109,081 results on '"A. Brewer"'
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2. Benefits and risks of implementing cloud-based technology for child sexual abuse investigations in Australia
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Westlake, Bryce, Brewer, Russell, Toole, Kellie, Daly, Tom, Swearingen, Thomas, Fletcher, Scott, Ucci, Franco, and Logos, Katie
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- 2024
3. Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows
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da Silva, Rafael Ferreira, Bard, Deborah, Chard, Kyle, de Witt, Shaun, Foster, Ian T., Gibbs, Tom, Goble, Carole, Godoy, William, Gustafsson, Johan, Haus, Utz-Uwe, Hudson, Stephen, Jha, Shantenu, Los, Laila, Paine, Drew, Suter, Frédéric, Ward, Logan, Wilkinson, Sean, Amaris, Marcos, Babuji, Yadu, Bader, Jonathan, Balin, Riccardo, Balouek, Daniel, Beecroft, Sarah, Belhajjame, Khalid, Bhattarai, Rajat, Brewer, Wes, Brunk, Paul, Caino-Lores, Silvina, Casanova, Henri, Cassol, Daniela, Coleman, Jared, Coleman, Taina, Colonnelli, Iacopo, Da Silva, Anderson Andrei, de Oliveira, Daniel, Elahi, Pascal, Elfaramawy, Nour, Elwasif, Wael, Etz, Brian, Fahringer, Thomas, Ferreira, Wesley, Filgueira, Rosa, Tande, Jacob Fosso, Gadelha, Luiz, Gallo, Andy, Garijo, Daniel, Georgiou, Yiannis, Gritsch, Philipp, Grubel, Patricia, Gueroudji, Amal, Guilloteau, Quentin, Hamalainen, Carlo, Enriquez, Rolando Hong, Huet, Lauren, Kesling, Kevin Hunter, Iborra, Paula, Jahangiri, Shiva, Janssen, Jan, Jordan, Joe, Kanwal, Sehrish, Kunstmann, Liliane, Lehmann, Fabian, Leser, Ulf, Li, Chen, Liu, Peini, Luettgau, Jakob, Lupat, Richard, Fernandez, Jose M., Maheshwari, Ketan, Malik, Tanu, Marquez, Jack, Matsuda, Motohiko, Medic, Doriana, Mohammadi, Somayeh, Mulone, Alberto, Navarro, John-Luke, Ng, Kin Wai, Noelp, Klaus, Kinoshita, Bruno P., Prout, Ryan, Crusoe, Michael R., Ristov, Sashko, Robila, Stefan, Rosendo, Daniel, Rowell, Billy, Rybicki, Jedrzej, Sanchez, Hector, Saurabh, Nishant, Saurav, Sumit Kumar, Scogland, Tom, Senanayake, Dinindu, Shin, Woong, Sirvent, Raul, Skluzacek, Tyler, Sly-Delgado, Barry, Soiland-Reyes, Stian, Souza, Abel, Souza, Renan, Talia, Domenico, Tallent, Nathan, Thamsen, Lauritz, Titov, Mikhail, Tovar, Benjamin, Vahi, Karan, Vardar-Irrgang, Eric, Vartina, Edite, Wang, Yuandou, Wouters, Merridee, Yu, Qi, Bkhetan, Ziad Al, and Zulfiqar, Mahnoor
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
The Workflows Community Summit gathered 111 participants from 18 countries to discuss emerging trends and challenges in scientific workflows, focusing on six key areas: time-sensitive workflows, AI-HPC convergence, multi-facility workflows, heterogeneous HPC environments, user experience, and FAIR computational workflows. The integration of AI and exascale computing has revolutionized scientific workflows, enabling higher-fidelity models and complex, time-sensitive processes, while introducing challenges in managing heterogeneous environments and multi-facility data dependencies. The rise of large language models is driving computational demands to zettaflop scales, necessitating modular, adaptable systems and cloud-service models to optimize resource utilization and ensure reproducibility. Multi-facility workflows present challenges in data movement, curation, and overcoming institutional silos, while diverse hardware architectures require integrating workflow considerations into early system design and developing standardized resource management tools. The summit emphasized improving user experience in workflow systems and ensuring FAIR workflows to enhance collaboration and accelerate scientific discovery. Key recommendations include developing standardized metrics for time-sensitive workflows, creating frameworks for cloud-HPC integration, implementing distributed-by-design workflow modeling, establishing multi-facility authentication protocols, and accelerating AI integration in HPC workflow management. The summit also called for comprehensive workflow benchmarks, workflow-specific UX principles, and a FAIR workflow maturity model, highlighting the need for continued collaboration in addressing the complex challenges posed by the convergence of AI, HPC, and multi-facility research environments.
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- 2024
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4. A Digital Twin Framework for Liquid-cooled Supercomputers as Demonstrated at Exascale
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Brewer, Wesley, Maiterth, Matthias, Kumar, Vineet, Wojda, Rafal, Bouknight, Sedrick, Hines, Jesse, Shin, Woong, Greenwood, Scott, Grant, David, Williams, Wesley, and Wang, Feiyi
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Computer Science - Distributed, Parallel, and Cluster Computing ,Computer Science - Machine Learning - Abstract
We present ExaDigiT, an open-source framework for developing comprehensive digital twins of liquid-cooled supercomputers. It integrates three main modules: (1) a resource allocator and power simulator, (2) a transient thermo-fluidic cooling model, and (3) an augmented reality model of the supercomputer and central energy plant. The framework enables the study of "what-if" scenarios, system optimizations, and virtual prototyping of future systems. Using Frontier as a case study, we demonstrate the framework's capabilities by replaying six months of system telemetry for systematic verification and validation. Such a comprehensive analysis of a liquid-cooled exascale supercomputer is the first of its kind. ExaDigiT elucidates complex transient cooling system dynamics, runs synthetic or real workloads, and predicts energy losses due to rectification and voltage conversion. Throughout our paper, we present lessons learned to benefit HPC practitioners developing similar digital twins. We envision the digital twin will be a key enabler for sustainable, energy-efficient supercomputing., Comment: 14 pages, 9 figures, To be published in the Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis. 2024
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- 2024
5. ARPOV: Expanding Visualization of Object Detection in AR with Panoramic Mosaic Stitching
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McGowan, Erin, Brewer, Ethan, and Silva, Claudio
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Computer Science - Computer Vision and Pattern Recognition - Abstract
As the uses of augmented reality (AR) become more complex and widely available, AR applications will increasingly incorporate intelligent features that require developers to understand the user's behavior and surrounding environment (e.g. an intelligent assistant). Such applications rely on video captured by an AR headset, which often contains disjointed camera movement with a limited field of view that cannot capture the full scope of what the user sees at any given time. Moreover, standard methods of visualizing object detection model outputs are limited to capturing objects within a single frame and timestep, and therefore fail to capture the temporal and spatial context that is often necessary for various domain applications. We propose ARPOV, an interactive visual analytics tool for analyzing object detection model outputs tailored to video captured by an AR headset that maximizes user understanding of model performance. The proposed tool leverages panorama stitching to expand the view of the environment while automatically filtering undesirable frames, and includes interactive features that facilitate object detection model debugging. ARPOV was designed as part of a collaboration between visualization researchers and machine learning and AR experts; we validate our design choices through interviews with 5 domain experts., Comment: 6 pages, 6 figures, to be published in SIBGRAPI 2024 - 37th conference on Graphics, Patterns, and Images proceedings
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- 2024
6. EUREC4A
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B. Stevens, S. Bony, D. Farrell, F. Ament, A. Blyth, C. Fairall, J. Karstensen, P. K. Quinn, S. Speich, C. Acquistapace, F. Aemisegger, A. L. Albright, H. Bellenger, E. Bodenschatz, K.-A. Caesar, R. Chewitt-Lucas, G. de Boer, J. Delanoë, L. Denby, F. Ewald, B. Fildier, M. Forde, G. George, S. Gross, M. Hagen, A. Hausold, K. J. Heywood, L. Hirsch, M. Jacob, F. Jansen, S. Kinne, D. Klocke, T. Kölling, H. Konow, M. Lothon, W. Mohr, A. K. Naumann, L. Nuijens, L. Olivier, R. Pincus, M. Pöhlker, G. Reverdin, G. Roberts, S. Schnitt, H. Schulz, A. P. Siebesma, C. C. Stephan, P. Sullivan, L. Touzé-Peiffer, J. Vial, R. Vogel, P. Zuidema, N. Alexander, L. Alves, S. Arixi, H. Asmath, G. Bagheri, K. Baier, A. Bailey, D. Baranowski, A. Baron, S. Barrau, P. A. Barrett, F. Batier, A. Behrendt, A. Bendinger, F. Beucher, S. Bigorre, E. Blades, P. Blossey, O. Bock, S. Böing, P. Bosser, D. Bourras, P. Bouruet-Aubertot, K. Bower, P. Branellec, H. Branger, M. Brennek, A. Brewer, P.-E. Brilouet, B. Brügmann, S. A. Buehler, E. Burke, R. Burton, R. Calmer, J.-C. Canonici, X. Carton, G. Cato Jr., J. A. Charles, P. Chazette, Y. Chen, M. T. Chilinski, T. Choularton, P. Chuang, S. Clarke, H. Coe, C. Cornet, P. Coutris, F. Couvreux, S. Crewell, T. Cronin, Z. Cui, Y. Cuypers, A. Daley, G. M. Damerell, T. Dauhut, H. Deneke, J.-P. Desbios, S. Dörner, S. Donner, V. Douet, K. Drushka, M. Dütsch, A. Ehrlich, K. Emanuel, A. Emmanouilidis, J.-C. Etienne, S. Etienne-Leblanc, G. Faure, G. Feingold, L. Ferrero, A. Fix, C. Flamant, P. J. Flatau, G. R. Foltz, L. Forster, I. Furtuna, A. Gadian, J. Galewsky, M. Gallagher, P. Gallimore, C. Gaston, C. Gentemann, N. Geyskens, A. Giez, J. Gollop, I. Gouirand, C. Gourbeyre, D. de Graaf, G. E. de Groot, R. Grosz, J. Güttler, M. Gutleben, K. Hall, G. Harris, K. C. Helfer, D. Henze, C. Herbert, B. Holanda, A. Ibanez-Landeta, J. Intrieri, S. Iyer, F. Julien, H. Kalesse, J. Kazil, A. Kellman, A. T. Kidane, U. Kirchner, M. Klingebiel, M. Körner, L. A. Kremper, J. Kretzschmar, O. Krüger, W. Kumala, A. Kurz, P. L'Hégaret, M. Labaste, T. Lachlan-Cope, A. Laing, P. Landschützer, T. Lang, D. Lange, I. Lange, C. Laplace, G. Lavik, R. Laxenaire, C. Le Bihan, M. Leandro, N. Lefevre, M. Lena, D. Lenschow, Q. Li, G. Lloyd, S. Los, N. Losi, O. Lovell, C. Luneau, P. Makuch, S. Malinowski, G. Manta, E. Marinou, N. Marsden, S. Masson, N. Maury, B. Mayer, M. Mayers-Als, C. Mazel, W. McGeary, J. C. McWilliams, M. Mech, M. Mehlmann, A. N. Meroni, T. Mieslinger, A. Minikin, P. Minnett, G. Möller, Y. Morfa Avalos, C. Muller, I. Musat, A. Napoli, A. Neuberger, C. Noisel, D. Noone, F. Nordsiek, J. L. Nowak, L. Oswald, D. J. Parker, C. Peck, R. Person, M. Philippi, A. Plueddemann, C. Pöhlker, V. Pörtge, U. Pöschl, L. Pologne, M. Posyniak, M. Prange, E. Quiñones Meléndez, J. Radtke, K. Ramage, J. Reimann, L. Renault, K. Reus, A. Reyes, J. Ribbe, M. Ringel, M. Ritschel, C. B. Rocha, N. Rochetin, J. Röttenbacher, C. Rollo, H. Royer, P. Sadoulet, L. Saffin, S. Sandiford, I. Sandu, M. Schäfer, V. Schemann, I. Schirmacher, O. Schlenczek, J. Schmidt, M. Schröder, A. Schwarzenboeck, A. Sealy, C. J. Senff, I. Serikov, S. Shohan, E. Siddle, A. Smirnov, F. Späth, B. Spooner, M. K. Stolla, W. Szkółka, S. P. de Szoeke, S. Tarot, E. Tetoni, E. Thompson, J. Thomson, L. Tomassini, J. Totems, A. A. Ubele, L. Villiger, J. von Arx, T. Wagner, A. Walther, B. Webber, M. Wendisch, S. Whitehall, A. Wiltshire, A. A. Wing, M. Wirth, J. Wiskandt, K. Wolf, L. Worbes, E. Wright, V. Wulfmeyer, S. Young, C. Zhang, D. Zhang, F. Ziemen, T. Zinner, and M. Zöger
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The science guiding the EUREC4A campaign and its measurements is presented. EUREC4A comprised roughly 5 weeks of measurements in the downstream winter trades of the North Atlantic – eastward and southeastward of Barbados. Through its ability to characterize processes operating across a wide range of scales, EUREC4A marked a turning point in our ability to observationally study factors influencing clouds in the trades, how they will respond to warming, and their link to other components of the earth system, such as upper-ocean processes or the life cycle of particulate matter. This characterization was made possible by thousands (2500) of sondes distributed to measure circulations on meso- (200 km) and larger (500 km) scales, roughly 400 h of flight time by four heavily instrumented research aircraft; four global-class research vessels; an advanced ground-based cloud observatory; scores of autonomous observing platforms operating in the upper ocean (nearly 10 000 profiles), lower atmosphere (continuous profiling), and along the air–sea interface; a network of water stable isotopologue measurements; targeted tasking of satellite remote sensing; and modeling with a new generation of weather and climate models. In addition to providing an outline of the novel measurements and their composition into a unified and coordinated campaign, the six distinct scientific facets that EUREC4A explored – from North Brazil Current rings to turbulence-induced clustering of cloud droplets and its influence on warm-rain formation – are presented along with an overview of EUREC4A's outreach activities, environmental impact, and guidelines for scientific practice. Track data for all platforms are standardized and accessible at https://doi.org/10.25326/165 (Stevens, 2021), and a film documenting the campaign is provided as a video supplement.
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- 2021
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7. The four-dimensional curriculum framework: 10 years on
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Steketee, C, Moran, M, Brewer, M, and Rogers, G D
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- 2024
8. Measurements from the RV Ronald H. Brown and related platforms as part of the Atlantic Tradewind Ocean-Atmosphere Mesoscale Interaction Campaign (ATOMIC)
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P. K. Quinn, E. J. Thompson, D. J. Coffman, S. Baidar, L. Bariteau, T. S. Bates, S. Bigorre, A. Brewer, G. de Boer, S. P. de Szoeke, K. Drushka, G. R. Foltz, J. Intrieri, S. Iyer, C. W. Fairall, C. J. Gaston, F. Jansen, J. E. Johnson, O. O. Krüger, R. D. Marchbanks, K. P. Moran, D. Noone, S. Pezoa, R. Pincus, A. J. Plueddemann, M. L. Pöhlker, U. Pöschl, E. Quinones Melendez, H. M. Royer, M. Szczodrak, J. Thomson, L. M. Upchurch, C. Zhang, D. Zhang, and P. Zuidema
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The Atlantic Tradewind Ocean-Atmosphere Mesoscale Interaction Campaign (ATOMIC) took place from 7 January to 11 July 2020 in the tropical North Atlantic between the eastern edge of Barbados and 51∘ W, the longitude of the Northwest Tropical Atlantic Station (NTAS) mooring. Measurements were made to gather information on shallow atmospheric convection, the effects of aerosols and clouds on the ocean surface energy budget, and mesoscale oceanic processes. Multiple platforms were deployed during ATOMIC including the NOAA RV Ronald H. Brown (RHB) (7 January to 13 February) and WP-3D Orion (P-3) aircraft (17 January to 10 February), the University of Colorado's Robust Autonomous Aerial Vehicle-Endurant Nimble (RAAVEN) uncrewed aerial system (UAS) (24 January to 15 February), NOAA- and NASA-sponsored Saildrones (12 January to 11 July), and Surface Velocity Program Salinity (SVPS) surface ocean drifters (23 January to 29 April). The RV Ronald H. Brown conducted in situ and remote sensing measurements of oceanic and atmospheric properties with an emphasis on mesoscale oceanic–atmospheric coupling and aerosol–cloud interactions. In addition, the ship served as a launching pad for Wave Gliders, Surface Wave Instrument Floats with Tracking (SWIFTs), and radiosondes. Details of measurements made from the RV Ronald H. Brown, ship-deployed assets, and other platforms closely coordinated with the ship during ATOMIC are provided here. These platforms include Saildrone 1064 and the RAAVEN UAS as well as the Barbados Cloud Observatory (BCO) and Barbados Atmospheric Chemistry Observatory (BACO). Inter-platform comparisons are presented to assess consistency in the data sets. Data sets from the RV Ronald H. Brown and deployed assets have been quality controlled and are publicly available at NOAA's National Centers for Environmental Information (NCEI) data archive (https://www.ncei.noaa.gov/archive/accession/ATOMIC-2020, last access: 2 April 2021). Point-of-contact information and links to individual data sets with digital object identifiers (DOIs) are provided herein.
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- 2021
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9. Personhood credentials: Artificial intelligence and the value of privacy-preserving tools to distinguish who is real online
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Adler, Steven, Hitzig, Zoë, Jain, Shrey, Brewer, Catherine, Chang, Wayne, DiResta, Renée, Lazzarin, Eddy, McGregor, Sean, Seltzer, Wendy, Siddarth, Divya, Soliman, Nouran, South, Tobin, Spelliscy, Connor, Sporny, Manu, Srivastava, Varya, Bailey, John, Christian, Brian, Critch, Andrew, Falcon, Ronnie, Flanagan, Heather, Duffy, Kim Hamilton, Ho, Eric, Leibowicz, Claire R., Nadhamuni, Srikanth, Rozenshtein, Alan Z., Schnurr, David, Shapiro, Evan, Strahm, Lacey, Trask, Andrew, Weinberg, Zoe, Whitney, Cedric, and Zick, Tom
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Computer Science - Computers and Society - Abstract
Anonymity is an important principle online. However, malicious actors have long used misleading identities to conduct fraud, spread disinformation, and carry out other deceptive schemes. With the advent of increasingly capable AI, bad actors can amplify the potential scale and effectiveness of their operations, intensifying the challenge of balancing anonymity and trustworthiness online. In this paper, we analyze the value of a new tool to address this challenge: "personhood credentials" (PHCs), digital credentials that empower users to demonstrate that they are real people -- not AIs -- to online services, without disclosing any personal information. Such credentials can be issued by a range of trusted institutions -- governments or otherwise. A PHC system, according to our definition, could be local or global, and does not need to be biometrics-based. Two trends in AI contribute to the urgency of the challenge: AI's increasing indistinguishability from people online (i.e., lifelike content and avatars, agentic activity), and AI's increasing scalability (i.e., cost-effectiveness, accessibility). Drawing on a long history of research into anonymous credentials and "proof-of-personhood" systems, personhood credentials give people a way to signal their trustworthiness on online platforms, and offer service providers new tools for reducing misuse by bad actors. In contrast, existing countermeasures to automated deception -- such as CAPTCHAs -- are inadequate against sophisticated AI, while stringent identity verification solutions are insufficiently private for many use-cases. After surveying the benefits of personhood credentials, we also examine deployment risks and design challenges. We conclude with actionable next steps for policymakers, technologists, and standards bodies to consider in consultation with the public., Comment: 63 pages, 7 figures, 5 tables; minor additions to acknowledgments and wording changes for clarity; corrected typo
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- 2024
10. Misfitting With AI: How Blind People Verify and Contest AI Errors
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Alharbi, Rahaf, Lor, Pa, Herskovitz, Jaylin, Schoenebeck, Sarita, and Brewer, Robin
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Computer Science - Human-Computer Interaction - Abstract
Blind people use artificial intelligence-enabled visual assistance technologies (AI VAT) to gain visual access in their everyday lives, but these technologies are embedded with errors that may be difficult to verify non-visually. Previous studies have primarily explored sighted users' understanding of AI output and created vision-dependent explainable AI (XAI) features. We extend this body of literature by conducting an in-depth qualitative study with 26 blind people to understand their verification experiences and preferences. We begin by describing errors blind people encounter, highlighting how AI VAT fails to support complex document layouts, diverse languages, and cultural artifacts. We then illuminate how blind people make sense of AI through experimenting with AI VAT, employing non-visual skills, strategically including sighted people, and cross-referencing with other devices. Participants provided detailed opportunities for designing accessible XAI, such as affordances to support contestation. Informed by disability studies framework of misfitting and fitting, we unpacked harmful assumptions with AI VAT, underscoring the importance of celebrating disabled ways of knowing. Lastly, we offer practical takeaways for Responsible AI practice to push the field of accessible XAI forward., Comment: To Appear in ASSETS 2024
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- 2024
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11. Pr10+ as a candidate for a high-accuracy optical clock for tests of fundamental physics
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Porsev, S. G., Cheung, C., Safronova, M. S., Bekker, H., Rehbehn, N. -H., Lopez-Urrutia, J. R. Crespo, and Brewer, S. M.
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Physics - Atomic Physics - Abstract
We propose In-like Pr10+ as a candidate for the development of a high-accuracy optical clock with high sensitivity to a time variation of the fine-structure constant, (\dot alpha}/alpha, as well as favorable experimental systematics. We calculate its low-lying energy levels by combining the configuration interaction and the coupled cluster method, achieving uncertainties as low as 0.1%, and improving previous work. We benchmark these results by comparing our calculations for the (5s^2 5p 2P_1/2) - (5s^2 5p 2P_3/2) transition in Pr10+ with a dedicated measurement and for Pr9+ with a recent experiment, respectively. In addition, we report calculated hyperfine-structure constants for the clock and logic states in Pr10+., Comment: 9 pages, 2 figures
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- 2024
12. Design and characterization of a 60-cm reflective half-wave plate for the CLASS 90 GHz band telescope
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Shi, Rui, Brewer, Michael K., Chan, Carol Yan Yan, Chuss, David T., Couto, Jullianna Denes, Eimer, Joseph R., Karakla, John, Shukawa, Koji, Valle, Deniz A. N., Appel, John W., Bennett, Charles L., Dahal, Sumit, Essinger-Hileman, Thomas, Marriage, Tobias A., Petroff, Matthew A., Rostem, Karwan, and Wollack, Edward J.
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Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Front-end polarization modulation enables improved polarization measurement stability by modulating the targeted signal above the low-frequency $1/f$ drifts associated with atmospheric and instrumental instabilities and diminishes the impact of instrumental polarization. In this work, we present the design and characterization of a new 60-cm diameter Reflective Half-Wave Plate (RHWP) polarization modulator for the 90 GHz band telescope of the Cosmology Large Angular Scale Surveyor (CLASS) project. The RHWP consists of an array of parallel wires (diameter $50~\mathrm{\mu m}$, $175~\mathrm{\mu m}$ pitch) positioned $0.88~\mathrm{mm}$ from an aluminum mirror. In lab tests, it was confirmed that the wire resonance frequency ($f_\mathrm{res}$) profile is consistent with the target, $139~\mathrm{Hz}
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- 2024
13. The Lowell Observatory Solar Telescope: A fiber feed into the EXtreme PREcision Spectrometer
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Llama, Joe, Zhao, Lily L., Brewer, John M., Szymkowiak, Andrew, Fischer, Debra A., Collins, Michael, Tiegs, Jake, and Cornelius, Frank
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
The signal induced by a temperate, terrestrial planet orbiting a Sun-like star is an order of magnitude smaller than the host stars' intrinsic variability. Understanding stellar activity is, therefore, a fundamental obstacle in confirming the smallest exoplanets. We present the Lowell Observatory Solar Telescope (LOST), a solar feed for the EXtreme PREcision Spectrometer (EXPRES) at the 4.3-m Lowell Discovery Telescope (LDT). EXPRES is one of the newest high-resolution spectrographs that accurately measure extreme radial velocity. With LOST/EXPRES, we observe disk-integrated sunlight autonomously throughout the day. In clear conditions, we achieve a ~137,500 optical spectrum of the Sun with a signal-to-noise of 500 in ~150s. Data is reduced using the standard EXPRES pipeline with minimal modification to ensure the data are comparable to the observations of other stars with the LDT. During the first three years of operation, we find a daily RMS of 71 cm/s. Additionally, having two EPRV spectrometers located in Arizona gives us an unprecedented opportunity to benchmark the performance of these planet-finders. We find a RMS of just 55 cm/s when comparing data taken simultaneously with EXPRES and NEID., Comment: SPIE Astronomical Telescopes & Instrumentation proceedings paper
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- 2024
14. An Improved Algorithm for Shortest Paths in Weighted Unit-Disk Graphs
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Brewer, Bruce W. and Wang, Haitao
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Computer Science - Computational Geometry ,Computer Science - Data Structures and Algorithms - Abstract
Let $V$ be a set of $n$ points in the plane. The unit-disk graph $G = (V, E)$ has vertex set $V$ and an edge $e_{uv} \in E$ between vertices $u, v \in V$ if the Euclidean distance between $u$ and $v$ is at most 1. The weight of each edge $e_{uv}$ is the Euclidean distance between $u$ and $v$. Given $V$ and a source point $s\in V$, we consider the problem of computing shortest paths in $G$ from $s$ to all other vertices. The previously best algorithm for this problem runs in $O(n \log^2 n)$ time [Wang and Xue, SoCG'19]. The problem has an $\Omega(n\log n)$ lower bound under the algebraic decision tree model. In this paper, we present an improved algorithm of $O(n \log^2 n / \log \log n)$ time (under the standard real RAM model). Furthermore, we show that the problem can be solved using $O(n\log n)$ comparisons under the algebraic decision tree model, matching the $\Omega(n\log n)$ lower bound., Comment: To appear in CCCG 2024
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- 2024
15. Scalable Artificial Intelligence for Science: Perspectives, Methods and Exemplars
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Brewer, Wesley, Kashi, Aditya, Dash, Sajal, Tsaris, Aristeidis, Yin, Junqi, Shankar, Mallikarjun, and Wang, Feiyi
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
In a post-ChatGPT world, this paper explores the potential of leveraging scalable artificial intelligence for scientific discovery. We propose that scaling up artificial intelligence on high-performance computing platforms is essential to address such complex problems. This perspective focuses on scientific use cases like cognitive simulations, large language models for scientific inquiry, medical image analysis, and physics-informed approaches. The study outlines the methodologies needed to address such challenges at scale on supercomputers or the cloud and provides exemplars of such approaches applied to solve a variety of scientific problems., Comment: 17 pages, 5 figures
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- 2024
16. AI-coupled HPC Workflow Applications, Middleware and Performance
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Brewer, Wes, Gainaru, Ana, Suter, Frédéric, Wang, Feiyi, Emani, Murali, and Jha, Shantenu
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
AI integration is revolutionizing the landscape of HPC simulations, enhancing the importance, use, and performance of AI-driven HPC workflows. This paper surveys the diverse and rapidly evolving field of AI-driven HPC and provides a common conceptual basis for understanding AI-driven HPC workflows. Specifically, we use insights from different modes of coupling AI into HPC workflows to propose six execution motifs most commonly found in scientific applications. The proposed set of execution motifs is by definition incomplete and evolving. However, they allow us to analyze the primary performance challenges underpinning AI-driven HPC workflows. We close with a listing of open challenges, research issues, and suggested areas of investigation including the the need for specific benchmarks that will help evaluate and improve the execution of AI-driven HPC workflows.
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- 2024
17. Interprofessional education for the next 50 years
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Brewer, Margo L, Evans, Sherryn, Gum, Lyn, Kent, Fiona, and Anakin, Megan
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- 2024
18. Anatomy beyond the Pandemic: A Q-Methodology Study Exploring Student Perceptions toward a Hybrid Curriculum
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Sai Gayathri Metla, Noori Akhtar-Danesh, Jessica Saini, Ilana Bayer, Yasmeen Mezil, Danielle Brewer-Deluce, and Bruce C. Wainman
- Abstract
As a result of the COVID-19 pandemic, anatomy education was forced to adopt online modes of delivery. Previous research on student views revealed areas of strong preference (asynchronous lectures) and strong dislike (virtual specimens) in online anatomy courses. The current study seeks to compare the views of a single cohort of students experiencing both online and in-person undergraduate introductory anatomy and physiology courses. This comparison can highlight what students consider beneficial to their education and can inform future hybrid course offerings. Q-methodology was used to assess the opinions of students. Students sorted 41 statements on anatomy education in a quasi-normally distributed grid based on their degree of agreement with the statements. The rankings underwent a by-person factor analysis which categorized students with shared perceptions into groups. Data were collected from 246 students in the primarily online fall semester and 191 students in the primarily in-person winter semester. Analysis revealed three distinct factors (groups) in the cohort. Factor one (n = 113 (fall), n = 93 (winter)), was satisfied overall with the course materials and delivery. Factor two (n = 52 (fall), n = 18 (winter)) had a deep dislike of online learning, and factor three (n = 37 (fall), n = 49 (winter)) had a strong preference for online learning. While many students were comfortable in both online and in-person learning environments, this was not the case for all learners. The strengths and weaknesses of each teaching modality suggest the opportunity to explore hybrid learning as an option for future course offerings and specifically highlight valuable aspects to incorporate from each environment.
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- 2024
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19. Neighborhood Socioeconomic Disadvantage Across the Life Course and Premature Mortality.
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Lawrence, Wayne, Kucharska-Newton, Anna, Magnani, Jared, Brewer, LaPrincess, Shiels, Meredith, George, Kristen, Lutsey, Pamela, Jenkins, Brittany, Sullivan, Kevin, Carson, April, and Freedman, Neal
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Humans ,Female ,Male ,Mortality ,Premature ,Middle Aged ,Neighborhood Characteristics ,Aged ,Adult ,Socioeconomic Factors ,Social Class ,Residence Characteristics ,Cohort Studies ,United States ,White People ,Risk Factors ,Socioeconomic Disparities in Health - Abstract
IMPORTANCE: There are consistent data demonstrating that socioeconomic disadvantage is associated with risk of premature mortality, but research on the relationship between neighborhood socioeconomic factors and premature mortality is limited. Most studies evaluating the association between neighborhood socioeconomic status (SES) and mortality have used a single assessment of SES during middle to older adulthood, thereby not considering the contribution of early life neighborhood SES. OBJECTIVE: To investigate the association of life course neighborhood SES and premature mortality. DESIGN, SETTING, AND PARTICIPANTS: This cohort study included Black and White participants of the multicenter Atherosclerosis Risk in Communities Study, a multicenter study conducted in 4 US communities: Washington County, Maryland; Forsyth County, North Carolina; Jackson, Mississippi; and the northwestern suburbs of Minneapolis, Minnesota. Participants were followed up for a mean (SD) of 18.8 (5.7) years (1996-2020). Statistical analysis was performed from March 2023 through May 2024. EXPOSURE: Participants residential addresses during childhood, young adulthood, and middle adulthood were linked with US Census-based socioeconomic indicators to create summary neighborhood SES scores for each of these life epochs. Neighborhood SES scores were categorized into distribution-based tertiles. MAIN OUTCOMES AND MEASURES: Premature death was defined as all-cause mortality occurring before age 75 years. Multivariable-adjusted Cox proportional hazards models were used to estimate hazard ratios (HRs) and 95% CIs. RESULTS: Among 12 610 study participants, the mean (SD) age at baseline was 62.6 (5.6) years; 3181 (25.2%) were Black and 9429 (74.8%) were White; and 7222 (57.3%) were women. The lowest, compared with the highest tertile, of neighborhood SES score in middle adulthood was associated with higher risk of premature mortality (HR, 1.28; 95% CI, 1.07-1.54). Similar associations were observed for neighborhood SES in young adulthood among women (HR, 1.25; 95% CI, 1.00-1.56) and neighborhood SES in childhood among White participants (HR, 1.25; 95% CI, 1.01-1.56). Participants whose neighborhood SES remained low from young to middle adulthood had an increased premature mortality risk compared with those whose neighborhood SES remained high (HR, 1.25; 95% CI, 1.05-1.49). CONCLUSIONS AND RELEVANCE: In this study, low neighborhood SES was associated with premature mortality. The risk of premature mortality was greatest among individuals experiencing persistently low neighborhood SES from young to middle adulthood. Place-based interventions that target neighborhood social determinants of health should be designed from a life course perspective that accounts for early-life socioeconomic inequality.
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- 2024
20. Rotation of the Globular Cluster Population of the Dark Matter Deficient Galaxy NGC 1052-DF4: Implication for the Total Mass
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Yuan, Li, Brewer, Brendon J., and Lewis, Geraint F.
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Statistics - Applications - Abstract
We explore the globular cluster population of NGC 1052-DF4, a dark matter deficient galaxy, using Bayesian inference to search for the presence of rotation. The existence of such a rotating component is relevant to the estimation of the mass of the galaxy, and therefore the question of whether NGC 1052-DF4 is truly deficient of dark matter, similar to NGC 1052-DF2 another galaxy in the same group. The rotational characteristics of seven globular clusters in NGC 1052-DF4 were investigated, finding that a non-rotating kinematic model has a higher Bayesian evidence than a rotating model, by a factor of approximately 2.5. In addition, we find that under the assumption of rotation, its amplitude must be small. This distinct lack of rotation strengthens the case that, based on its intrinsic velocity dispersion, NGC 1052-DF4 is a truly dark matter deficient galaxy., Comment: 9 pages 6 figures. Accepted for publication in PASA
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- 2024
21. Machine-Learned Closure of URANS for Stably Stratified Turbulence: Connecting Physical Timescales & Data Hyperparameters of Deep Time-Series Models
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Meena, Muralikrishnan Gopalakrishnan, Liousas, Demetri, Simin, Andrew D., Kashi, Aditya, Brewer, Wesley H., Riley, James J., and Kops, Stephen M. de Bruyn
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Physics - Fluid Dynamics ,Computer Science - Machine Learning ,Physics - Atmospheric and Oceanic Physics - Abstract
We develop time-series machine learning (ML) methods for closure modeling of the Unsteady Reynolds Averaged Navier Stokes (URANS) equations applied to stably stratified turbulence (SST). SST is strongly affected by fine balances between forces and becomes more anisotropic in time for decaying cases. Moreover, there is a limited understanding of the physical phenomena described by some of the terms in the URANS equations. Rather than attempting to model each term separately, it is attractive to explore the capability of machine learning to model groups of terms, i.e., to directly model the force balances. We consider decaying SST which are homogeneous and stably stratified by a uniform density gradient, enabling dimensionality reduction. We consider two time-series ML models: Long Short-Term Memory (LSTM) and Neural Ordinary Differential Equation (NODE). Both models perform accurately and are numerically stable in a posteriori tests. Furthermore, we explore the data requirements of the ML models by extracting physically relevant timescales of the complex system. We find that the ratio of the timescales of the minimum information required by the ML models to accurately capture the dynamics of the SST corresponds to the Reynolds number of the flow. The current framework provides the backbone to explore the capability of such models to capture the dynamics of higher-dimensional complex SST flows.
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- 2024
22. Dynamic Convex Hulls for Simple Paths
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Brewer, Bruce, Brodal, Gerth Stølting, and Wang, Haitao
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Computer Science - Computational Geometry ,Computer Science - Data Structures and Algorithms - Abstract
We consider the planar dynamic convex hull problem. In the literature, solutions exist supporting the insertion and deletion of points in poly-logarithmic time and various queries on the convex hull of the current set of points in logarithmic time. If arbitrary insertion and deletion of points are allowed, constant time updates and fast queries are known to be impossible. This paper considers two restricted cases where worst-case constant time updates and logarithmic time queries are possible. We assume all updates are performed on a deque (double-ended queue) of points. The first case considers the monotonic path case, where all points are sorted in a given direction, say horizontally left-to-right, and only the leftmost and rightmost points can be inserted and deleted. The second case assumes that the points in the deque constitute a simple path. Note that the monotone case is a special case of the simple path case. For both cases, we present solutions supporting deque insertions and deletions in worst-case constant time and standard queries on the convex hull of the points in $O(\log n)$ time, where $n$ is the number of points in the current point set. The convex hull of the current point set can be reported in $O(h+\log n)$ time, where $h$ is the number of edges of the convex hull. For the 1-sided monotone path case, where updates are only allowed on one side, the reporting time can be reduced to $O(h)$, and queries on the convex hull are supported in $O(\log h)$ time. All our time bounds are worst case. In addition, we prove lower bounds that match these time bounds, and thus our results are optimal. For a quick comparison, the previous best update bounds for the simple path problem were amortized $O(\log n)$ time by Friedman, Hershberger, and Snoeyink [SoCG 1989]., Comment: To appear in SoCG 2024
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- 2024
23. Traditional herders’ perception of job satisfaction and integration into society: Another obstacle to the survival of pastoralism?
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Pérez-Barbería, F. Javier, Brewer, Mark J., and Gordon, Iain J.
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- 2024
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24. Crafting Control: Exploring the Impact of Machiavellianism on Job Crafting and Job Satisfaction
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Aplin-Houtz, Matthew J., Ugwu, Lawrence E., Leahy, Sean, Standers, Mark, and Brewer, Judith
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- 2024
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25. Community Provider Perspectives on an Autism Learning Health Network: A Qualitative Study
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Kearney, Josie, Bosyj, Catherine, Rombos, Victoria, Curran, Alicia Brewer, Clark, Brenda, Cornell, Wendy, Mah, Shannon, Mahurin, Melissa, Piroddi, Nicholas, Sohl, Kristin, Zwaigenbaum, Lonnie, and Penner, Melanie
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- 2024
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26. Development of a Refugee Health Research Agenda in North America
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Brewer, Sarah E., Zeidan, Amy J., Dawson-Hahn, Elizabeth E., Agrawal, Pooja, Talavlikar, Rachel, Barnett, Elizabeth D., DiVito, Brittany M., Hauck, Fern R., Wieland, Mark L., Gren, Lisa H., Karaki, Fatima M., and Payton, Colleen
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- 2024
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27. Mood Disorder Public Stigma in Jewish Communities in the United States
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Smith, Limor L., Brewer, Kathryne B., Carr, L. Christian, Roe, David, and Gearing, Robin E.
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- 2024
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28. Intergenerational Occurrence of Premature Birth and Reproductive Health in Prematurely-Born Women in the Women’s Health Initiative
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Sullivan, Mary C., Brewer, Pamela L., Roberts, Mary B., Wild, Robert A., Shadyab, Aladdin H., Sealy-Jefferson, Shawnita, and Eaton, Charles B.
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- 2024
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29. The influence of transcranial direct current stimulation to the trigeminal nerve on attention and arousal
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Torres, Alexis S., Robison, Matthew K., McClure, Samuel M., and Brewer, Gene A.
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- 2024
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30. Tailings storage facilities, failures and disaster risk
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Hudson-Edwards, Karen A., Kemp, Deanna, Torres-Cruz, Luis Alberto, Macklin, Mark G., Brewer, Paul A., Owen, John R., Franks, Daniel M., Marquis, Eva, and Thomas, Christopher J.
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- 2024
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31. Developing and implementing social engineering-prevention policies: a qualitative study
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Steinmetz, Kevin F., Holt, Thomas J., and Brewer, Christopher G.
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- 2024
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32. Comparison of Traditional and Embedded Discrete Trial Teaching on the Acquisition of Receptive Identification Skills: A Systematic Replication in Adults with Autism
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DeBiase, Cortney, DeQuinzio, Jaime A., Brewer, Ethan, and Taylor, Bridget A.
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- 2024
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33. Front porch conversations
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Brewer, Josh and Kliewer, Brandon
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- 2023
34. The value of open access research in the age of opinion-based decision-making
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Brewer, Graham
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- 2024
35. Minijet quenching in non-equilibrium quark-gluon plasma
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Zhou, Fabian, Brewer, Jasmine, and Mazeliauskas, Aleksas
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High Energy Physics - Phenomenology ,Nuclear Theory - Abstract
We study the energy deposition and thermalisation of high-momentum on-shell partons (minijets) travelling through a non-equilibrium Quark-Gluon Plasma using QCD kinetic theory. For thermal backgrounds, we show that the parton energy first flows to the soft sector by collinear cascade and then isotropises via elastic scatterings. In contrast, the momentum deposition from a minijet reaches the equilibrium distribution directly. For expanding non-equilibrium QGP, we study the time for a minijet perturbation to lose memory of its initial conditions, namely, the hydrodynamisation time. We show that the minijet evolution scales well with the relaxation time ${\tau}_R \propto {\eta}/s/T ({\tau} )$, where $T ({\tau} )$ is the effective temperature and ${\eta}/s$ is the viscosity over entropy ratio., Comment: 38 pages, 19 figures, minor corrections and figure added, published version
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- 2024
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36. Analysis of Intracellular Communication Reveals Consistent Gene Changes Associated with Early-Stage Acne Skin
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Deng, Min, Odhiambo, Woodvine O, Qin, Min, To, Thao Tam, Brewer, Gregory M, Kheshvadjian, Alexander R, Cheng, Carol, and Agak, George W
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Biochemistry and Cell Biology ,Biomedical and Clinical Sciences ,Biological Sciences ,Genetics ,2.1 Biological and endogenous factors ,Cell-cell communication ,Cutibacterium acnes ,GRN ,IL-13RA1 ,TREM2 macrophages ,acne vulgaris ,hyperkeratinization ,inflammation ,signal distribution ,single cell and spatial transcriptomic sequencing - Abstract
A comprehensive understanding of the intricate cellular and molecular changes governing the complex interactions between cells within acne lesions is currently lacking. Herein, we analyzed early papules from six subjects with active acne vulgaris, utilizing single-cell and high-resolution spatial RNA sequencing. We observed significant changes in signaling pathways across seven different cell types when comparing lesional skin samples (LSS) to healthy skin samples (HSS). Using CellChat, we constructed an atlas of signaling pathways for the HSS, identifying key signal distributions and cell-specific genes within individual clusters. Further, our comparative analysis revealed changes in 49 signaling pathways across all cell clusters in the LSS- 4 exhibited decreased activity, whereas 45 were upregulated, suggesting that acne significantly alters cellular dynamics. We identified ten molecules, including GRN, IL-13RA1 and SDC1 that were consistently altered in all donors. Subsequently, we focused on the function of GRN and IL-13RA1 in TREM2 macrophages and keratinocytes as these cells participate in inflammation and hyperkeratinization in the early stages of acne development. We evaluated their function in TREM2 macrophages and the HaCaT cell line. We found that GRN increased the expression of proinflammatory cytokines and chemokines, including IL-18, CCL5, and CXCL2 in TREM2 macrophages. Additionally, the activation of IL-13RA1 by IL-13 in HaCaT cells promoted the dysregulation of genes associated with hyperkeratinization, including KRT17, KRT16, and FLG. These findings suggest that modulating the GRN-SORT1 and IL-13-IL-13RA1 signaling pathways could be a promising approach for developing new acne treatments.
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- 2024
37. A mitochondrial-targeted activity-based sensing probe for ratiometric imaging of formaldehyde reveals key regulators of the mitochondrial one-carbon pool.
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Tenney, Logan, Pham, Vanha, Brewer, Thomas, and Chang, Christopher
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Formaldehyde (FA) is both a highly reactive environmental genotoxin and an endogenously produced metabolite that functions as a signaling molecule and one-carbon (1C) store to regulate 1C metabolism and epigenetics in the cell. Owing to its signal-stress duality, cells have evolved multiple clearance mechanisms to maintain FA homeostasis, acting to avoid the established genotoxicity of FA while also redirecting FA-derived carbon units into the biosynthesis of essential nucleobases and amino acids. The highly compartmentalized nature of FA exposure, production, and regulation motivates the development of chemical tools that enable monitoring of transient FA fluxes with subcellular resolution. Here we report a mitochondrial-targeted, activity-based sensing probe for ratiometric FA detection, MitoRFAP-2, and apply this reagent to monitor endogenous mitochondrial sources and sinks of this 1C unit. We establish the utility of subcellular localization by showing that MitoRFAP-2 is sensitive enough to detect changes in mitochondrial FA pools with genetic and pharmacological modulation of enzymes involved in 1C and amino acid metabolism, including the pervasive, less active genetic mutant aldehyde dehydrogenase 2*2 (ALDH2*2), where previous, non-targeted versions of FA sensors are not. Finally, we used MitoRFAP-2 to comparatively profile basal levels of FA across a panel of breast cancer cell lines, finding that FA-dependent fluorescence correlates with expression levels of enzymes involved in 1C metabolism. By showcasing the ability of MitoRFAP-2 to identify new information on mitochondrial FA homeostasis, this work provides a starting point for the design of a broader range of chemical probes for detecting physiologically important aldehydes with subcellular resolution and a useful reagent for further studies of 1C biology.
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- 2024
38. Spindle oscillations in communicating axons within a reconstituted hippocampal formation are strongest in CA3 without thalamus.
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Wang, Mengke, Lassers, Samuel, Vakilna, Yash, Mander, Bryce, Tang, William, and Brewer, Gregory
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Axon ,Axons ,CA1 ,CA3 ,Dentate ,EEG waves ,Entorhinal ,Hippocampus ,LFP ,Oscillation ,Spindle ,Humans ,Hippocampus ,Thalamus ,Cerebral Cortex ,Axons ,Neurons ,Electroencephalography ,Sleep - Abstract
Spindle-shaped waves of oscillations emerge in EEG scalp recordings during human and rodent non-REM sleep. The association of these 10-16 Hz oscillations with events during prior wakefulness suggests a role in memory consolidation. Human and rodent depth electrodes in the brain record strong spindles throughout the cortex and hippocampus, with possible origins in the thalamus. However, the source and targets of the spindle oscillations from the hippocampus are unclear. Here, we employed an in vitro reconstruction of four subregions of the hippocampal formation with separate microfluidic tunnels for single axon communication between subregions assembled on top of a microelectrode array. We recorded spontaneous 400-1000 ms long spindle waves at 10-16 Hz in single axons passing between subregions as well as from individual neurons in those subregions. Spindles were nested within slow waves. The highest amplitudes and most frequent occurrence suggest origins in CA3 neurons that send feed-forward axons into CA1 and feedback axons into DG. Spindles had 50-70% slower conduction velocities than spikes and were not phase-locked to spikes suggesting that spindle mechanisms are independent of action potentials. Therefore, consolidation of declarative-cognitive memories in the hippocampus may be separate from the more easily accessible consolidation of memories related to thalamic motor function.
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- 2024
39. Parameter Space and Potential for Biomarker Development in 25 Years of fMRI Drug Cue Reactivity: A Systematic Review.
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Sangchooli, Arshiya, Zare-Bidoky, Mehran, Fathi Jouzdani, Ali, Schacht, Joseph, Bjork, James, Claus, Eric, Prisciandaro, James, Wilson, Stephen, Wüstenberg, Torsten, Potvin, Stéphane, Ahmadi, Pooria, Bach, Patrick, Baldacchino, Alex, Beck, Anne, Brady, Kathleen, Brewer, Judson, Childress, Anna, Courtney, Kelly, Ebrahimi, Mohsen, Filbey, Francesca, Garavan, Hugh, Ghahremani, Dara, Goldstein, Rita, Goudriaan, Anneke, Grodin, Erica, Hanlon, Colleen, Haugg, Amelie, Heilig, Markus, Heinz, Andreas, Holczer, Adrienn, Van Holst, Ruth, Joseph, Jane, Juliano, Anthony, Kaufman, Marc, Kiefer, Falk, Khojasteh Zonoozi, Arash, Kuplicki, Rayus, Leyton, Marco, London, Edythe, Mackey, Scott, McClernon, F, Mellick, William, Morley, Kirsten, Noori, Hamid, Oghabian, Mohammad, Oliver, Jason, Owens, Max, Paulus, Martin, Perini, Irene, Rafei, Parnian, Ray, Lara, Sinha, Rajita, Smolka, Michael, Soleimani, Ghazaleh, Spanagel, Rainer, Steele, Vaughn, Tapert, Susan, Vollstädt-Klein, Sabine, Wetherill, Reagan, Witkiewitz, Katie, Yuan, Kai, Zhang, Xiaochu, Verdejo-Garcia, Antonio, Potenza, Marc, Janes, Amy, Kober, Hedy, Zilverstand, Anna, and Ekhtiari, Hamed
- Abstract
IMPORTANCE: In the last 25 years, functional magnetic resonance imaging drug cue reactivity (FDCR) studies have characterized some core aspects in the neurobiology of drug addiction. However, no FDCR-derived biomarkers have been approved for treatment development or clinical adoption. Traversing this translational gap requires a systematic assessment of the FDCR literature evidence, its heterogeneity, and an evaluation of possible clinical uses of FDCR-derived biomarkers. OBJECTIVE: To summarize the state of the field of FDCR, assess their potential for biomarker development, and outline a clear process for biomarker qualification to guide future research and validation efforts. EVIDENCE REVIEW: The PubMed and Medline databases were searched for every original FDCR investigation published from database inception until December 2022. Collected data covered study design, participant characteristics, FDCR task design, and whether each study provided evidence that might potentially help develop susceptibility, diagnostic, response, prognostic, predictive, or severity biomarkers for 1 or more addictive disorders. FINDINGS: There were 415 FDCR studies published between 1998 and 2022. Most focused on nicotine (122 [29.6%]), alcohol (120 [29.2%]), or cocaine (46 [11.1%]), and most used visual cues (354 [85.3%]). Together, these studies recruited 19 311 participants, including 13 812 individuals with past or current substance use disorders. Most studies could potentially support biomarker development, including diagnostic (143 [32.7%]), treatment response (141 [32.3%]), severity (84 [19.2%]), prognostic (30 [6.9%]), predictive (25 [5.7%]), monitoring (12 [2.7%]), and susceptibility (2 [0.5%]) biomarkers. A total of 155 interventional studies used FDCR, mostly to investigate pharmacological (67 [43.2%]) or cognitive/behavioral (51 [32.9%]) interventions; 141 studies used FDCR as a response measure, of which 125 (88.7%) reported significant interventional FDCR alterations; and 25 studies used FDCR as an intervention outcome predictor, with 24 (96%) finding significant associations between FDCR markers and treatment outcomes. CONCLUSIONS AND RELEVANCE: Based on this systematic review and the proposed biomarker development framework, there is a pathway for the development and regulatory qualification of FDCR-based biomarkers of addiction and recovery. Further validation could support the use of FDCR-derived measures, potentially accelerating treatment development and improving diagnostic, prognostic, and predictive clinical judgments.
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- 2024
40. Identifying predictors of translocation success in rare plant species
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Bellis, Joe, Osazuwa‐Peters, Oyomoare, Maschinski, Joyce, Keir, Matthew J, Parsons, Elliott W, Kaye, Thomas N, Kunz, Michael, Possley, Jennifer, Menges, Eric, Smith, Stacy A, Roth, Daniela, Brewer, Debbie, Brumback, William, Lange, James J, Niederer, Christal, Turner‐Skoff, Jessica B, Bontrager, Megan, Braham, Richard, Coppoletta, Michelle, Holl, Karen D, Williamson, Paula, Bell, Timothy, Jonas, Jayne L, McEachern, Kathryn, Robertson, Kathy L, Birnbaum, Sandra J, Dattilo, Adam, Dollard, John J, Fant, Jeremie, Kishida, Wendy, Lesica, Peter, Link, Steven O, Pavlovic, Noel B, Poole, Jackie, Reemts, Charlotte M, Stiling, Peter, Taylor, David D, Titus, Jonathan H, Titus, Priscilla J, Adkins, Edith D, Chambers, Timothy, Paschke, Mark W, Heineman, Katherine D, and Albrecht, Matthew A
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Climate Change Impacts and Adaptation ,Ecological Applications ,Biological Sciences ,Ecology ,Environmental Sciences ,Life on Land ,Conservation of Natural Resources ,Plants ,Reproduction ,Seeds ,Ecosystem ,endangered species ,population restoration ,reintroduction ,seedling recruitment ,species recovery ,threatened species ,especie amenazada ,especie en peligro ,reclutamiento de plántulas ,recuperación de especie ,reintroducción ,restauración poblacional ,出苗 ,受威胁物种 ,濒危物种 ,物种恢复 ,种群恢复 ,重引入 ,Agricultural and Veterinary Sciences ,Zoology ,Environmental management - Abstract
The fundamental goal of a rare plant translocation is to create self-sustaining populations with the evolutionary resilience to persist in the long term. Yet, most plant translocation syntheses focus on a few factors influencing short-term benchmarks of success (e.g., survival and reproduction). Short-term benchmarks can be misleading when trying to infer future growth and viability because the factors that promote establishment may differ from those required for long-term persistence. We assembled a large (n = 275) and broadly representative data set of well-documented and monitored (7.9 years on average) at-risk plant translocations to identify the most important site attributes, management techniques, and species' traits for six life-cycle benchmarks and population metrics of translocation success. We used the random forest algorithm to quantify the relative importance of 29 predictor variables for each metric of success. Drivers of translocation outcomes varied across time frames and success metrics. Management techniques had the greatest relative influence on the attainment of life-cycle benchmarks and short-term population trends, whereas site attributes and species' traits were more important for population persistence and long-term trends. Specifically, large founder sizes increased the potential for reproduction and recruitment into the next generation, whereas declining habitat quality and the outplanting of species with low seed production led to increased extinction risks and a reduction in potential reproductive output in the long-term, respectively. We also detected novel interactions between some of the most important drivers, such as an increased probability of next-generation recruitment in species with greater seed production rates, but only when coupled with large founder sizes. Because most significant barriers to plant translocation success can be overcome by improving techniques or resolving site-level issues through early intervention and management, we suggest that by combining long-term monitoring with adaptive management, translocation programs can enhance the prospects of achieving long-term success.
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- 2024
41. Whole genome‐wide sequence analysis of long‐lived families (Long‐Life Family Study) identifies MTUS2 gene associated with late‐onset Alzheimer's disease
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Xicota, Laura, Cosentino, Stephanie, Vardarajan, Badri, Mayeux, Richard, Perls, Thomas T, Andersen, Stacy L, Zmuda, Joseph M, Thyagarajan, Bharat, Yashin, Anatoli, Wojczynski, Mary K, Krinsky‐McHale, Sharon, Handen, Benjamin L, Christian, Bradley T, Head, Elizabeth, Mapstone, Mark E, Schupf, Nicole, Lee, Joseph H, Barral, Sandra, Study, the Long‐Life Family, Abner, Erin, Adams, Perrie M, Aguirre, Alyssa, Albert, Marilyn S, Albin, Roger L, Allen, Mariet, Alvarez, Lisa, Andrews, Howard, Apostolova, Liana G, Arnold, Steven E, Asthana, Sanjay, Atwood, Craig S, Ayres, Gayle, Barber, Robert C, Barnes, Lisa L, Bartlett, Jackie, Beach, Thomas G, Becker, James T, Beecham, Gary W, Benchek, Penelope, Bennett, David A, Bertelson, John, Biber, Sarah A, Bird, Thomas D, Blacker, Deborah, Boeve, Bradley F, Bowen, James D, Boxer, Adam, Brewer, James B, Burke, James R, Burns, Jeffrey M, Bush, William S, Buxbaum, Joseph D, Byrd, Goldie, Cantwell, Laura B, Cao, Chuanhai, Carlsson, Cynthia M, Carrasquillo, Minerva M, Chan, Kwun C, Chasse, Scott, Chen, Yen‐Chi, Chesselet, Marie‐Francoise, Chin, Nathaniel A, Chui, Helena C, Chung, Jaeyoon, Craft, Suzanne, Crane, Paul K, Cranney, Marissa, Cruchaga, Carlos, Cuccaro, Michael L, Culhane, Jessica, Cullum, C Munro, Darby, Eveleen, Davis, Barbara, De Jager, Philip L, DeCarli, Charles, DeToledo, John C, Dickson, Dennis W, Dobbins, Nic, Duara, Ranjan, Ertekin‐Taner, Nilufer, Evans, Denis A, Faber, Kelley M, Fairchild, Thomas J, Fallin, Daniele, Fallon, Kenneth B, Fardo, David W, Farlow, Martin R, Farrell, John, Farrer, Lindsay A, Fernandez‐Hernandez, Victoria, Foroud, Tatiana M, Frosch, Matthew P, Galasko, Douglas R, Gamboa, Adriana, Gauthreaux, Kathryn M, Gefen, Tamar, Geschwind, Daniel H, Ghetti, Bernardino, and Gilbert, John R
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Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Acquired Cognitive Impairment ,Neurodegenerative ,Brain Disorders ,Dementia ,Alzheimer's Disease ,Human Genome ,Biotechnology ,Aging ,Genetics ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Humans ,Alzheimer Disease ,Amyloid beta-Peptides ,Genetic Predisposition to Disease ,Genome-Wide Association Study ,Microtubule-Associated Proteins ,Polymorphism ,Single Nucleotide ,Sequence Analysis ,genetic risk ,late-onset Alzheimer's disease ,microtubule protein ,MTUS2 gene ,whole genome sequence ,Long‐Life Family Study ,Alzheimer's Disease Genetic Consortium ,Alzheimer's Biomarkers Consortium‐Down Syndrome ,late‐onset Alzheimer's disease ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionLate-onset Alzheimer's disease (LOAD) has a strong genetic component. Participants in Long-Life Family Study (LLFS) exhibit delayed onset of dementia, offering a unique opportunity to investigate LOAD genetics.MethodsWe conducted a whole genome sequence analysis of 3475 LLFS members. Genetic associations were examined in six independent studies (N = 14,260) with a wide range of LOAD risk. Association analysis in a sub-sample of the LLFS cohort (N = 1739) evaluated the association of LOAD variants with beta amyloid (Aβ) levels.ResultsWe identified several single nucleotide polymorphisms (SNPs) in tight linkage disequilibrium within the MTUS2 gene associated with LOAD (rs73154407, p = 7.6 × 10-9). Association of MTUS2 variants with LOAD was observed in the five independent studies and was significantly stronger within high levels of Aβ42/40 ratio compared to lower amyloid.DiscussionMTUS2 encodes a microtubule associated protein implicated in the development and function of the nervous system, making it a plausible candidate to investigate LOAD biology.HighlightsLong-Life Family Study (LLFS) families may harbor late onset Alzheimer's dementia (LOAD) variants. LLFS whole genome sequence analysis identified MTUS2 gene variants associated with LOAD. The observed LLFS variants generalized to cohorts with wide range of LOAD risk. The association of MTUS2 with LOAD was stronger within high levels of beta amyloid. Our results provide evidence for MTUS2 gene as a novel LOAD candidate locus.
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- 2024
42. Herbal Medicines for the Treatment of Active Ulcerative Colitis: A Systematic Review and Meta-Analysis.
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Iyengar, Preetha, Godoy-Brewer, Gala, Maniyar, Isha, White, Jacob, Maas, Laura, Parian, Alyssa, and Limketkai, Berkeley
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complementary therapies ,dietary supplements ,herbal medicines ,integrative medicine ,phytotherapy ,plant extracts ,ulcerative colitis ,Humans ,Colitis ,Ulcerative ,Plants ,Medicinal ,Plant Extracts ,Combined Modality Therapy ,Commerce - Abstract
Herbal medicines are used by patients with IBD despite limited evidence. We present a systematic review and meta-analysis of randomized controlled trials (RCTs) investigating treatment with herbal medicines in active ulcerative colitis (UC). A search query designed by a library informationist was used to identify potential articles for inclusion. Articles were screened and data were extracted by at least two investigators. Outcomes of interest included clinical response, clinical remission, endoscopic response, endoscopic remission, and safety. We identified 28 RCTs for 18 herbs. In pooled analyses, when compared with placebo, clinical response rates were significantly higher for Indigo naturalis (IN) (RR 3.70, 95% CI 1.97-6.95), but not for Curcuma longa (CL) (RR 1.60, 95% CI 0.99-2.58) or Andrographis paniculata (AP) (RR 0.95, 95% CI 0.71-1.26). There was a significantly higher rate of clinical remission for CL (RR 2.58, 95% CI 1.18-5.63), but not for AP (RR 1.31, 95% CI 0.86-2.01). Higher rates of endoscopic response (RR 1.56, 95% CI 1.08-2.26) and remission (RR 19.37, 95% CI 2.71-138.42) were significant for CL. CL has evidence supporting its use as an adjuvant therapy in active UC. Research with larger scale and well-designed RCTs, manufacturing regulations, and education are needed.
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- 2024
43. IL-10 constrains sphingolipid metabolism to limit inflammation.
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Flavell, Richard, York, Autumn, Skadow, Mathias, Oh, Joonseok, Qu, Rihao, Zhou, Quan, Hsieh, Wei-Yuan, Mowel, Walter, Brewer, J, Kaffe, Eleanna, Williams, Kevin, Kluger, Yuval, Smale, Stephen, Crawford, Jason, and Bensinger, Steven
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Animals ,Humans ,Mice ,Ceramides ,Fatty Acids ,Unsaturated ,Homeostasis ,Immunity ,Innate ,Inflammation ,Interleukin-10 ,Proto-Oncogene Proteins c-rel ,Sphingolipids - Abstract
Interleukin-10 (IL-10) is a key anti-inflammatory cytokine that can limit immune cell activation and cytokine production in innate immune cell types1. Loss of IL-10 signalling results in life-threatening inflammatory bowel disease in humans and mice-however, the exact mechanism by which IL-10 signalling subdues inflammation remains unclear2-5. Here we find that increased saturated very long chain (VLC) ceramides are critical for the heightened inflammatory gene expression that is a hallmark of IL-10 deficiency. Accordingly, genetic deletion of ceramide synthase 2 (encoded by Cers2), the enzyme responsible for VLC ceramide production, limited the exacerbated inflammatory gene expression programme associated with IL-10 deficiency both in vitro and in vivo. The accumulation of saturated VLC ceramides was regulated by a decrease in metabolic flux through the de novo mono-unsaturated fatty acid synthesis pathway. Restoring mono-unsaturated fatty acid availability to cells deficient in IL-10 signalling limited saturated VLC ceramide production and the associated inflammation. Mechanistically, we find that persistent inflammation mediated by VLC ceramides is largely dependent on sustained activity of REL, an immuno-modulatory transcription factor. Together, these data indicate that an IL-10-driven fatty acid desaturation programme rewires VLC ceramide accumulation and aberrant activation of REL. These studies support the idea that fatty acid homeostasis in innate immune cells serves as a key regulatory node to control pathologic inflammation and suggests that metabolic correction of VLC homeostasis could be an important strategy to normalize dysregulated inflammation caused by the absence of IL-10.
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- 2024
44. 'I Don't Know Exactly What That Means to Do Check-Ups': Understanding and Experiences of Primary Care among Resettled Young Adult Refugees
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Sarah E Brewer, Enas Alsharea, and Lah Say Wah
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Young adult refugees have suboptimal primary care use, including having a regular provider and engaging with a regular source of care for primary and preventive healthcare needs. Our purpose was to understand how young adult refugees (ages 18-29 years) resettled to the United States understand and experience primary care. We conducted 23 semi-structured interviews with young adult refugees and explored their ideas about and experiences of key characteristics of primary care. Emergent themes were synthesized. Young adult refugees reported a lack of an understanding of the idea of primary care. However, they also described the lack of accepted key components of primary care, such as being the first contact and providing continuity, coordination and comprehensiveness. The importance of developing an ability to ask questions, get answers and feel empowered was a facilitator of primary care successes. Young refugees lack access to healthcare that exemplifies quality primary care. Improving understanding of the primary care model and its value as well as increasing access and ease of engagement could improve primary care engagement for young adult refugees.
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- 2024
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45. The Voices on Vax Campaign: Lessons Learned from Engaging Youth to Promote COVID Vaccination
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Powell, Terrinieka W., Forr, Amanda, Johnson, Sydney, Clinton, Taylor, Gaither, James, Brewer, Janesse, Dudley, Matthew Z., Holifield, Joni, Wilson, Paige, Benson, Lori Rose, Harr, Lindsey, Salmon, Daniel A., and Mendelson, Tamar
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- 2024
46. How much do LGBTQ+ Filipinos Perceive Media as Threatening? First Steps in the Development of the Perceived Media Threat Scale
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Shabahang, Reza, Brewer, Mick B., Reyes, Marc Eric S., Pacquing, Ma. Criselda T., Buvár, Ágnes, Aruguete, Mara S., Orosz, Gábor, and Zsila, Ágnes
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- 2024
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47. Using Q-Methodology to Evaluate Student Perceptions of Online Anatomy in the Time of COVID-19
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Jessica Saini, Danielle Brewer-Deluce, Noori Akhtar-Danesh, Anthony N. Saraco, Ilana Bayer, Courtney Pitt, and Bruce Wainman
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Pursuant to pedagogical changes necessitated by the COVID-19 pandemic, this study was designed to determine which aspects of an online anatomy course students most preferred and most disliked using Q-methodology. Data were collected in fall 2020 and winter 2021, and 166 student responses were analyzed via by-person factor analysis. Three distinct subgroups were identified: Group 1 (n=66) reported being comfortable with the technology skills required for studying anatomy online; Group 2 (n=50) reported dissatisfaction with several elements of course delivery, including evaluations, laboratory assignments, and the amount of lecture content, believing that they were essentially "teaching [themselves]"; Group 3 (n=29) was characterized by being happy with tutorial activities and the guidance received from teaching assistants. Common to all groups was the preference for physical rather than virtual specimens and for faculty-made practice questions as opposed to the overwhelming number of online specimens available for review. There was an overall positive attitude shift among students regarding online delivery across semesters. Given ongoing uncertainty surrounding the pandemic, these findings provide important considerations for future potential online/blended classes on anatomy education.
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- 2023
48. Publication of Medical Student Summer Research: A Multi-institutional Analysis
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Tumin, Dmitry, Long-Mills, Em, Becton, Maelee, Brewer, Kori L., Cunningham, Karlene, and Eldridge, David L.
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- 2024
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49. Martensite Formation and Dynamic Recrystallization in Cold Sprayed SS304L
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Roper, Christopher M., Jacob Williamson, C., An, Ke, and Brewer, Luke N.
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- 2024
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50. Development of a Novel Patient-Reported Outcome Measure to Assess Symptoms and Impacts of Androgen Deprivation Therapy for Advanced Prostate Cancer
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Ross, Ashley, Brewer, Kelsie, Hudgens, Stacie, Brown, Bruce, Fallick, Mark, de Paauw-Holt, Simon, Arondekar, Bhakti, Clegg, Jennifer, and Hunsche, Elke
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- 2024
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