26 results on '"Żamojć K"'
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2. Dihydroxycoumarins as highly selective fluorescent probes for the fast detection of 4-hydroxy-TEMPO in aqueous solution
- Author
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Żamojć, K., primary, Zdrowowicz, M., additional, Wiczk, W., additional, Jacewicz, D., additional, and Chmurzyński, L., additional
- Published
- 2015
- Full Text
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3. Insight into the intercalation of N-substituted acridine-9-amines into DNA based on spectroscopic and calorimetric analysis.
- Author
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Żamojć K, Milaș D, Grabowska O, Wyrzykowski D, Mańkowska M, and Krzymiński K
- Abstract
The study delves into the binding properties of acridine-9-amine and its selected, mainly N-substituted derivatives (A9As), with calf thymus deoxyribonucleic acid (CT-DNA). This investigation, conducted using UV-Vis spectrophotometry, steady-state fluorescence spectroscopy and isothermal titration calorimetry, provides insights into the relationship between their structure and activity. The absorption spectra of the A9As exhibited a slight red shift and significant hypochromic effects, while the fluorescence emission intensities decreased in the presence of CT-DNA. These results suggest that all fluorescent substrates intercalate into the double helix of native DNA to varying degrees. The binding constants for the A9As/CT-DNA complexes (log(K
A ) were determined using various techniques in the range from 2.59 to 5.50). The thermodynamic parameters of A9As binding to DNA were obtained from ITC measurements (ΔG from - 7.51 to - 6.75 kcal·mol-1 , ΔH from - 11.58 to - 3.83 kcal·mol-1 , and TΔS from - 4.83 to 3.68 kcal·mol-1 ) and indicated that the formation of all the investigated A9As-DNA complexes is an enthalpy-driven process. The study also discusses the influence of the emitters' structure and electronic properties of substituents on intercalation efficiency. This knowledge serves as a guide for further research and offers directions for functionalising new acridines as potential reagents. It also provides the latest information on the ability of intercalation to DNA, which can be instrumental in studies on the mechanism of binding small aromatic molecules to DNA and can potentially contribute to new anticancer drug designs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)- Published
- 2024
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4. Exploring the Impact of Subtle Differences in the Chemical Structure of 1-Alkylsulfates and 1-Alkylsulfonates on Their Interactions with Human Serum Albumin.
- Author
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Grabowska O, Singh A, Żamojć K, Samsonov SA, and Wyrzykowski D
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- Humans, Binding Sites, Calorimetry, Molecular Dynamics Simulation, Alkanesulfonates chemistry, Spectrometry, Fluorescence, Molecular Structure, Serum Albumin, Human chemistry, Serum Albumin, Human metabolism, Protein Binding, Surface-Active Agents chemistry, Thermodynamics
- Abstract
The objective of this study was to examine the interactions between anionic surfactants, specifically 1-alkylsulfonates (KXS) and 1-alkylsulfates (SXS) ions, with human serum albumin (HSA). A combination of experimental techniques, including isothermal titration calorimetry (ITC), steady-state fluorescence spectroscopy (SF), and molecular dynamics-based approaches was employed to gain a comprehensive understanding of these processes. It has been demonstrated that the subtle variations in the charge distribution on the anionic surfactant headgroups have a significant impact on the number of binding sites, the stoichiometry of the resulting complexes, and the strength of the interactions between the surfactants and the protein. Additionally, we established that the affinity of the investigated ligands to specific regions on the protein surface is governed by both the charge of the surfactant headgroup and the length of the aliphatic hydrocarbon chain. In summary, the findings highlight the crucial role of charge distribution on surfactant functional groups in the binding mode and the thermodynamic stability of surfactant-protein complexes.
- Published
- 2024
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5. Elucidation of binding mechanisms of bovine serum albumin and 1-alkylsulfonates with different hydrophobic chain lengths.
- Author
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Grabowska O, Samsonov SA, Kogut-Günthel MM, Żamojć K, and Wyrzykowski D
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- Animals, Cattle, Binding Sites, Molecular Dynamics Simulation, Ligands, Alkanesulfonates chemistry, Thermodynamics, Spectrometry, Fluorescence, Serum Albumin, Bovine chemistry, Serum Albumin, Bovine metabolism, Hydrophobic and Hydrophilic Interactions, Protein Binding
- Abstract
In this article, the binding interactions between bovine serum albumin (BSA) and three 1-alkylsulfonates, namely sodium 1-dodecanesulfonate, sodium 1-decanesulfonate, and sodium 1-octanesulfonate, have been thoroughly investigated. The study employed various experimental techniques such as isothermal titration calorimetry (ITC), steady-state fluorescence spectroscopy (SF), circular dichroism spectroscopy (CD), and molecular dynamics-based simulations. The objective was to understand the influence of the alkyl chain length of the investigated ligands on several aspects, including the strength of the interaction, the stoichiometry of the resulting complexes, the number of BSA binding sites, and the underlying mechanisms of binding. Notably, the study also demonstrated that sodium dodecyl sulfate (S12S) can serve as an effective site marker for BSA when studying ligands with similar structural and topological features. These findings may have significant implications for enhancing our understanding of the interactions between small amphiphilic molecules and proteins., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
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- 2024
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6. Implications of albumin in cell culture media on the biological action of vanadates(V).
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Grabowska O, Zdrowowicz M, Milaș D, Żamojć K, Chmur K, Tesmar A, Kapica M, Chmurzyński L, and Wyrzykowski D
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- Humans, Male, Vanadium pharmacology, Vanadium metabolism, Serum Albumin, Bovine, Cell Culture Techniques, Vanadates pharmacology, Vanadates chemistry, Prostatic Neoplasms
- Abstract
In this article, the implications of binding competition of vanadates(V) with dodecyl sulfates for bovine serum albumin on cytotoxicity of vanadium(V) species against prostate cancer cells have been investigated. The pH- and SDS-dependent vanadate(V)-BSA interactions were observed. At pH 5, there is only one site capable of binding ten vanadates(V) ions (logK
(ITC)1 = 4.96 ± 0.06; ΔH(ITC)1 = -1.04 ± 0.03 kcal mol-1 ), whereas at pH 7 two distinctive binding sites on protein were found, saturated with two and seven V(V) ions, respectively (logK(ITC)1 = 6.11 ± 0.06; ΔH(ITC)1 = 0.78 ± 0.12 kcal mol-1 ; logK(ITC)2 = 4.80 ± 0.02; ΔH(ITC)2 = - 4.95 ± 0.14 kcal mol-1 ). SDS influences the stoichiometry and the stability of the resulting V(V)-BSA complexes. Finally, the cytotoxicity of vanadates(V) against prostate cancer cells (PC3 line) was examined in the presence and absence of SDS in the culture medium. In the case of a 24-h incubation with 100 μM vanadate(V), a ca. 20 % reduction in viability of PC3 cells was observed in the presence of SDS. However, in other considered cases (various concentrations and time of incubation) SDS does not affect the dose-dependent action of vanadates(V) on the investigated prostate cancer cells., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2023
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7. Insights into the interaction of human serum albumin with ionic liquids - Thermodynamic, spectroscopic and molecular modelling studies.
- Author
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Kowalska D, Dołżonek J, Żamojć K, Samsonov SA, Maszota-Zieleniak M, Makowska J, Stepnowski P, Białk-Bielińska A, and Wyrzykowski D
- Subjects
- Humans, Ligands, Binding Sites, Circular Dichroism, Molecular Docking Simulation, Spectrometry, Fluorescence, Thermodynamics, Protein Binding, Serum Albumin, Human chemistry, Ionic Liquids chemistry
- Abstract
Human serum albumin (HSA) effectively binds different types of low-molecular-weight compounds and thus enables their distribution in living organisms. Recently, it has been reported that the protein-ligand interactions play a crucial role in bioaccumulation processes and provide an important sorption phase, especially for ionogenic compounds. Therefore, the binding interactions of such compounds with proteins are the subject of an ongoing interest in environmental and life sciences. In this paper, the influence of some counter-ions, namely [B(CN)
4 ]- and [C(CN)3 ]- on the affinity of the [IM1-12]+ towards HSA has been investigated and discussed based on experimental methods (isothermal titration calorimetry and steady-state fluorescence spectroscopy) and molecular dynamics-based computational approaches. Furthermore, the thermal stability of the resulting HSA/ligand complexes was assessed using DSC and CD spectroscopy. As an outcome of the work, it has been ascertained that the protein is able to bind simultaneously the ligands under study but in different regions of HSA. Thus, the presence in the system of [IM1-12]+ does not disturb the binding of [C(CN)3 ]- and [B(CN)4 ]- . The presented results provide important information on the presence of globular proteins and some ionogenic compounds in the distribution and bioaccumulation of ILs in the environment and living organisms., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Piotr Stepnowski reports financial support was provided by National Science Centre Poland. Sergey Samsonov reports financial support was provided by National Science Centre Poland., (Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2023
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8. Investigation of hexacyanoferrate(II)/(III) charge-dependent interactions with bovine and human serum albumins.
- Author
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Grabowska O, Samsonov SA, Chmurzyński L, Wyrzykowski D, and Żamojć K
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- Cattle, Animals, Humans, Ferrocyanides, Binding Sites, Spectrometry, Fluorescence, Thermodynamics, Protein Binding, Molecular Docking Simulation, Circular Dichroism, Serum Albumin, Human metabolism, Serum Albumin, Bovine chemistry
- Abstract
In the present paper, the binding interactions of highly negative-charged ions, namely hexacyanoferrates(II/III), i.e. [Fe(CN)
6 ]4- and [Fe(CN)6 ]3- with bovine and human serum albumins (BSA and HSA, respectively) have been studied for the first time in an aqueous solution (10 mM cacodylate buffer of pH 7.0) using steady-state fluorescence spectroscopy, isothermal titration calorimetry, and CD spectroscopy supported by molecular dynamics-based computational approaches. The Stern-Volmer equation as well as its modifications suggested that hexacyanoferrates(II/III) effectively quenched the intrinsic fluorescence of the albumins through a static mechanism. The proteins under study possess only one binding site on the surface capable of binding one mole of hexacyanoferrates(II/III) ions per one mole of albumin (HSA or BSA). The formation of albumin complexes is an enthalpy-driven process (|ΔHITC | > |TΔSITC |). The strength of the interactions depends mainly on the type of albumin, and changes as follows: BSA-K3 [Fe(CN)6 ] ∼ BSA-K4 [Fe(CN)6 ] > HSA-K3 [Fe(CN)6 ] ∼ HSA-K4 [Fe(CN)6 ]. Finally, potential binding sites of bovine and human serum albumins have been investigated and discussed based on a competitive fluorescence displacement assay (with warfarin and ibuprofen as site markers) and molecular dynamics simulations., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier B.V. All rights reserved.)- Published
- 2023
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9. On the Effect of pH, Temperature, and Surfactant Structure on Bovine Serum Albumin-Cationic/Anionic/Nonionic Surfactants Interactions in Cacodylate Buffer-Fluorescence Quenching Studies Supported by UV Spectrophotometry and CD Spectroscopy.
- Author
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Żamojć K, Wyrzykowski D, and Chmurzyński L
- Subjects
- Cetrimonium chemistry, Circular Dichroism, Fluorescence, Hydrogen-Ion Concentration, Hydrophobic and Hydrophilic Interactions, Polyethylene Glycols chemistry, Sodium Dodecyl Sulfate chemistry, Spectrometry, Fluorescence methods, Temperature, Thermodynamics, Ultraviolet Rays, Anions chemistry, Cacodylic Acid chemistry, Cations chemistry, Serum Albumin, Bovine chemistry, Surface-Active Agents chemistry
- Abstract
Due to the fact that surfactant molecules are known to alter the structure (and consequently the function) of a protein, protein-surfactant interactions are very important in the biological, pharmaceutical, and cosmetic industries. Although there are numerous studies on the interactions of albumins with surfactants, the investigations are often performed at fixed environmental conditions and limited to separate surface-active agents and consequently do not present an appropriate comparison between their different types and structures. In the present paper, the interactions between selected cationic, anionic, and nonionic surfactants, namely hexadecylpyridinium chloride (CPC), hexadecyltrimethylammonium bromide (CTAB), sodium dodecyl sulfate (SDS), polyethylene glycol sorbitan monolaurate, monopalmitate, and monooleate (TWEEN 20, TWEEN 40, and TWEEN 80, respectively) with bovine serum albumin (BSA) were studied qualitatively and quantitatively in an aqueous solution (10 mM cacodylate buffer; pH 5.0 and 7.0) by steady-state fluorescence spectroscopy supported by UV spectrophotometry and CD spectroscopy. Since in the case of all studied systems, the fluorescence intensity of BSA decreased regularly and significantly under the action of the surfactants added, the fluorescence quenching mechanism was analyzed thoroughly with the use of the Stern-Volmer equation (and its modification) and attributed to the formation of BSA-surfactant complexes. The binding efficiency and mode of interactions were evaluated among others by the determination, comparison, and discussion of the values of binding (association) constants of the newly formed complexes and the corresponding thermodynamic parameters (Δ G , Δ H , Δ S ). Furthermore, the influence of the structure of the chosen surfactants (charge of hydrophilic head and length of hydrophobic chain) as well as different environmental conditions (pH, temperature) on the binding mode and the strength of the interaction has been investigated and elucidated.
- Published
- 2021
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10. Effect of Tetraphenylborate on Physicochemical Properties of Bovine Serum Albumin.
- Author
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Grabowska O, Kogut MM, Żamojć K, Samsonov SA, Makowska J, Tesmar A, Chmur K, Wyrzykowski D, and Chmurzyński L
- Subjects
- Animals, Calorimetry, Calorimetry, Differential Scanning, Cattle, Circular Dichroism, Spectrometry, Fluorescence, Serum Albumin, Bovine chemistry, Tetraphenylborate chemistry
- Abstract
The binding interactions of bovine serum albumin (BSA) with tetraphenylborate ions ([B(Ph)
4 ]- ) have been investigated by a set of experimental methods (isothermal titration calorimetry, steady-state fluorescence spectroscopy, differential scanning calorimetry and circular dichroism spectroscopy) and molecular dynamics-based computational approaches. Two sets of structurally distinctive binding sites in BSA were found under the experimental conditions (10 mM cacodylate buffer, pH 7, 298.15 K). The obtained results, supported by the competitive interactions experiments of SDS with [B(Ph)4 ]- for BSA, enabled us to find the potential binding sites in BSA. The first site is located in the subdomain I A of the protein and binds two [B(Ph)4 ]- ions (log K(ITC)1 = 7.09 ± 0.10; Δ G(ITC)1 = -9.67 ± 0.14 kcal mol-1 ; Δ H(ITC)1 = -3.14 ± 0.12 kcal mol-1 ; TΔ S(ITC)1 = -6.53 kcal mol-1 ), whereas the second site is localized in the subdomain III A and binds five ions (log K(ITC)2 = 5.39 ± 0.06; Δ G(ITC)2 = -7.35 ± 0.09 kcal mol-1 ; Δ H(ITC)2 = 4.00 ± 0.14 kcal mol-1 ; TΔ S(ITC)2 = 11.3 kcal mol-1 ). The formation of the {[B(Ph)4 ]- }-BSA complex results in an increase in the thermal stability of the alfa-helical content, correlating with the saturation of the particular BSA binding sites, thus hindering its thermal unfolding.- Published
- 2021
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11. Fluorescence Quenching Studies on the Interactions between Chosen Fluoroquinolones and Selected Stable TEMPO and PROXYL Nitroxides.
- Author
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Żamojć K, Bylińska I, Wiczk W, and Chmurzyński L
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- Fluorescence, Kinetics, Spectrometry, Fluorescence methods, Temperature, Water, Cyclic N-Oxides chemistry, Fluoroquinolones chemistry
- Abstract
The influence of the stable 2,2,6,6-tetramethylpiperidinyl- N -oxyl (TEMPO) nitroxide and its six C4-substituted derivatives, as well as two C3-substituted analogues of 2,2,5,5-tetramethylpyrrolidynyl- N -oxyl (PROXYL) nitroxide on the chosen fluoroquinolone antibiotics (marbofloxacin, ciprofloxacin, danofloxacin, norfloxacin, enrofloxacin, levofloxacin and ofloxacin), has been examined in aqueous solutions by UV absorption as well as steady-state and time-resolved fluorescence spectroscopies. The mechanism of fluorescence quenching has been specified and proved to be purely dynamic (collisional) for all the studied systems, which was additionally confirmed by temperature dependence experiments. Moreover, the selected quenching parameters-that is, Stern-Volmer quenching constants and bimolecular quenching rate constants-have been determined and explained. The possibility of electron transfer was ruled out, and the quenching was found to be diffusion-limited, being a result of the increase in non-radiative processes. Furthermore, as the chosen nitroxides affected the fluorescence of fluoroquinolone antibiotics in different ways, an influence of the structure and the type of substituents in the molecules of both fluoroquinolones and stable radicals on the quenching efficiency has been determined and discussed. Finally, the impact of the solvent's polarity on the values of bimolecular quenching rate constants has been explained. The significance of the project comes from many applications of nitroxides in chemistry, biology and industry.
- Published
- 2021
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12. The Product of Matrix Metalloproteinase Cleavage of Doxorubicin Conjugate for Anticancer Drug Delivery: Calorimetric, Spectroscopic, and Molecular Dynamics Studies on Peptide-Doxorubicin Binding to DNA.
- Author
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Butowska K, Żamojć K, Kogut M, Kozak W, Wyrzykowski D, Wiczk W, Czub J, Piosik J, and Rak J
- Subjects
- Delayed-Action Preparations chemistry, Humans, DNA chemistry, Doxorubicin chemistry, Matrix Metalloproteinases chemistry, Molecular Dynamics Simulation, Peptides chemistry
- Abstract
Matrix metalloproteinases (MMPs) are extracellular matrix degradation factors, promoting cancer progression. Hence, they could provide an enzyme-assisted delivery of doxorubicin (DOX) in cancer treatment. In the current study, the intercalation process of DOX and tetrapeptide-DOX, the product of the MMPs' cleavage of carrier-linked DOX, into dsDNA was investigated using stationary and time-resolved fluorescence spectroscopy, UV-Vis spectrophotometry and isothermal titration calorimetry (ITC). The molecular dynamics (MD) simulations on the same tetrapeptide-DOX
… DNA and DOX… DNA systems were also performed. The undertaken studies indicate that DOX and tetrapeptide-DOX can effectively bond with dsDNA through the intercalation mode; however, tetrapeptide-DOX forms less stable complexes than free DOX. Moreover, the obtained results demonstrate that the differences in DNA affinity of both forms of DOX can be attributed to different intercalation modes. Tetrapeptide-DOX shows a preference to intercalate into DNA through the major groove, whereas DOX does it through the minor one. In summary, we can conclude that the tetrapeptide-DOX intercalation to DNA is significant and that even the lack of non-specific proteases releasing DOX from the tetrapeptide conjugate, the presence of which is suggested by the literature for the efficient release of DOX, should not prevent the cytostatic action of the anthracycline.- Published
- 2020
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13. A Pentapeptide with Tyrosine Moiety as Fluorescent Chemosensor for Selective Nanomolar-Level Detection of Copper(II) Ions.
- Author
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Żamojć K, Kamrowski D, Zdrowowicz M, Wyrzykowski D, Wiczk W, Chmurzyński L, and Makowska J
- Subjects
- Cations chemistry, Chromatography, Liquid, Copper chemistry, Fluorescence, Hydrogen-Ion Concentration, Magnetic Resonance Spectroscopy, Mass Spectrometry, Metals chemistry, Spectrometry, Fluorescence, Copper analysis, Fluorescent Dyes chemistry, Peptides chemistry, Tyrosine chemistry
- Abstract
Herein, we have investigated principally with the use of UV and fluorescence (steady-state and time-resolved) spectroscopy the interactions between selected pentapeptides with tyrosine residue (EYHHQ, EHYHQ, EHHQY, and KYHHE) and various metal ions (Cu
2+ , Mn2+ , Co2+ , Ni2+ , Zn2+ , Cr3+ , Cd2+ , Ag+ , Pb2+ , Sr2+ , Ba2+ , Ca2+ , Mg2+ , Al3+ , Fe2+ , and Ga3+ ) in order to establish the relationship between the position of a tyrosine residue in the peptide sequence and the metal ion-binding properties. Among the peptides studied, EHYHQ was evaluated as an efficient and selective ligand for developing a chemosensor for the detection of copper(II) ions. While significant fluorescence emission quenching was observed for that peptide in the presence of Cu2+ cations, other metal cations used at the same and at considerably higher concentrations caused a negligible change of the fluorescence emission spectrum, indicating a high selectivity of EHYHQ for Cu2+ ions. Under optimum conditions, fluorescence intensity was inversely proportional to the concentration of Cu2+ ions. The limit of detection of Cu2+ ions with the use of EHYHQ was determined at the level of 26.6 nM. The binding stoichiometry of the complexes of the studied peptides with Cu2+ ions was evaluated spectrophotometrically and fluorimetrically (as in the case of EHYHQ confirmed by mass spectrometry) and found to be 1:2 (Cu2+ -peptide) for all the investigated systems. Furthermore, the stability constant ( K ) values of these complexes were determined. The reversibility of the proposed Cu2+ ions sensor was confirmed, the pH range where the sensor acts was determined, while its analytical performance was compared with some other reported recently fluorescent sensors. The mechanism of the interactions between EHYHQ and Cu2+ was proposed on the basis of NMR spectroscopy investigations.- Published
- 2020
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14. Dihydroxy-Substituted Coumarins as Fluorescent Probes for Nanomolar-Level Detection of the 4-Amino-TEMPO Spin Label.
- Author
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Żamojć K, Zdrowowicz M, Hać A, Witwicki M, Rudnicki-Velasquez PB, Wyrzykowski D, Wiczk W, and Chmurzyński L
- Subjects
- Coumarins pharmacology, Cyclic N-Oxides isolation & purification, Electron Spin Resonance Spectroscopy, Fluorescence, Fluorescent Dyes chemistry, Free Radical Scavengers chemistry, Nitrogen Oxides isolation & purification, Spectrometry, Fluorescence, Spin Labels, Coumarins chemistry, Cyclic N-Oxides chemistry, Nitrogen Oxides chemistry, Oxidative Stress
- Abstract
This paper reports on dihydroxycoumarins as fluorescent probes suitable for the detection and determination of the nitroxide radical, namely 4-amino-TEMPO. Since 4-amino-TEMPO is used as a spin label for the detection of various radicals and damage caused by these species, its determination under physiological conditions might help us to understand the mechanism of the oxidative stress. Among different coumarins studied, only dihydroxy-substituted derivatives show high sensitivity, specificity, and selectivity for the nitroxide radical. In this assay, dihydroxy-substituted coumarins under the action of 4-amino-TEMPO show a very fast and significant increase in fluorescence intensity and lifetime. Among them 6,7-dihydroxycoumarin (esculetin) exhibits the strongest fluorescence enhancement (up to 40 times), with an estimated limit of detection equal to 16.7 nM-a significantly lower value when compared with UV-Vis or electron paramagnetic resonance (EPR) spectroscopy. The method is characterized by an easy procedure of sample preparation and very short time of analysis. The mechanism of the interaction between 6,7-dihydroxycoumarin and 4-amino-TEMPO has been examined with the use of a series of complementary techniques, such as steady-state and time-resolved fluorescence spectroscopy, UV-Vis spectroscopy, electron paramagnetic resonance spectroscopy, potentiometric titration, and high-performance liquid chromatography. It has been proven that the only route of the reaction in the system studied is a proton transfer from the molecule of esculetin to the amino group of the nitroxide. Biological studies performed on prostate cancer cells, breast cancer cells, and normal skin fibroblasts revealed significant anticancer properties of 6,7-dihydroxycoumarin, which caused a considerable decrease in the viability and number of cancer cells, and affected their morphology, contrary to normal fibroblasts. Furthermore, the experiment performed on prostate cancer cells showed that fluorescence emission of esculetin is closely related to intracellular pH-the higher pH, the higher observed fluorescence intensity (in accordance with a chemical experiment). On the other hand, the studies performed in different pH levels revealed that when pH of the solution increases, the observed fluorescence intensity enhancement under the action of 4-amino-TEMPO decreases (better sensing properties of esculetin towards the nitroxide in lower pH).
- Published
- 2019
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15. On the use of acridinium indicators for the chemiluminescent determination of the total antioxidant capacity of dietary supplements.
- Author
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Krzymiński KK, Roshal AD, Rudnicki-Velasquez PB, and Żamojć K
- Subjects
- Kinetics, Luminescence, Luminol chemistry, Acridines chemistry, Antioxidants chemistry, Dietary Supplements analysis, Luminescent Measurements methods, Succinimides chemistry
- Abstract
Acridinium salts, due to their chemiluminogenic properties, have found several applications in biomedical analysis as labels and indicators, where the assessment of emission intensity is used for the end-point detection. This work presents the use of chemiluminescent indicators in the form of selected acridinium esters in order to determine the antioxidant properties of exemplary formulations, namely quercetin, vitamin C and the dietary supplement, Apiextract. The principle of measurements is based on a change in the kinetics of emission decay derived from the acridinium cations in alkaline solutions of hydrogen peroxide in the presence of an antioxidant (the analyte). The proposed system makes a beneficial alternative to related methods, which mostly rely on the assessment of emission efficiency and use the luminometric standard luminol - due to superior parameters of acridinium chemiluminescence, among others - high temporary emission efficiency. The features of the proposed method are manifested by a shorter time period of analysis and lower background signals associated with the environmental influences, as compared to typical approaches. The chromatographic (RP-HPLC) analyses of the substrates and products generated during chemiluminogenic oxidation of acridinium cations under assay conditions are also presented., (© 2019 John Wiley & Sons, Ltd.)
- Published
- 2019
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16. Copper(II) complexation by fragment of central part of FBP28 protein from Mus musculus.
- Author
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Makowska J, Żamojć K, Wyrzykowski D, Wiczk W, and Chmurzyński L
- Subjects
- Animals, Calorimetry, Copper chemistry, Mice, Protein Binding, Spectrometry, Fluorescence, Spectrophotometry, Ultraviolet, Thermodynamics, Transcriptional Elongation Factors chemistry, Copper metabolism, Transcriptional Elongation Factors metabolism
- Abstract
Steady-state and time-resolved fluorescence spectroscopy, UV spectrophotometry and isothermal titration calorimetry techniques were used to study the coordinating properties of the 17aa peptide fragment (D17) derived from the central part of the mouse formin binding protein (FBP28 with the PDB code: 1E0L) towards Cu
2+ ions. All the measurements were run in the 2-(N-morpholino)ethanesulfonic acid buffer (20 mM, pH 6.0). Under experimental conditions the formation of the 1:1 complex of Cu2+ ions with D17 is an entropy-driven process. Cu2+ ions cause the static fluorescence quenching of the peptide studied through the formation of a non-fluorescent complex. Furthermore, the thermal stability of D17 was discussed based on the results obtained from differential scanning fluorimetry (nanoDSF) data., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2018
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17. Method for detection of hydrogen peroxide in HT22 cells.
- Author
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Jacewicz D, Siedlecka-Kroplewska K, Drzeżdżon J, Piotrowska A, Wyrzykowski D, Tesmar A, Żamojć K, and Chmurzyński L
- Subjects
- Animals, Cell Line, Hippocampus metabolism, Hydrogen Peroxide chemistry, Mice, Oxidative Stress, Biosensing Techniques methods, Hydrogen Peroxide analysis
- Abstract
We have proposed a new method which can be applied in assessing the intracellular production of hydrogen peroxide. Using this assay we have examined the hydrogen peroxide generation during the L-glutamate induced oxidative stress in the HT22 hippocampal cells. The detection of hydrogen peroxide is based on two crucial reagents cis-[Cr(C
2 O4 )(pm)(OH2 )2 ]+ (pm denotes pyridoxamine) and 2-ketobutyrate. The results obtained indicate that the presented method can be a promising tool to detect hydrogen peroxide in biological samples, particularly in cellular experimental models.- Published
- 2017
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18. The development of 1,3-diphenylisobenzofuran as a highly selective probe for the detection and quantitative determination of hydrogen peroxide.
- Author
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Żamojć K, Zdrowowicz M, Rudnicki-Velasquez PB, Krzymiński K, Zaborowski B, Niedziałkowski P, Jacewicz D, and Chmurzyński L
- Subjects
- Chromatography, High Pressure Liquid, Hydrogen Peroxide chemistry, Limit of Detection, Reactive Nitrogen Species chemistry, Benzofurans chemistry, Fluorescent Dyes chemistry, Hydrogen Peroxide analysis
- Abstract
1,3-Diphenylisobenzofuran (DPBF) has been developed as a selective probe for the detection and quantitative determination of hydrogen peroxide in samples containing different reactive nitrogen and oxygen species (RNOS). DPBF is a fluorescent probe which, for almost 20 years, was believed to react in a highly specific manner toward some reactive oxygen species (ROS) such as singlet oxygen and hydroxy, alkyloxy or alkylperoxy radicals. Under the action of these individuals DPBF has been rapidly transformed to 1,2-dibenzoylbenzene (DBB). In order to check if DPBF can act as a unique indicator of the total amount of different RNOS, as well as oxidative stress caused by an overproduction of these individuals, a series of experiments was carried out, in which DPBF reacted with peroxynitrite anion, superoxide anion, hydrogen peroxide, hypochlorite anion, and anions commonly present under biological conditions, namely nitrite and nitrate. In all cases, except for hydrogen peroxide, the product of the reaction is DBB. Only under the action of H
2 O2 9-hydroxyanthracen-10(9H)-one (oxanthrone) is formed. This product has been identified with the use of fluorescence spectroscopy, NMR spectroscopy, high performance liquid chromatography coupled with mass spectrometry, infrared spectroscopy, elemental analysis, and cyclic voltammetry (CV). A linear relationship was found between a decrease in the fluorescence intensity of DPBF and the concentration of hydrogen peroxide in the range of concentrations of 0.196-3.941 mM. DPBF responds to hydrogen peroxide in a very specific way with the limits of detection and quantitation of 88 and 122.8 μM, respectively. The kinetics of the reaction between DBBF and H2 O2 was also studied.- Published
- 2017
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19. Probing the binding of Cu(2+) ions to a fragment of the Aβ(1-42) polypeptide using fluorescence spectroscopy, isothermal titration calorimetry and molecular dynamics simulations.
- Author
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Makowska J, Żamojć K, Wyrzykowski D, Żmudzińska W, Uber D, Wierzbicka M, Wiczk W, and Chmurzyński L
- Subjects
- Amino Acid Sequence, Calorimetry, Cations, Divalent chemistry, Humans, Models, Molecular, Molecular Dynamics Simulation, Protein Binding, Protein Structure, Tertiary, Spectrometry, Fluorescence, Thermodynamics, Amyloid beta-Peptides chemistry, Copper chemistry, Peptide Fragments chemistry
- Abstract
Steady-state and time-resolved fluorescence quenching measurements supported by isothermal titration calorimetry (ITC) and molecular dynamics simulations (MD), with the NMR-derived restraints, were used to investigate the interactions of Cu(2+) ions with a fragment of the Aβ(1-42) polypeptide, Aβ(5-16) with the following sequence: Ac-Arg-His-Asp-Ser-Gly-Tyr-Glu-Val-His-His-Gln-Lys-NH2, denoted as HZ1. The studies presented in this paper, when compared with our previous results (Makowska et al., Spectrochim. Acta A 153: 451-456), show that the affinity of the peptide to metal ions is conformation-dependent. All the measurements were carried out in 20mM 2-(N-morpholino)ethanesulfonic acid (MES) buffer solution, pH6.0. The Stern-Volmer equations, along with spectroscopic observations, were used to determine the quenching and binding parameters. The obtained results unequivocally suggest that Cu(2+) ions quench the fluorescence of HZ1 only through a static quenching mechanism, in contrast to the fragment from the N-terminal part of the FPB28 protein, with sequence Ac-Tyr-Lys-Thr-Ala-Asp-Gly-Lys-Thr-Tyr- NH2 (D9) and its derivative with a single point mutation: Ac-Tyr-Lys-Thr-Ala-Asn-Gly-Lys-Thr-Tyr- NH2 (D9_M), where dynamic quenching occurred. The thermodynamic parameters (ΔITCH, ΔITCS) for the interactions between Cu(2+) ions and the HZ1 peptide were determined from the calorimetric data. The conditional thermodynamic parameters suggest that, under the experimental conditions, the formation of the Cu(2+)-HZ1 complex is both an enthalpy and entropy driven process., (Copyright © 2016 Elsevier B.V. All rights reserved.)
- Published
- 2016
- Full Text
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20. Fluorescent Probes Used for Detection of Hydrogen Peroxide under Biological Conditions.
- Author
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Żamojć K, Zdrowowicz M, Jacewicz D, Wyrzykowski D, and Chmurzyński L
- Subjects
- Hydrogen Peroxide metabolism, Molecular Structure, Fluorescent Dyes chemistry, Hydrogen Peroxide analysis
- Abstract
Hydrogen peroxide is a well-established precursor of reactive oxygen and nitrogen species that are known to contribute to oxidative stress-the crucial factor responsible for the course of a wide range of phy-sicochemical processes as well as the genesis of various diseases, such as cancer and neurodegenerative disorders. Thus, the development of sensitive and selective methods for the detection and quantitative determination of hydrogen peroxide is of great importance in monitoring the in vivo production of that species and elucidating its biological functions. This review highlights the progress that has been made in the development of fluorescent and luminescent probes (excluding nanoparticles) employed to monitor hydrogen peroxide under biological conditions. Attention was focused on probes developed in the past 10 years.
- Published
- 2016
- Full Text
- View/download PDF
21. Binding of Cu(II) ions to peptides studied by fluorescence spectroscopy and isothermal titration calorimetry.
- Author
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Makowska J, Żamojć K, Wyrzykowski D, Uber D, Wierzbicka M, Wiczk W, and Chmurzyński L
- Subjects
- Ions, Solutions, Spectrophotometry, Ultraviolet, Thermodynamics, Calorimetry methods, Copper metabolism, Peptides metabolism, Spectrometry, Fluorescence methods
- Abstract
Steady-state and time-resolved fluorescence quenching measurements supported by Isothermal Titration Calorimetry (ITC) were used to study the interactions of Cu(2+) with four peptides. Two of them were taken from the N-terminal part of the FBP28 protein (formin binding protein) WW domain: Tyr-Lys-Thr-Ala-Asp-Gly-Lys-Thr-Tyr-NH2 (D9) and its mutant Tyr-Lys-Thr-Ala-Asn-Gly-Lys-Thr-Tyr-NH2 (D9_M) as well as two mutated peptides from the B3 domain of the immunoglobulin binding protein G derived from Streptococcus: Asp-Val-Ala-Thr-Tyr-Thr-NH2 (J1) and Glu-Val-Ala-Thr-Tyr-Thr-NH2 (J2). The measurements were carried out at 298.15K in 20mM 2-(N-morpholino)ethanesulfonic acid (MES) buffer solution with a pH of 6. The fluorescence of all peptides was quenched by Cu(2+) ions. The stoichiometry, conditional stability constants and thermodynamic parameters for the interactions of the Cu(2+) ions with D9 and D9_M were determined from the calorimetric data. The values of the conditional stability constants were additionally determined from fluorescence quenching measurements and compared with those obtained from calorimetric studies. There was a good correlation between data obtained from the two techniques. On the other hand, the studies revealed that J1 and J2 do not exhibit an affinity towards metal ions. The obtained results prove that fluorescence quenching experiments may be successfully used in order to determine stability constants of complexes with fluorescent ligands. Finally, based on the obtained results, the coordinating properties of the peptides towards the Cu(2+) ions are discussed., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
- Full Text
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22. Fluorescent and Luminescent Probes for Monitoring Hydroxyl Radical under Biological Conditions.
- Author
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Żamojć K, Zdrowowicz M, Jacewicz D, Wyrzykowski D, and Chmurzyński L
- Subjects
- Fluorescent Dyes chemistry, Hydroxyl Radical analysis, Luminescent Agents chemistry
- Abstract
Detection and quantitative determination in biological media of the hydroxyl radical are of great importance due to the role this radical plays in many physiological and pathological processes. This review focuses on the progress that has been made in recent years in the development of fluorescent and luminescent probes employed to monitor hydroxyl radical concentrations under biological conditions.
- Published
- 2016
- Full Text
- View/download PDF
23. Physicochemical properties of ternary oxovanadium(IV) complexes with oxydiacetate and 1,10-phenanthroline or 2,2'-bipyridine. Cytoprotective activity in hippocampal neuronal HT22 cells.
- Author
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Wyrzykowski D, Inkielewicz-Stępniak I, Pranczk J, Żamojć K, Zięba P, Tesmar A, Jacewicz D, Ossowski T, and Chmurzyński L
- Subjects
- 2,2'-Dipyridyl chemistry, Acetates chemistry, Animals, Cell Line, Cell Survival drug effects, Drug Evaluation, Preclinical, Drug Stability, Free Radical Scavengers chemistry, Hippocampus cytology, Hydrogen-Ion Concentration, Mice, Neuroprotective Agents chemistry, Phenanthrolines chemistry, Solutions, Superoxides chemistry, Free Radical Scavengers pharmacology, Neuroprotective Agents pharmacology, Vanadates chemistry
- Abstract
The aim of this work was to find a relationship between physicochemical properties of the oxovanadium(IV) complexes, namely [VO(ODA)(H2O)2], [VO(ODA)(phen)]·1.5H2O and [VO(ODA)(bipy)]·2H2O (ODA = oxydiacetate) as well as [VO(H2O)5](2+), and their biological activity. A potentiometric titration method has been used to characterize the stability of the complexes in aqueous solutions. Furthermore, the reactivity of the complexes towards superoxide free radicals was assessed by employing the NBT assay as well as a cyclic voltammetry (CV) technique. Additionally, the investigations of the antioxidant properties of the complexes were complemented by studying their reactivity towards organic radicals (the ABTS and DPPH tests). Finally, the biological properties of the complexes were investigated in relation to their cytoprotective activity against the oxidative damage generated exogenously by using hydrogen peroxide in the Hippocampal neuronal cell line HT22 (the MTT and LDH tests). The obtained results showed that all the compounds under study display antioxidant properties but a concentration-depended protective effect against the oxidative damage was found for [VO(ODA)(bipy)]·2H2O only.
- Published
- 2015
- Full Text
- View/download PDF
24. Fluorescence quenching of 7-amino-4-methylcoumarin by different TEMPO derivatives.
- Author
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Żamojć K, Wiczk W, Zaborowski B, Jacewicz D, and Chmurzyński L
- Subjects
- Cyclic N-Oxides pharmacology, Fluorescence, Kinetics, Spectrometry, Fluorescence, Coumarins chemistry, Cyclic N-Oxides chemistry
- Abstract
The fluorescence quenching of 7-amino-4-methylcoumarin by different TEMPO derivatives was studied in aqueous solutions with the use of steady-state, time-resolved fluorescence spectroscopy as well as UV-VIS absorption spectroscopy methods. In order to distinguish each TEMPO derivative from the others and to understand the mechanism of quenching, the absorption and fluorescence emission spectra as well as decays of the fluorescence of 7-amino-4-methylcoumarin were registered as a function of each TEMPO derivative concentration. There were no deviations from a linearity in the Stern-Volmer plots (determined from both, steady-state and time-resolved measurements). The fluorescence quenching mechanism was found to be entirely collisional, what was additionally confirmed by the registration of Stern-Volmer plots at 5 temperatures ranging from 15 to 55°C. Based on theoretical calculations of molecular radii and ionization potentials of all TEMPO derivatives the mechanism of electron transfer was rejected. The fluorescence quenching which was being studied seems to be diffusion-limited and caused by the increase of non-radiative processes, such as an internal conversion and an intersystem crossing. The Stern-Volmer quenching constants and bimolecular quenching constants were determined at the room temperature for all TEMPO derivatives studied. Among all TEMPO derivatives studied TEMPO-4-amino-4-carboxylic acid (TOAC) was found to be the most effective quencher of 7-amino-4-methylcoumarin fluorescence (kq for TOAC was approximately 1.5 higher than kq for other TEMPO compounds studied). The findings demonstrate the possibility of developing an analytical method for the quantitative determination of TOAC, which incorporation into membrane proteins may provide a direct detection of peptide backbone dynamics., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
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25. Fluorescence quenching of fluoroquinolone antibiotics by 4-hydroxy-TEMPO in aqueous solution.
- Author
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Żamojć K, Wiczk W, Zaborowski B, Makowski M, Pranczk J, Jacewicz D, and Chmurzyński L
- Subjects
- Fluorescence, Models, Molecular, Spectrometry, Fluorescence, Anti-Bacterial Agents chemistry, Cyclic N-Oxides chemistry, Fluoroquinolones chemistry, Hydroxylamine chemistry
- Abstract
The fluorescence quenching of norfloxacin, danofloxacin, enrofloxacin and levofloxacin, belonging to a group of fluoroquinolone antibiotics, by 4-hydroxy-TEMPO was studied in aqueous solutions with the use of steady-state, time-resolved fluorescence spectroscopy as well as UV-VIS absorption spectroscopy methods. In order to understand the mechanism of quenching the absorption and fluorescence emission spectra of all fluoroquinolone antibiotics studied as well as decreases of their fluorescence were registered as a function of the 4-hydroxy-TEMPO concentration. No deviations from a linearity in the Stern-Volmer plots (determined from both, steady-state and time-resolved measurements) were observed. The fluorescence quenching mechanism was proved to be totally dynamic, what was additionally confirmed by the registration of Stern-Volmer plots at 5 temperatures ranging from 15 to 55°C. On the basis of theoretical calculations of fluoroquinolones' molecular radii and ionization potentials the mechanism of electron transfer was rejected. It seems that the fluorescence quenching is diffusion-limited and is caused by the increase of nonradiative processes, such as internal conversion or intersystem crossing. The Stern-Volmer quenching constants and bimolecular quenching constants were determined at the room temperature for all fluoroquinolone antibiotics studied., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
26. Analysis of fluorescence quenching of coumarin derivatives by 4-hydroxy-TEMPO in aqueous solution.
- Author
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Żamojć K, Wiczk W, Zaborowski B, Jacewicz D, and Chmurzyński L
- Subjects
- Models, Molecular, Molecular Structure, Spectrometry, Fluorescence, Spectrophotometry, Ultraviolet, Coumarins analysis, Coumarins chemistry, Cyclic N-Oxides chemistry, Fluorescence, Free Radical Scavengers chemistry, Hydroxylamine chemistry, Water chemistry
- Abstract
The fluorescence quenching of different coumarin derivatives (7-hydroxy-4-methylcoumarin, 5,7-dimethoxycoumarin, 7-amino-4-methyl-3-coumarinylacetic acid, 7-ethoxy-4-methylcoumarin, 7-methoxycoumarin, 7-hydroxycoumarin, 7-hydroxy-4-methyl-3-coumarinylacetic acid and 7-amino-4-methylcoumarin) by 4-hydroxy-TEMPO in aqueous solutions at the room temperature was studied with the use of UV-Vis absorption spectroscopy as well as a steady-state and time-resolved fluorescence spectroscopy. In order to understand the mechanism of quenching the absorption and fluorescence emission spectra of all coumarins along with fluorescence decays were recorded under the action of 4-hydroxy-TEMPO. The Stern-Volmer plots (both from time-averaged and time-resolved measurements) displayed no positive (upward) deviation from a linearity. The fluorescence quenching mechanism was found to be entirely dynamic, what was additionally confirmed by the registration of Stern-Volmer plots at different temperatures. The Stern-Volmer quenching constants and bimolecular quenching rate constants were obtained for all coumarins studied at the room temperature. The findings demonstrate the possibility of developing an analytical method for the quantitative determination of the free radicals' scavenger, 4-hydroxy-TEMPO.
- Published
- 2014
- Full Text
- View/download PDF
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