962 results on '"Šimić, Goran"'
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2. Energy efficiency as a driver of the circular economy and carbon neutrality in selected countries of Southern Europe: a soft computing approach
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Ramčilović Jesih, Alma, Šimić, Goran, Konatar, Ljubiša, Brljak, Zoran, and Šprajc, Polona
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- 2024
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3. Facilitating circularity in city governance in the Republic of Serbia: a novel approach to modeling of energy efficiency big data mining
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Radovanović, Mirjana, Filipović, Sanja, and Šimić, Goran
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- 2024
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4. Energy security of the European Union and corruption in Central Asia as the main challenges for the European sustainable energy future
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Vasić, Bojana, Pekić, Ivan, and Šimić, Goran
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- 2023
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5. Experimental Approach to Assessment of Safety Against Derailment of Freight Wagons
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Milković, Dragan, Simić, Goran, Radulović, Saša, Lučanin, Vojkan, Kostić, Aleksandra, Kacprzyk, Janusz, Series Editor, Gomide, Fernando, Advisory Editor, Kaynak, Okyay, Advisory Editor, Liu, Derong, Advisory Editor, Pedrycz, Witold, Advisory Editor, Polycarpou, Marios M., Advisory Editor, Rudas, Imre J., Advisory Editor, Wang, Jun, Advisory Editor, Mitrovic, Nenad, editor, Mladenovic, Goran, editor, and Mitrovic, Aleksandra, editor
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- 2023
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6. Prices of conventional and renewable energy as determinants of sustainable and secure energy development: regression model analysis
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Knez, Sandi, Šimić, Goran, Milovanović, Anica, Starikova, Sofia, and Županič, Franc Željko
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- 2022
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7. Using Redescription Mining to Relate Clinical and Biological Characteristics of Cognitively Impaired and Alzheimer's Disease Patients
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Mihelčić, Matej, Šimić, Goran, Leko, Mirjana Babić, Lavrač, Nada, Džeroski, Sašo, and Šmuc, Tomislav
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Quantitative Biology - Quantitative Methods ,Computer Science - Artificial Intelligence ,Quantitative Biology - Neurons and Cognition - Abstract
We used redescription mining to find interpretable rules revealing associations between those determinants that provide insights about the Alzheimer's disease (AD). We extended the CLUS-RM redescription mining algorithm to a constraint-based redescription mining (CBRM) setting, which enables several modes of targeted exploration of specific, user-constrained associations. Redescription mining enabled finding specific constructs of clinical and biological attributes that describe many groups of subjects of different size, homogeneity and levels of cognitive impairment. We confirmed some previously known findings. However, in some instances, as with the attributes: testosterone, the imaging attribute Spatial Pattern of Abnormalities for Recognition of Early AD, as well as the levels of leptin and angiopoietin-2 in plasma, we corroborated previously debatable findings or provided additional information about these variables and their association with AD pathogenesis. Applying redescription mining on ADNI data resulted with the discovery of one largely unknown attribute: the Pregnancy-Associated Protein-A (PAPP-A), which we found highly associated with cognitive impairment in AD. Statistically significant correlations (p <= 0.01) were found between PAPP-A and various different clinical tests. The high importance of this finding lies in the fact that PAPP-A is a metalloproteinase, known to cleave insulin-like growth factor binding proteins. Since it also shares similar substrates with A Disintegrin and the Metalloproteinase family of enzymes that act as {\alpha}-secretase to physiologically cleave amyloid precursor protein (APP) in the non-amyloidogenic pathway, it could be directly involved in the metabolism of APP very early during the disease course. Therefore, further studies should investigate the role of PAPP-A in the development of AD more thoroughly.
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- 2017
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8. Further validation of the association between MAPT haplotype-tagging polymorphisms and Alzheimer's disease: neuropsychological tests, cerebrospinal fluid biomarkers, and APOE genotype.
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Leko, Mirjana Babić, Popovački, Ena Španić, Willumsen, Nanet, Perković, Matea Nikolac, Pleić, Nikolina, Zubčić, Klara, Horvat, Lea Langer, Vogrinc, Željka, Boban, Marina, Borovečki, Fran, Zemunik, Tatijana, de Silva, Rohan, and Šimić, Goran
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DISEASE risk factors ,TAU proteins ,ALZHEIMER'S disease ,GENETIC polymorphisms ,CEREBROSPINAL fluid examination - Abstract
Introduction: Genetic studies have shown that variants in the microtubuleassociated protein tau (MAPT) gene, which encodes tau protein, can increase the risk for Alzheimer's disease (AD). Additionally, two haplotypes of the MAPT gene (H1 and H2) are associated with various neurodegenerative disorders, including AD. This study aimed to test the association of MAPT haplotypes (H1 and H2) and MAPT haplotype-tagging polymorphisms (rs1467967, rs242557, rs3785883, rs2471738, del-In9, rs7521) with AD. Methods: The study included 964 individuals: 113 with AD, 53 with mild cognitive impairment (MCI), 54 with other dementias, and 744 healthy controls. Results: The results showed that individuals carrying the A allele in the MAPT rs1467967 polymorphism, the GG genotype in the MAPT rs7521 polymorphism, and the G allele in the MAPT rs242557 polymorphism had worse performance on various neuropsychological tests. Carriers of the C allele in MAPT rs2471738 polymorphism and CC homozygotes also showed worse performance on neuropsychological tests and pathological levels of several cerebrospinal fluid (CSF) biomarkers. However, T allele carriers in the MAPT rs2471738 polymorphism were more represented among patients with dementia and apolipoprotein E (APOE) 4 carriers. Carriers of the H2 MAPT haplotype had worse performance on various neuropsychological tests, consistent with our previous study, which associated the H2 MAPT haplotype with pathological levels of CSF AD biomarkers. Regarding the MAPT rs3785883 polymorphism, further research is needed since both the AA and GG genotypes were associated with pathological levels of CSF and plasma AD biomarkers. Discussion: In conclusion, further genetic studies are needed to elucidate the role of MAPT haplotypes and MAPT haplotype-tagging polymorphisms in the development of AD. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Histological characterization and development of mesial surface sulci in the human brain at 13–15 gestational weeks through high‐resolution histology
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Verma, Richa, primary, Jayakumar, Jaikishan, additional, Folkerth, Rebecca, additional, Manger, Paul R., additional, Bota, Mihail, additional, Majumder, Moitrayee, additional, Pandurangan, Karthika, additional, Savoia, Stephen, additional, Karthik, Srinivasa, additional, Kumarasami, Ramdayalan, additional, Joseph, Jayaraj, additional, Rohini, G., additional, Vasudevan, Sudha, additional, Srinivasan, Chitra, additional, Lata, S., additional, Kumar, E. Harish, additional, Rangasami, Rajeswaran, additional, Kumutha, Jayaraman, additional, Suresh, S., additional, Šimić, Goran, additional, Mitra, Partha P, additional, and Sivaprakasam, Mohanasankar, additional
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- 2024
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10. Increased NLRP1 mRNA and Protein Expression Suggests Inflammasome Activation in the Dorsolateral Prefrontal and Medial Orbitofrontal Cortex in Schizophrenia
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Španić Popovački, Ena, primary, Vogrinc, Dora, additional, Fuller, Heidi R., additional, Langer Horvat, Lea, additional, Mayer, Davor, additional, Kopić, Janja, additional, Pintarić, Klara, additional, Babić Leko, Mirjana, additional, Pravica, Mihaela, additional, Krsnik, Željka, additional, Marčinko, Darko, additional, Šagud, Marina, additional, Hof, Patrick R., additional, Mladinov, Mihovil, additional, and Šimić, Goran, additional
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- 2024
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11. To Believe or Not to Believe: Current History Textbooks in Bosnia and Herzegovina
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Šimić, Goran, Ognjenović, Gorana, editor, and Jozelić, Jasna, editor
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- 2020
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12. Patient-specific Alzheimer-like pathology in trisomy 21 cerebral organoids reveals BACE2 as a gene dose-sensitive AD suppressor in human brain
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Alić, Ivan, Goh, Pollyanna A., Murray, Aoife, Portelius, Erik, Gkanatsiou, Eleni, Gough, Gillian, Mok, Kin Y., Koschut, David, Brunmeir, Reinhard, Yeap, Yee Jie, O’Brien, Niamh L., Groet, Jürgen, Shao, Xiaowei, Havlicek, Steven, Dunn, N. Ray, Kvartsberg, Hlin, Brinkmalm, Gunnar, Hithersay, Rosalyn, Startin, Carla, Hamburg, Sarah, Phillips, Margaret, Pervushin, Konstantin, Turmaine, Mark, Wallon, David, Rovelet-Lecrux, Anne, Soininen, Hilkka, Volpi, Emanuela, Martin, Joanne E., Foo, Jia Nee, Becker, David L., Rostagno, Agueda, Ghiso, Jorge, Krsnik, Željka, Šimić, Goran, Kostović, Ivica, Mitrečić, Dinko, Francis, Paul T., Blennow, Kaj, Strydom, Andre, Hardy, John, Zetterberg, Henrik, and Nižetić, Dean
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- 2021
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13. Fuzzy logic approach in energy security decision-making: “ESecFuzzy” software application
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Šimić, Goran, Radovanović, Mirjana, Filipović, Sanja, and Mirković Isaeva, Olga
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- 2021
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14. Effects of heterologous human tau protein expression in yeast models of proteotoxic stress response.
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Zubčić, Klara, Franić, Dina, Pravica, Mihaela, Hof, Patrick R., Šimić, Goran, and Boban, Mirta
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TAU proteins ,PROTEIN expression ,YEAST ,ALZHEIMER'S disease ,NEUROFIBRILLARY tangles - Abstract
Background: The primary histological characteristic of Alzheimer's disease is the presence of neurofibrillary tangles, which are large aggregates of tau protein. Aging is the primary risk factor for the development of Alzheimer's disease, however, the underlying causes of tau protein aggregation and toxicity are unclear. Aims: Here we investigated tau aggregation and toxicity under the conditions of compromised protein homeostasis. Methods: We used heterologous expression of human tau protein in the unicellular eukaryote yeast Saccharomyces cerevisiae with evolutionarily conserved protein quality control pathways and examined tau‐dependent toxicity and aggregation using growth assays, fluorescence microscopy, and a split luciferase‐based reporter NanoBiT. Results: Tau protein expressed in yeast under mild proteotoxic stress, or in mutants with impaired pathways for proteotoxic stress response, did not lead to synthetic toxicity or the formation of obvious aggregates. Chronologically old cells also did not develop observable tau aggregates. Our examination of tau oligomerization in living cells using NanoBiT reporter suggests that tau does not form significant levels of oligomers under basal conditions or under mild proteotoxic stress. Conclusion: Together our data suggest that human tau protein does not represent a major burden to the protein quality control system in yeast cells. When expressed in yeast Saccharomyces cerevisiae cell model under the conditions of compromised protein homeostasis, human tau protein does not form visible aggregates or result in toxicity. [ABSTRACT FROM AUTHOR]
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- 2024
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15. The Role of p53 in Alzheimer’s Disease: Impact on Tau Pathology
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Jembrek, Maja Jazvinšćak, Newberg, Katy, Šimić, Goran, Singh, Sarika, editor, and Joshi, Neeraj, editor
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- 2019
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16. Celebrating 37 years of dedication: Reflections on the past and looking toward the future
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Šimić, Goran, primary and Rodney, Gail M., additional
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- 2024
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17. Decision-making in sustainable energy transition in Southeastern Europe: probabilistic network-based model
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Hribar, Nena, Šimić, Goran, Vukadinović, Simonida, and Šprajc, Polona
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- 2021
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18. Alterations and interactions of subcortical modulatory systems in Alzheimer's disease
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Babić Leko, Mirjana, primary, Hof, Patrick R., additional, and Šimić, Goran, additional
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- 2021
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19. Total tau in cerebrospinal fluid detects treatment responders among spinal muscular atrophy types 1–3 patients treated with nusinersen.
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Šimić, Goran, Vukić, Vana, Babić, Marija, Banović, Maria, Berečić, Ivana, Španić, Ena, Zubčić, Klara, Golubić, Anja Tea, Barišić Kutija, Marija, Merkler Šorgić, Ana, Vogrinc, Željka, Lehman, Ivan, Hof, Patrick R., Sertić, Jadranka, and Barišić, Nina
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SPINAL muscular atrophy , *TAU proteins , *CEREBROSPINAL fluid , *ENZYME-linked immunosorbent assay , *MOTOR ability - Abstract
Aims: Considering the substantial variability in treatment response across patients with spinal muscular atrophy (SMA), reliable markers for monitoring response to therapy and predicting treatment responders need to be identified. The study aimed to determine if measured concentrations of disease biomarkers (total tau protein, neurofilament light chain, and S100B protein) correlate with the duration of nusinersen treatment and with scores obtained using functional scales for the assessment of motor abilities. Methods: A total of 30 subjects with SMA treated with nusinersen between 2017 and 2021 at the Department of Pediatrics, University Hospital Centre Zagreb, Croatia, were included in this study. Cerebrospinal fluid (CSF) samples were collected by lumbar puncture prior to intrathecal application of nusinersen. Protein concentrations in CSF samples were determined by enzyme‐linked immunosorbent assay in 26 subjects. The motor functions were assessed using functional motor scales. Results: The main finding was significantly decreased total tau correlating with the number of nusinersen doses and motor improvement in the first 18–24 months of treatment (in all SMA patients and SMA type 1 patients). Neurofilament light chain and S100B were not significantly changed after administration of nusinersen. Conclusions: The measurement of total tau concentration in CSF is a reliable index for monitoring the biomarker and clinical response to nusinersen therapy in patients with SMA. [ABSTRACT FROM AUTHOR]
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- 2024
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20. PARAMILITARY AND WAR CRIMES COMMITTED IN BOSNIA AND HERZEGOVINA / PARAVOJNE JEDINICE I RATNI ZLOČINI POČINJENI U BOSNI I HERCEGOVINI
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Šimić, Goran, primary and Ferhatović, Amila, additional
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- 2023
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21. The Right to Dignified Death: A Comparative Legal Discussion of Euthanasia and Assisted Termination of Life
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Michałkiewicz-Kądziela, Ewa, primary and Šimić, Goran, additional
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- 2023
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22. Coevolution in the timing of GABAergic and pyramidal neuron maturation in primates
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Charvet, Christine J., Šimić, Goran, Kostović, Ivica, Knezović, Vinka, Vukšić, Mario, Leko, Mirjana Babić, Takahashi, Emi, Sherwood, Chet C., Wolfe, Marnin D., and Finlay, Barbara L.
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- 2017
23. Molecular Biomarkers for the Diagnosis, Prognosis, and Pharmacodynamics of Spinal Muscular Atrophy
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Babić, Marija, primary, Banović, Maria, additional, Berečić, Ivana, additional, Banić, Tea, additional, Babić Leko, Mirjana, additional, Ulamec, Monika, additional, Junaković, Alisa, additional, Kopić, Janja, additional, Sertić, Jadranka, additional, Barišić, Nina, additional, and Šimić, Goran, additional
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- 2023
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24. Assessing the Responsibilities of the International Criminal Court in the Investigation of War Crimes in Ukraine
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Ablamskyi, Serhii, primary, Tchobo, Denakpon L.R., additional, Romaniuk, Vitalii, additional, Šimić, Goran, additional, and Ilchyshyn, Nadiya, additional
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- 2023
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25. Fetal development of the human amygdala.
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Mulc, Damir, Smilović, Dinko, Krsnik, Željka, Junaković‐Munjas, Alisa, Kopić, Janja, Kostović, Ivica, Šimić, Goran, and Vukšić, Mario
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The intricate development of the human amygdala involves a complex interplay of diverse processes, varying in speed and duration. In humans, transient cytoarchitectural structures deliquesce, leading to the formation of functionally distinct nuclei as a result of multiple interdependent developmental events. This study compares the amygdala's cytoarchitectural development in conjunction with specific antibody reactivity for neuronal, glial, neuropil, and radial glial fibers, synaptic, extracellular matrix, and myelin components in 39 fetal human brains. We recognized that the early fetal period, as a continuation of the embryonic period, is still dominated by relatively uniform histogenetic processes. The typical appearance of ovoid cell clusters in the lateral nucleus during midfetal period is most likely associated with the cell migration and axonal growth processes in the developing human brain. Notably, synaptic markers are firstly detected in the corticomedial group of nuclei, while immunoreactivity for the panaxonal neurofilament marker SMI 312 is found dorsally. The late fetal period is characterized by a protracted migration process evidenced by the presence of doublecortin and SOX‐2 immunoreactivity ventrally, in the prospective paralaminar nucleus, reinforced by vimentin immunoreactivity in the last remaining radial glial fibers. Nearing the term period, SMI 99 immunoreactivity indicates that perinatal myelination becomes prominent primarily along major axonal pathways, laying the foundation for more pronounced functional maturation. This study comprehensively elucidates the rate and sequence of maturational events in the amygdala, highlighting the key role of prenatal development in its behavioral, autonomic, and endocrine regulation, with subsequent implications for both normal functioning and psychiatric disorders. [ABSTRACT FROM AUTHOR]
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- 2024
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26. BOSNIA AND HERZEGOVINA: THE PERILS AND PITFALLS OF MEMORIALIZATION IN DIVIDED POST-CONFLICT SOCIETIES.
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Šimić, Goran
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MEMORIALIZATION ,TRANSITIONAL justice ,CRIMINAL law ,SYMBOLISM - Abstract
Copyright of SKEI - International Interdisciplinary Journal / Medunarodni Interdisciplinarni Casopis is the property of University Vitez, Bosnia & Herzegovina and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2024
27. Blood-brain barrier and innate immunity in the pathogenesis of Alzheimer's disease
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Šimić, Goran, primary, Španić, Ena, additional, Langer Horvat, Lea, additional, and Hof, Patrick R., additional
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- 2019
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28. Correction: Patient-specific Alzheimer-like pathology in trisomy 21 cerebral organoids reveals BACE2 as a gene dose-sensitive AD suppressor in human brain
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Alić, Ivan, Goh, Pollyanna A., Murray, Aoife, Portelius, Erik, Gkanatsiou, Eleni, Gough, Gillian, Mok, Kin Y., Koschut, David, Brunmeir, Reinhard, Yeap, Yee Jie, O’Brien, Niamh L., Groet, Jürgen, Shao, Xiaowei, Havlicek, Steven, Dunn, N. Ray, Kvartsberg, Hlin, Brinkmalm, Gunnar, Hithersay, Rosalyn, Startin, Carla, Hamburg, Sarah, Phillips, Margaret, Pervushin, Konstantin, Turmaine, Mark, Wallon, David, Rovelet-Lecrux, Anne, Soininen, Hilkka, Volpi, Emanuela, Martin, Joanne E., Foo, Jia Nee, Becker, David L., Rostagno, Agueda, Ghiso, Jorge, Krsnik, Željka, Šimić, Goran, Kostović, Ivica, Mitrečić, Dinko, Francis, Paul T., Blennow, Kaj, Strydom, Andre, Hardy, John, Zetterberg, Henrik, and Nižetić, Dean
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- 2021
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29. Cytokine and chemokine levels in the cerebrospinal fluid and plasma samples of mild cognitive impairment and Alzheimer's disease subjects
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Španić Popovački, Ena, Babić Leko, Mirjana, Brgić, Klara, Vogrinc, Željka, Boban, Marina, Klepac, Nataša, Borovečki, Fran, Šimić, Goran, Šimić, Goran, and Mimica, Ninoslav
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Alzheimer’s disease ,inflammation ,immune mediators ,cerebrospinal fluid, multiplex ELISA - Abstract
In addition to amyloid β and tau protein pathology, Alzheimer's disease (AD) is characterized by dysregulation of the inflammatory response. The main objective of this study was to find out how the concentrations of immune mediators (cytokines and chemokines) differ between AD, patients with mild cognitive impairment (MCI), and healthy controls (HC) in two different types of samples, cerebrospinal fluid (CSF) and plasma. We also wanted to determine the cytokine profile for each group. Using the Bio-Plex Pro Human Cytokine 48-Plex Screening Panel, we determined the levels of 35 cytokines in CSF and 47 in plasma samples. Twenty-nine AD, 35 MCI, and 40 HC CSF and 102 AD, 37 MCI, and 10 HC plasma samples were analyzed. In the plasma samples, only 4 cytokines differed significantly between the groups (CTACK, IL-12 (p40), IL-4, IL1Rα), whereas analysis of the CSF samples revealed significantly different levels of 15 immune mediators (IL-1β, IL-1α, IL-3, IL-4, IL-7, IL-16, IL-17A, IL-18, IFN-γ, GRO-α, MIP-1β, CTACK, TNF-α, IL-2Rα, IP-10). Most of the mediators whose levels differed significantly were increased in the AD group ; only IP-10 had the highest levels in the MCI group. CSF analysis showed that the AD group was characterized by a pro-inflammatory profile and a higher rate of an adaptive immune response. Higher levels of predominantly pro-inflammatory cytokines (IL-1β, IL-18, MIG, EOTAXIN, MIP-1α, MIP-1β, TNF-β) were associated with higher levels of cognitive deficits. This study has shown that measurement of immune mediators in CSF, but not in plasma, may be a good strategy to track the immune response during disease progression and could be a promising tool for evaluating potential future immune and anti-inflammatory interventions.
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- 2023
30. Novel non-transgenic tauopathy model induced by inoculation of human tau fibrils and tau oligomers into the rat entorhinal cortex
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Langer Horvat, Lea, Šimić, Goran, Šimić, Goran, and Mimica, Ninoslav
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Alzheimer’s disease ,cognition ,tau fibrils ,tau oligomers ,tauopathy rat model - Abstract
Emerging experimental evidence suggests that the spread of tau pathology in the brain in human neurodegenerative disorders reflects the propagation of misfolded tau along neuroanatomically connected brain regions, with the first changes seen in the brainstem and entorhinal cortex spreading trans-synaptically along specific pathways to other brain regions. Most of the in vivo spreading of tau has been shown in transgenic mouse models that overexpress mutated or wild-type human tau. The use of genetic models of familial Alzheimer's disease (AD) may not represent the complete picture of the disease in humans. Therefore, other types of animal models relevant to the sporadic form, which represents over 95 % of all AD cases, must be developed. In the study, we aimed to characterize possible pathological changes and the propagation of different forms of tau species in non-transgenic 3-4 months-old wild-type Wistar rats after a single unilateral injection of human tau oligomers and tau fibrils into the medial entorhinal cortex (mEC). We determined whether tau fibrils and tau oligomers would induce neurofibrillary changes and propagate like AD and whether this tau-related pathology would correlate with cognitive impairment. We injected human tau fibrils and tau oligomers stereotaxically into the mEC and examined the distribution of tau-related changes at different time points (4, 8, and 11 months post-injection) using antibodies AT8 for early phosphorylation and MC1 for aberrant conformation of tau. Colocalization was performed with the synaptophysin antibody to analyze whether inoculated tau proteins enter synapses and affect their decay. We observed that tau oligomers and tau fibrils exhibit different effects in terms of the ability to propagate tau-related changes. Both variants of inoculated tau proteins rapidly spread via anterograde axonal transport to the hippocampus and various parts of the neocortex, including the primary motor and somatosensory areas. Rats inoculated with human tau fibrils showed, as early as 4 months after inoculation, a spread of phosphorylated tau protein at the AT8 epitopes throughout the brain and faster propagation of neurofibrillary changes than with human tau oligomers. The severity of tau changes after inoculation of human tau oligomers and tau fibrils correlated with impairments in spatial working memory and cognition, as measured by the T-maze, novel object recognition, and object location tests. We concluded that this non-transgenic rat model of tauopathy, especially when using human tau fibrils, demonstrates rapidly developing pathologic alterations in neurons and synapses together with cognitive and behavioral changes through the anterograde and retrograde spreading of neurofibrillary degeneration. Therefore, it represents a promising novel model for experimental studies of primary and secondary tauopathies, especially AD.
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- 2023
31. Metals in Alzheimer’s Disease
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Babić Leko, Mirjana, primary, Langer Horvat, Lea, additional, Španić Popovački, Ena, additional, Zubčić, Klara, additional, Hof, Patrick R., additional, and Šimić, Goran, additional
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- 2023
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32. CSF Soluble TREM2 Concentrations Correlate With the Severity of Neurofibrillary Degeneration, Cognitive Impairment, and Inflammasome Activation in Alzheimer’s Disease
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Ena Španić Popovački, Mirjana Babić Leko, Lea Langer Horvat, Klara Brgić, Željka Vogrinc, Marina Boban, Nataša Klepac, Fran Borovečki, and Šimić Goran
- Abstract
People with specific TREM2 gene variants are more prone to develop Alzheimer's disease (AD). The TREM2 receptor regulates the number of myeloid cells, phagocytosis, and the inflammatory response via interacting with apolipoproteins and amyloid. Higher TREM2 expression has been found to protect against AD. When TREM2 activity increases, the activity of genes involved in the activation of microglia cells decreases. This can improve the efficiency of phagocytosis. When TREM2 is highly expressed and the inflammasome is activated, the results are not always congruent. Therefore, this study aimed to discover how sTREM2 levels in CSF and plasma samples relate to other indices of AD pathology. We examined 98 AD plasma samples, 35 plasma samples of subjects with mild cognitive impairment (MCI), 11 healthy controls (HC) plasma samples, as well as 155 AD CSF samples, 90 MCI CSF samples, and 50 HC CSF samples. CSF sTREM2 levels were higher in the AD group than in the MCI and HC groups, in contrast to plasma sTREM2. This shows that CSF sTREM2 levels could be used to distinguish between healthy and AD patients. CSF sTREM2 levels were significantly correlated with neurofibrillary changes, cognitive decline, and inflammasome activity in AD patients. While our findings are consistent with previous research, future studies will need to include more patients and employ standardized methodological approaches to add CSF sTREM2 to the list of biomarkers for AD.
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- 2023
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33. The Role of p53 in Alzheimer’s Disease: Impact on Tau Pathology
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Jembrek, Maja Jazvinšćak, primary, Newberg, Katy, additional, and Šimić, Goran, additional
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- 2018
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34. Soluble TREM2 Concentrations in the Cerebrospinal Fluid Correlate with the Severity of Neurofibrillary Degeneration, Cognitive Impairment, and Inflammasome Activation in Alzheimer's Disease.
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Španić Popovački, Ena, Babić Leko, Mirjana, Langer Horvat, Lea, Brgić, Klara, Vogrinc, Željka, Boban, Marina, Klepac, Nataša, Borovečki, Fran, and Šimić, Goran
- Subjects
ALZHEIMER'S disease ,CEREBROSPINAL fluid ,COGNITION disorders ,INFLAMMASOMES ,MILD cognitive impairment ,ENZYME-linked immunosorbent assay - Abstract
Background: Individuals with specific TREM2 gene variants that encode for a Triggering Receptor Expressed on Myeloid cells 2 have a higher prevalence of Alzheimer's disease (AD). By interacting with amyloid and apolipoproteins, the TREM2 receptor regulates the number of myeloid cells, phagocytosis, and the inflammatory response. Higher TREM2 expression has been suggested to protect against AD. However, it is extremely difficult to comprehend TREM2 signaling in the context of AD. Previous results are variable and show distinct effects on diverse pathological changes in AD, differences between soluble and membrane isoform signaling, and inconsistency between animal models and humans. In addition, the relationship between TREM2 and inflammasome activation pathways is not yet entirely understood. Objective: This study aimed to determine the relationship between soluble TREM2 (sTREM2) levels in cerebrospinal fluid (CSF) and plasma samples and other indicators of AD pathology. Methods: Using the Enzyme-Linked Immunosorbent Assay (ELISA), we analyzed 98 samples of AD plasma, 35 samples of plasma from individuals with mild cognitive impairment (MCI), and 11 samples of plasma from healthy controls (HC), as well as 155 samples of AD CSF, 90 samples of MCI CSF, and 50 samples of HC CSF. Results: CSF sTREM2 levels were significantly correlated with neurofibrillary degeneration, cognitive decline, and inflammasome activity in AD patients. In contrast to plasma sTREM2, CSF sTREM2 levels in the AD group were higher than those in the MCI and HC groups. Moreover, concentrations of sTREM2 in CSF were substantially higher in the MCI group than in the HC group, indicating that CSF sTREM2 levels could be used not only to distinguish between HC and AD patients but also as a biomarker to detect earlier changes in the MCI stage. Conclusions: The results indicate CSF sTREM2 levels reliably predict neurofibrillary degeneration, cognitive decline, and inflammasome activation, and also have a high diagnostic potential for distinguishing diseased from healthy individuals. To add sTREM2 to the list of required AD biomarkers, future studies will need to include a larger number of patients and utilize a standardized methodology. [ABSTRACT FROM AUTHOR]
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- 2023
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35. Gene expression profiling of the dorsolateral and medial orbitofrontal cortex in schizophrenia
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Mladinov Mihovil, Sedmak Goran, Fuller Heidi R., Babić Leko Mirjana, Mayer Davor, Kirincich Jason, Štajduhar Andrija, Borovečki Fran, Hof Patrick R., and Šimić Goran
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brain asymmetry ,dorsolateral prefrontal cortex ,gene expression ,orbitofrontal cortex ,schizophrenia ,transcriptomics ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Schizophrenia is a complex polygenic disorder of unknown etiology. Over 3,000 candidate genes associated with schizophrenia have been reported, most of which being mentioned only once. Alterations in cognitive processing - working memory, metacognition and mentalization - represent a core feature of schizophrenia, which indicates the involvement of the prefrontal cortex in the pathophysiology of this disorder. Hence we compared the gene expression in postmortem tissue from the left and right dorsolateral prefrontal cortex (DLPFC, Brodmann's area 46), and the medial part of the orbitofrontal cortex (MOFC, Brodmann's area 11/12), in six patients with schizophrenia and six control brains. Although in the past decade several studies performed transcriptome profiling in schizophrenia, this is the first study to investigate both hemispheres, providing new knowledge about possible brain asymmetry at the level of gene expression and its relation to schizophrenia. We found that in the left hemisphere, twelve genes from the DLPFC and eight genes from the MOFC were differentially expressed in patients with schizophrenia compared to controls. In the right hemisphere there was only one gene differentially expressed in the MOFC. We reproduce the involvement of previously reported genes TARDBP and HNRNPC in the pathogenesis of schizophrenia, and report seven novel genes: SART1, KAT7, C1D, NPM1, EVI2A, XGY2, and TTTY15. As the differentially expressed genes only partially overlap with previous studies that analyzed other brain regions, our findings indicate the importance of considering prefrontal cortical regions, especially those in the left hemisphere, for obtaining disease-relevant insights.
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- 2016
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36. Multichannel learning for training medical staff in Serbian army forces
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Šimić Goran, Ristanović Elizabeta, Jeftić Zoran, Presnall Biljana, and Vuruna Mladen
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education, distance ,medical staff ,military personnel ,serbia ,Medicine (General) ,R5-920 - Abstract
nema
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- 2016
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37. Heavy Metals and Essential Metals Are Associated with Cerebrospinal Fluid Biomarkers of Alzheimer’s Disease
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Babić Leko, Mirjana, primary, Mihelčić, Matej, additional, Jurasović, Jasna, additional, Nikolac Perković, Matea, additional, Španić, Ena, additional, Sekovanić, Ankica, additional, Orct, Tatjana, additional, Zubčić, Klara, additional, Langer Horvat, Lea, additional, Pleić, Nikolina, additional, Kiđemet-Piskač, Spomenka, additional, Vogrinc, Željka, additional, Pivac, Nela, additional, Diana, Andrea, additional, Borovečki, Fran, additional, Hof, Patrick R., additional, and Šimić, Goran, additional
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- 2022
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38. Total tau in cerebrospinal fluid detects treatment responders among spinal muscular atrophy types 1–3 patients treated with nusinersen
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Šimić, Goran, primary, Vukić, Vana, additional, Babić, Marija, additional, Banović, Maria, additional, Berečić, Ivana, additional, Španić, Ena, additional, Zubčić, Klara, additional, Golubić, Anja Tea, additional, Barišić Kutija, Marija, additional, Merkler Šorgić, Ana, additional, Vogrinc, Željka, additional, Lehman, Ivan, additional, Hof, Patrick R., additional, Sertić, Jadranka, additional, and Barišić, Nina, additional
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- 2022
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39. Serotonin Receptor Gene Polymorphisms Are Associated with Cerebrospinal Fluid, Genetic, and Neuropsychological Biomarkers of Alzheimer’s Disease
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Babić Leko, Mirjana, primary, Nikolac Perković, Matea, additional, Španić, Ena, additional, Švob Štrac, Dubravka, additional, Pleić, Nikolina, additional, Vogrinc, Željka, additional, Gunjača, Ivana, additional, Bežovan, Dora, additional, Nedić Erjavec, Gordana, additional, Klepac, Nataša, additional, Borovečki, Fran, additional, Zemunik, Tatijana, additional, Pivac, Nela, additional, Hof, Patrick R., additional, and Šimić, Goran, additional
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- 2022
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40. Biomarkeri Alzheimerove bolesti
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Španić Popovački, Ena, Šimić, Goran, Klepac, N, and Borovečki, F
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Alzheimer's disease ,biomarkers ,cerebrospinal fluid ,exosomes - Abstract
The neuropathologic hallmarks of Alzheimer's disease (AD) include the following key features: amyloid plaques, neurofibrillary tangles (NFTs ; composed of abnormally phosphorylated tau proteins), glial responses, and synaptic and neuronal loss. Across the AD continuum, Aβ plaques are thought to be the earliest pathological changes that are followed by tau NFTs accumulation, inflammation, synaptic degeneration, and neuronal loss. Neurodegeneration and synapse loss are the best correlates of clinical symptoms. Around 20% of the peptides and proteins in CSF are derived from the brain. The concentration of brain-derived peptides and proteins is the highest in the ventricles and decreases as it flows to the subarachnoid spaces. Blood testing is less invasive than CSF testing and can easily be performed in a variety of settings and at repeated intervals. Blood-based biomarkers, reflecting proteins originating from the brain, are typically present at low concentrations because of dilution in the volume of blood ; biomarkers present in the blood may also undergo additional proteolytic cleavage by proteases in plasma. CSF total tau protein (t-tau) measures the intensity of neurodegeneration in AD but is not a disease-specific marker. T-tau is increased in the CSF of patients with AD dementia and some other neurological conditions whereas phosphorylated tau (p-tau) in CSF measures the amount of tau that is phosphorylated, a variant of tau found in NFTs. In AD, p-tau in CSF is increased. On the other hand, CSF amyloid (Aβ42) is decreased in AD and is thought to reflect the aggregation and deposition of the protein in the brain. Neuronal/astrocyte-derived exosomes in AD have increased content of Aβ42, p-tau181, p-tau396, t-tau, BACE-1, APP, complement effector proteins, IL1β, IL-6, TNF-α, cathepsin D, LAMP-1, ubiquitinylated proteins, AACT, RAS suppressor protein, GP1B, whereas the content of neurogranin, neuromodulin, SNAP-25, synaptotagmin, synaptopodin, synaptophysin, complement regulatory proteins, neurotrophic and growth factors is decreased. Plasma brain-derived exosomes, either neuronal or astrocytic, have multiple potential roles. Harmful actions include the spreading of amyloid and tau pathological changes, mediating neuron-to-neuron propagation of both amyloid and tau oligomers, and induction of neuronal apoptotic pathways. Beneficial actions include binding of extracellular Aβ42 and promoting its degradation, neutralizing Aβ-induced disruption in synaptic plasticity, carrying nucleic acids with gene expression regulating abilities, and serving as therapeutic vehicles of drug delivery for AD. The current inconsistency between the extraction of exosomes and detection procedures of exosome cargos is one of the main limitations of exosome-related studies.
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- 2023
41. S100 calcium-binding protein B in cerebrospinal fluid of spinal atrophy patients patients treated with nusinersen
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Berečić, Ivana, Babić, Marija, Banović, Maria, Španić, Ena, Vukić, Vana, Vogrinc, Željka, Sertić, Jadranka, Barišić, Nina, Šimić, Goran, Kužnik Pokorn, Jona, and Krmpotić, Rea
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biomarker ,cerebrospinal fluid ,genetics ,motor functions ,nusinersen ,S100B protein ,spinal muscular atrophy ,therapy - Abstract
Introduction The main goal of this study was to evaluate the effect of nusinersen treatment in patients with spinal muscular atrophy (SMA) on cerebrospinal fluid (CSF) S100 calcium-binding protein B (S100B) levels. We were also interested in determining whether CSF S100B protein is associated with genetic biomarkers of SMA, scores on the Hammersmith Functional Motor Scale Expanded (HFMSE), and The Children’s Hospital of Philadelphia Infant Test of Neuromuscular Disorders (CHOP-INTEND) scales for the assessment of motor functions in SMA patients, as well as type and duration of SMA. Materials and Methods The study involved Thirty SMA patients at the University Hospital Centre Zagreb. Before administering nusinersen, CSF samples were obtained from patients via lumbar puncture. Using Enzyme-Linked Immunosorbent Assay (ELISA), the CSF S100B concentration was measured. We used the CHOP-INTEND and the HFMSE instruments to evaluate motor functions in SMA patients. The Multiplex Ligation-dependent Probe Amplification (MLPA) technique was utilized for all genetic analyses. SPSS version 19.0.1 (SPSS, Chicago, Illinois, United States) was used for statistical data analysis. Due to the non-normal distribution of the data, non-parametric tests were utilized. Results The levels of CSF S100B did not change significantly in SMA patients treated with nusinersen. In addition, there was no association between S100B levels and scores on the HFMSE and CHOP-INTEND scales or genetic biomarkers of SMA (the number of copies of the NAIP gene and the number of copies of the 7th exon of the SMN2 gene). The S100B levels of patients with distinct types of SMA were identical. However, S100B levels were positively correlated with disease duration. Discussion/Conclusion S100B protein did not exhibit the characteristics of an informative biological marker for the therapeutic response of patients with SMA during nusinersen therapy, as nusinersen administration had no effect on S100B levels. Also, no association between S100B protein and SMA genetic biomarkers was established. Nonetheless, S100B values were positively correlated with disease duration.
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- 2023
42. The association between the catechol-o-methyltransferase (COMT) genotypes with cognition in dementia
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Pivac, Nela, Nikolac Perković, Matea, Videtić Paska, Alja, Nedić Erjavec, Gordana, Uzun, Suzana, Kozumplik, Oliver, Borovečki, Fran, Filipčić, Igor, Mimica, Ninoslav, Babić Leko, Mirjana, Šimić, Goran, Švob Štrac, Dubravka, and Habek, Mario
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Alzheimer's disease ,catechol-o-methyl-transferase ,cognition ,dementia ,genetic variants - Abstract
Introduction: Alzheimer's disease (AD) and mild cognitive impairment (MCI) are characterized by different phases of cognitive decline. In AD, there is a progressive impairment of acquired cognitive abilities while subjects with MCI show less severe cognitive disturbances. Cognitive dysfunction develops as a result of the complex interactions between multiple genetic, epigenetic, developmental, and environmental factors. Among many genes involved in cognition is the gene coding for catechol- O-methyltransferase (COMT), the enzyme responsible for the degradation of dopamine, resulting in the modulation of dopaminergic function. Therefore, COMT genetic variants were studied in various dementias characterized by cognitive loss. The aim of the study was to evaluate the possible association between COMT rs6269 and COMT rs4680 polymorphisms and cognitive decline in subjects with AD and MCI. Methods: Cognitive deterioration was assessed with the Mini-Mental State Examination (MMSE) and the Clock Drawing test (CDT) scores in 193 patients with AD and 269 subjects with MCI. COMT rs6269 and COMT rs4680 (Val158Met) were genotyped using the real-time PCR. Multiple linear regressions and Kruskal Wallis ANOVA were used to detect the association of the COMT rs6269 or COMT rs4680 genotypes with cognitive decline. Results: Multiple linear regression showed that COMT rs6269 was significantly associated with MMSE and CDT scores and these effects were affected by diagnosis and COMT rs6269 genotypes and age. In contrast, multiple linear regression revealed that COMT rs4680 was not significantly associated with MMSE or CDT scores, and the only significant effects were found for age and diagnosis. To further evaluate the effect of COMT polymorphisms on cognition, all subjects were subdivided into AA, GA, or GG genotype carriers of the COMT rs6269 or COMT rs4680, respectively, and according to MMSE or CDT scores. Carriers of the GG genotype of the COMT rs6269 had significantly (p=0.007) lower CDT scores than AA carriers, while other genotype groups did not differ significantly according to the CDT or MMSE scores. Conclusion: Although COMT rs4680 (Val158Met) was reported to be related to cognitive loss in various neuropsychiatric disorders, present results revealed a significant association between the other COMT polymorphism, rs6269, with cognitive deterioration in dementia.
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- 2023
43. Svijest i pamćenje
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Šimić, Goran and Vukšić, Mario
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adultna neurogeneza ,anoetička svijest ,autonoetička svijest ,epizodičko pamćenje ,hipokampus ,infantilna amnezija ,mehanizam opće anestezije ,mentalno putovanje kroz vrijeme ,moždana kora ,noetička svijest ,proceduralno pamćenje ,semantičko pamćenje ,svijest ,temeljna mreža ,teorija uma - Abstract
Prema jednom od mnogih različitih i neusklađenih pogleda na fenomen svijesti, ključna razlika između stanja mozga u kojima smo svjesni i onih u kojima nismo jest u tome što sva svjesna stanja uključuju elemente neke vrste pamćenja. Anoetička (neznalačka) svijest ne zna ništa o prošlosti i budućnosti, nije dostupna introspekciji, odnosno meta-reprezentaciji, a temelji se na proceduralnom pamćenju. Noetička (znalačka) svijest temelji se na semantičkom pamćenju, tj. sadrži činjenice o općim zakonima, pravilima i konceptima, ne zahtjeva ekplicitnu samosvjesnost i ne omogućuje mentalno putovanje kroz vrijeme. Autonoetička svijest je najviši oblik svijesti o samome sebi u sadašnjem trenutku i u odnosu na vlastitu prošlost i budućnost. Njezino je uporište u epizodičkom pamćenju, te nam jedino ona daje osjećaj kontinuiteta jastva, ali također i mogućnost mentalnog putovanja u vlastitu prošlost i budućnost. Zbog navedene povezanosti pamćenja i svijesti smatra se da bi nam bolje razumijevanje neuronskih mreža koje posreduju pojedine vrste pamćenja mogle omogućiti i bolji uvid u različite vrste svijesti.
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- 2023
44. Mozak i svijest
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Šimić, Goran
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apsansna epilepsija ,budnost ,kortikotalamokortikalne petlje ,svjesnost ,poremećaji svijesti ,mentalno putovanje kroz vrijeme ,razvoj svijesti ,talamokortikalne oscilacije ,teorija uma - Abstract
U predavanju je najprije dan kratki povijesni pregled glavnih spoznaja o otkrićima povezanim s razumijevanjem svijesti (René Descartes, Hans Berger, Frédéric Bremer, Giuseppe Moruzzi i Horace Magoun, Alf Brodal, Mircea Steriade, Rodolfo Llinas, Edward Jones, Marcus Raichle, Michael Greicius, Randy Buckner). Zatim su opisane dvije glavne dimenzije svijesti (budnost i svjesnost), njihov predmnijevani biološki aparat (retikulska formacija i pridružene jezgre te ascendentni retikulski aktivacijski sustav, opće i specifične talamičke jezgre, talamokortikalne oscilacije, kortikokortikalne mreže i čvorišta) i glavni poremećaji. Na kraju su još opisani neki miljokazi u razvitku svijesti čovjeka, dan detaljniji opis temeljna mreža (default network), sposobnost mentalnog putovanja kroz vrijeme (mental time travel) i teorija uma (theory of mind). Navedene teme je predavač nastojao staviti u kontekst i objasniti važnost njihovog razumijevanja u svakodnevnom radu pedagoga.
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- 2023
45. Od unutarnjih i vanjskih čimbenika učenja do motivacije
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Šimić, Goran and Češi, Marijana
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regulacija emocija ,učenje ,unutarnji (spoznajni i emocionalni) čimbenici učenja ,vanjski (poticajni) čimbenici učenja ,čimbenici učenja povezani s razvojnim i individualnim razlikama te motivacijskim stanjima - Abstract
Kako bi preživjeli i stvorili bilo koji oblik društvene organizacije, moramo razumjeti djelovanje i namjere drugih osoba. Učenje oponašanjem temelj je kulture čovjeka, a djeca imitiraju odrasle u puno većoj mjeri nego drugi čovjekoliki majmuni. Stoga i podučavanje treba biti prvenstveno ono putem vlastitog primjera (npr. ako želite da dijete ne puši, onda nećete pred njim pušiti i govoriti mu da je to štetno). Iako odavno znamo kako djeca većinom nesvjesno usvajaju aktivnosti, navike, vokabular i ideje članova zajednice u kojoj žive, danas znamo da je većina takvih aktivnosti posredovana sustavima „zrcalnih“ neurona u moždanoj kori čeonog i tjemenog režnja koji se aktiviraju već samim gledanjem određenih aktivnosti drugih osoba (izreka „što majmun vidi, to majmun radi” još više vrijedi i za ponašanje čovjeka) ; takva aktivnost se npr. može snimiti u Brocinom motoričkom području za govor, dok dijete gleda druge osobe kako govore. Na temelju tih i drugih rezultata smatra se da je Brocino motoričko područje za govor nastalo i lateraliziralo se povećanjem susjednog područja neurona specijaliziranih za izvođenje pokreta (gestikulaciju) dominantne (desne) ruke. Djeca s poremećajima iz autističnog spektra, što danas uključuje i djecu s Aspergerovim sindromom, ne mogu „čitati” namjere drugih osoba ili ih razumiju pogrešno, imaju odstupanja u društvenoj komunikaciji i interakciji te atipičnosti u obilježjima općeg ponašanja i interesa. Djeca najbolje uče kad su uključena u aktivnosti za koje misle da su korisne u svakodnevnom životu, odnosno da su važne u društvenom/kulturnom kontekstu. Stoga im treba što češće ukazivati na korist naučenog sadržaja, a što više aktivnosti staviti u društveni/kulturni kontekst, npr.: - vježbanje govornih i komunikacijskih vještina kroz debate kakve se mogu vidjeti na televiziji ; - vježbanje sposobnosti pisanja i izražavanja kroz npr. izdavanje školskog lista ; - učenje kroz kontakte sa stručnjacima i znanstvenicima u lokalnoj zajednici ; - učenici mogu doći i na njihovo radno mjesto npr. tijekom aktivnosti u Tjednu mozga. Nova znanja se bolje pamte ako se nadovezuju na prethodno usvojena ; još je od Aristotela poznata činjenica da sposobnost učenja novoga zavisi od prethodnog znanja, jer je nove činjenice potrebno asocirati tj. povezati s onima koje su otprije poznate i stabilne u vlastitom mentalnom okruženju. Učenje je uspješnije ako učitelj pažljivo analizira prethodno znanje učenika o nekom sadržaju i upotrijebi ga kao polaznu točku za objašnjavanje novoga („building blocks of knowledge”). Podučavanje treba započeti od većih, općepoznatih i konkretnih činjenica, a zatim nadovezivati sitnije, manje poznate i apstraktne. Što je više različitih načina usvajanja i obrade određenog sadržaja, veća je i vjerojatnost njegovog kasnijeg prisjećanja (sinestezija) ; najmanje trećinu vremena treba rezervirati za ponavljanje i provježbavanje. Od najranije dobi djeca razvijaju strategije da bi si pomogla riješiti probleme na koje nailaze (tzv. preferirani kognitivni stil), npr. složeni prostorni problem čitanja karte može se riješiti korištenjem vidno-prostornih (smjer i mjesto na koje treba doći se kodira prostorno) ili verbalnih sposobnosti (prostorna informacija s kodira u instrukcije o skretanju korak po korak) ; većinom djevojčice preferiraju verbalni kognitivni stil i njime će riješiti taj zadatak verbalno iako je taj postupak u ovom slučaju manje učinkovit. Učitelj pomaže izravno (eksplicitno) ukazujući djetetu što je važno ili neizravno pomažu mu da samo dođe do odgovora ; u zavisnosti od starosti i sposobnosti učenika, u idealnom bi slučaju učitelji trebali postepeno smanjivati svoj utjecaj i pružanje podrške u rješavanju problema, tako da učenici preuzimaju sve veću odgovornost za vlastito učenje i napredovanje. Pritom djecu ne treba pohvaljivati i nagrađivati zato što su sama po sebi jako „pametna“ i „inteligentna“, pa su brzo i bez napora riješila određene zadatke i probleme, već ih treba pohvaljivati za učinjeni trud! Nekoliko je istraživanja provedenih još 2004. godine pokazalo da su ovakva djeca s vremenom sve više zaostajala jer su se sve manje trudila i hvatala ukoštac sa sve težim gradivom, te „odabirala“ samo ona područja i zadatke koji su im išli bolje, da bi na kraju ispitivanog razdoblja bila u značajnom zaostatku u odnosu na skupinu djece koja su pohvaljivana za napor koji su uložili da bi savladali određeni sadržaj. iako treba težiti razumijevanju, a ne pukom memoriranju, ne smije se zanemariti važnost poznavanja činjenica neophodnih za rješavanje problema. Površno zapamćene informacije lako se zaboravljaju ; nasuprot tome, kada se nešto dobro razumije, teže se zaboravlja i može se bez poteškoća koristiti u raznim situacijama. Stupanj lakoće usvajanja i upamćivanja novih činjenica veći je što je dijete mlađe, pa nije iznenađujuće da npr. predškolci znaju više pokemona nego stvarnih životinja. Dakle, same činjenice ne predstavljaju problem, već njihova zanimljivost, te logičnost (sustavnost) usvajanja. Jedna od najboljih predskazujućih varijabli za budući uspjeh djeteta je njegova sposobnost nositi se s negativnim emocijama te je li ih u stanju prenijeti i podijeliti s osobama u koje ima povjerenja. Učitelj treba pozitivno (nagrađivanjem, a ne kažnjavanjem) poticati učenike na učenje, poticati ih na suradnju s drugim učenicima, te da im zadavati smislene zadatke putem autentičnih materijala. Unutarnji (interni) čimbenici učenja (npr. inteligencija) su individualni i visoko nasljedni, ali se nikad ne smije zaboraviti da je plastičnost dječjeg mozga ogromna i da su ovi čimbenici u stalnoj i neprekidnoj interakciji s okolinom, te da je stoga kod svakog učenika daljnji napredak uvijek moguć. Dopaminske mezolimbičke i mezokortikalne projekcije čine kostur univerzalnog sustava nagrade. U slučaju neispunjenja nekih zadanih ciljeva aktivaciju ovog sustava čovjek pokušava postići na neki drugi, obično predvidljiviji i lakše dostupan način ; npr. neispunjenje školskih ili radnih zadataka ili neki drugi neuspjeh često se „nadoknađuje“ prekomjernim jedenjem (displacement behavior) da bi se ipak postigao planirani stupanj nagrade/ugode, a koji je zbog nekog razloga izostao. Inteligentnija djeca u istim uvjetima brže dolaze do točnih odgovora, te mogu dulje odgađati ugodu (čine bolje dugoročne izbore). O svemu tome više u knjizi "Uvod u neuroznanost emocija i osjećaja", Zagreb: Naklada Ljevak (2020).
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- 2023
46. Change of total tau protein in cerebrospinal fluid of patients with spinal muscular atrophy after nusinersen treatment
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Babić, Marija, Banović, Maria, Berečić, Ivana, Španić, Ena, Vukić, Vana, Vogrinc, Željka, Sertić, Jadranka, Barišić, Nina, Šimić, Goran, Kužnik Pokorn, Jona, and Krmpotić, Rea
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cerebrospinal fluid ,genetics ,motor functions ,nusinersen ,spinal muscular atrophy ,tau protein ,therapy - Abstract
Introduction The purpose of this study was to examine the effect of nusinersen treatment on the concentration of total tau (t-tau) protein in cerebrospinal fluid (CSF) of patients with spinal muscular atrophy (SMA). SMA is an autosomal recessive disorder characterized by degeneration of the spinal cord anterior horn motoneurons, which is caused by homozygous deletion or mutation of the survival motor neuron 1 (SMN 1) gene. We also analyzed the association between CSF t-tau and genetic biomarkers of SMA (the number of copies of the 7th exon of the SMN2 gene and the number of copies of the NAIP gene), scores on measures for assessing motor functions, duration and type of SMA. Materials and Methods 30 patients with SMA types 1, 2, and 3 who were treated at the University Hospital Centre in Zagreb participated in the study. T-tau concentration in CSF was determined using Enzyme-Linked Immunosorbent Assay (ELISA) from lumbar puncture samples of CSF. Their motor function was measured using the Children's Hospital of Philadelphia Infant Test of Neuromuscular Disorders (CHOP-INTEND) and the Hammersmith Functional Motor Scale Expanded (HFMSE). Using the Multiplex ligation-dependent probe amplification technique (MLPA), genetic analyses were conducted. SPSS version 19.0.1 was utilized for statistical data analysis (SPSS, Chicago, IL, USA). Results After treatment with nusinersen, CSF t-tau levels decreased significantly. There were no statistically significant differences in CSF t-tau levels between SMA patients with various genetic biomarkers. In addition, there was no correlation between t-tau levels and scores on the COOP-INTEND and HFMSE scales. There was no association between CSF t-tau and SMA duration or subtype. Discussion/Conclusion CSF t-tau protein proved to be a prognostic and theragnostic biological marker of a successful response in patients with SMA, as its average values decreased in a statistically significant manner following administration of nusinersen. However, t-tau did not correlate with genetic biomarkers of SMA, motor function assessment scale scores, disease duration, or disease type.
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- 2023
47. Anterograde and retrograde propagation of inoculated human tau fibrils and human tau oligomers in a non-transgenic rat tauopathy model
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Langer Horvat, Lea, Španić Popovački, Ena, Babić Leko, Mirjana, Zubčić, Klara, Horvat, Luka, Mustapić, Maja, Hof, Patrick R., and Šimić, Goran
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Alzheimer’s disease ,cognition ,neurofibrillary degeneration ,spatial working memory ,tau fibrils ,tau oligomers ,tau protein ,tauopathy model ,Wistar rat - Abstract
The tauopathy of Alzheimer’s disease (AD) is first observed in the brainstem and entorhinal cortex, spreading trans-synaptically along specific pathways to other brain regions with recognizable patterns. Tau propagation occurs retrogradely and anterogradely (trans-synaptically) along a given pathway and through exosomes and microglial cells. Some aspects of in vivo tau spreading have been replicated in transgenic mice models expressing a mutated human MAPT (tau) gene and in wild-type mice. In this study, we aimed to characterize the propagation of different forms of tau species in non-transgenic 3–4 months old wild-type rats after a single unilateral injection of human tau oligomers and tau fibrils into the medial entorhinal cortex (mEC). We determined whether different variants of the inoculated human tau protein, tau fibrils, and tau oligomers, would induce similar neurofibrillary changes and propagate in an AD-related pattern, and how tau- related pathological changes would correlate with presumed cognitive impairment. We injected human tau fibrils and tau oligomers stereotaxically into the mEC and examined the distribution of tau- related changes at 3 days and 4, 8, and 11 months post-injection using antibodies AT8 and MC1, which reveal early phosphorylation and aberrant conformation of tau, respectively, HT7, anti- synaptophysin, and the Gallyas silver staining method. Human tau oligomers and tau fibrils exhibited some similarities and some differences in their ability to seed and propagate tau-related changes. Both human tau fibrils and tau oligomers rapidly propagated from the mEC anterogradely into the hippocampus and various parts of the neocortex. However, using a human tau-specific HT7 antibody, 3 days post-injection we found inoculated human tau oligomers in the red nucleus, primary motor, and primary somatosensory cortex, a finding not seen in animals inoculated with human tau fibrils. In animals inoculated with human tau fibrils, 3 days post-injection the HT7 antibody showed fibrils in the pontine reticular nucleus, a finding explained only by uptake of human tau fibrils by incoming presynaptic fibers to the mEC and retrograde transport of inoculated human tau fibrils to the brainstem. Rats inoculated with human tau fibrils showed as early as 4 months after inoculation a spread of phosphorylated tau protein at the AT8 epitopes throughout the brain, dramatically faster propagation of neurofibrillary changes than with human tau oligomers. The overall severity of tau protein changes 4, 8, and 11 months after inoculation of human tau oligomers and tau fibrils correlated well with spatial working memory and cognition impairments, as measured by the T-maze spontaneous alternation, novel object recognition, and object location tests. We concluded that this non-trangenic rat model of tauopathy, especially when using human tau fibrils, demonstrates rapidly developing pathologic alterations in neurons, synapses, and identifiable pathways together with cognitive and behavioral changes, through the anterograde and retrograde spreading of neurofibrillary degeneration. Therefore, it represents a promising model for future experimental studies of primary and secondary tauopathies, especially AD.
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- 2023
48. Metals in Alzheimer's disease
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Babić Leko, Mirjana, Langer Horvat, Lea, Španić Popovački, Ena, Zubčić, Klara, Hof, Patrick R., and Šimić, Goran
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Alzheimer’s disease ,essential metals ,heavy metals ,biomarker ,Mendelian randomization - Abstract
The role of metals in the pathogenesis of Alzheimer’s disease (AD) is still debated. Although previous research has linked changes in essential metal homeostasis and exposure to environmental heavy metals to the pathogenesis of AD, more research is needed to determine the relationship between metals and AD. In this review, we included human studies that (1) compared the metal concentrations between AD patients and healthy controls, (2) correlated concentrations of AD cerebrospinal fluid (CSF) biomarkers with metal concentrations, and (3) used Mendelian randomization (MR) to assess the potential metal contributions to AD risk. Although many studies have examined various metals in dementia patients, understanding the dynamics of metals in these patients remains difficult due to considerable inconsistencies among the results of individual studies. The most consistent findings were for Zn and Cu, with most studies observing a decrease in Zn levels and an increase in Cu levels in AD patients. However, several studies found no such relation. Because few studies have compared metal levels with biomarker levels in the CSF of AD patients, more research of this type is required. Given that MR is revolutionizing epidemiologic research, additional MR studies that include participants from diverse ethnic backgrounds to assess the causal relationship between metals and AD risk are critical.
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- 2023
49. Transgeneracijska trauma - eksperimentalni modeli i epigenetički mehanizmi
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Šimić, Goran and Marčinko, Darko
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eksperimentalni modeli ,epigenetičke promjene ,nasljeđivanje ,transgeneracijska trauma - Abstract
• Pet je glavnih skupina eksperimentalnih modela transgeneracijske traume: 1. Modeli odvajanja od majke. Mladunci eksperimentalnih životinja odvajaju se od svojih majki na određeno vrijeme tijekom ranog razvoja. Takvo iskustvo izaziva dugotrajne promjene u ponašanju i fiziološke promjene u potomstvu, uključujući promjene u reakcijama na stres, ponašanja nalik anksioznosti i oštećenje društvenih interakcija. Fizičko i emocionalno zanemarivanje osnovnih potreba djeteta ima enorman traumatski učinak na dijete, a neke od promjena uočene su i u više generacija što ukazuje na transgeneracijski prijenos učinaka traume iz ranog života. Isti ili sličan učinak odvajanju ima i nedostatna majčinska skrb. Odvajanje od majke tijekom prvog tjedna života izaziva hipermetilaciju promotora gena NR3C1 za glukokortikoidni receptor u hipokampusu miša), a ovakav traumatski stres traje, zajedno s abnormalnim ponašanjem, doživotno i prenosi se trangeneracijski (Creasey N. et al., Dev. Psychopathol., 2023). Pokazano je da je status metilacije NR3C1 gena za glukokortikoidni receptor adolescenata starih 10-17 godina bio pod utjecajem majčinog iskustva nasilja od intimnog partnera tijekom trudnoće (Radtke K. M. et al., Transl. Psychiatry, 2011). Na uzorku od 93.391 osobe pokazalo se da su djevojčice evakuirane tijekom Drugog svjetskog rata iz Finske u švedske udomiteljske obitelji imale kao odrasle osobe dvostruko veći rizik psihijatrijske hospitalizacije zbog poremećaja raspoloženja u odnosu na njihove sestre koje nisu bile evakuirane (Santavirta T. et al., JAMA Psychiatry, 2018). Primjena vanjskih stresora u kombinaciji s odvajanjem potomaka od majke smatra se jednim od najboljih životinjskih modela za proučavanje transgeneracijskog nasljeđivanja traumatskog stresa budući da ponovljivo utječe na nekoliko uzastopnih generacija. Takav model koristi kombinaciju svakodnevnog nepredvidivog (nasumičnog) odvajanja mladunaca miševa (F1) od njihove majke (F0), s istodobnim nepredvidivim (nasumičnim) izlaganjem majke stresu (F0) tijekom odvajanja (model of unpredictable maternal separation and unpredictable maternal stress, MSUS). Ova ponavljajuća i nepredvidiva traumatska iskustva tijekom postnatalnog razdoblja od prvog do četrnaestog dana mijenjaju ponašanje potomstva u tri generacije. Pretpostavlja se da F2 i F3 generacija miševa koje pokazuju ponašanja slična depresiji nisu posljedica promjena u majčinskoj skrbi budući da navedeno ponašanje ostaje i nakon udomljavanja. Također, F2 i F3 generacija miševa pokazuje manji otpor u istraživanju nepoznate okoline i sveukupno rizičnije ponašanje (Franklin T. B. et al., Biol. Psychiatry, 2010 ; Gapp K. et al., Nat. Neurosci. 2014). 2. Modeli uvjetovanja straha. Eksperimentalne životinje, često glodavci, izlažu se traumatskom događaju poput strujnog udara na podlogu kaveza ili izloženost predatoru (Unconditioned Stimulus, US), spregnuti u vremenu s određenim neutralnim objektom ili kontekstom (Conditioned Stimulus, CS). Životinje nakon toga pokazuju reakciju straha kad su izložene CS-u. Uvjetovanje strahom može dovesti do transgeneracijskih učinaka, pri čemu potomci pokazuju pojačane reakcije i strah u neopasnim situacijama te čak i u odsutnosti izravne izloženosti traumatskom događaju. Kad se miševi nauče bojati mirisa, npr. u jednom pokusu mirisa urina lisice, i njihovi potomci i sljedeća generacija rađaju se bojeći ga se. Gen za njušni receptor aktiviran tim mirisom specifično je demetiliran u zametnoj liniji, pa i ekspresija toga receptora u potomaka dovodi do puno bržeg uvjetovanja straha od navedenog mirisa (Szyf M., Nature, 2014). 3. Modeli kroničnog stresa: eksp. životinje se izlažu produljenim stresorima tijekom duljeg razdoblja (društvena izolacija, fizičko ograničavanje kretanja, izloženost nepredvidivim uzrocima stresa ne koje životinja ne može utjecati). Kronični stres dovodi do promjena u ponašanju povezanih s anksioznosti, depresijom i kognitivnim oštećenjima. U nekim istraživanjima su dokumentirani transgeneracijski učinci kroničnog stresa, s promjenjenim reakcijama na stres u više generacija. 4. Modeli društvenog poraza: U modelima društvenog poraza, životinje se izlažu ponovljenim epizodama agresije i poraza od strane dominantnih srodnika. Takav kronični društveni stresor izaziva niz fizioloških promjena i promjena u ponašanju kod poraženih životinja, uključujući povećanu anksioznost, socijalno povlačenje i promijenjenu regulaciju HHO i lučenje endokrinih žlijezda. Istraživanja ukazuju da i potomci socijalno poraženih životinja često pokazuju slične promjene, što ukazuje transgeneracijski prijenos. 5. modeli prenatalnog stresa: modeli prenatalnog stresa uključuju izlaganje gravidnih životinja stresorima tijekom gestacije: fizičkom stresu, ograničavanju kretanja, izlaganju buci ili davanju tvari koje izazivaju stres (npr. kortikosterona). Dokazano je da prenatalni stres utječe na potomstva potomstvo te izaziva neurorazvojne promjene u migraciji neurona, sinaptogenezi, mijelinizaciji, a kasnije abnormalnosti ponašanja, povećanu osjetljivosti na stres i anksiozne poremećaje. Sve navedene promjene uočene su i u nekoliko generacija. Epigenetička regulacija odvija se i na transkripcijskoj i post-transkripcijskoj razini. Proces starenja svih stanica i tkiva uključuje rasprostranjene epigenetičke promjene. Gotovo sve neurodegenerativne bolesti, napose Alzheimeova bolest, povezane su s poremećenom epigenetičkom regulacijom. Reverzibilna narav epigenetičkih promjena obećavajući je terapijski cilj, a za bolje razumijevanje epigenetičkih procesa još uvijek su najveća prepreka metodološki problemi - skupoća opreme i nestandardiziranost postupaka. Tijekom starenja dolazi do sveukupnog smanjenja metilacije DNA, iako su neki pojedinačni geni hipermetilirani (npr. promotori BDNF i CREB gena). Sveukupna razina sniženja može se upotrebljavati za određivanje starosti (Horvathov epigenetički sat, Horvath S. Gen. Biol., 2013). Budući da pluripotentne stanice uspijevaju izbjeći promjene metilacije DNA povezane sa starenjem, reprogramiranje starih stanica može ih regenerirati (epigenetička rejuvenacija). Inicijalno je ireverzibilni inhibitor DNA metil-transferaze 1 (DNMT1) 5-azacitidin odobren od FDA 19. svibnja 2004. za mijelodisplastičke sindrome (kojima je uzrok hipermetilacija tumor-supresorskih gena), a zatim su mu proširene indikacije 2009, 2012 i 2014 za liječenje različitih zloćudnih tumora, uključujući akutnu mijeloičnu leukemiju. Time je otvoren put za istraživanje i registraciju i drugih spojeva koji djeluju na epigenetičke mehanizme u drugim bolestima i stanjima, npr. vjeruje se da bi se sprječavanjem hipometilacije APP gena moglo spriječiti povećano stvaranje amiloida u prevenciji ne samo Alzheimerove bolesti nego možda i samog procesa starenja. U stadiju mladih spermatogonija histoni su hiperacetilirani, ali s vremenom se i ubikvitiniraju, a histone zamjenjuju protamini 1 i 2 u omjeru 1:1 ; takvo nuklearno zbijanje DNA karakteristika je zrelih spermija. Oko 5–15% histona otporno je na zamjenu protaminima i zadržava se i u zrelih spermija ; zadržani histoni nalaze se na genima važnima za razvoj, nekim poznatim utisnutim (imprinted) genima i lokusima mikroRNA gena, a sadrže i epigenetičke modifikacije H3K4 metilaciju (H3K4me3) i H3K27 metilaciju (H3K27me3). Mikro-RNA nastaju od svojih vlastitih gena (60%) ili od introna (oko 40% svih miRNA). U većini slučajeva su orijentirane u suprotnom smjeru od susjednih gena pa se transkribiraju kao neovisne jedinice, ali u nekim slučajevima se transkribiraju s genom domaćinom i funkcija im je vjerojatno povezana. Prva miRNA otkrivena je 1993. godine, a do danas ih je opisano oko 3000 (većina u mozgu). Skoro svaka miRNA može imati i po više stotina ciljnih mRNA. Oko 10% svih miRNA su male interferirajuće RNA (siRNA) koje se vežu za molekule glasničke RNA (mRNA) i sprječavaju njihovo prevođenje u proteine ili potiču njihovu razgradnju putem RISC kompleksa (RNA-induced silencing complex). S obzirom na činjenicu da se u razdoblju ranog embrijskog razvitka 5-7 dana u stadiju blastociste, kad je zametak velik samo 70-100 stanica, vrši opsežna demetilacija cijeloga genoma da bi se aktivirali geni koji daju stanicama svojstvo pluripotentnosti, zaključeno je da još uvijek nije jasno na koji se način održava prijenos epigenetičkih promjena u sljedeću/sljedeće generacije.
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- 2023
50. Effects of heterologous human tau protein expression in yeast models of proteotoxic stress response
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Zubčić, Klara, Franić, Dina, Pravica, Mihaela, Hof, Patrick R, Šimić, Goran, and Boban, Mirta
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chronological aging ,proteasome ,protein aggregation ,protein homeostasis ,protein interaction assay ,protein quality control ,toxicity ,yeast - Abstract
Background: The primary histological characteristic of Alzheimer's disease is the presence of neurofibrillary tangles, which are large aggregates of tau protein. Aging is the primary risk factor for the development of Alzheimer's disease, however, the underlying causes of tau protein aggregation and toxicity are unclear. Aims: Here we investigated tau aggregation and toxicity under the conditions of compromised protein homeostasis. Methods: We used heterologous expression of human tau protein in the unicellular eukaryote yeast Saccharomyces cerevisiae with evolutionarily conserved protein quality control pathways and examined tau-dependent toxicity and aggregation using growth assays, fluorescence microscopy, and a split luciferase-based reporter NanoBiT. Results: Tau protein expressed in yeast under mild proteotoxic stress, or in mutants with impaired pathways for proteotoxic stress response, did not lead to synthetic toxicity or the formation of obvious aggregates. Chronologically old cells also did not develop observable tau aggregates. Our examination of tau oligomerization in living cells using NanoBiT reporter suggests that tau does not form significant levels of oligomers under basal conditions or under mild proteotoxic stress. Conclusion: Together our data suggest that human tau protein does not represent a major burden to the protein quality control system in yeast cells.
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- 2023
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