148 results on '"Śmietana, P."'
Search Results
2. Double-layer optical fiber interferometer with bio-layer-modified reflector for label-free biosensing of inflammatory proteins
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Dariusz Burnat, Monika Janik, Norbert Kwietniewski, Agnieszka Martychowiec, Paulina Musolf, Krzysztof Bartnik, Marcin Koba, Tomasz P. Rygiel, Joanna Niedziółka-Jönsson, and Mateusz Śmietana
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Interferometry ,Thin film ,Optical fiber sensor ,Label-free biosensing ,Inflammatory protein ,Myeloperoxidase ,Medicine ,Science - Abstract
Abstract This work discusses label-free biosensing application of a double-layer optical fiber interferometer where the second layer tailors the reflection conditions at the external plain and supports changes in reflected optical spectrum when a bio-layer binds to it. The double-layer nanostructure consists of precisely tailored thin films, i.e., titanium (TiO2) and hafnium oxides (HfO2) deposited on single-mode fiber end-face by magnetron sputtering. It has been shown numerically and experimentally that the approach besides well spectrally defined interference pattern distinguishes refractive index (RI) changes taking place in a volume and on the sensor surface. These are of interest when label-free biosensing applications are considered. The case of myeloperoxidase (MPO) detection—a protein, which concentration rises during inflammation—is reported as an example of application. The response of the sensor to MPO in a concentration range of 1 × 10−11–5 × 10−6 g/mL was tested. An increase in the MPO concentration was followed by a redshift of the interference pattern and a decrease in reflected power. The negative control performed using ferritin proved specificity of the sensor. The results reported in this work indicate capability of the approach for diagnostic label-free biosensing, possibly also at in vivo conditions.
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- 2024
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3. Effects of School-Based Neurofeedback Training on Attention in Students with Autism and Intellectual Disabilities
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Gacek, Michał, Smoleń, Tomasz, Krzywoszański, Łukasz, Bartecka-Śmietana, Agnieszka, Kulasek-Filip, Beata, Piotrowska, Maja, Sepielak, Dominika, and Supernak, Katarzyna
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- 2024
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4. Nano‐Photonic Crystal D‐Shaped Fiber Devices for Label‐Free Biosensing at the Attomolar Limit of Detection
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Ignacio Del Villar, Esteban Gonzalez‐Valencia, Norbert Kwietniewski, Dariusz Burnat, Dayron Armas, Emil Pituła, Monika Janik, Ignacio R. Matías, Ambra Giannetti, Pedro Torres, Francesco Chiavaioli, and Mateusz Śmietana
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bloch surface wave ,label‐free fiber‐based biosensor ,limit of detection ,nano‐photonic crystal ,thin films ,Science - Abstract
Abstract Maintaining both high sensitivity and large figure of merit (FoM) is crucial in regard to the performance of optical devices, particularly when they are intended for use as biosensors with extremely low limit of detection (LoD). Here, a stack of nano‐assembled layers in the form of 1D photonic crystal, deposited on D‐shaped single‐mode fibers, is created to meet these criteria, resulting in the generation of Bloch surface wave resonances. The increase in the contrast between high and low refractive index (RI) nano‐layers, along with the reduction of losses, enables not only to achieve high sensitivity, but also a narrowed resonance bandwidth, leading to a significant enhancement in the FoM. Preliminary testing for bulk RI sensitivity is carried out, and the effect of an additional nano‐layer that mimics a biological layer where binding interactions occur is also considered. Finally, the biosensing capability is assessed by detecting immunoglobulin G in serum at very low concentrations, and a record LoD of 70 aM is achieved. An optical fiber biosensor that is capable of attaining extraordinarily low LoD in the attomolar range is not only a remarkable technical outcome, but can also be envisaged as a powerful tool for early diagnosis of diseases.
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- 2024
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5. Peptide-Based Rapid and Selective Detection of Mercury in Aqueous Samples with Micro-Volume Glass Capillary Fluorometer
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Marta Sosnowska, Emil Pitula, Monika Janik, Piotr Bruździak, Mateusz Śmietana, Marcin Olszewski, Dawid Nidzworski, and Beata Gromadzka
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low-volume measurements ,optical sensing ,micro-volume glass capillary fluorometer peptide-based sensor ,mercury detection ,turn-off fluorescence ,mercury ions (Hg2+) detection ,Biotechnology ,TP248.13-248.65 - Abstract
Mercury, a toxic heavy metal produced through both natural and anthropogenic processes, is found in all of Earth’s major systems. Mercury’s bioaccumulation characteristics in the human body have a significant impact on the liver, kidneys, brain, and muscles. In order to detect Hg2+ ions, a highly sensitive and specific fluorescent biosensor has been developed using a novel, modified seven amino acid peptide, FY7. The tyrosine ring in the FY7 peptide sequence forms a 2:1 complex with Hg2+ ions that are present in the water-based sample. As a result, the peptide’s fluorescence emission decreases with higher concentrations of Hg2+. The FY7 peptide’s performance was tested in the presence of Hg2+ ions and other metal ions, revealing its sensitivity and stability despite high concentrations. Conformational changes to the FY7 structure were confirmed by FTIR studies. Simultaneously, we designed a miniaturized setup to support an in-house-developed micro-volume capillary container for volume fluorometry measurements. We compared and verified the results from the micro-volume system with those from the commercial setup. The micro-volume capillary system accommodated only 2.9 µL of sample volume, allowing for rapid, sensitive, and selective detection of toxic mercury (II) ions as low as 0.02 µM.
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- 2024
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6. Enhanced spectroelectrochemistry with lossy-mode resonance optical fiber sensor
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Monika Janik, Katarzyna Lechowicz, Emil Pituła, Jakub Warszewski, Marcin Koba, and Mateusz Śmietana
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Medicine ,Science - Abstract
Abstract Spectroelectrochemical (SEC) measurements play a crucial role in analytical chemistry, utilizing transparent or semitransparent electrodes for optical analysis of electrochemical (EC) processes. The EC readout provides information about the electrode's state, while changes in the transmitted optical spectrum help identify the products of EC reactions. To enhance SEC measurements, this study proposes the addition of optical monitoring of the electrode. The setup involves using a polymer-clad silica multimode fiber core coated with indium tin oxide (ITO), which serves as both the electrode and an optical fiber sensor. The ITO film is specifically tailored to exhibit the lossy-mode resonance (LMR) phenomenon, allowing for simultaneous optical monitoring alongside EC readouts. The LMR response depends on the properties of the ITO and the surrounding medium's optical properties. As a result, the setup offers three types of interrogation readouts: EC measurements, optical spectrum analysis corresponding to the volume of the analyte (similar to standard SEC), and LMR spectrum analysis reflecting the state of the sensor/electrode surface. In each interrogation path, cyclic voltammetry (CV) experiments were conducted individually with two oxidation–reduction reaction (redox) probes: potassium ferricyanide and methylene blue. Subsequently, simultaneous measurements were performed during chronoamperometry (CA) with the sensor, and the cross-correlation between the readouts was examined. Overall, this study presents a novel and enhanced SEC measurement approach that incorporates optical monitoring of the electrode. It provides a comprehensive understanding of EC processes and enables greater insights into the characteristics of the analyte.
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- 2023
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7. Brachytherapy in Breast Cancer Treatment: Physical and Biological Aspects
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Monika Maj-Dziedzic, Anna Brzozowska, Marcelina Sikora, Marta Zarzycka, Ines Plewniok, Jeremiasz Dubiel, Adrian Maj, Greta Śmietana, Martyna Warno, and Wiktor Kozik
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brachytherapy ,conservative treatment ,breast cancer ,BT ,MammoSite ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
This scientific paper focuses on the treatment of breast cancer, one of the most common cancers among women. Despite increased awareness and the popularity of screening tests, statistics indicate a significant rise in incidence. The paper presents breast-conserving treatment methods, including brachytherapy, as a modern technique with promising outcomes. It describes the physical properties of ionizing radiation used in brachytherapy, discussing the photoelectric effect, Compton effect, and the phenomenon of pair production. The paper then delves into the biological effects of ionizing radiation, emphasizing the dependence on the cell cycle phase. It highlights lethal, sublethal, and potentially lethal cellular damage, categorizing the effects of radiation interaction into early and late responses. The discussion transitions to the application of brachytherapy in breast cancer treatment, focusing on various techniques such as LDR, PDR, and HDR. The paper provides a detailed description of brachytherapy's use in breast-conserving treatment, considering contraindications, treatment planning, and Accelerated Partial Breast Irradiation (APBI) techniques. The radioisotopes used in brachytherapy are also presented, with special attention to Iridium-192. The physical and practical aspects related to this isotope are discussed, along with other commonly used radioisotopes such as Cesium-137, Cobalt-60, and Strontium-90. The paper concludes with a summary, emphasizing the significance of brachytherapy in breast cancer treatment and outlining its prospects for development. The authors highlight precision and shortened therapy duration.
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- 2024
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8. Exosomes - breakthrough in the regenerative medicine and a way to improve the quality of the life
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Anna Brzozowska, Monika Maj-Dziedzic, Marcelina Sikora, Marta Zarzycka, Ines Plewniok, Jeremiasz Dubiel, Adrian Maj, Martyna Warno, Wiktor Kozik, and Greta Śmietana
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Exosomes ,regenerative medicine ,stem cells ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
Introduction Exosomes are small, membrane-bound extracellular vesicles that play a pivotal role in intercellular communication. Exosomes have garnered significant interest in regenerative medicine due to their unique properties that support tissue repair, regeneration, and healing. These extracellular vesicles play a crucial role in intercellular communication, and their regenerative potential makes them promising tools in the field of regenerative medicine. Purpose of the study This review aims to present the regenerative properties of exosomes and their clinical applications in many fields of medicine. The main aim is to present exosomes as a substance that restores health, youth and vitality. Material and method Literature review was primarily based on scientific materials, English and Polish databases and original research. The following English keywords and its Polish equivalents were used to search Google Scholar and PubMed: “ exosomes", “regenerative medicine”, “stem cells”.
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- 2024
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9. Vaccinations in Pregnancy. A Comprehensive Overview
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Ines Plewniok, Monika Maj-Dziedzic, Marcelina Sikora, Marta Zarzycka, Anna Brzozowska, Jeremiasz Dubiel, Adrian Maj, Martyna Warno, Wiktor Kozik, and Greta Śmietana
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pregnancy ,vaccination ,vaccination safe in pregnancy ,planning a pregnancy ,vaccinations contraindicated during pregnancy ,vaccinations of women in childbearing age ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
Introduction and purpose Pregnancy is associated with many changes in the mother's body, allowing for the proper development of the fetus, but unfortunately it also predisposes many potentially harmless infections to become much more severe during pregnancy. Therefore, vaccinations during pregnancy play a very important protective role both for the mother, her unborn child and to the child immediately after birth. Immunization during pregnancy and in the preconception period protects against many infectious diseases and related complications. By receiving the vaccine, specific antibodies are synthesized and transported across the placenta to the fetus. They protect the baby during the first months of life, when the baby cannot receive vaccinations due to its age yet. Vaccinations during pregnancy can be divided into necessary, possible and recommended. Recommended vaccinations include against diphtheria, tetanus, pertussis, influenza, Covid19 and RSV. They are especially recommended for every pregnant woman who has no permanent or temporary contraindications. A special group of vaccinations are those necessary to perform, which play the main role as post-exposure prophylaxis and must be administered immediately after exposure to the agent causing the infection. These include mainly vaccination against tetanus and rabies. The vaccinations that can be performed include those targeted at a specific group of patients with various chronic diseases who are at risk or traveling to countries where there is an increased risk of illness. During a doctor's visit to a woman planning a pregnancy, it is important to collect a detailed interview regarding vaccination history, past infectious infections and chronic diseases. This allows us to prepare an individualized vaccination schedule recommended both before and during pregnancy.
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- 2024
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10. Understanding of Eosinophilic Esophagitis in Children - A Comprehensive Study on Epidemiology, Clinical Manifestations, Diagnosis and Innovative Treatment Modalities
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Marta Zarzycka, Marcelina Sikora, Ines Plewniok, Monika Maj-Dziedzic, Jeremiasz Dubiel, Anna Brzozowska, Adrian Maj, Greta Śmietana, Martyna Warno, and Wiktor Kozik
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eosinophilic esophagitis EoE ,pediatric patients ,clinical manifestations ,diagnostic methods ,treatment methods ,biological therapy ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
Introduction: In the late 1960s, probable cases of eosinophilic esophagitis (EoE) emerged, initially linked to esophageal rings and congenital causes or gastroesophageal reflux disease (GERD). Doubts about the GERD association arose due to poor responses to antisecretory therapy. EoE is now a significant pediatric health concern, impacting 1 to 7 cases per 10,000 children. Purpose of the Study: This study aims to comprehensively explore EoE's epidemiology, etiology, subtypes, clinical manifestations, diagnostic methods, and treatment modalities. Materials and Methods: The study employs a cross-sectional analysis of pediatric EoE patients, utilizing endoscopic evaluation and histological assessment. Three distinct EoE subtypes are identified based on pathogenic characteristics. Clinical manifestations, diagnostic methods, and treatments, including endoscopy, are examined. Results: Clinical manifestations span a broad spectrum in the pediatric population. Diagnostic methods include endoscopy, esophageal manometry, impedance-pH monitoring, capsule endoscopy, and string tests. Three distinct EoE subtypes are identified with unique characteristics. Treatment modalities involve dietary management, proton pump inhibitors, topical corticosteroids, biologic therapies, allergen immunotherapy, and endoscopic interventions. Conclusion: Formerly associated with GERD, EoE is now a significant pediatric health concern. The study underscores the importance of comprehensive diagnostic approaches and diverse treatment modalities, including promising biologic therapies and allergen immunotherapy. Understanding these aspects is crucial for effective management and improved outcomes in patients.
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- 2024
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11. Revolutionizing Pneumonia Assessment: Modern Diagnostics and Traditional Scales
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Marcelina Sikora, Marta Zarzycka, Ines Plewniok, Monika Maj-Dziedzic, Jeremiasz Dubiel, Anna Brzozowska, Adrian Maj, Greta Śmietana, Martyna Warno, and Wiktor Kozik
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pneumonia ,severity assessment ,CRB-65 scale ,CURB-65 scale ,diagnostic techniques ,Biomarkers ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
Introduction and Purpose: Pneumonia's severity demands a thorough assessment, guided by CRB-65 and CURB-65 scales. This article underscores the crucial role of accurate interpretation and effective use of these scales, emphasizing the need for a comprehensive understanding of pneumonia for proficient severity assessment. Material and Method: The article identifies populations disproportionately affected by pneumonia, stressing the necessity of standardized severity assessment due to diverse clinical manifestations. It highlights the importance of accurate diagnosis through the integration of clinical evaluation, imaging, and laboratory tests. While CRB-65 and CURB-65 offer a systematic approach, potential pitfalls are discussed, emphasizing the risk of misinterpretation. Results: Principles for correct interpretation are outlined, emphasizing holistic evaluation, timely application, and clinical acumen. Common mistakes, including overreliance on scores and incomplete data collection, are identified. The discussion introduces advanced diagnostic techniques like biomarkers and imaging, enhancing severity assessment. Cardiac biomarkers and computed tomography contribute to refined evaluation, aligning with recommendations from renowned organizations. Conclusion: The integration of traditional tools with advanced diagnostics signifies a paradigm shift in pneumonia assessment. Emphasizing correct interpretation and avoiding common mistakes ensures a comprehensive approach. Recent research supports advanced diagnostic techniques, aligning with recommendations. The article advocates for continuous education and collaboration among healthcare professionals, contributing to improved patient outcomes and overall healthcare efficacy.
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- 2024
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12. The influence of lipoproteina(a) on cardio-vascular diseases
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Monika Maj-Dziedzic, Anna Brzozowska, Marcelina Sikora, Marta Zarzycka, Ines Plewniok, Jeremiasz Dubiel, Adrian Maj, Greta Śmietana, Martyna Warno, and Wiktor Kozik
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lipoproteina(a) ,cardiovascular risk ,cardiovascular disease ,aortic stenosis ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
Introduction The current evidence from 2022 published by European Atherosclerosis Society brings the importance of the level of lipoprotein(a) and its influence on the human health. Especially atherosclerotic cardio-vascular events such as myocardial infarction, heart failure, stroke, atherosclerosis are taken into account. They prove, that the associations between the level of Lp(a) is linear with the occurrence of cardio-vascular events. High level of Lp(a), may contribute to the aortic stenosis, cause has pro-inflammatory and pro-atherosclerotic properties. The newest finding demonstrate that Lp(a) has no link with venous thrombosis. Nonetheless, very low level of may contribute with type 2 diabetes. It is recommended to measure the level of lipoprotein(a) at least once in adults to search the patients with higher value than norm. Even at low level of LDL, high Lp(a) is a risk factor for ASCVD. It brings the clinical importance of early detection of potential cardio-vascular diseases and introduction of management. The newest statement form EAS also brings promising possibilities due to specific Lp(a)-lowering therapies is in phase II/III trials. Aim of the study The following paper aims to present a review of the current knowledge about the influence of the level of Lp(a) on cardio-vascular disease and seeks to enhance knowledge and promote effective management of this prevalent condition. The primary goal is to promote the current problem to health care workers with up-to-date information to facilitate early recognition of cardiovascular events. Materials and methods This article presents the current state of knowledge of lipoprotein(a) found in various scientific articles. The following English keywords and its Polish equivalents were used to search Google Scholar's medical databases: lipoprotein(a), cardio-vascular disease, cardiovascular risk, aortic stenosis. The articles most pertinent to the subject have been chosen.
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- 2024
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13. Enhanced spectroelectrochemistry with lossy-mode resonance optical fiber sensor
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Janik, Monika, Lechowicz, Katarzyna, Pituła, Emil, Warszewski, Jakub, Koba, Marcin, and Śmietana, Mateusz
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- 2023
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14. Low-volume label-free SARS-CoV-2 detection with the microcavity-based optical fiber sensor
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Janik, Monika, Gabler, Tomasz, Koba, Marcin, Panasiuk, Mirosława, Dashkevich, Yanina, Łęga, Tomasz, Dąbrowska, Agnieszka, Naskalska, Antonina, Żołędowska, Sabina, Nidzworski, Dawid, Pyrć, Krzysztof, Gromadzka, Beata, and Śmietana, Mateusz
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- 2023
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15. Low-volume label-free SARS-CoV-2 detection with the microcavity-based optical fiber sensor
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Monika Janik, Tomasz Gabler, Marcin Koba, Mirosława Panasiuk, Yanina Dashkevich, Tomasz Łęga, Agnieszka Dąbrowska, Antonina Naskalska, Sabina Żołędowska, Dawid Nidzworski, Krzysztof Pyrć, Beata Gromadzka, and Mateusz Śmietana
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Medicine ,Science - Abstract
Abstract Accurate and fast detection of viruses is crucial for controlling outbreaks of many diseases; therefore, to date, numerous sensing systems for their detection have been studied. On top of the performance of these sensing systems, the availability of biorecognition elements specific to especially the new etiological agents is an additional fundamental challenge. Therefore, besides high sensitivity and selectivity, such advantages as the size of the sensor and possibly low volume of analyzed samples are also important, especially at the stage of evaluating the receptor-target interactions in the case of new etiological agents when typically, only tiny amounts of the receptor are available for testing. This work introduces a real-time, highly miniaturized sensing solution based on microcavity in-line Mach–Zehnder interferometer (μIMZI) induced in optical fiber for SARS-CoV-2 virus-like particles detection. The assay is designed to detect conserved regions of the SARS-CoV-2 viral particles in a sample with a volume as small as hundreds of picoliters, reaching the detection limit at the single ng per mL level.
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- 2023
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16. First report and molecular analysis of population stability of the invasive Gulf wedge clam, Rangia cuneata (G.B. Sowerby I, 1832) in the Pomerian Bay (Southern Baltic Sea)
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R. Panicz, P. Eljasik, K. Wrzecionkowski, N. Śmietana, and M. Biernaczyk
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Allelic drift ,condition index ,invasive alien species ,population structure ,range expansion ,Zoology ,QL1-991 - Abstract
Native to the Gulf of Mexico, Gulf wedge clam (Rangia cuneata) has been successfully invading Baltic Sea since first introduction with ballast waters in 2010. In this study, we report new occurrence sites in the Pomeranian Bay and in the brackish water of the Szczecin Lagoon. We aimed to describe the structure and stability of the new population of Gulf wedge clam using ecological indicators (i.e. condition index, length-at-age) and a molecular approach targeting first cytochrome oxidase subunit (COX1) fragments. The study showed an age structure dominated by adult clams (aged 4+), rather than the often reported juveniles. We found that the condition of the R. cuneata population in the Pomeranian Bay is characteristic of the expansion model after bottleneck. Genetic analyses indicated low nucleotide (π = 0.00387 ± 0.00012) and haplotype (h = 0.79 ± 0.018) diversity. A haplotype network inferred by a median-joining method showed lack of haplotype H6 (Chesapeake Bay, NW Atlantic) and numerous individuals with haplotype H1 (Gulf of Mexico). Demographic parameters (non-significant Tajima’s D = 2.058, Fu’s Fs = 2.298, Fu and Li’s D* = 1.195, and significant Fu and Li’s F test = 1.757) suggested that the population underwent a moderate population bottleneck, while analysis of mismatch distribution showed a bimodal shape which may imply population admixture as a consequence of “allelic surfing”. Moreover, we concluded that R. cuneata has successfully invaded the basin of the LNG terminal, although our study proved non-linear growth of this species.
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- 2022
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17. Mój ból jest większy niż twój
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Marta Śmietana
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upamiętnienie ,proces ,cmentarz ,muzeum ,cierpienie ,Law ,Political science - Abstract
MY PAIN IS GREATER THAN YOURS: THE PROCESS OF COMMEMORATING KL PLASZOW This article presents an accompanying description of the process involved in commemorating the former labor and concentration camp, Plaszow. The actors involved primarily differ in the function they desire to attribute to the memorial, while the strong emotions accompanying them are primarily a consequence of the process’s underlying cause – death ingrained in the post-camp landscape. Engagement in the process evokes suffering, which limits the possibilities for dialogue surrounding commemoration. Recently, the appointment of a caretaker for the site of memory, the KL Plaszow Museum, has proven to be the most influential factor in the dynamics of the process. Given that the museum is an enduring institution, there is now a strong need to explore new forms of mediation that facilitate understanding. In the author’s view, specialists in culture studies, with their expert competencies, can serve as neutral intermediaries bridging the diverse expectations of the actors.
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- 2023
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18. Machine Learning Prediction Techniques in the Optimization of Diagnostic Laboratories’ Network Operations
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Krzysztof Regulski, Andrzej Opaliński, Jakub Swadźba, Piotr Sitkowski, Paweł Wąsowicz, and Agnieszka Kwietniewska-Śmietana
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machine learning ,optimization ,quality control ,laboratory diagnostics ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The article presents an outline of the concept of a prototype system allowing for the optimization of inventory management in a diagnostic laboratory on the basis of patients results. The effectiveness of laboratory diagnostics depends largely on the appropriate management of resources and the quality of tests. A functional quality management system is an integral element of every diagnostic laboratory, ensuring reliability and appropriate work standards. This system includes maintaining correct and reliable analytical test results as well as the optimal use of the laboratory equipment’s processing capacity and the appropriate organization of the supply chain—both analytical material and reagents. It is extremely important to avoid situations in which tests cannot be performed due to a lack of reagents, the overloading of analyzers, or improper calibration. Therefore, the accurate prediction of the number of orders is crucial to optimize the laboratory’s operations, both in the short term—for the next few hours and minutes—and in the longer term, even monthly, which will allow for the appropriate planning of reagent stock. As part of the research presented in this article, machine learning methods were used to implement the above functionalities, which allowed for the development of a prototype of a laboratory optimization system using patient test results as a basis.
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- 2024
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19. Assessment of Eurasian lynx reintroduction success and mortality risk in north-west Poland
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Jakub Skorupski, Magdalena Tracz, Maciej Tracz, and Przemysław Śmietana
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Medicine ,Science - Abstract
Abstract Despite recent local reintroductions of the Eurasian lynx Lynx lynx in central and north-eastern Poland, the increase in its population was not followed by its westward expansion. To address this problem and restore the lynx population in north-western Poland, 61 captive-born individuals of Baltic population origin were released in the province of Western Pomerania in 2019–2021. Prior to their release, all the animals underwent an adaptation training phase. They were then set free according to a hard-release protocol and subsequently monitored by means of GPS telemetry. In order to assess the short-term reintroduction success, the survival and causes of death of the released individuals were studied as a function of sex, age, training time, and release time and place. The overall survival rate was 71.15%, the median survival time 202 days. Most mortality, due to environmental factors, i.e. scabies (> 200 days) or traffic collisions (
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- 2022
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20. Assessment of Eurasian lynx reintroduction success and mortality risk in north-west Poland
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Skorupski, Jakub, Tracz, Magdalena, Tracz, Maciej, and Śmietana, Przemysław
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- 2022
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21. Electro-optically modulated lossy-mode resonance
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Śmietana Mateusz, Janaszek Bartosz, Lechowicz Katarzyna, Sezemsky Petr, Koba Marcin, Burnat Dariusz, Kieliszczyk Marcin, Stranak Vitezslav, and Szczepański Paweł
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electro-optical modulation ,label-free sensing ,lossy-mode resonance ,magnetron sputtering ,optical fiber sensor ,transparent conductive oxides (tcos) ,Physics ,QC1-999 - Abstract
Sensitivity, selectivity, reliability, and measurement range of a sensor are vital parameters for its wide applications. Fast growing number of various detection systems seems to justify worldwide efforts to enhance one or some of the parameters. Therefore, as one of the possible solutions, multi-domain sensing schemes have been proposed. This means that the sensor is interrogated simultaneously in, e.g., optical and electrochemical domains. An opportunity to combine the domains within a single sensor is given by optically transparent and electrochemically active transparent conductive oxides (TCOs), such as indium tin oxide (ITO). This work aims to bring understanding of electro-optically modulated lossy-mode resonance (LMR) effect observed for ITO-coated optical fiber sensors. Experimental research supported by numerical modeling allowed for identification of the film properties responsible for performance in both domains, as well as interactions between them. It has been found that charge carrier density in the semiconducting ITO determines the efficiency of the electrochemical processes and the LMR properties. The carrier density boosts electrochemical activity but reduces capability of electro-optical modulation of the LMR. It has also been shown that the carrier density can be tuned by pressure during magnetron sputtering of ITO target. Thus, the pressure can be chosen as a parameter for optimization of electro-optical modulation of the LMR, as well as optical and electrochemical responses of the device, especially when it comes to label-free sensing and biosensing.
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- 2021
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22. The Influence of Lactic Acid Bacteria Fermentation on the Bioactivity of Crayfish (Faxonius limosus) Meat
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Natalia Śmietana, Przemysław Śmietana, Emilia Drozłowska, and Łukasz Łopusiewicz
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crayfish ,Faxonius limosus ,lactic acid bacteria ,bioactive compounds ,fermentation ,biotransformation ,Fermentation industries. Beverages. Alcohol ,TP500-660 - Abstract
In recent years, new raw materials have been sought for use in processing. This category certainly includes invasive crayfish Faxonius limosus. One of the problems associated with their use is their short microbiological shelf life. Therefore, in the research presented here, an attempt was made to ferment crayfish meat with strains of Lactiplantibacillus plantarum, Lacticaseibacillus rhamnosus, Lactobacillus casei, and yogurt culture. The analyses included an evaluation of changes in the microbial quality of the material, the content of free amino acids, reducing sugars, ascorbic acid, and the antioxidant properties of the fermented meat. Changes in the canthaxanthin content and the number of sulfhydryl groups and disulfide bridges were also evaluated. The study showed that carrying out lactic fermentation resulted in a decrease in meat pH (8.00 to 7.35–6.94, depending on the starter culture). Moreover, the meat was characterized by an increase in FRAP (2.99 to 3.60–4.06 mg AAE/g), ABTS (2.15 to 2.85–3.50 μmol Trolox/g), and reducing power (5.53 to 6.28–14.25 μmol Trolox/g). In addition, the study showed a favorable effect of fermentation on the content of sulfhydryl groups in the meat as well as for ascorbic acid content. The results obtained can serve as a starting point for the further development of fermented products based on crayfish meat.
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- 2023
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23. Spray-Drying Impact the Physicochemical Properties and Formation of Maillard Reaction Products Contributing to Antioxidant Activity of Camelina Press Cake Extract
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Emilia Drozłowska, Małgorzata Starowicz, Natalia Śmietana, Urszula Krupa-Kozak, and Łukasz Łopusiewicz
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antioxidant-rich ingredient ,spray-drying ,Camelina sativa ,powdered food ,gluten-free ingredient ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Spray-drying is one of the most popular techniques in the food industry for converting liquid material from a fluid state into a form of dried particles to produce encapsulated or instant products. Instant products are considered as convenient foods; moreover, the goal of encapsulation is to close the bioactive compounds in a shell, preventing them from being affected by environmental factors. The purpose of this study was to examine the influence of spray-drying conditions, in particular three inlet temperatures, on the physicochemical and antioxidant properties of powders obtained from Camelina Press Cake Extract (CPE). The CPE was spray-dried at 140 °C, 160 °C and 180 °C. The solubility, Carr and Hausner Indexes, tapped densities and water activity of the powders were analyzed. The structural changes were also detected using FTIR spectroscopy. Additionally, the characteristics of the initial and reconstituted samples and their rheological properties were evaluated. The antioxidant potential, total polyphenols and flavonoids content, free amino acids, and the Maillard reaction products contents in the spray-dried powders were also evaluated. The results indicate a cascade of changes between the initial and reconstituted samples, and important changes in the bioactive potential of samples. The inlet temperature significantly influenced the solubility, flowability and particle sizes of the powders, as well as Maillard products formation. The results of the rheological measurements illustrate the changes after the reconstitution of extracts. This study indicates the optimal parameters of CPE spray-drying, those that yield favorable physicochemical and functional values, which may open up a promising path for CPE valorization, indicating its potential and the possibilities of its use.
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- 2023
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24. Inferring population structure and genetic diversity of the invasive alien Nootka lupin in Iceland
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Jakub Skorupski, Magdalena Szenejko, Martyna Gruba-Tabaka, Przemysław Śmietana, and Remigiusz Panicz
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biological invasions ,genetic diversity ,its2 ,lupinus nootkatensis ,population structure ,nature conservation ,Environmental sciences ,GE1-350 ,Oceanography ,GC1-1581 - Abstract
Polar and subpolar regions are known for their particular vulnerability and sensitivity to the detrimental effects of non-indigenous species, which is well exemplified by the Nootka lupin (Lupinus nootkatensis) spread in Iceland. Since understanding the population and ecological genetics of invasive alien species offers hope for counteracting harmful biological invasions, the objective of the present study was to investigate interspecific variation in L. nootkatensis in Iceland in relation to a native population in Alaska. Moreover, we aimed to assess whether internal transcribed spacer 2 (ITS2) has sufficient phylogenetic applicability for a large-scale screening of the genetic diversity of a non-indigenous population of this species. This study, which is the first attempt to investigate the genetic diversity of the Nootka lupin in Iceland, included plant samples from eight locations in Iceland and one in Alaska. The analyses included genotyping by sequencing of the 417-nucleotide fragment of the 5.8S ribosomal RNA, ITS2 and part of the large subunit ribosomal RNA (GenBank MT026578-MT026580, MT077004). The main findings showed the presence of five previously unexplained single-nucleotide polymorphisms (SNPs); however, their discriminatory power for Icelandic populations was relatively low, since polymorphism information content (PIC) values ranged from 0.0182 to 0.0526, with average heterozygosity 0.0296. Concomitantly, analysis of multilocus genotypes (MLG) revealed sufficient differences in MLGs variants and their frequency to form genotypic patterns unique for Alaskan and Icelandic populations, revealing an internal genetic structure of the studied group. The proposed SNP panel needs to be supplemented with other nuclear and organellar markers.
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- 2021
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25. Potential of invasive alien top predator as a biomonitor of nickel deposition – the case of American mink in Iceland
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J. Skorupski, P. Śmietana, R. A. Stefánsson, M. von Schmalensee, R. Panicz, A. Nędzarek, P. Eljasik, and M. Szenejko
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bioindicator ,breiðafjörður ,ecotoxicology ,neovison vison ,spleen ,Zoology ,QL1-991 - Abstract
American mink Neovison vison is one of the most harmful non-indigenous species in Iceland and has been proven to be a useful indirect bioindicator and biomonitor for numerous environmental pollutants. Therefore, the main objective of the study was to determine the total nickel concentration in the spleen of 35 females and 30 males obtained from Brokey archipelago and the south coast of Hvammsfjörður (Dalabyggð, Iceland) using graphite furnace atomic absorption spectroscopy. We also assessed the correlation between nickel concentration and selected anatomical and morphological parameters, hypothesising that invasive alien N. vison is a promising candidate species for biomonitoring the deposition of this trace element. The results indicated a substantial variation in nickel concentration in the spleen tissue of examined animals. For males, the maximum concentration exceeded the average level by more than 16 times, and for females by more than 7 times. The correlation coefficient between morphometric features and the level of nickel concentration in the spleen did not show a significant relationship in any of the tested combinations, for all tested animals or for each sex separately. In conclusion, American mink in Iceland can be considered a promising species for qualitative and quantitative assessment of ecosystems in terms of nickel pollution.
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- 2021
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26. Assessment of Aleutian mink disease virus (AMDV) prevalence in feral American mink in Iceland. Case study of a pending epizootiological concern in Europe
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Remigiusz Panicz, Piotr Eljasik, Jakub Skorupski, Przemysław Śmietana, Róbert A. Stefánsson, Menja von Schmalensee, and Magdalena Szenejko
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American mink ,Feral population ,Free-ranging population ,Fulton’s condition factor ,Spleen ,Virus prevalence and spread ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Recurring escapes or deliberate releases and subsequent infiltration or establishment of feral populations by individuals from fur farms have been commonly noted since the beginning of fur industry expansion. Once animals have invaded ecosystems adjacent to source farms escapees can change the demography of the feral populations through hybridization, outbreeding depression, competition and spreading of various pathogens which can decimate wild populations. In our study, we aimed to assess spread of Aleutian mink disease virus (AMDV) in the feral population of American mink (Neovison vison) in Iceland. The additional objective was to elucidate whether basic morpho-anatomical parameters (i.e., Fulton’s condition factor or spleen to body weight ratio) might be used as a preliminary indicator of AMDV infection. Methods American mink (n = 164) were captured by professional hunters in 8 regions of Iceland. The detection of AMDV in the spleen of male and female individuals was based on PCR amplification of an NS1 gene fragment. Results We confirmed AMDV presence in 23.8% (n = 39) of collected samples with no significant difference in infection rate between males and females. Additionally, we revealed that the prevalence of virus in the feral population was higher closer to fur farms. However, the countrywide prevalence and direction of AMDV distribution needs to be further investigated. Comparison of condition indices in non-infected and infected animals showed significant deterioration of body and spleen parameters in the latter group. Therefore, the application of basic measurements of the American mink may be used to evaluate the health status of individuals in terms of pathogen infection. Conclusions The study shed a new light on prevalence and distribution of AMDV in the feral population of American mink in Iceland and the results might be successfully applied to develop models to infer dynamics of various pathogens, even those latently transmitted by disease-free animals.
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- 2021
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27. Electro-Optically Modulated Lossy-Mode ResonanceA New Approach for Label-Free Sensing.
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Śmietana, Mateusz, Burnat, Dariusz, Curda, Pavel, Janaszek, Bartosz, Kieliszczyk, Marcin, Sezemsky, Petr, Koba, Marcin, Stranak, Vitezslav, and Szczepański, Paweł
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- 2024
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28. Genetic differentiation and asymmetric gene flow among Carpathian brown bear (Ursus arctos) populations—Implications for conservation of transboundary populations
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Maciej Matosiuk, Wojciech Śmietana, Magdalena Czajkowska, Ladislav Paule, Jozef Štofik, Diana Krajmerová, Andriy‐Taras Bashta, Stefan Jakimiuk, and Mirosław Ratkiewicz
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brown bear ,Carpathians ,conservation ,genetic structure ,phylogeography ,transboundary populations ,Ecology ,QH540-549.5 - Abstract
Abstract The abundance and distribution of large carnivores in Europe have been historically reduced. Their recovery requires multilevel coordination, especially regarding transboundary populations. Here, we apply nuclear and mitochondrial genetic markers to test for admixture level and its impact on population genetic structure of contemporary brown bears (Ursus arctos) from the Eastern, Southern, and Western Carpathians. Carpathian Mountains (Europe). Nearly 400 noninvasive brown bear DNA samples from the Western (Poland) and Eastern Carpathians (Bieszczady Mountains in Poland, Slovakia, Ukraine) were collected. Together with DNA isolates from Slovakia and Romania, they were analyzed using the set of eight microsatellite loci and two mtDNA regions (control region and cytochrome b). A set of 113 individuals with complete genotypes was used to investigate genetic differentiation across national boundaries, genetic structuring within and between populations, and movement between populations. Transboundary brown bear subpopulations (Slovakia and Poland) did not show significant internal genetic structure, and thus were treated as cohesive units. All brown bears from the Western Carpathians carried mitochondrial haplotypes from the Eastern lineage, while the Western lineage prevailed in the brown bears from the Bieszczady Mountains. Despite similar levels of microsatellite variability, we documented significant differentiation among the studied populations for nuclear markers and mtDNA. We also detected male‐biased and asymmetrical movement into the Bieszczady Mountains population from the Western Carpathians. Our findings suggest initial colonization of the Western Carpathians by brown bears possessing mtDNA from the Eastern lineage. Genetic structuring among populations at microsatellite loci could be a result of human‐mediated alterations. Detected asymmetric gene flow suggests ongoing expansion from more abundant populations into the Bieszczady Mountains and thus supports a metapopulation model. The knowledge concerning this complex pattern can be implemented in a joint Carpathian brown bear management plan that should allow population mixing by dispersing males.
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- 2019
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29. The Effect of Yogurt and Kefir Starter Cultures on Bioactivity of Fermented Industrial By-Product from Cannabis sativa Production—Hemp Press Cake
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Łukasz Łopusiewicz, Katarzyna Waszkowiak, Katarzyna Polanowska, Beata Mikołajczak, Natalia Śmietana, Agnieszka Hrebień-Filisińska, Joanna Sadowska, Kinga Mazurkiewicz-Zapałowicz, and Emilia Drozłowska
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Cannabis sativa ,dairy alternatives ,by-products ,bioactivity ,fermentation ,functional food ,Fermentation industries. Beverages. Alcohol ,TP500-660 - Abstract
Cannabis sativa (hemp) is a plant considered to be abundant in bioactive compounds. The increasing production of hemp oil is leaving considerable amounts of hemp press cakes (HPC), which have not been sufficiently managed so far. One of the directions of development of plant-based food is the use of by-products of the agri-food industry in accordance with the idea of zero waste and the circular economy, so the purpose of this study was to determine the possibility of HPC fermentation using yogurt and kefir cultures and to determine the effect of the type of starter on the properties of the products. In the present study, starter cultures of yogurt (YO 122) and kefir (commercial grains) were used for HPC fermentation. Changes in lactic acid bacteria (LAB) and yeast population, pH, acidity, the content of bioactive compounds by spectrophotometric methods (proteins, amino acids, polyphenols, flavonoids, reducing sugars) and antioxidant activity (DDPH, ABTS, FRAP and reducing power) were determined. The results showed that it was possible to develop high-value beverages based on HPC with high fermentation efficiency: survivability of LAB and yeast (>106 CFU/g) and acidification (pH in a range of 4.82–6.36 and 5.34–6.49 for yogurt and kefir culture, respectively). Moreover, the stability of hemp protein, with its variable free amino acid composition, antioxidant potential and presented changes in polyphenolic content, was observed during storage. The presented results show a new way to manage HPC as an oil industry residue by using it as a raw material for the development of a bioactive food product and illustrate the relationship between applied starter culture, the direction of fermentation and changes in the content of bioactive compounds.
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- 2022
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30. The Biotransformation of Lupine Seeds by Lactic Acid Bacteria and Penicillium camemberti into a Plant-Based Camembert Alternative, and Its Physicochemical Changes during 7 Weeks of Ripening
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Łukasz Łopusiewcz, Natalia Śmietana, Elżbieta Lichwiarska, Kinga Mazurkiewicz-Zapałowicz, Annett Gefrom, and Emilia Drozłowska
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cheese alternatives ,ripening ,lupine ,plant-based foods ,Fermentation industries. Beverages. Alcohol ,TP500-660 - Abstract
In recent years, there has been increasing consumer interest and research into plant-based dairy alternatives, due to the increasingly negative impact of animal products on human health, animal welfare, and the environment. The purpose of this study was to investigate the physicochemical and microbiological changes in a Camembert alternative based on the seeds of sweet lupine (Lupinus angustifolius L cv. ‘Boregine’). After heat treatment and homogenization, the seeds were incubated with lactic acid bacteria (LAB) and Penicillium camemberti mold. After fermentation at room temperature, the samples were stored at 12 °C for 14 days, and then ripened until day 49 at 6 °C. Changes in microbial population, acidity, texture, content of polyphenols, flavonoids, reducing sugars, and free amino acids were monitored. In addition, the antioxidant capacity of the samples during ripening was determined. The results showed that LAB and fungi were able to grow well in the lupine matrix. Initially, a decrease in pH was observed, while in the further stages of ripening, alkalization of the product linked with progressive proteolysis associated with an increase in free amino acid content was noted. Hydrolysis of polysaccharides and an increase in antioxidant activity were observed. This indicates the potential of lupine seeds as a raw material for the development of a new group of plant-based ripened cheese alternatives.
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- 2022
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31. Position Coding
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Aboufadel, Edward, Armstrong, Timothy, and Smietana, Elizabeth
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Computer Science - Information Theory ,Mathematics - Combinatorics ,05B30 ,42C40 ,65T60 ,94A55 - Abstract
A position coding pattern is an array of symbols in which subarrays of a certain fixed size appear at most once. So, each subarray uniquely identifies a location in the larger array, which means there is a bijection of some sort from this set of subarrays to a set of coordinates. The key to Fly Pentop Computer paper and other examples of position codes is a method to read the subarray and then convert it to coordinates. Position coding makes use of ideas from discrete mathematics and number theory. In this paper, we will describe the underlying mathematics of two position codes, one being the Anoto code that is the basis of "Fly paper". Then, we will present two new codes, one which uses binary wavelets as part of the bijection., Comment: 14 pages, 7 figures
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- 2007
32. The effects of parental age difference on the offspring sex and fitness of European blackbirds
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Marta Cholewa, Łukasz Jankowiak, Magdalena Szenejko, Andrzej Dybus, Przemysław Śmietana, and Dariusz Wysocki
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Transgenerational effect ,Senescence ,Trivers-Willard hypothesis ,Male attractiveness ,Parental age ,Good genes hypothesis ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Many studies of birds have indicated that offspring sex ratios can vary with environmental and parental traits. On the basis of long-term research, we first evaluated the possible influence of parental age difference and brood characteristics on offspring sex and fitness in multi-brooded Blackbirds Turdus merula. Methodology The study was conducted in the city-centre Stefan Żeromski Park in Szczecin, NW Poland, where the local population of Blackbirds has been studied since 1996. Data on the offspring sex and fitness were collected in five years, 2005–2007 and 2016–2017. During the breeding season we inspected the study area to locate the pairs’ territories and to track their nests and clutches. Results We found that the overall sex ratio did not differ statistically from 50:50, but that younger females bonded with older mates did tend to produce more sons, probably because of the greater fitness of male descendants. Accordingly, the sons’ breeding success increased with the father’s age, but this relationship was close to non-linear, which may indicate that the transgenerational effect of paternal senescence could negatively affect progeny fitness despite the high-quality of older fathers. Older females mated with younger males produced more daughters, which could have been due to the lesser attractiveness of the males and the mothers’ poorer condition caused by accelerated senescence. We found that neither offspring hatching sequence nor hatching date or clutch sequence were significant for sex determination. Conclusions We consider that in our Blackbird population, parental age could make a more significant contribution to shaping offspring sex and reproductive success.
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- 2021
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33. Black Cumin (Nigella sativa L.) Seed Press Cake as a Novel Material for the Development of New Non-Dairy Beverage Fermented with Kefir Grains
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Łukasz Łopusiewicz, Natalia Śmietana, Daria Paradowska, and Emilia Drozłowska
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black cumin ,Nigella sativa L. ,press cakes ,dairy alternatives ,fermented beverages ,biotransformation ,Biology (General) ,QH301-705.5 - Abstract
In recent years, there has been a growing interest from the food industry in new products that are increasingly desired by consumers because of the functional ingredients they contain. This category certainly includes fermented plant-based beverages, which combine the properties of plant substrates with the beneficial effects of fermentation on human health. In our study, two trial variants containing 20% and 30% black cumin (Nigella sativa L.) seed press cake (BCPC) were inoculated with kefir grain cultures and then incubated at 25 °C for 24 h. The resulting beverages were stored under refrigeration (6 °C) for 28 days. During storage, pH, total free amino acids, reducing sugars, changes in the microbial population, viscosity, textural parameters, and color were measured on days 1, 5, 7, 14, 21, and 28. Throughout the storage period, the number of lactic acid bacteria, as well as yeasts, exceeded the recommended minimum level. Numerous changes in product parameters were observed in the tested beverages as a result of fermentation compared to non-fermented products. This study indicates the possibility of using BCPC as a valuable matrix for the production of a functional kefir-like beverage.
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- 2022
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34. Effect of high added-value components of acid whey on the nutritional and physiological indices of rats
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Małgorzata Wronkowska, Jerzy Juśkiewicz, Zenon Zduńczyk, Józef Warechowski, Maria Soral-Śmietana, and Monika Jadacka
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Acid whey ,Ultrafiltration ,Nanofiltration ,In vivo ,Rats ,Nutrition. Foods and food supply ,TX341-641 - Abstract
The effects of acid whey concentrates after nano- or ultrafiltration on the nutritional and physiological indices of rats were analysed. The ultrafiltration concentrate was characterized by a higher protein and lactoferrin content, and lower lactose content compared to the nanofiltration concentrate. In vivo, a diet incorporating the ultrafiltration concentrate instead of the nanofiltration concentrate seemed to be more beneficial to rats in terms of a good growth rate and utilization of the diet, higher concentration of butyric acid and lower concentration of putrefactive short chain fatty acids in the caecum, increased bacterial enzyme activities in the caecum, lower blood glucose levels and reduced levels of triglycerides, and greater antioxidant capacity of blood serum. Both acid whey concentrates fulfilled the recommendations for powder intended for direct consumption or further processing in food production and showed potential health benefits.
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- 2018
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35. Spiny-Cheek Crayfish, Faxonius limosus (Rafinesque, 1817), as an Alternative Food Source
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Natalia Śmietana, Remigiusz Panicz, Małgorzata Sobczak, Przemysław Śmietana, and Arkadiusz Nędzarek
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aquatic food ,freshwater crayfish ,meat colour ,nutrient requirements ,sensory analysis ,structure ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
The aim of the study was to present a comprehensive characterisation of crayfish meat, which is crucial to assess its potential usefulness in the food industry. To this end, we assessed the yield, basic chemical composition (protein, fat, minerals), nutritional value (amino acid and fatty acid profiles, essential amino acid index (EAAI), chemical score of essential amino acids (CS), hypocholesterolaemic/hypercholesterolaemic ratio (h/H), atherogenicity (AI) and thrombogenicity (TI) indices), as well as culinary value (lab colour, texture, sensory characteristics, structure) of the meat of spiny-cheek crayfish (Faxonius limosus) (n = 226) from Lake Sominko (Poland) harvested in May–September 2017. Crayfish meat, especially that from the abdomen, was shown to have high nutritional parameters. It is lean (0.26% of fat), with a favourable fatty acid profile and a very high quality of fat (PUFA (sum of polyunsaturated fatty acids):SFA (sum of saturated fatty acids), n-6/n-3, h/H, AI, TI) and protein (high CS and EAAI). It is also a better source of Ca, K, Mg, Na, P, and Cu than meat from slaughter animals. Hence, crayfish meat can be an alternative to livestock meat in the human diet. Owing to its culinary value (delicateness, weak game flavour, and odour), it meets the requirements of the most demanding consumers, i.e., children and older people.
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- 2020
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36. Validation of Real-time PCR Reference Genes of Muscle Metabolism in Harvested Spiny-Cheek Crayfish (Faxonius limosus) Exposed to Seasonal Variation
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Natalia Śmietana, Remigiusz Panicz, Małgorzata Sobczak, Piotr Eljasik, and Przemysław Śmietana
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ferritin ,endogenous control genes ,freshwater crayfish ,molting ,abdomen muscles ,troponin c ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
Real-time quantitative reverse transcription PCR (RT-qPCR) is a sensitive and broadly used technique of assessing gene activity. To obtain a reliable result, stably expressed reference genes are essential for normalization of transcripts in various samples. To our knowledge, this is the first systematic analysis of reference genes for normalization of RT-qPCR data in spiny-cheek crayfish (Faxonius limosus). In this study, expression of five candidate reference genes (actb, β-actin; gapdh, glyceraldehyde-3-phosphate dehydrogenase; eif, eukaryotic translation initiation factor 5a; ef-1α, elongation factor-1α; and tub, α-tubulin) in muscle samples from male and female F. limosus in spring and autumn was analyzed. Additionally, the most stable reference genes were used for accurate normalization of five target genes, i.e., tnnc, troponin c; ak, arginine kinase; fr, ferritin; ccbp-23, crustacean calcium-binding protein 23; and actinsk8, skeletal muscle actin 8. Results obtained using the geNorm and NormFinder algorithms showed high consistency, and differences in the activity of the selected actb with eif genes were successfully identified. The spring and autumn activities of the target genes (except ak) in the muscle tissue of males and females differed significantly, showing that both sexes are immensely involved in an array of breeding behaviors in spring, and females intensively recover in the autumn season. Characterization of first reference genes in spiny-cheek crayfish will facilitate more accurate and reliable expression studies in this key species.
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- 2020
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37. Genetic diversity in natural populations of noble crayfish (Astacus astacus L.) in north-western Poland on the basis of combined SSR and AFLP data
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Remigiusz Panicz, Łukasz Napora-Rutkowski, Sławomir Keszka, Lidia Skuza, Magdalena Szenejko, and Przemysław Śmietana
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Conservation genetics ,Microsatellite marker ,Restoration ,Genetic differentiation ,Species extinction ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Conservation of noble crayfish (Astacus astacus) populations is becoming particularly important since the number of individuals is rapidly declining across the distribution range of the species in Europe. Five crayfish populations in northwestern Poland have been constantly monitored for two decades. However, the genetic structure of these populations has not been analysed, although this information is important to devise effective conservation strategies. Methods Noble crayfish were collected in the autumn of 2014 by scuba diving in Lakes Graniczne, Babinki, Biwakowe, Sęki and Kwisno, all of which are situated in the Bytów Lakeland of northwestern Poland. Genetic diversity of the five populations was assessed based on allele variability in nine SSR regions and six AFLP primer combinations. Results Microsatellite results analysed with AMOVA showed that the diversity between populations corresponds to 18% of total variability, which was confirmed by similar results obtained using AFLP. Additionally, significant genetic diversity was revealed by high average FST values. All of the studied crayfish populations significantly deviated from the expected Hardy–Weinberg genetic equilibrium and were characterised by negative values of inbreeding coefficient (FIS). Discussion The invariably negative inbreeding coefficients (FIS) suggest a low number of mating individuals, a possible consequence of the phenomenon known as genetic bottleneck. However, additional comprehensive analyses are needed to assess the genetic structure, origin and vulnerability of the remaining populations of noble crayfish in the Bytów Lakeland of northwestern Poland, which have high conservation value and are particularly important as a live genetic bank for breeding and restitution purposes.
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- 2019
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38. The influence of environmental factors on water mite assemblages (Acari, Hydrachnidia) in a small lowland river: an analysis at different levels of organization of the environment
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Zawal, Andrzej, Stryjecki, Robert, Stępień, Edyta, Buczyńska, Edyta, Buczyński, Paweł, Czachorowski, Stanisław, Pakulnicka, Joanna, and Śmietana, Przemysław
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- 2017
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39. Long-Period Gratings and Microcavity In-Line Mach Zehnder Interferometers as Highly Sensitive Optical Fiber Platforms for Bacteria Sensing
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Tinko Eftimov, Monika Janik, Marcin Koba, Mateusz Śmietana, Predrag Mikulic, and Wojtek Bock
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optical fiber sensors ,label-free biosensing ,bacteria detection ,long-period gratings ,microcavity Mach-Zehnder interferometers ,Chemical technology ,TP1-1185 - Abstract
Selected optical fiber sensors offer extraordinary sensitivity to changes in external refractive (RI), which make them promising for label-free biosensing. In this work the most sensitive ones, namely long-period gratings working at (DTP-LPG) and micro-cavity in-line Mach-Zehnder interferometers (µIMZI) are discussed for application in bacteria sensing. We describe their working principles and RI sensitivity when operating in water environments, which is as high as 20,000 nm/RIU (Refractive index unit) for DTP-LPGs and 27,000 nm/RIU for µIMZIs. Special attention is paid to the methods to enhance the sensitivity by etching and nano-coatings. While the DTP-LPGs offer a greater interaction length and sensitivity to changes taking place at their surface, the µIMZIs are best suited for investigations of sub-nanoliter and picoliter volumes. The capabilities of both the platforms for bacteria sensing are presented and compared for strains of Escherichia coli, lipopolysaccharide E. coli, outer membrane proteins of E. coli, and Staphylococcus aureus. While DTP-LPGs have been more explored for bacteria detection in 102–106 Colony Forming Unit (CFU)/mL for S. aureus and 103–109 CFU/mL for E. coli, the µIMZIs reached 102–108 CFU/mL for E. coli and have a potential for becoming picoliter bacteria sensors.
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- 2020
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40. Combined Long-Period Fiber Grating and Microcavity In-Line Mach–Zehnder Interferometer for Refractive Index Measurements with Limited Cross-Sensitivity
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Monika Janik, Marcin Koba, Krystian Król, Predrag Mikulic, Wojtek J. Bock, and Mateusz Śmietana
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Mach–Zehnder interferometer (MZI) ,long-period grating (LPG) ,optical fiber sensors ,refractive index sensing ,femtosecond laser micromachining ,thin films ,Chemical technology ,TP1-1185 - Abstract
This work discusses sensing properties of a long-period grating (LPG) and microcavity in-line Mach–Zehnder interferometer (µIMZI) when both are induced in the same single-mode optical fiber. LPGs were either etched or nanocoated with aluminum oxide (Al2O3) to increase its refractive index (RI) sensitivity up to ≈2000 and 9000 nm/RIU, respectively. The µIMZI was machined using a femtosecond laser as a cylindrical cavity (d = 60 μm) in the center of the LPG. In transmission measurements for various RI in the cavity and around the LPG we observed two effects coming from the two independently working sensors. This dual operation had no significant impact on either of the devices in terms of their functional properties, especially in a lower RI range. Moreover, due to the properties of combined sensors two major effects can be distinguished—sensitivity to the RI of the volume and sensitivity to the RI at the surface. Considering also the negligible temperature sensitivity of the µIMZI, it makes the combination of LPG and µIMZI sensors a promising approach to limit cross-sensitivity or tackle simultaneous measurements of multiple effects with high efficiency and reliability.
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- 2020
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41. Immunosensor Based on Long-Period Fiber Gratings for Detection of Viruses Causing Gastroenteritis
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Marta Janczuk-Richter, Beata Gromadzka, Łukasz Richter, Mirosława Panasiuk, Karolina Zimmer, Predrag Mikulic, Wojtek J. Bock, Sebastian Maćkowski, Mateusz Śmietana, and Joanna Niedziółka Jönsson
- Subjects
virus detection ,norovirus ,virus-like particle ,label-free biosensor ,optical fiber sensor ,long-period fiber gratings ,Chemical technology ,TP1-1185 - Abstract
Since the norovirus is the main cause of acute gastroenteritis all over the world, its fast detection is crucial in medical diagnostics. In this work, a rapid, sensitive, and selective optical fiber biosensor for the detection of norovirus virus-like particles (VLPs) is reported. The sensor is based on highly sensitive long-period fiber gratings (LPFGs) coated with antibodies against the main coat protein of the norovirus. Several modification methods were verified to obtain reliable immobilization of protein receptors on the LPFG surface. We were able to detect 1 ng/mL norovirus VLPs in a 40-min assay in a label-free manner. Thanks to the application of an optical fiber as the sensor, there is a possibility to increase the user’s safety by separating the measurement point from the signal processing setup. Moreover, our sensor is small and light, and the proposed assay is straightforward. The designed LPFG-based biosensor could be applied in both fast norovirus detection and in vaccine testing.
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- 2020
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42. The Concept Of A Sustainable Approach To Corporate Real Estate Management
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Ziemba Ewa, Śmietana Katarzyna, Ramian Tomasz, and Kania Krzysztof
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sustainable development ,corporate social responsibility ,corporate real estate ,real estate management ,g3 ,m14 ,Real estate business ,HD1361-1395.5 - Abstract
This paper is conceptual in nature and presents the assumptions of a holistic approach to corporate real estate management. The approach is based on the imperative of sustainability, which has become a determinant of the proposed Sustainable Corporate Real Estate Management (SCREM) model. Moreover, the authors indicate that in addition to the presence of the sustainability imperative, corporate real estate management requires the integration and formalization of knowledge about the concepts of corporate real estate management (CREM) with those of corporate social responsibility (CSR). This approach is intended to enable the identification and improvement of real estate management processes and, as a result, contribute to more efficient and effective corporate real estate management and continuous and flexible development of enterprises, as well as boosting economic growth and building prosperity for present and future generations.
- Published
- 2015
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43. Live E. coli bacteria label-free sensing using a microcavity in-line Mach-Zehnder interferometer
- Author
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Janik, Monika, Koba, Marcin, Celebańska, Anna, Bock, Wojtek J., and Śmietana, Mateusz
- Published
- 2018
- Full Text
- View/download PDF
44. Epigeic beetles (Coleoptera) of the Lake Świdwie nature reserve
- Author
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Łukasz Baran, Brygida Radawiec, Andrzej Zawal, Anna Nowak, and Przemysław Śmietana
- Subjects
Coleoptera ,fauna ,species composition ,Świdwie nature reserve ,Ecology ,QH540-549.5 - Abstract
The data presented concern preliminary results of faunistic research carried out on the epigeic beetle fauna in the Lake Świdwie nature reserve, NW Poland (UTM VV53). Fourteen pitfall traps were placed in four different habitats in the reserve. A total of 957 specimens were collected belonging to 83 species and 16 families: Byrrhidae, Carabidae, Catopidae, Curculionidae, Dermestidae, Dryopidae, Elateridae, Eucinetidae, Hydrophilidae, Geotrupidae, Leiodidae, Limnichidae, Silphidae, Staphylinidae, Scarabaeidae, Tenebrionidae. Representatives of Staphylinidae, Hydrophilidae and Curculionidae were determinate to the family level only.
- Published
- 2017
- Full Text
- View/download PDF
45. Preliminary data on the epigeic beetle fauna (Coleoptera) of the Golczewskie Uroczysko Nature Reserve
- Author
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Brygida Radawiec, Łukasz Baran, Przemysław Śmietana, Ewa Sarnacka, and Andrzej Zawal
- Subjects
epigeic beetles ,Coleoptera: Catopidae ,Carabidae ,Elateridae ,Geotrupidae ,Silphidae ,Ecology ,QH540-549.5 - Abstract
A study was conducted in May–August 2006 in the Golczewskie Uroczysko Nature Reserve, UTM WV06, using 10 Barber traps containing ethylene glycol. A total of 2,141 beetles were collected, belonging to 58 species from 7 families. The epigeic beetle fauna of the reserve comprised mainly forest, grassland and peatland species. Stable populations of three ground beetle species under partial protection, Carabus convexus, Carabus coriaceus and Carabus glabratus, are present in the forest habitats. The most ecologically valuable species include hygrophilous peatland species: Agonum ericeti (VU), Pterostichus rhaeticus, Agonum hypocrita, Limodromus krynickii, Oodes helopioides (VU), and the rare click beetle Paraphotistus impressus, all of which have poorly known ecological preferences.
- Published
- 2017
- Full Text
- View/download PDF
46. Assessing differences in connectivity based on habitat versus movement models for brown bears in the Carpathians
- Author
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Ziółkowska, Elżbieta, Ostapowicz, Katarzyna, Radeloff, Volker C., Kuemmerle, Tobias, Sergiel, Agnieszka, Zwijacz-Kozica, Tomasz, Zięba, Filip, Śmietana, Wojciech, and Selva, Nuria
- Published
- 2016
- Full Text
- View/download PDF
47. Water mites (Acari, Hydrachnidia) of water bodies of the Krąpiel River valley: interactions in the spatial arrangement of a river valley
- Author
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Stryjecki, Robert, Zawal, Andrzej, Stępień, Edyta, Buczyńska, Edyta, Buczyński, Paweł, Czachorowski, Stanisław, Szenejko, Magdalena, and Śmietana, Przemysław
- Published
- 2016
- Full Text
- View/download PDF
48. Rating in the Assessment of Investment Property
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Śmietana Katarzyna, Konowalczuk Jan, and Maszczyk Anna
- Subjects
property rating ,property and market rating ,investment property ,g11 ,r30 ,Real estate business ,HD1361-1395.5 - Abstract
The implementation of rating procedures is associated with searching for tools that provide an objective and standardized assessment of investment risk. For this reason, rating is an important and often essential element of investment decision-making processes which determines the development of the capital market, including the real estate investment market. In the investment property market, not only does rating provide transparency of property risk, but it can also be used for real estate portfolio analysis, investment controlling, and the analysis of factors determining investment decisions (ESV 2012).
- Published
- 2014
- Full Text
- View/download PDF
49. Optical Properties of Buffers and Cell Culture Media for Optofluidic and Sensing Applications
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Van Thuy Hoang, Grzegorz Stępniewski, Karolina H. Czarnecka, Rafał Kasztelanic, Van Cao Long, Khoa Dinh Xuan, Liyang Shao, Mateusz Śmietana, and Ryszard Buczyński
- Subjects
optical properties ,cell culture media ,optofluidics ,optical sensing ,label-free biosensing ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Interactions between light and various cells in cultures, such as bacteria or mammalian cells, are widely applied for optical sensors and optofluidic systems. These microorganisms need to be kept in proper aqueous media, referred to as buffers or cell culture media, that are required, respectively, for stable storage or delivering biochemical nutrients for their growth. When experiments or numerical analyses on optical devices are performed, the properties of these media are usually considered to be similar to those of pure water, with negligible influence of biochemical compounds on the medium’s optical properties. In this work, we investigated the transmission, material dispersion, and scattering properties of selected and widely used buffers and cell culture media. We show that the optical properties of these media may significantly vary from those of water. Well-defined properties of buffers and cell culture media are essential for proper design of various optical sensing or future optofluidic systems dealing with biological structures.
- Published
- 2019
- Full Text
- View/download PDF
50. Capability for Fine Tuning of the Refractive Index Sensing Properties of Long-Period Gratings by Atomic Layer Deposited Al2O3 Overlays
- Author
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Mateusz Śmietana, Marcin Myśliwiec, Predrag Mikulic, Bartłomiej S. Witkowski, and Wojtek J. Bock
- Subjects
optical fiber sensors ,refractive index sensor ,long-period gratings (LPG) ,Atomic Layer Deposition (ALD) ,thin films ,optical properties ,aluminum oxide (Al2O3) ,Chemical technology ,TP1-1185 - Abstract
This work presents an application of thin aluminum oxide (Al2O3) films obtained using atomic layer deposition (ALD) for fine tuning the spectral response and refractive-index (RI) sensitivity of long-period gratings (LPGs) induced in optical fibers. The technique allows for an efficient and well controlled deposition at monolayer level (resolution ~ 0.12 nm) of excellent quality nano-films as required for optical sensors. The effect of Al2O3 deposition on the spectral properties of the LPGs is demonstrated experimentally and numerically. We correlated both the increase in Al2O3 thickness and changes in optical properties of the film with the shift of the LPG resonance wavelength and proved that similar films are deposited on fibers and oxidized silicon reference samples in the same process run. Since the thin overlay effectively changes the distribution of the cladding modes and thus also tunes the device’s RI sensitivity, the tuning can be simply realized by varying number of cycles, which is proportional to thickness of the high-refractive-index (n > 1.6 in infrared spectral range) Al2O3 film. The advantage of this approach is the precision in determining the film properties resulting in RI sensitivity of the LPGs. To the best of our knowledge, this is the first time that an ultra-precise method for overlay deposition has been applied on LPGs for RI tuning purposes and the results have been compared with numerical simulations based on LP mode approximation.
- Published
- 2013
- Full Text
- View/download PDF
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