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Introduction. The article presents the results of paleogenetic studies of medieval human remains of three people found in a closed archaeological complex (building 32) revealed during the excavations in 2007 in the Taynitsky Garden of the Moscow Kremlin (supervisor of excavations: N.A. Makarov). Previous studies on the dating of the complex links it to the devastation of Moscow by the troops of Tokhtamysh Khan in August 1382. The archaeological layer was formed at a time as a result of a fire and contained the remains of two adults and a 3-4 year old child who remained unburied. The aim of this work was the genetic study of the ancient DNA of the remains of people who died in the 14th century, clarification of their gender, determination of kinship and presumptive origin. Material and methods. For genetic examination, teeth were selected (permanent for adults, primary for a child). The laboratory research algorithm included a set of measures to protect archaeological DNA from contamination, sample preparation and extraction of DNA from dental remains, analysis of STR markers of the Y chromosome in males, analysis of ALU markers of autosomal chromosomes, targeted NGS sequencing of hyper-variable segments of mitochondrial DNA. Results and conclusion. Using the methods of molecular genetic research, it was possible to confirm that a man, a young woman and a child (boy) died in the fire. Based on the analysis of autosomal markers, with a high degree of probability (99.9%), a close biological relationship between a woman and a child (mother-son) was revealed. The man was not a relative of either the woman or the child. The mtDNA haplogroups and STR markers of the male specific Y chromosome identified in all three individuals are generally characteristic of the Slavic population of modern Europe. The mt haplogroup J1c, found in mother and child, is now most characteristic of the inhabitants of Europe. The man has a mitochondrial haplogroup K2, which is found mainly in Northwestern Europe.

We have examined 942 skulls from the collections of the Anuchin Research Institute and Museum of Anthropology (13 craniological collections of the Arctic groups). We have analyzed the total frequency of HFI, used a comparative intergroup analysis, and evaluated the degree of HFI expression and the distribution of the trait according to sex and age. Univariate nonparametric statistics was applied. Results. It was found that the rate of HFI in the Arctic groups is much lower than in other groups of modern Eurasian and American populations. In the combined series, HFI was equally represented in both males and females. However, according to the age distribution, the male and female groups are different. HFI was more frequent in males in the Adultus and Maturus groups and in the Senilis group in females. Discussion. The significantly lower frequency of HFI in the Arctic series relative to the other modern groups show us a low level of metabolic disorders in the Arctic population and a good adaptation to the type of nutrition and living in extreme conditions. The obtained data show the predominance of the trait in the groups of mature and elderly women, and the appearance of HFI of different severity in men regardless of the age category. Probably, in the Arctic samples in women, HFI identifies metabolic disorders due to normal hormonal changes in women aging. HFI should be considered as an indicator of the presence of metabolic disorders in young and mature age in Arctic men group.

Determination of biological sex to human remains is a fundamental requirement in anthropological, archeological, and forensic anthropological studies. Sex determination based on morphological criteria is significantly limited in the cases of juvenile remains and adult skeletons in a poor state of preservation. Regular attempts have been made to use alternative techniques to resolve this issue, including analysis of tooth enamel peptides by liquid chromatography/mass spectrometry. Optimization of this method involving acid etching of tooth enamel for 10 min followed by desalting of the products of etching on SDB-RPS StageTips microcolumns and analysis of desalted sample (1/3) by liquid chromatography/mass spectrometry allowed reliable sex determination to fossil remains within a wide range of archeological and biological ages without destructing analyzed teeth. Increasing the duration of enamel etching ensured a 2 to 3-fold increase in the total number of identified peptides and, more importantly, in the number of identified fragments of amelogenin Y isoform specific for male teeth, which facilitated reliable sex determination of fossil remains. The suggested technique was tested with 8 permanent and 15 deciduous teeth of different archaeological age and different degree of preservation. Two amelogenin Y-specific peptide sequences were identified. One of these peptides [SM(+15.99)IRPPYS)] was found in all male-derived samples without exception; the other peptide [IRPPYSS(+79.97)], which contained phosphorylated Ser66 residue, was found only in the enamel from deciduous teeth, which suggests that phosphorylation of Ser66 plays a role in the enamel formation in deciduous teeth.

Archaeogenetic studies have described the formation of Eurasian ‘steppe ancestry’ as a mixture of Eastern and Caucasus hunter-gatherers. However, it remains unclear when and where this ancestry arose and whether it was related to a horizon of cultural innovations in the 4th millennium BCE that subsequently facilitated the advance of pastoral societies in Eurasia. Here we generated genome-wide SNP data from 45 prehistoric individuals along a 3000-year temporal transect in the North Caucasus. We observe a genetic separation between the groups of the Caucasus and those of the adjacent steppe. The northern Caucasus groups are genetically similar to contemporaneous populations south of it, suggesting human movement across the mountain range during the Bronze Age. The steppe groups from Yamnaya and subsequent pastoralist cultures show evidence for previously undetected farmer-related ancestry from different contact zones, while Steppe Maykop individuals harbour additional Upper Palaeolithic Siberian and Native American related ancestry., The Caucasus mountain range has impacted on the culture and genetics of the wider region. Here, the authors generate genome-wide SNP data for 45 Eneolithic and Bronze Age individuals across the Caucasus, and find distinct genetic clusters between mountain and steppe zones as well as occasional gene-flow.

Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health problem, but its past diversity and dispersal routes are largely unknown. We generated HBV genomic data from 137 Eurasians and Native Americans dated between ~10,500 and ~400 years ago. We date the most recent common ancestor of all HBV lineages to between ~20,000 and 12,000 years ago, with the virus present in European and South American hunter-gatherers during the early Holocene. After the European Neolithic transition, Mesolithic HBV strains were replaced by a lineage likely disseminated by early farmers that prevailed throughout western Eurasia for ~4000 years, declining around the end of the 2nd millennium BCE. The only remnant of this prehistoric HBV diversity is the rare genotype G, which appears to have reemerged during the HIV pandemic., The research was funded by the Max Planck Society, the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (771234–PALEoRIDER, to W.H.; 805268–CoDisEASe to K. Bos; 834616–ARCHCAUCASUS to S.H.), the Slovak Academy of Sciences and the European Union’s Seventh Framework Programme and Marie Curie Actions under the Programme SASPRO (1340/03/03 to P.C.R.), the ERA.NET RUS Plus–S&T programm of the European Union’s Seventh Framework Programme (277–BIOARCCAUCASUS to S.Re. and S.H.), the Werner Siemens Stiftung (“Paleobiochemistry”, to CW), the Award Praemium Academiae of the Czech Academy of Sciences (to M.E.), the Institute of Archaeology of the Czech Academy of Sciences (RVO 67985912, to M.Dobe.), the Russian Foundation for Basic Research (19-09-00354a, to M.K.K. and V.V.K.; 19-78-10053 to SSh), the German Research Foundation (DFG-HA-5407/4-1–INTERACT to W.H. and RE2688/2 to S.Re.), the French National Research Agency (ANR-17-FRAL-0010–INTERACT, to M.F.D., M.Ri., S.Ro., S.Sai., D.Bi., and P.Le.), the Wenner-Gren Dissertation Fieldwork Grant (9558 to S.Sab.), and the Ministry of Education and Science of the Republic of Kazakhstan (AP08856654 to L.B.D., L.M., and E.Kh. and AP08857177 to A.Z.B.).

The Viking maritime expansion from Scandinavia (Denmark, Norway, and Sweden) marks one of the swiftest and most far-flung cultural transformations in global history. During this time (c. 750 to 1050 CE), the Vikings reached most of western Eurasia, Greenland, and North America, and left a cultural legacy that persists till today. To understand the genetic structure and influence of the Viking expansion, we sequenced the genomes of 442 ancient humans from across Europe and Greenland ranging from the Bronze Age (c. 2400 BC) to the early Modern period (c. 1600 CE), with particular emphasis on the Viking Age. We find that the period preceding the Viking Age was accompanied by foreign gene flow into Scandinavia from the south and east: spreading from Denmark and eastern Sweden to the rest of Scandinavia. Despite the close linguistic similarities of modern Scandinavian languages, we observe genetic structure within Scandinavia, suggesting that regional population differences were already present 1,000 years ago. We find evidence for a majority of Danish Viking presence in England, Swedish Viking presence in the Baltic, and Norwegian Viking presence in Ireland, Iceland, and Greenland. Additionally, we see substantial foreign European ancestry entering Scandinavia during the Viking Age. We also find that several of the members of the only archaeologically well-attested Viking expedition were close family members. By comparing Viking Scandinavian genomes with present-day Scandinavian genomes, we find that pigmentation-associated loci have undergone strong population differentiation during the last millennia. Finally, we are able to trace the allele frequency dynamics of positively selected loci with unprecedented detail, including the lactase persistence allele and various alleles associated with the immune response. We conclude that the Viking diaspora was characterized by substantial foreign engagement: distinct Viking populations influenced the genomic makeup of different regions of Europe, while Scandinavia also experienced increased contact with the rest of the continent.

Ancient genomic time-transect across the Central Asian Steppe sheds new light onto the origins and demise of the Scythians., The Scythians were a multitude of horse-warrior nomad cultures dwelling in the Eurasian steppe during the first millennium BCE. Because of the lack of first-hand written records, little is known about the origins and relations among the different cultures. To address these questions, we produced genome-wide data for 111 ancient individuals retrieved from 39 archaeological sites from the first millennia BCE and CE across the Central Asian Steppe. We uncovered major admixture events in the Late Bronze Age forming the genetic substratum for two main Iron Age gene-pools emerging around the Altai and the Urals respectively. Their demise was mirrored by new genetic turnovers, linked to the spread of the eastern nomad empires in the first centuries CE. Compared to the high genetic heterogeneity of the past, the homogenization of the present-day Kazakhs gene pool is notable, likely a result of 400 years of strict exogamous social rules.

Humans have a notable capacity to withstand the ravages of infectious diseases. Smallpox killed millions of people but drove Jenner's invention of vaccination, which eventually led to the annihilation of this virus, declared in 1980. To investigate the history of smallpox, Mühlemann et al. obtained high-throughput shotgun sequencing data from 1867 human remains ranging from >31,000 to 150 years ago (see the Perspective by Alcamí). Thirteen positive samples emerged, 11 of which were northern European Viking Age people (6th to 7th century CE). Although the sequences were patchy and incomplete, four could be used to infer a phylogenetic tree. This showed distinct Viking Age lineages with multiple gene inactivations. The analysis pushes back the date of the earliest variola infection in humans by ∼1000 years and reveals the existence of a previously unknown virus clade. This is the author’s version of the work. It is posted here by permission of the AAAS for personal use, not for redistribution.

The flanks of the Caucasus Mountains and the steppe landscape to their north offered highly productive grasslands for Bronze Age herders and their flocks of sheep, goat, and cattle. While the archaeological evidence points to a largely pastoral lifestyle, knowledge regarding the general composition of human diets and their variation across landscapes and during the different phases of the Bronze Age is still restricted. Human and animal skeletal remains from the burial mounds that dominate the archaeological landscape and their stable isotope compositions are major sources of dietary information. Here, we present stable carbon and nitrogen isotope data of bone collagen of 105 human and 50 animal individuals from the 5th millennium BC to the Sarmatian period, with a strong focus on the Bronze Age and its cultural units including Maykop, Yamnaya, Novotitorovskaya, North Caucasian, Catacomb, post-Catacomb and late Bronze Age groups. The samples comprise all inhumations with sufficient bone preservation from five burial mound sites and a flat grave cemetery as well as subsamples from three further sites. They represent the Caucasus Mountains in the south, the piedmont zone and Kuban steppe with humid steppe and forest vegetation to its north, and more arid regions in the Caspian steppe. The stable isotope compositions of the bone collagen of humans and animals varied across the study area and reflect regional diversity in environmental conditions and diets. The data agree with meat, milk, and/or dairy products from domesticated herbivores, especially from sheep and goats having contributed substantially to human diets, as it is common for a largely pastoral economy. This observation is also in correspondence with the faunal remains observed in the graves and offerings of animals in the mound shells. In addition, foodstuffs with elevated carbon and nitrogen isotope values, such as meat of unweaned animals, fish, or plants, also contributed to human diets, especially among communities living in the more arid landscapes. The regional distinction of the animal and human data with few outliers points to mobility radii that were largely concentrated within the environmental zones in which the respective sites are located. In general, dietary variation among the cultural entities as well as regarding age, sex and archaeologically indicated social status is only weakly reflected. There is, however, some indication for a dietary shift during the Early Bronze Age Maykop period.

Understanding the Palaeolithic emergence of human social complexity opens up a key perspective on later periods of cultural evolution. Palaeolithic mortuary practice is particularly revealing, as it echoes the social statuses of both the living and the dead. The famous Sunghir burials fall at the beginning of this sequence. Bioarchaeological analysis of the Sunghir individuals, viewed in the context of earlier Upper Palaeolithic mortuary behaviour more generally, reveals the concurrent practice of a range of funerary treatments, some of which are probably related to individual pathological abnormalities. Through this approach, the Sunghir burials become more than just an example of elaborate Palaeolithic burial, and highlight the diversity of early social and mortuary behaviours.

Archaeological evidence indicates that the original settlement of the Altai occurred by ∼800 ka. The next major wave of hominin migration occurred by approximately 500–400 ka, followed by another one at ∼300 ka. Archaeological findings indicate a continuous evolution of lithic industries between 80 and 10 ka across the Altai. At about 55–45 ka, a small group of Neanderthals appeared in the Altai, producing various forms of lithics at places such as Okladnikov Cave and Chagyrskaya Cave. In the case of Denisova Cave, we suggest that the probable assimilation of Neanderthals occurred without any significant changes in material culture. The current archaeological patterns are well matched with the paleogenomic data from the region. Genetic data suggest that Denisovans were present in the area during at least two separate occasions and over a long period of time, with their presence perhaps interrupted by Neanderthal occupation. The analysis of odontological data shows that Denisovans preserved some archaic mo...

The Viking maritime expansion from Scandinavia (Denmark, Norway, and Sweden) marks one of the swiftest and most far-flung cultural transformations in global history. During this time (c. 750 to 1050 CE), the Vikings reached most of western Eurasia, Greenland, and North America, and left a cultural legacy that persists till today. To understand the genetic structure and influence of the Viking expansion, we sequenced the genomes of 442 ancient humans from across Europe and Greenland ranging from the Bronze Age (c. 2400 BC) to the early Modern period (c. 1600 CE), with particular emphasis on the Viking Age. We find that the period preceding the Viking Age was accompanied by foreign gene flow into Scandinavia from the south and east: spreading from Denmark and eastern Sweden to the rest of Scandinavia. Despite the close linguistic similarities of modern Scandinavian languages, we observe genetic structure within Scandinavia, suggesting that regional population differences were already present 1,000 years ago. We find evidence for a majority of Danish Viking presence in England, Swedish Viking presence in the Baltic, and Norwegian Viking presence in Ireland, Iceland, and Greenland. Additionally, we see substantial foreign European ancestry entering Scandinavia during the Viking Age. We also find that several of the members of the only archaeologically well-attested Viking expedition were close family members. By comparing Viking Scandinavian genomes with present-day Scandinavian genomes, we find that pigmentation-associated loci have undergone strong population differentiation during the last millennia. Finally, we are able to trace the allele frequency dynamics of positively selected loci with unprecedented detail, including the lactase persistence allele and various alleles associated with the immune response. We conclude that the Viking diaspora was characterized by substantial foreign engagement: distinct Viking populations influenced the genomic makeup of different regions of Europe, while Scandinavia also experienced increased contact with the rest of the continent.

International audience; The invasion of Russia by the Napoleonic Grande Armée was a complete disaster. The French army was decimated during the retreat from Russia. Thousands of victims were buried in mass graves located near several cities during the retreat. One of these mass graves was discovered in in the centre of Kaliningrad (formerly Königsberg), presently the most occidental oblast of the Russian Federation. Some skeletons revealed evidence of violence related traumatic injuries. Among them, the skeleton C2 belonged to a young male, who had suffered a serious injury to the lower face. The state of post‐traumatic remodelling indicated survival of about 2 months (between more than 6 weeks and less than 3 months).The 3D reconstruction of the mandible and the maxilla contributed additional information about the injury, its cause, and treatment. This permitted pretraumatic reconstruction of the viscerocranium and mandible through the application of two new techniques: virtual osteotomy and virtual bone transplant from another individual and perform an approximation of the face (to recreate the soft tissues) of this unidentified soldier using anthropological facial approximation in three dimensions software. These results highlight the use of 3D methods in paleopathology and forensic anthropology to reconstruct traumatic facial injuries and the pretraumatic facial appearance.

This article, based on a presentation at a meeting of the RAS Presidium, describes a reconstruction of the lifestyle of early humans who lived on the territory of the Minino archaeological complex (Vologda oblast) in different chronological periods. It is shown that the use of various natural-science methods (analysis of microelements and isotopes and radiological, zooarchaeological, paleopathological, and anthropological methods) and methods of statistics in studying anthropological materials significantly widens the number of sources that form the scope of data for the paleoecological reconstruction of the living environment at early stages of the development of society.

Summary Modern humans have inhabited the Lake Baikal region since the Upper Paleolithic, though the precise history of its peoples over this long time span is still largely unknown. Here, we report genome-wide data from 19 Upper Paleolithic to Early Bronze Age individuals from this Siberian region. An Upper Paleolithic genome shows a direct link with the First Americans by sharing the admixed ancestry that gave rise to all non-Arctic Native Americans. We also demonstrate the formation of Early Neolithic and Bronze Age Baikal populations as the result of prolonged admixture throughout the eighth to sixth millennium BP. Moreover, we detect genetic interactions with western Eurasian steppe populations and reconstruct Yersinia pestis genomes from two Early Bronze Age individuals without western Eurasian ancestry. Overall, our study demonstrates the most deeply divergent connection between Upper Paleolithic Siberians and the First Americans and reveals human and pathogen mobility across Eurasia during the Bronze Age.

Archaeogenetic studies have described the formation of Eurasian ‘steppe ancestry’ as a mixture of Eastern and Caucasus hunter-gatherers. However, it remains unclear when and where this ancestry arose and whether it was related to a horizon of cultural innovations in the 4thmillennium BCE that subsequently facilitated the advance of pastoral societies likely linked to the dispersal of Indo-European languages. To address this, we generated genome-wide SNP data from 45 prehistoric individuals along a 3000-year temporal transect in the North Caucasus. We observe a genetic separation between the groups of the Caucasus and those of the adjacent steppe. The Caucasus groups are genetically similar to contemporaneous populations south of it, suggesting that – unlike today – the Caucasus acted as a bridge rather than an insurmountable barrier to human movement. The steppe groups from Yamnaya and subsequent pastoralist cultures show evidence for previously undetected farmer-related ancestry from different contact zones, while Steppe Maykop individuals harbour additional Upper Palaeolithic Siberian and Native American related ancestry.

The study of human skeletal remains in Russia had its genesis in the late seventeenth century during the reign of Tsar Peter the Great who was instrumental in the foundation of the Kunstkamera Museum and the Russian Academy of Sciences in Saint Petersburg. Physical anthropology was recognised as a discipline in its own right during the nineteenth century, because of the efforts of scientists working in both Saint Petersburg and Moscow; this development paved the way for the modern structures within which it still operates today. The paper reviews the birth of physical anthropology in Russia and examines the concept of ‘race’ within the Russian context. Physical anthropology flourished during the Soviet era and the reasons for this are explored, while the major developments are outlined. The paper ends by examining the changes in the field that have occurred since the dissolution of the Soviet Union in 1991.

The chapter provides the reconstruction of lifestyle of the Mesolithic people in the northern part of Eastern Europe. Comparison of archaeological, archaeozoological and anthropological data demonstrates that the series analyzed represented groups of hunters on terrestrial mammals and fisherman. There are no specific features distinguishing people of the region from contemporaneous groups in the north of Europe. According to paleopathological data, Mesolithic people had no chronic diseases or infections, and the series show an insignificant percentage of occurrence of the markers of physiological stress. The radiological analysis, as well as morphological has provided the evidence of heavy physical activities of individuals in the cool conditions, which emphasizes seasonality of negative factors of the environment in the daily life of hunter-gathers and fishermen.

Two Middle Paleolithic cave sites in the Altai – Okladnikov and Chagyrskaya – have yielded dental remains (mostly isolated teeth) of individuals of various ages. A newly discovered mandibular fragment with teeth from Chagyrskaya Cave reveals a Neanderthal trait combination: anterior fossa and epicristid (midtrigonid crest) on molars, metaconid and crest on premolars. The totality of dental traits support the conclusion previously drawn on the basis of postcranial characters: Altai Neanderthals appear to be intermediate between other Eurasian Neanderthals and anatomically modern humans.

The Mid Upper Paleolithic Sunghir 3 late juvenile early modern human, from the most elaborate burial in the Pleistocene, had pathologically foreshortened and anteriorly bowed femora and, based on her dental enamel hypoplasias and transverse lines, sustained severe and persistent systemic stress throughout her decade of life. Her modest femoral and tibial asymmetry and her femoral bicondylar angles indicate non-pathological patterns of posture and locomotion. The levels of rigidity for her weight-bearing tibiae and the non-dominant left arm reflect normal weight-bearing and manipulation. These indicators are combined with an elevated level of right humeral strength, leading to pronounced humeral diaphyseal asymmetry, combined with elevated muscular insertion asymmetry. In combination with marked upper limb muscle markings and normal levels of bone formation, these reflections of her robustness indicate that she was fully mobile and participated actively in the tasks of her social group. There is no indication of the skeletal hypotrophy/atrophy that would be associated with less than full participation in the mobility and subsistence of her social group. As such, Sunghir 3 joins a growing list of developmentally or degeneratively pathological Late Pleistocene humans who nonetheless remained mobile and active. Copyright © 2012 John Wiley & Sons, Ltd.