Charles; Cole, Mitchel A; Conrad, Daniel N; Constantino, Angela; Cote, Andrew; Crayton-Hall, Tre'Jon; Darmanis, Spyros; Detweiler, Angela M; Dial, Rebekah L; Dong, Shen; Duarte, Elias M; Dynerman, David; Egger, Rebecca; Fanton, Alison; Frumm, Stacey M; Fu, Becky Xu Hua; Garcia, Valentina E; Garcia, Julie; Gladkova, Christina; Goldman, Miriam; Gomez-Sjoberg, Rafael; Gordon, M Grace; Grove, James CR; Gupta, Shweta; Haddjeri-Hopkins, Alexis; Hadley, Pierce; Haliburton, John; Hao, Samantha L; Hartoularos, George; Herrera, Nadia; Hilberg, Melissa; Ho, Kit Ying E; Hoppe, Nicholas; Hosseinzadeh, Shayan; Howard, Conor J; Hussmann, Jeffrey A; Hwang, Elizabeth; Ingebrigtsen, Danielle; Jackson, Julia R; Jowhar, Ziad M; Kain, Danielle; Kim, James YS; Kistler, Amy; Kreutzfeld, Oriana; Kulsuptrakul, Jessie; Kung, Andrew F
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- 2020
32. Nowe rozwiązania techniczne w rozdzielnicach produkcji ELEKTROBUDOWY
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Stanisław Wapniarski
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- 2018
33. Anti–SARS-CoV-2 and Autoantibody Profiles in the Cerebrospinal Fluid of 3 Teenaged Patients With COVID-19 and Subacute Neuropsychiatric Symptoms
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Bonny D. Alvarenga, Michael R. Wilson, Ravi Dandekar, Sharon O. Wietstock, Anne E. Wapniarski, Colin R. Zamecnik, Claire Johns, Carla Francisco, Kelsey C. Zorn, Joseph L. DeRisi, Kendall B. Nash, Samuel J. Pleasure, Thomas T. Ngo, Christopher M. Bartley, Rita L Loudermilk, Jessa Alexander, and Isobel A. Hawes
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Male ,medicine.medical_specialty ,Neurology ,Adolescent ,Autoimmunity ,Marijuana Smoking ,Anxiety ,Antibodies, Viral ,Immunoglobulin G ,Serology ,Mice ,Transcription Factor 4 ,Cerebrospinal fluid ,medicine ,Animals ,Humans ,Online First ,Autoantibodies ,Neurologic Examination ,Movement Disorders ,biology ,business.industry ,Mental Disorders ,Research ,Brief Report ,Autoantibody ,COVID-19 ,Rapid antigen test ,Immunology ,biology.protein ,Immunohistochemistry ,Female ,Neurology (clinical) ,Nervous System Diseases ,Antibody ,business ,Comments - Abstract
Key Points Question Are anti–SARS-CoV-2 or antineural antibodies present in the cerebrospinal fluid of pediatric patients with COVID-19 and neuropsychiatric symptoms? Findings In this case series of 3 pediatric patients with subacute neuropsychiatric impairment, 2 had intrathecal anti–SARS-CoV-2 antibodies as well as intrathecal antineural antibodies. Anti–transcription factor 4 (TCF4) autoantibodies in one patient who responded to immunotherapy were validated. Meaning A subset of pediatric patients with COVID-19 and subacute neuropsychiatric symptoms have intrathecal antineural autoantibodies, suggesting central nervous system autoimmunity in pediatric patients with COVID-19 and recent neuropsychiatric symptoms., This case series examines whether anti–SARS-CoV-2 and autoreactive antibodies are present in the cerebrospinal fluid (CSF) of pediatric patients with COVID-19 and subacute neuropsychiatric dysfunction., Importance Neuropsychiatric manifestations of COVID-19 have been reported in the pediatric population. Objective To determine whether anti–SARS-CoV-2 and autoreactive antibodies are present in the cerebrospinal fluid (CSF) of pediatric patients with COVID-19 and subacute neuropsychiatric dysfunction. Design, Setting, and Participants This case series includes 3 patients with recent SARS-CoV-2 infection as confirmed by reverse transcriptase–polymerase chain reaction or IgG serology with recent exposure history who were hospitalized at the University of California, San Francisco Benioff Children’s Hospital and for whom a neurology consultation was requested over a 5-month period in 2020. During this period, 18 total children were hospitalized and tested positive for acute SARS-CoV-2 infection by reverse transcriptase–polymerase chain reaction or rapid antigen test. Main Outcomes and Measures Detection and characterization of CSF anti–SARS-CoV-2 IgG and antineural antibodies. Results Of 3 included teenaged patients, 2 patients had intrathecal anti–SARS-CoV-2 antibodies. CSF IgG from these 2 patients also indicated antineural autoantibodies on anatomic immunostaining. Autoantibodies targeting transcription factor 4 (TCF4) in 1 patient who appeared to have a robust response to immunotherapy were also validated. Conclusions and Relevance Pediatric patients with COVID-19 and prominent subacute neuropsychiatric symptoms, ranging from severe anxiety to delusional psychosis, may have anti–SARS-CoV-2 and antineural antibodies in their CSF and may respond to immunotherapy.
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- 2021
34. Rapid deployment of SARS-CoV-2 testing: The CLIAHUB
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Crawford, Emily D., primary, Acosta, Irene, additional, Ahyong, Vida, additional, Anderson, Erika C., additional, Arevalo, Shaun, additional, Asarnow, Daniel, additional, Axelrod, Shannon, additional, Ayscue, Patrick, additional, Azimi, Camillia S., additional, Azumaya, Caleigh M., additional, Bachl, Stefanie, additional, Bachmutsky, Iris, additional, Bhaduri, Aparna, additional, Brown, Jeremy Bancroft, additional, Batson, Joshua, additional, Behnert, Astrid, additional, Boileau, Ryan M., additional, Bollam, Saumya R., additional, Bonny, Alain R., additional, Booth, David, additional, Borja, Michael Jerico B., additional, Brown, David, additional, Buie, Bryan, additional, Burnett, Cassandra E., additional, Byrnes, Lauren E., additional, Cabral, Katelyn A., additional, Cabrera, Joana P., additional, Caldera, Saharai, additional, Canales, Gabriela, additional, Castañeda, Gloria R., additional, Chan, Agnes Protacio, additional, Chang, Christopher R., additional, Charles-Orszag, Arthur, additional, Cheung, Carly, additional, Chio, Unseng, additional, Chow, Eric D., additional, Citron, Y. Rose, additional, Cohen, Allison, additional, Cohn, Lillian B., additional, Chiu, Charles, additional, Cole, Mitchel A., additional, Conrad, Daniel N., additional, Constantino, Angela, additional, Cote, Andrew, additional, Crayton-Hall, Tre’Jon, additional, Darmanis, Spyros, additional, Detweiler, Angela M., additional, Dial, Rebekah L., additional, Dong, Shen, additional, Duarte, Elias M., additional, Dynerman, David, additional, Egger, Rebecca, additional, Fanton, Alison, additional, Frumm, Stacey M., additional, Fu, Becky Xu Hua, additional, Garcia, Valentina E., additional, Garcia, Julie, additional, Gladkova, Christina, additional, Goldman, Miriam, additional, Gomez-Sjoberg, Rafael, additional, Gordon, M. Grace, additional, Grove, James C. R., additional, Gupta, Shweta, additional, Haddjeri-Hopkins, Alexis, additional, Hadley, Pierce, additional, Haliburton, John, additional, Hao, Samantha L., additional, Hartoularos, George, additional, Herrera, Nadia, additional, Hilberg, Melissa, additional, Ho, Kit Ying E., additional, Hoppe, Nicholas, additional, Hosseinzadeh, Shayan, additional, Howard, Conor J., additional, Hussmann, Jeffrey A., additional, Hwang, Elizabeth, additional, Ingebrigtsen, Danielle, additional, Jackson, Julia R., additional, Jowhar, Ziad M., additional, Kain, Danielle, additional, Kim, James Y. S., additional, Kistler, Amy, additional, Kreutzfeld, Oriana, additional, Kulsuptrakul, Jessie, additional, Kung, Andrew F., additional, Langelier, Charles, additional, Laurie, Matthew T., additional, Lee, Lena, additional, Leng, Kun, additional, Leon, Kristoffer E., additional, Leonetti, Manuel D., additional, Levan, Sophia R., additional, Li, Sam, additional, Li, Aileen W., additional, Liu, Jamin, additional, Lubin, Heidi S., additional, Lyden, Amy, additional, Mann, Jennifer, additional, Mann, Sabrina, additional, Margulis, Gorica, additional, Marquez, Diana M., additional, Marsh, Bryan P., additional, Martyn, Calla, additional, McCarthy, Elizabeth E., additional, McGeever, Aaron, additional, Merriman, Alexander F., additional, Meyer, Lauren K., additional, Miller, Steve, additional, Moore, Megan K., additional, Mowery, Cody T., additional, Mukhtar, Tanzila, additional, Mwakibete, Lusajo L., additional, Narez, Noelle, additional, Neff, Norma F., additional, Osso, Lindsay A., additional, Oviedo, Diter, additional, Peng, Suping, additional, Phelps, Maira, additional, Phong, Kiet, additional, Picard, Peter, additional, Pieper, Lindsey M., additional, Pincha, Neha, additional, Pisco, Angela Oliveira, additional, Pogson, Angela, additional, Pourmal, Sergei, additional, Puccinelli, Robert R., additional, Puschnik, Andreas S., additional, Rackaityte, Elze, additional, Raghavan, Preethi, additional, Raghavan, Madhura, additional, Reese, James, additional, Replogle, Joseph M., additional, Retallack, Hanna, additional, Reyes, Helen, additional, Rose, Donald, additional, Rosenberg, Marci F., additional, Sanchez-Guerrero, Estella, additional, Sattler, Sydney M., additional, Savy, Laura, additional, See, Stephanie K., additional, Sellers, Kristin K., additional, Serpa, Paula Hayakawa, additional, Sheehy, Maureen, additional, Sheu, Jonathan, additional, Silas, Sukrit, additional, Streithorst, Jessica A., additional, Strickland, Jack, additional, Stryke, Doug, additional, Sunshine, Sara, additional, Suslow, Peter, additional, Sutanto, Renaldo, additional, Tamura, Serena, additional, Tan, Michelle, additional, Tan, Jiongyi, additional, Tang, Alice, additional, Tato, Cristina M., additional, Taylor, Jack C., additional, Tenvooren, Iliana, additional, Thompson, Erin M., additional, Thornborrow, Edward C., additional, Tse, Eric, additional, Tung, Tony, additional, Turner, Marc L., additional, Turner, Victoria S., additional, Turnham, Rigney E., additional, Turocy, Mary J., additional, Vaidyanathan, Trisha V., additional, Vainchtein, Ilia D., additional, Vanaerschot, Manu, additional, Vazquez, Sara E., additional, Wandler, Anica M., additional, Wapniarski, Anne, additional, Webber, James T., additional, Weinberg, Zara Y., additional, Westbrook, Alexandra, additional, Wong, Allison W., additional, Wong, Emily, additional, Worthington, Gajus, additional, Xie, Fang, additional, Xu, Albert, additional, Yamamoto, Terrina, additional, Yang, Ying, additional, Yarza, Fauna, additional, Zaltsman, Yefim, additional, Zheng, Tina, additional, and DeRisi, Joseph L., additional
- Published
- 2020
- Full Text
- View/download PDF
35. Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms
- Author
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Tianyang Mao, Michelle Salemi, Eric Song, Ruoyi Jiang, Jon Klein, Thomas T. Ngo, Colin R. Zamecnik, Wesley Wu, Christopher M. Bartley, Joseph L. DeRisi, Rita P. Loudermilk, Ravi Dandekar, Ji Eun Oh, Isobel A. Hawes, Lindsay S. McAlpine, Jessa Alexander, Aaron M. Ring, Ryan D. Chow, Todd Lencz, Jamin Liu, Serena Spudich, Juan A. Gallego, Steven H. Kleinstein, Akiko Iwasaki, Sara Sunshine, Albert I. Ko, Benjamin Goldman-Israelow, Bonny D. Alvarenga, Hannah Walsh, Bertie Geng, Feimei Liu, Jennifer Chiarella, Carolina Lucas, Brett S. Phinney, Nathan D. Grubaugh, Samuel J. Pleasure, Anne E. Wapniarski, Shelli F. Farhadian, Trung Huynh, John E. Pak, Arnau Casanovas-Massana, Yile Dai, Nur Taz Rahman, Chantal B.F. Vogels, Subhasis Mohanty, and Michael R. Wilson
- Subjects
Medicine (General) ,medicine.drug_class ,Monoclonal antibody ,medicine.disease_cause ,Autoimmune Disease ,Article ,cerebrospinal fluid ,General Biochemistry, Genetics and Molecular Biology ,Epitope ,Immunoglobulin G ,Autoimmunity ,Vaccine Related ,neurological infection ,R5-920 ,Immune system ,Antigen ,Biodefense ,2.1 Biological and endogenous factors ,Medicine ,Aetiology ,Lung ,Coronavirus ,biology ,SARS-CoV-2 ,business.industry ,Prevention ,autoimmunity ,Neurosciences ,COVID-19 ,Pneumonia ,Emerging Infectious Diseases ,Infectious Diseases ,Good Health and Well Being ,Neurological ,Immunology ,Pneumonia & Influenza ,biology.protein ,Immunization ,Antibody ,business ,Biotechnology - Abstract
Individuals with coronavirus disease 2019 (COVID-19) frequently develop neurological symptoms, but the biological underpinnings of these phenomena are unknown. Through single-cell RNA sequencing (scRNA-seq) and cytokine analyses of cerebrospinal fluid (CSF) and blood from individuals with COVID-19 with neurological symptoms, we find compartmentalized, CNS-specific T cell activation and B cell responses. All affected individuals had CSF anti-severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) antibodies whose target epitopes diverged from serum antibodies. In an animal model, we find that intrathecal SARS-CoV-2 antibodies are present only during brain infection and not elicited by pulmonary infection. We produced CSF-derived monoclonal antibodies from an individual with COVID-19 and found that these monoclonal antibodies (mAbs) target antiviral and antineural antigens, including one mAb that reacted to spike protein and neural tissue. CSF immunoglobulin G (IgG) from 5 of 7 patients showed antineural reactivity. This immune survey reveals evidence of a compartmentalized immune response in the CNS of individuals with COVID-19 and suggests a role of autoimmunity in neurologic sequelae of COVID-19., Graphical abstract, Neurological symptoms are frequent in hospitalized individuals with acute COVID-19. Song et al. find that, compared with control individuals, those with COVID-19 with neurologic symptoms have divergent immune responses between the CNS and periphery, including high rates of antineural autoantibodies in their CSF.
- Published
- 2021
36. Nowe rozwiązania techniczne w rozdzielnicach produkcji ELEKTROBUDOWY
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Wapniarski, Stanisław, primary
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- 2018
- Full Text
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37. The experimental production of synthetic holograms
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M. Parker Givens and William J. Siemens-Wapniarski
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Physics ,business.industry ,Materials Science (miscellaneous) ,Holography ,Object (computer science) ,Dark field microscopy ,Industrial and Manufacturing Engineering ,law.invention ,Light intensity ,Superposition principle ,Optics ,law ,Point (geometry) ,Spatial frequency ,Business and International Management ,business ,Phase modulation - Abstract
On the assumption that a hologram is a superposition of zone plates, one from each point in the object, the authors have produced, by sequential printing of zone plates, holograms which reconstruct a pattern of several bright points on a dark field. The pattern may be prescribed in advance and may be three dimensional. The validity of the method is examined mathematically.
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- 2010
38. The Experimental Production of Synthetic Holograms
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Siemens-Wapniarski, William J. and Givens, M. Parker
- Abstract
On the assumption that a hologram is a superposition of zone plates, one from each point in the object, the authors have produced, by sequential printing of zone plates, holograms which reconstruct a pattern of several bright points on a dark field. The pattern may be prescribed in advance and may be three dimensional. The validity of the method is examined mathematically.
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- 1968
39. Synthetic holograms
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Wapniarski, William Jan Siemens, Givens, Miles Parker, Wapniarski, William Jan Siemens, and Givens, Miles Parker
- Abstract
Thesis (M.S.)--University of Rochester. College of Engineering and Applied Science. Institute of Optics, 1966., The process of synthetic image formation by reconstructed wavefronts is brought to notice and based on a broad theoretical foundation. The method of optical simulation is discussed from a practical viewpoint in an attempt to establish a satisfying conceptual explanation of the phenomena and to indicate the possibilities of using synthetic holograms in future systems.
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