12,467 results on '"Çağatay A"'
Search Results
2. Extrahepatic Intra-abdominal Hydatid Cyst Detected Incidentally After Trauma: A Case Report
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Çağatay Afşarlar, Gül Doğan, Hülya İpek, Nurcan Coşkun, Hande Kahraman, and Mehmet Metin
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trauma ,cystic mass ,hydatid cyst ,extrahepatic ,Medicine - Abstract
Hydatid cyst is a parasitic disease frequently encountered in the liver and lungs, caused by the larval form of Echinococcus granulosus. Occasionally, hydatid cysts can be seen in the spleen, kidney, heart, bone, ovaries and peritoneal cavity. We presented a case of extrahepatic intra-abdominal hydatid cyst, which we have detected incidentally in an eight-year-old girl who was investigated for post-traumatic abdominal pain. Radiologic examination of the patient showed a midline cystic mas including septations superior to the bladder, and mesenteric cyst, ovarian mass and hydatid cyst were considered for differential diagnosis. The indirect hemagglutination (IHA) test result of the patient was negative (
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- 2024
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3. Transmedya hikâyeciliği kapsamında buz devri (the ice age) evreninin incelenmesi
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Çağatay Akdoğan
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transmedya ,transmedya hikâyeciliği ,pazarlama i̇letişimi ,transmedia ,transmedia storytelling ,marketing communications ,Finance ,HG1-9999 - Abstract
Tüketicilerin izleyici konumundan üreten tüketici konumuna geçişi gibi pazarlama iletişim sürecini derinden etkileyen gelişmeler neticesinde transmedya hikâyeciliği kendine önemli bir yer edinmiştir. Hikâyelerin kendi evrenlerinin dışında farklı mecralarda, farklı bakış açılarıyla devam ettirilmesi; izleyicilerin katılımı ve paylaşımına olanak sağlaması transmedya hikâyeciliğinin temellerini oluşturmaktadır. Araştırma nitel bir çalışma özelliğine sahiptir. Araştırmada örnekleme yöntemi olarak amaçlı örnekleme yöntemlerinden ölçüt örnekleme yöntemi seçilmiş, bu kapsamda araştırma örneği Buz Devri Anlatısı (The Ice Age) olarak belirlenmiştir. Bu çalışmada transmedya hikâyeciliğinin yedi temel kriterinin Buz Devri açısından değerlendirilmesi amaçlanmaktadır. Buz Devri evreni yaklaşık yirmi yıllık süreç içinde yalnızca sinema filmi olarak kalmamış, seyirciye ulaşma noktasında pek çok farklı mecrada ve pek çok farklı hikâyeyle anlatısına devam etmiştir. Araştırma kapsamında yapılan incelemeler sonucunda ana hikâye evreni ve onun uzantıları olan kısa filmlerin, videoların, mobil uygulamalar ve oyunların, gösterilerin, tiyatroların ve sosyal medya hesaplarının pek çok mecrada yer aldığı görülmektedir. Buz Devri evreni transmedya hikâye anlatımı bakımından incelendiğinde, izleyicilerin farklı mecralara geçişinin sağlandığı, bu mecralarda hikâyeyi deneyimleyebildikleri ve bu deneyimleri diğer izleyicilerle paylaşabildikleri görülmektedir. Bunun yanında hikâye evreninin farklı karakterlerle, farklı evrenlerde ve farklı bakış açılarıyla genişletildiği ortaya çıkmaktadır. Buz Devri evreni yedi ilke çerçevesinde incelendiğinde, araştırma sonucunda bu ilkelerin başarıları bir şekilde uygulandığı ve Buz Devri evreninin transmedya hikâyeciliği için önemli bir örnek olduğu değerlendirilmektedir.
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- 2022
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4. The relationship between systemic immune inflammation index and survival in patients with metastatic renal cell carcinomatreated withtyrosine kinase inhibitors
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Kadriye Bir Yücel, Emre Yekedüz, Serdar Karakaya, Deniz Tural, İsmail Ertürk, Cihan Erol, Özlem Ercelep, Nihan Şentürk Öztaş, Çağatay Arslan, Gökhan Uçar, Ahmet Küçükarda, Özlem Nuray Sever, Saadettin Kılıçkap, Orçun Can, Satı Coşkun Yazgan, Berna Öksüzoğlu, Nuri Karadurmuş, Mehmet Ali Şendur, and Yüksel Ürün
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Medicine ,Science - Abstract
Abstract This study aims to investigate the prognostic value of the systemic immune-inflammation index (SII)and its impact on survival in patients with metastatic renal cell carcinoma (mRCC). A total of 706patients with mRCC treated with tyrosine kinase inhibitors (TKIs)between January 2007 and June 2020 (i.e., sunitinib, pazopanib) were included in this study. SII was calculated in 621 patients with the following formula:[neutrophil (cellsx109/L) x platelet (cellsx109/L)] / lymphocyte (cellsx109/L).All patients were classified into SII-high and SII-low groups based on the cut-off value of SII at 756, which was the median SII level of our study group. The minimal follow-up duration was 10 months in all cohorts. The median age of patients was 60 (interquartile range (IQR):53–67) years. Three out of four patients were male. The majority of patients (85.7%) had clear cell histology, and sarcomatoid differentiation was observed in 16.9% of all patients. There were 311 and 310 patients in the SII-low and SII-high groups, respectively. In general, baseline characteristics were similar in each group. However, the rate of patients treated with sunitinib (63.3% vs. 49.0%, p
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- 2022
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5. Trombolitik tedavi alan ve mekanik trombektomi uygulanan akut iskemik inmeli hastalarda angio-seal kullanımının güvenirliği ve etkinliği
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Çağatay Andiç, Mustafa Mazıcan, İsmail Karluka, and Anıl Tanburoğlu
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trombolitik tedavi ,i̇nme ,angio-seal ,thrombolytic therapy ,stroke ,Medicine (General) ,R5-920 - Abstract
Amaç: Bu çalışmada, köprüleyici intravenöz trombolitik tedavi uygulanıp ardından mekanik trombektomi (MT) prosedürü uygulanan hastalarda, femoral arter giriş yerinin, Angio-Seal Vasküler Kapatma Cihazı kullanılarak kapatılmasının etkinliğini ve güvenirliğini değerlendirilmesi amaçlanmıştır.. Gereç ve Yöntem: Bu retrospektif, gözlemsel çalışma, Eylül 2018- Eylül 2021 tarihleri arasında akut iskemik inme nedeniyle başvurmuş, köprüleyici tPA (doku plazminojen aktivatörü) sonrasında mekanik trombektomi işlemi gerçekleştirilmiş ve femoral arter giriş yerleri Angio-Seal ile kapatılan toplam 97 hasta çalışmaya dahil edilerek gerçekleştirilmiştir. Temel demografik veriler, eşlik eden risk faktörleri, major ve minör komplikasyon oranlarının, kategorik değişkenlere ait frekans dağılımları ile nicel verilere ait tanımlayıcı istatistikler hesaplanarak kaydedilmiştir. Bulgular: Hastaların %96,9'unda major komplikasyon ve %97,9'unda minör komplikasyon olmadığı bulunmuştur. Tüm hastalarda kasık bölgesinde başarılı hemostaz sağlanmıştır. Major komplikasyonlar, 1 (%1) psödo-anevrizma, 1 (%1) kasık girim bölgesinde enfeksiyon, 1 (%1) Angio-Seal yerleştirmede başarısızlık olarak kaydedilmiştir. 6 Fr (French) Angio-Seal kullanılanlarda %98,2’sinde ve 8 Fr Angio-Seal kullanılanların %95,1’inde majör komplikasyon görülmemiştir. Sonuç: Köprüleyici tPA kullanılan ve MT işlemi gerçekleştirilen akut iskemik inmeli hastalarda, kasık hemostazının sağlanmasında Angio-Seal kullanımı, geniş çaplı arteriotomilerde dahil olmak üzere etkili ve güvenli bir yöntemdir.
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- 2022
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6. Perspectives and Knowledge about Fertility Preservation Strategies among Female Cancer Patients in Turkey
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Volkan Emirdar, Volkan Karataşli, Ferruh Acet, Gulin Okay, Funda Gode, Alaattin Karabulut, and Çağatay Arslan
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Medicine - Abstract
Objectives. To evaluate the knowledge level and perspectives of female cancer patients regarding fertility preservation techniques before gonadotoxic treatment. Material and Methods. This was a prospective observational survey-based study conducted between 2016 and 2020 in Izmir Economy University Medical Park Hospital. A total of 150 female cancer patients aged 18–42 years were included. The participants completed a 17-item questionnaire, developed by the research team to evaluate their knowledge and perspectives on fertility preservation techniques. Results. The mean age of the patients was 39.5 ± 4.9 years. Only 64.7% of the patients were referred to fertility counseling by a gynecologist, while 72.6% of the patients knew of the risk of infertility after cancer treatment. There was a significant correlation between the health status and cancer stage of the patient (p=0.003). The estimated future chance of becoming pregnant spontaneously or through fertility preservation techniques was significantly higher in patients with a higher education level (p=0.041 or 0.008, respectively). Satisfaction with the counseling process was reported as high or low by 66.7% or 20% of the patients, respectively. Conclusions. The rate of referral of reproductive-age cancer patients to fertility preservation counseling is still not satisfactory. Education level was the only variable significantly associated with a motivation to become pregnant after cancer treatment, either spontaneously or through fertility preservation techniques.
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- 2023
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7. Enzalutamide versus Abiraterone Acetate as first-line treatment of castration resistant metastatic prostate cancer in geriatric (≥75) patients
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Ali Alkan, Zeynep Gülsüm Güç, Mustafa Gürbüz, Güliz Özgün, Serkan Değirmencioğlu, Mutlu Doğan, Tuğba Akın Telli, Özge Keskin, Çağatay Arslan, Burak Bilgin, Sema Sezgin Göksu, Hacer Demir, Elif Berna Köksoy, Osman Köstek, İsmail Ertürk, Teoman Şakalar, Arzu Yaşar, Görkem Türkkan, Büşra Kasım, Aziz Karaoğlu, Berna Çakmak Öksüzoğlu, Fulden Yumuk, Mehmet Ali Şendur, Hasan Şenol Coşkun, İrfan Çiçin, Nuri Karadurmuş, Özgür Tanrıverdi, Hakan Akbulut, and Yüksel Ürün
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metastatic castration-resistant prostate cancer ,enzalutamide ,abiraterone acetate ,elderly ,Medicine (General) ,R5-920 - Abstract
Introduction: The efficacy and tolerability of Enzalutamide and Abiraterone Acetate have been reported in elderly patients with metastatic castration resistant prostate cancer (mCRPC). However, there is no randomized study directly comparing antitumor effects between these 2 agents in geriatric patients. We aimed to evaluate the efficacy of Enzalutamide (ENZA) and Abiraterone Acetate (AA) as a first-line treatment of mCRPC in elderly patients. Materials and methods: The geriatric patients (≥75 years of age) with a diagnosis of mCRPC and treated with first-line ENZA or AA were included. The impacts of clinical parameters and treatment modalities on overall survival (mOS) were analyzed retrospectively and Cox regression analysis was performed. Results: One hundred thirty-four mCRPC patients (77 in AA, 57 in ENZA), with a median age of 81 (75–93) were analyzed. The patient and disease characteristics were similar between arms. While there were more grade 1–2 toxicities in AA arm (45.5% vs 17.5%, P = 0.001), the discontinuation due to toxicity was similar between groups (8.5% vs 5.9%, P = 0.81). The mOS was 18.0 months (95% CI, 15.2–20.7) in AA, and 20.0 months (95% CI, 4.4–35.5) in ENZA arm (P = 0.47). In multivariate analysis, high Gleason score (≥8) (HR: 2.0 (95% CI, 1.1–3.4), P = 0.009) and high initial PSA values (≥100 ng/mL) (HR: 2.6 (95% CI, 1.5–4.8), P = 0.001) were poor prognostic factors. The choice of AA vs ENZA was insignificant as a predictor of OS (HR: 0.87 (95% CI, 0.48–1.56), P = 0.65). Conclusion: In the first-line treatment of mCRPC in elderly (≥75) patients, AA and ENZA showed similar results in terms of mPFS and mOS. The clinical impacts of second-generation androgen receptor pathway inhibitors in the elderly population should be tested in prospective randomized studies.
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- 2021
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8. LightVA: Lightweight Visual Analytics with LLM Agent-Based Task Planning and Execution
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Zhao, Yuheng, Wang, Junjie, Xiang, Linbin, Zhang, Xiaowen, Guo, Zifei, Turkay, Cagatay, Zhang, Yu, and Chen, Siming
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Computer Science - Human-Computer Interaction - Abstract
Visual analytics (VA) requires analysts to iteratively propose analysis tasks based on observations and execute tasks by creating visualizations and interactive exploration to gain insights. This process demands skills in programming, data processing, and visualization tools, highlighting the need for a more intelligent, streamlined VA approach. Large language models (LLMs) have recently been developed as agents to handle various tasks with dynamic planning and tool-using capabilities, offering the potential to enhance the efficiency and versatility of VA. We propose LightVA, a lightweight VA framework that supports task decomposition, data analysis, and interactive exploration through human-agent collaboration. Our method is designed to help users progressively translate high-level analytical goals into low-level tasks, producing visualizations and deriving insights. Specifically, we introduce an LLM agent-based task planning and execution strategy, employing a recursive process involving a planner, executor, and controller. The planner is responsible for recommending and decomposing tasks, the executor handles task execution, including data analysis, visualization generation and multi-view composition, and the controller coordinates the interaction between the planner and executor. Building on the framework, we develop a system with a hybrid user interface that includes a task flow diagram for monitoring and managing the task planning process, a visualization panel for interactive data exploration, and a chat view for guiding the model through natural language instructions. We examine the effectiveness of our method through a usage scenario and an expert study.
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- 2024
9. Adaptation Odyssey in LLMs: Why Does Additional Pretraining Sometimes Fail to Improve?
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Öncel, Fırat, Bethge, Matthias, Ermis, Beyza, Ravanelli, Mirco, Subakan, Cem, and Yıldız, Çağatay
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
In the last decade, the generalization and adaptation abilities of deep learning models were typically evaluated on fixed training and test distributions. Contrary to traditional deep learning, large language models (LLMs) are (i) even more overparameterized, (ii) trained on unlabeled text corpora curated from the Internet with minimal human intervention, and (iii) trained in an online fashion. These stark contrasts prevent researchers from transferring lessons learned on model generalization and adaptation in deep learning contexts to LLMs. To this end, our short paper introduces empirical observations that aim to shed light on further training of already pretrained language models. Specifically, we demonstrate that training a model on a text domain could degrade its perplexity on the test portion of the same domain. We observe with our subsequent analysis that the performance degradation is positively correlated with the similarity between the additional and the original pretraining dataset of the LLM. Our further token-level perplexity observations reveals that the perplexity degradation is due to a handful of tokens that are not informative about the domain. We hope these findings will guide us in determining when to adapt a model vs when to rely on its foundational capabilities., Comment: Accepted to EMNLP 2024 Main Conference
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- 2024
10. Tactile Perception of Electroadhesion: Effect of DC versus AC Stimulation and Finger Moisture
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AliAbbasi, Easa, Muzammil, Muhammad, Sirin, Omer, Lefèvre, Philippe, Martinsen, Ørjan Grøttem, and Basdogan, Cagatay
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Computer Science - Human-Computer Interaction - Abstract
Electroadhesion has emerged as a viable technique for displaying tactile feedback on touch surfaces, particularly capacitive touchscreens found in smartphones and tablets. This involves applying a voltage signal to the conductive layer of the touchscreen to generate tactile sensations on the fingerpads of users. In our investigation, we explore the tactile perception of electroadhesion under DC and AC stimulations. Our tactile perception experiments with 10 participants demonstrate a significantly lower voltage detection threshold for AC signals compared to their DC counterparts. This discrepancy is elucidated by the underlying electro-mechanical interactions between the finger and the voltage-induced touchscreen and considering the response of mechanoreceptors in the fingerpad to electrostatic forces generated by electroadhesion. Additionally, our study highlights the impact of moisture on electroadhesive tactile perception. Participants with moist fingers exhibited markedly higher threshold levels. Our electrical impedance measurements show a substantial reduction in impedance magnitude when sweat is present at the finger-touchscreen interface, indicating increased conductivity. These findings not only contribute to our understanding of tactile perception under electroadhesion but also shed light on the underlying physics. In this regard, the results of this study extend beyond mobile devices to encompass other applications of this technology, including robotics, automation, space missions, and textiles.
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- 2024
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11. BEAVER: An Enterprise Benchmark for Text-to-SQL
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Chen, Peter Baile, Wenz, Fabian, Zhang, Yi, Kayali, Moe, Tatbul, Nesime, Cafarella, Michael, Demiralp, Çağatay, and Stonebraker, Michael
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Databases - Abstract
Existing text-to-SQL benchmarks have largely been constructed using publicly available tables from the web with human-generated tests containing question and SQL statement pairs. They typically show very good results and lead people to think that LLMs are effective at text-to-SQL tasks. In this paper, we apply off-the-shelf LLMs to a benchmark containing enterprise data warehouse data. In this environment, LLMs perform poorly, even when standard prompt engineering and RAG techniques are utilized. As we will show, the reasons for poor performance are largely due to three characteristics: (1) public LLMs cannot train on enterprise data warehouses because they are largely in the "dark web", (2) schemas of enterprise tables are more complex than the schemas in public data, which leads the SQL-generation task innately harder, and (3) business-oriented questions are often more complex, requiring joins over multiple tables and aggregations. As a result, we propose a new dataset BEAVER, sourced from real enterprise data warehouses together with natural language queries and their correct SQL statements which we collected from actual user history. We evaluated this dataset using recent LLMs and demonstrated their poor performance on this task. We hope this dataset will facilitate future researchers building more sophisticated text-to-SQL systems which can do better on this important class of data.
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- 2024
12. A Schistosoma Colitis Case Misdiagnosed as Ulcerative Colitis in a Non-Endemic Area: A Case Report
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Çağatay Ak, Süleyman Sayar, and Ebru Tarıkçı Kılıç
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Ulcerative colitis ,Inflammatory bowel disease ,Schistosomal colitis ,Turkey ,Infectious and parasitic diseases ,RC109-216 - Abstract
The differential diagnosis of bloody diarrhea is necessary to specify etiology and plan treatment. Misdiagnosis can lead to catastrophic results with the treatments to be given. In this case report, we present a case of schistosomal colitis mimicking ulcerative colitis in a 26-year-old Guinean male patient diagnosed in 2021.
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- 2022
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13. Did Andreas Vesalius’s De Humani Corporis Fabrica and/or Juan Valverde’s Historia De La Composicion Del Cuerpo Humano Really Influence the Anatomy Knowledge in the Ottoman Empire?A Preliminary Study on Shams al-Dīn ʿItāqī’s Tashrīh al-Abdān
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Ahmet Acıduman, Çağatay Aşkit, and Gözde Acıduman
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History of Civilization ,CB3-482 - Abstract
Aim of this study was to determine whether Vesalius and Valverde influenced Shams al-Dīn ʿItāqī considering the figures and several statements in Tashrīḥ al-Abdān wa Tarjamān Qibāla Faylasūfān. The statements and figures in illustrated copies of ʿItāqī’s book were examined and compared to those in Galen’s, Avicenna’s, Vesalius’s, and Valverde’s works, then the findings were evaluated. ʿItāqī’s book contains some figures only from Vesalius and/or Valverde’s works, but there is no new explanation related to issues such as the mandible, the sacrum, the rete mirabile, and the uterus. The Latin edition of Valverde’s book published in 1607 was probably the source of the Western-originated illustrations in the manuscript Hüsrev Paşa, Nr. 464 and of all the Western-based illustrations, except for the female figure in the manuscript of Istanbul University, Turkish Manuscripts, TY 2662. Spanish and/or Italian and/or Latin (1589) editions of Valverde’s book were the sources of most of the Western-originated illustrations, except the human skeleton figure in the manuscript of Prof. Uzluk’s personal collection. The information given by the works of Vesalius and Valverde has not influenced the explanations of ʿItāqī. ʿItāqī wrote his book according to the classical anatomical knowledge in the Islamic world of his era and he added Easternand Western-originated figures to his book to support/strengthen his statements. Or ʿItāqī work Tasrīḥ al-Abdān originally contained no illustrations. However, later, scribes/copiers added Eastern- and Western-originated anatomical figures to the book to support/strengthen statements at different times.
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- 2021
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14. İÇSEL MARKALAMANIN MARKA VATANDAŞLIK DAVRANIŞI VE İŞTE KALMA NİYETİ ÜZERİNE ETKİLERİ: HİZMET SEKTÖRÜNDE BİR ARAŞTIRMA
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Tanju GÜDÜK, Çağatay AKDOĞAN, and Ayşe AKYOL
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i̇çsel markalama ,marka vatandaşlık davranışı ,i̇şte kalma niyeti ,i̇çsel motivasyon. ,History of scholarship and learning. The humanities ,AZ20-999 ,Social sciences (General) ,H1-99 - Abstract
Marka vaadini, değerlerini ve özelliklerini benimseyen çalışanların, dış müşteriye markayı daha iyi tanıtabileceğini savunan içsel markalama, son yıllarda önem kazanan bir pazarlama unsuru olarak karşımıza çıkmaktadır. İçsel pazarlamanın önem kazanmasıyla literatürdeki yerini alan içsel markalama sayesinde işletmeler, günümüz pazar koşullarında rekabet avantajı elde etmekte ve çalışanların markayla özdeşleşerek işletmeye bağlılıklarını artırmaktadır. Bu çalışmanın temel amacı, içsel markalama ile marka vatandaşlık davranışı ve işte kalma niyeti arasındaki ilişkiyi incelemek, ayrıca içsel motivasyonun bu değişkenlerle ilişkisini ortaya koymaktır. Bu doğrultuda, Marmara Bölgesinde bulunan beş yıldızlı konaklama işletmelerinde içsel markalama faaliyetlerini değerlendirmek amacıyla 470 adet beş yıldızlı konaklama işletmesi çalışanına ulaşılmış olup elde edilen veriler yapısal eşitlik modeli ile analiz edilmiştir. Analiz sonucunda ise içsel markalama unsurlarının marka vatandaşlık davranışı ve işte kalma niyeti üzerinde pozitif etkisi olduğu görülmektedir. Ayrıca içsel motivasyon ile marka vatandaşlık davranışı ve işte kalma niyeti arasında pozitif bir ilişki olduğu görülmektedir.
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- 2021
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15. Cutaneous metastasis of bladder urothelial carcinoma; A rare conditions
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Hakan Öztürk, Selin Yurtsever, Arzum Özer, Çağatay Arslan, Fatma Seher Pehlivan, and Aysun Tekeli
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Bladder cancer ,Urothelial carcinoma ,Metastasis ,Cutaneous metastasis ,Immunotheraphy ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Cutaneous is an extremely rare metastatic area of bladder urothelial carcinoma. Pure cutaneous metastasis without systemic metastasis is very rare and less than ten cases have been reported in the literature. Our patient had various lymphatic fistulas to her skin due to pelvic lymphadenectomy and radiotherapy in her previous cervical cancer. We believe that the most probable mechanism underlying our patient's cutaneous metastasis is a lymphatic spread via those lymphatic fistulas. Immunotherapy is a very important option for patients who cannot receive cisplatin. This is the second case in the literature to apply immunotherapy in the setting of cutaneous metastasis of bladder cancer.
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- 2022
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16. Neural network-based processing and reconstruction of compromised biophotonic image data.
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Fanous, Michael, Casteleiro Costa, Paloma, Işıl, Çağatay, Huang, Luzhe, and Ozcan, Aydogan
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In recent years, the integration of deep learning techniques with biophotonic setups has opened new horizons in bioimaging. A compelling trend in this field involves deliberately compromising certain measurement metrics to engineer better bioimaging tools in terms of e.g., cost, speed, and form-factor, followed by compensating for the resulting defects through the utilization of deep learning models trained on a large amount of ideal, superior or alternative data. This strategic approach has found increasing popularity due to its potential to enhance various aspects of biophotonic imaging. One of the primary motivations for employing this strategy is the pursuit of higher temporal resolution or increased imaging speed, critical for capturing fine dynamic biological processes. Additionally, this approach offers the prospect of simplifying hardware requirements and complexities, thereby making advanced imaging standards more accessible in terms of cost and/or size. This article provides an in-depth review of the diverse measurement aspects that researchers intentionally impair in their biophotonic setups, including the point spread function (PSF), signal-to-noise ratio (SNR), sampling density, and pixel resolution. By deliberately compromising these metrics, researchers aim to not only recuperate them through the application of deep learning networks, but also bolster in return other crucial parameters, such as the field of view (FOV), depth of field (DOF), and space-bandwidth product (SBP). Throughout this article, we discuss various biophotonic methods that have successfully employed this strategic approach. These techniques span a wide range of applications and showcase the versatility and effectiveness of deep learning in the context of compromised biophotonic data. Finally, by offering our perspectives on the exciting future possibilities of this rapidly evolving concept, we hope to motivate our readers from various disciplines to explore novel ways of balancing hardware compromises with compensation via artificial intelligence (AI).
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- 2024
17. The Evolution of Reinforcement Learning in Quantitative Finance
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Pippas, Nikolaos, Turkay, Cagatay, and Ludvig, Elliot A.
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Computer Science - Artificial Intelligence ,Computer Science - Computational Engineering, Finance, and Science ,Computer Science - Machine Learning ,I.2.6 ,I.2.1 - Abstract
Reinforcement Learning (RL) has experienced significant advancement over the past decade, prompting a growing interest in applications within finance. This survey critically evaluates 167 publications, exploring diverse RL applications and frameworks in finance. Financial markets, marked by their complexity, multi-agent nature, information asymmetry, and inherent randomness, serve as an intriguing test-bed for RL. Traditional finance offers certain solutions, and RL advances these with a more dynamic approach, incorporating machine learning methods, including transfer learning, meta-learning, and multi-agent solutions. This survey dissects key RL components through the lens of Quantitative Finance. We uncover emerging themes, propose areas for future research, and critique the strengths and weaknesses of existing methods., Comment: This work is currently submitted to and under-review for ACM Computing Surveys. This copy is an unedited, pre-print version and it is the author's version of the work. I
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- 2024
18. Unidirectional imaging with partially coherent light
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Ma, Guangdong, Shen, Che-Yung, Li, Jingxi, Huang, Luzhe, Isil, Cagatay, Ardic, Fazil Onuralp, Yang, Xilin, Li, Yuhang, Wang, Yuntian, Rahman, Md Sadman Sakib, and Ozcan, Aydogan
- Subjects
Physics - Optics ,Computer Science - Computer Vision and Pattern Recognition ,Physics - Applied Physics - Abstract
Unidirectional imagers form images of input objects only in one direction, e.g., from field-of-view (FOV) A to FOV B, while blocking the image formation in the reverse direction, from FOV B to FOV A. Here, we report unidirectional imaging under spatially partially coherent light and demonstrate high-quality imaging only in the forward direction (A->B) with high power efficiency while distorting the image formation in the backward direction (B->A) along with low power efficiency. Our reciprocal design features a set of spatially engineered linear diffractive layers that are statistically optimized for partially coherent illumination with a given phase correlation length. Our analyses reveal that when illuminated by a partially coherent beam with a correlation length of ~1.5 w or larger, where w is the wavelength of light, diffractive unidirectional imagers achieve robust performance, exhibiting asymmetric imaging performance between the forward and backward directions - as desired. A partially coherent unidirectional imager designed with a smaller correlation length of less than 1.5 w still supports unidirectional image transmission, but with a reduced figure of merit. These partially coherent diffractive unidirectional imagers are compact (axially spanning less than 75 w), polarization-independent, and compatible with various types of illumination sources, making them well-suited for applications in asymmetric visual information processing and communication., Comment: 25 Pages, 8 Figures
- Published
- 2024
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19. Humboldt: Metadata-Driven Extensible Data Discovery
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Bäuerle, Alex, Demiralp, Çağatay, and Stonebraker, Michael
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Computer Science - Databases ,Computer Science - Human-Computer Interaction - Abstract
Data discovery is crucial for data management and analysis and can benefit from better utilization of metadata. For example, users may want to search data using queries like ``find the tables created by Alex and endorsed by Mike that contain sales numbers.'' They may also want to see how the data they view relates to other data, its lineage, or the quality and compliance of its upstream datasets, all metadata. Yet, effectively surfacing metadata through interactive user interfaces (UIs) to augment data discovery poses challenges. Constantly revamping UIs with each update to metadata sources (or providers) consumes significant development resources and lacks scalability and extensibility. In response, we introduce Humboldt, a new framework enabling interactive data systems to effectively leverage metadata for data discovery and rapidly evolve their UIs to support metadata changes. Humboldt decouples metadata sources from the implementation of data discovery UIs that support search and dataset visualization using metadata fields. It automatically generates interactive data discovery interfaces from declarative specifications, avoiding costly metadata-specific (re)implementations., Comment: TaDA Workshop at VLDB 2024
- Published
- 2024
20. From Stem to Stern: Contestability Along AI Value Chains
- Author
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Balayn, Agathe, Pi, Yulu, Widder, David Gray, Alfrink, Kars, Yurrita, Mireia, Upadhyay, Sohini, Karusala, Naveena, Lyons, Henrietta, Turkay, Cagatay, Tessono, Christelle, Attard-Frost, Blair, and Gadiraju, Ujwal
- Subjects
Computer Science - Artificial Intelligence ,Computer Science - Computers and Society ,Computer Science - Human-Computer Interaction - Abstract
This workshop will grow and consolidate a community of interdisciplinary CSCW researchers focusing on the topic of contestable AI. As an outcome of the workshop, we will synthesize the most pressing opportunities and challenges for contestability along AI value chains in the form of a research roadmap. This roadmap will help shape and inspire imminent work in this field. Considering the length and depth of AI value chains, it will especially spur discussions around the contestability of AI systems along various sites of such chains. The workshop will serve as a platform for dialogue and demonstrations of concrete, successful, and unsuccessful examples of AI systems that (could or should) have been contested, to identify requirements, obstacles, and opportunities for designing and deploying contestable AI in various contexts. This will be held primarily as an in-person workshop, with some hybrid accommodation. The day will consist of individual presentations and group activities to stimulate ideation and inspire broad reflections on the field of contestable AI. Our aim is to facilitate interdisciplinary dialogue by bringing together researchers, practitioners, and stakeholders to foster the design and deployment of contestable AI., Comment: 5 pages, 0 figure, to be held as a workshop at CSCW'24
- Published
- 2024
21. Making LLMs Work for Enterprise Data Tasks
- Author
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Demiralp, Çağatay, Wenz, Fabian, Chen, Peter Baile, Kayali, Moe, Tatbul, Nesime, and Stonebraker, Michael
- Subjects
Computer Science - Databases ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Large language models (LLMs) know little about enterprise database tables in the private data ecosystem, which substantially differ from web text in structure and content. As LLMs' performance is tied to their training data, a crucial question is how useful they can be in improving enterprise database management and analysis tasks. To address this, we contribute experimental results on LLMs' performance for text-to-SQL and semantic column-type detection tasks on enterprise datasets. The performance of LLMs on enterprise data is significantly lower than on benchmark datasets commonly used. Informed by our findings and feedback from industry practitioners, we identify three fundamental challenges -- latency, cost, and quality -- and propose potential solutions to use LLMs in enterprise data workflows effectively., Comment: Poster at North East Database Day 2024
- Published
- 2024
22. Efficient and Safe Contact-rich pHRI via Subtask Detection and Motion Estimation using Deep Learning
- Author
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Niaz, Pouya P., Erzin, Engin, and Basdogan, Cagatay
- Subjects
Computer Science - Robotics - Abstract
This paper proposes an adaptive admittance controller for improving efficiency and safety in physical human-robot interaction (pHRI) tasks in small-batch manufacturing that involve contact with stiff environments, such as drilling, polishing, cutting, etc. We aim to minimize human effort and task completion time while maximizing precision and stability during the contact of the machine tool attached to the robot's end-effector with the workpiece. To this end, a two-layered learning-based human intention recognition mechanism is proposed, utilizing only the kinematic and kinetic data from the robot and two force sensors. A ``subtask detector" recognizes the human intent by estimating which phase of the task is being performed, e.g., \textit{Idle}, \textit{Tool-Attachment}, \textit{Driving}, and \textit{Contact}. Simultaneously, a ``motion estimator" continuously quantifies intent more precisely during the \textit{Driving} to predict when \textit{Contact} will begin. The controller is adapted online according to the subtask while allowing early adaptation before the \textit{Contact} to maximize precision and safety and prevent potential instabilities. Three sets of pHRI experiments were performed with multiple subjects under various conditions. Spring compression experiments were performed in virtual environments to train the data-driven models and validate the proposed adaptive system, and drilling experiments were performed in the physical world to test the proposed methods' efficacy in real-life scenarios. Experimental results show subtask classification accuracy of 84\% and motion estimation R\textsuperscript{2} score of 0.96. Furthermore, 57\% lower human effort was achieved during \textit{Driving} as well as 53\% lower oscillation amplitude at \textit{Contact} as a result of the proposed system.
- Published
- 2024
23. Virtual Gram staining of label-free bacteria using darkfield microscopy and deep learning
- Author
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Isil, Cagatay, Koydemir, Hatice Ceylan, Eryilmaz, Merve, de Haan, Kevin, Pillar, Nir, Mentesoglu, Koray, Unal, Aras Firat, Rivenson, Yair, Chandrasekaran, Sukantha, Garner, Omai B., and Ozcan, Aydogan
- Subjects
Quantitative Biology - Quantitative Methods ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Medical Physics ,Physics - Optics - Abstract
Gram staining has been one of the most frequently used staining protocols in microbiology for over a century, utilized across various fields, including diagnostics, food safety, and environmental monitoring. Its manual procedures make it vulnerable to staining errors and artifacts due to, e.g., operator inexperience and chemical variations. Here, we introduce virtual Gram staining of label-free bacteria using a trained deep neural network that digitally transforms darkfield images of unstained bacteria into their Gram-stained equivalents matching brightfield image contrast. After a one-time training effort, the virtual Gram staining model processes an axial stack of darkfield microscopy images of label-free bacteria (never seen before) to rapidly generate Gram staining, bypassing several chemical steps involved in the conventional staining process. We demonstrated the success of the virtual Gram staining workflow on label-free bacteria samples containing Escherichia coli and Listeria innocua by quantifying the staining accuracy of the virtual Gram staining model and comparing the chromatic and morphological features of the virtually stained bacteria against their chemically stained counterparts. This virtual bacteria staining framework effectively bypasses the traditional Gram staining protocol and its challenges, including stain standardization, operator errors, and sensitivity to chemical variations., Comment: 25 Pages, 5 Figures
- Published
- 2024
24. DroBoost: An Intelligent Score and Model Boosting Method for Drone Detection
- Author
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Eryuksel, Ogulcan, Ozfuttu, Kamil Anil, Akyon, Fatih Cagatay, Sahin, Kadir, Buyukborekci, Efe, Cavusoglu, Devrim, and Altinuc, Sinan
- Subjects
Computer Science - Computer Vision and Pattern Recognition - Abstract
Drone detection is a challenging object detection task where visibility conditions and quality of the images may be unfavorable, and detections might become difficult due to complex backgrounds, small visible objects, and hard to distinguish objects. Both provide high confidence for drone detections, and eliminating false detections requires efficient algorithms and approaches. Our previous work, which uses YOLOv5, uses both real and synthetic data and a Kalman-based tracker to track the detections and increase their confidence using temporal information. Our current work improves on the previous approach by combining several improvements. We used a more diverse dataset combining multiple sources and combined with synthetic samples chosen from a large synthetic dataset based on the error analysis of the base model. Also, to obtain more resilient confidence scores for objects, we introduced a classification component that discriminates whether the object is a drone or not. Finally, we developed a more advanced scoring algorithm for object tracking that we use to adjust localization confidence. Furthermore, the proposed technique won 1st Place in the Drone vs. Bird Challenge (Workshop on Small-Drone Surveillance, Detection and Counteraction Techniques at ICIAP 2021).
- Published
- 2024
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25. Identifying latent state transition in non-linear dynamical systems
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Hızlı, Çağlar, Yıldız, Çağatay, Bethge, Matthias, John, ST, and Marttinen, Pekka
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Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
This work aims to improve generalization and interpretability of dynamical systems by recovering the underlying lower-dimensional latent states and their time evolutions. Previous work on disentangled representation learning within the realm of dynamical systems focused on the latent states, possibly with linear transition approximations. As such, they cannot identify nonlinear transition dynamics, and hence fail to reliably predict complex future behavior. Inspired by the advances in nonlinear ICA, we propose a state-space modeling framework in which we can identify not just the latent states but also the unknown transition function that maps the past states to the present. We introduce a practical algorithm based on variational auto-encoders and empirically demonstrate in realistic synthetic settings that we can (i) recover latent state dynamics with high accuracy, (ii) correspondingly achieve high future prediction accuracy, and (iii) adapt fast to new environments.
- Published
- 2024
26. Dural Carotid-cavernous Fistula Mimicking Thyroid Orbitopathy
- Author
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Aysel Pelit, Mehmet Serdar Dervişoğulları, Çağatay Andiç, and Veli Nusret Özdemir
- Subjects
carotid-cavernous fistula ,thyroid orbitopathy ,strabismus. ,Ophthalmology ,RE1-994 - Abstract
In this study, we aim to present a case with dural carotid-cavernous fistula mimicking thyroid orbitopathy. The differential diagnosis of red-eye is very complex, and the caregiver should distinguish between all diagnoses.
- Published
- 2019
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27. THE RELATIONSHIP BETWEEN MATERIALIST VALUES AND HEDONIC AND UTILITARIAN SHOPPING TO LIFE SATISFACTION
- Author
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Yasin Yılmaztürk, Çağatay Akdoğan, and Özgür Kayapınar
- Subjects
materialist values ,hedonic shopping ,utilitarian shopping ,life satisfaction ,History of scholarship and learning. The humanities ,AZ20-999 ,Social sciences (General) ,H1-99 - Abstract
Although today's consumers have more product and service options than before, there is no parallel increase in the satisfaction levels of consumers. This also changes opinions about consumer buying behavior. It is thought that consumers have bought products for not only the their tangible properties (utilitarian shopping) only for utility but also their pleasure and happiness (hedonic shopping). Materialists often think that material objects will lead to happiness, life satisfaction and general well-being. In this context, the aim of the study is to reveal the relationship between materialistic values and hedonic and utilitarian shopping and to investigate the effect of this relationship on life satisfaction. 517 academicians from Trakya, Kırklareli and Namık Kemal Universities were reached within the scope of the study and data were obtained by survey. For the purpose of the study, fitness of the scales to the Structural Equation Model (SEM) was tested by using Explanatory Factor Analysis and Confirmatory Factor Analysis. As a result of the analysis, it was found that there was a significant relationship between the centralization, which is the sub-dimension of materialist values and the hedonic shopping; centralization and happiness, which are the sub-dimension of materialist values and utilitarian shopping. In addition, there is a significant relationship between hedonic and utilitarian shopping and life satisfaction. Finally, it has been found that there is an indirect relationship between materialistic values and life satisfaction with the mediating effect of hedonic and utilitarian shopping.
- Published
- 2019
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28. Design Considerations for Automatic Musical Soundscapes of Visual Art for People with Blindness or Low Vision
- Author
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Krol, Stephen James, Llano, Maria Teresa, Butler, Matthew, and Goncu, Cagatay
- Subjects
Computer Science - Human-Computer Interaction - Abstract
Music has been identified as a promising medium to enhance the accessibility and experience of visual art for people who are blind or have low vision (BLV). However, composing music and designing soundscapes for visual art is a time-consuming, resource intensive process - limiting its scalability for large exhibitions. In this paper, we investigate the use of automated soundscapes to increase the accessibility of visual art. We built a prototype system and ran a qualitative study to evaluate the aesthetic experience provided by the automated soundscapes with 10 BLV participants. From the study, we identified a set of design considerations that reveal requirements from BLV people for the development of automated soundscape systems, setting new directions in which creative systems could enrich the aesthetic experience conveyed by these., Comment: Paper accepted into ICCC 24
- Published
- 2024
29. Dynamics Over Homogeneous Spaces
- Author
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Uçgun, Filiz Çağatay, Esen, Oğul, and Sütlü, Serkan
- Subjects
Mathematics - Differential Geometry ,Mathematical Physics ,57T15, 14M17, 70H03, 70H05, 70H50, 37J37 - Abstract
We present the Euler-Lagrange and Hamilton's equations for a system whose configuration space is a unified product Lie group $G=M\bowtie_{\gamma} H$, for some $\gamma:M\times M \to H$. By reduction, then, we obtain the Euler-Lagrange type and Hamilton's type equations of the same form for the quotient space $M\cong G/H$, although it is not necessarily a Lie group. We observe, through further reduction, that it is possible to formulate the Euler-Poincar\'{e} type and Lie-Poisson type equations on the corresponding quotient $\mathfrak{m}\cong \mathfrak{g}/\mathfrak{h}$ of Lie algebras, which is not a priori a Lie algebra. Moreover, we realize the $n$th order iterated tangent group $T^{(n)}G$ of a Lie group $G$ as an extension of the $n$th order tangent group $T^nG$ of the same type. More precisely, $\mathfrak{g}$ being the Lie algebra of $G$, $T^{(n)}G \cong \mathfrak{g}^{\times \,2^n-1-n} \bowtie_\gamma T^nG$ for some $\gamma:\mathfrak{g}^{\times \,2^n-1-n} \times \mathfrak{g}^{\times \,2^n-1-n} \to T^nG$. We thus obtain the $n$th order Euler-Lagrange (and then the $n$th order Euler-Poincar\'e) equations over $T^nG$ by reduction from those on $T(T^{n-1}G)$. Finally, we illustrate our results in the realm of the Kepler problem, and the non-linear tokamak plasma dynamics.
- Published
- 2024
30. Neural Network-Based Processing and Reconstruction of Compromised Biophotonic Image Data
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Fanous, Michael John, Costa, Paloma Casteleiro, Isil, Cagatay, Huang, Luzhe, and Ozcan, Aydogan
- Subjects
Physics - Optics ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning ,Physics - Applied Physics - Abstract
The integration of deep learning techniques with biophotonic setups has opened new horizons in bioimaging. A compelling trend in this field involves deliberately compromising certain measurement metrics to engineer better bioimaging tools in terms of cost, speed, and form-factor, followed by compensating for the resulting defects through the utilization of deep learning models trained on a large amount of ideal, superior or alternative data. This strategic approach has found increasing popularity due to its potential to enhance various aspects of biophotonic imaging. One of the primary motivations for employing this strategy is the pursuit of higher temporal resolution or increased imaging speed, critical for capturing fine dynamic biological processes. This approach also offers the prospect of simplifying hardware requirements/complexities, thereby making advanced imaging standards more accessible in terms of cost and/or size. This article provides an in-depth review of the diverse measurement aspects that researchers intentionally impair in their biophotonic setups, including the point spread function, signal-to-noise ratio, sampling density, and pixel resolution. By deliberately compromising these metrics, researchers aim to not only recuperate them through the application of deep learning networks, but also bolster in return other crucial parameters, such as the field-of-view, depth-of-field, and space-bandwidth product. Here, we discuss various biophotonic methods that have successfully employed this strategic approach. These techniques span broad applications and showcase the versatility and effectiveness of deep learning in the context of compromised biophotonic data. Finally, by offering our perspectives on the future possibilities of this rapidly evolving concept, we hope to motivate our readers to explore novel ways of balancing hardware compromises with compensation via AI., Comment: 17 Pages, 4 Figures, 1 Table
- Published
- 2024
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31. LEVA: Using Large Language Models to Enhance Visual Analytics
- Author
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Zhao, Yuheng, Zhang, Yixing, Zhang, Yu, Zhao, Xinyi, Wang, Junjie, Shao, Zekai, Turkay, Cagatay, and Chen, Siming
- Subjects
Computer Science - Human-Computer Interaction - Abstract
Visual analytics supports data analysis tasks within complex domain problems. However, due to the richness of data types, visual designs, and interaction designs, users need to recall and process a significant amount of information when they visually analyze data. These challenges emphasize the need for more intelligent visual analytics methods. Large language models have demonstrated the ability to interpret various forms of textual data, offering the potential to facilitate intelligent support for visual analytics. We propose LEVA, a framework that uses large language models to enhance users' VA workflows at multiple stages: onboarding, exploration, and summarization. To support onboarding, we use large language models to interpret visualization designs and view relationships based on system specifications. For exploration, we use large language models to recommend insights based on the analysis of system status and data to facilitate mixed-initiative exploration. For summarization, we present a selective reporting strategy to retrace analysis history through a stream visualization and generate insight reports with the help of large language models. We demonstrate how LEVA can be integrated into existing visual analytics systems. Two usage scenarios and a user study suggest that LEVA effectively aids users in conducting visual analytics., Comment: Accepted to IEEE TVCG 2024
- Published
- 2024
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32. Development of High Accuracy Classifier for the Speaker Recognition System
- Author
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Raghad Tariq Al-Hassani, Dogu Cagdas Atilla, and Çağatay Aydin
- Subjects
Biotechnology ,TP248.13-248.65 ,Biology (General) ,QH301-705.5 - Abstract
Speech signal is enriched with plenty of features used for biometrical recognition and other applications like gender and emotional recognition. Channel conditions manifested by background noise and reverberation are the main challenges causing feature shifts in the test and training data. In this paper, a hybrid speaker identification model for consistent speech features and high recognition accuracy is made. Features using Mel frequency spectrum coefficients (MFCC) have been improved by incorporating a pitch frequency coefficient from speech time domain analysis. In order to enhance noise immunity, we proposed a single hidden layer feed-forward neural network (FFNN) tuned by an optimized particle swarm optimization (OPSO) algorithm. The proposed model is tested using 10-fold cross-validation over different levels of Adaptive White Gaussian Noise (AWGN) (0-50 dB). A recognition accuracy of 97.83% was obtained from the proposed model in clean voice environments. However, a noisy channel is realized with lesser impact on the proposed model as compared with other baseline classifiers such as plain-FFNN, random forest (RF), K-nearest neighbour (KNN), and support vector machine (SVM).
- Published
- 2021
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33. Post-earthquake fires: Risk assessment and precautions
- Author
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Goksen, Fulya, Takva, Cagatay, Takva, Yenal, and Ilerisoy, Zeynep Yesim
- Published
- 2024
34. Induced pluripotent stem cell-derived cardiomyocyte in vitro models: benchmarking progress and ongoing challenges
- Author
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Ewoldt, Jourdan K., DePalma, Samuel J., Jewett, Maggie E., Karakan, M. Çağatay, Lin, Yih-Mei, Mir Hashemian, Paria, Gao, Xining, Lou, Lihua, McLellan, Micheal A., Tabares, Jonathan, Ma, Marshall, Salazar Coariti, Adriana C., He, Jin, Toussaint, Jr., Kimani C., Bifano, Thomas G., Ramaswamy, Sharan, White, Alice E., Agarwal, Arvind, Lejeune, Emma, Baker, Brendon M., and Chen, Christopher S.
- Published
- 2024
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- View/download PDF
35. A collaborative decision support framework for sustainable cargo composition in container shipping services
- Author
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Bilican, Mevlut Savas, Iris, Çağatay, and Karatas, Mumtaz
- Published
- 2024
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36. Automated detection of type 1 ROP, type 2 ROP and A-ROP based on deep learning
- Author
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Kıran Yenice, Eşay, Kara, Caner, and Erdaş, Çağatay Berke
- Published
- 2024
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37. Locomotion modulates specific functional cell types in the mouse visual thalamus
- Author
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Çağatay Aydın, João Couto, Michele Giugliano, Karl Farrow, and Vincent Bonin
- Subjects
Science - Abstract
Locomotion is known to modulate neuronal firing in both the visual thalamus (LGN) and V1. Here, the authors characterize the LGN modulation in detail and report that neurons with transient ON responses for high spatial frequency stimuli show the strongest gain modulation.
- Published
- 2018
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38. Investigating Continual Pretraining in Large Language Models: Insights and Implications
- Author
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Yıldız, Çağatay, Ravichandran, Nishaanth Kanna, Punia, Prishruit, Bethge, Matthias, and Ermis, Beyza
- Subjects
Computer Science - Computation and Language - Abstract
This paper studies the evolving domain of Continual Learning (CL) in large language models (LLMs), with a focus on developing strategies for efficient and sustainable training. Our primary emphasis is on continual domain-adaptive pretraining, a process designed to equip LLMs with the ability to integrate new information from various domains while retaining previously learned knowledge and enhancing cross-domain knowledge transfer without relying on domain-specific identification. Unlike previous studies, which mostly concentrate on a limited selection of tasks or domains and primarily aim to address the issue of forgetting, our research evaluates the adaptability and capabilities of LLMs to changing data landscapes in practical scenarios. To this end, we introduce a new benchmark designed to measure the adaptability of LLMs to these evolving data environments, offering a comprehensive framework for evaluation. We examine the impact of model size on learning efficacy and forgetting, as well as how the progression and similarity of emerging domains affect the knowledge transfer within these models. Our findings uncover several key insights: (i) when the sequence of domains shows semantic similarity, continual pretraining enables LLMs to better specialize in the current domain compared to stand-alone fine-tuning, (ii) training across a diverse range of domains enhances both backward and forward knowledge transfer, and (iii) smaller models are particularly sensitive to continual pretraining, showing the most significant rates of both forgetting and learning. We posit that our research marks a shift towards establishing a more realistic benchmark for investigating CL in LLMs, and has the potential to play a key role in guiding the direction of future research in the field.
- Published
- 2024
39. Subwavelength Imaging using a Solid-Immersion Diffractive Optical Processor
- Author
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Hu, Jingtian, Liao, Kun, Dinc, Niyazi Ulas, Gigli, Carlo, Bai, Bijie, Gan, Tianyi, Li, Xurong, Chen, Hanlong, Yang, Xilin, Li, Yuhang, Isil, Cagatay, Rahman, Md Sadman Sakib, Li, Jingxi, Hu, Xiaoyong, Jarrahi, Mona, Psaltis, Demetri, and Ozcan, Aydogan
- Subjects
Physics - Optics ,Computer Science - Computer Vision and Pattern Recognition ,Physics - Applied Physics - Abstract
Phase imaging is widely used in biomedical imaging, sensing, and material characterization, among other fields. However, direct imaging of phase objects with subwavelength resolution remains a challenge. Here, we demonstrate subwavelength imaging of phase and amplitude objects based on all-optical diffractive encoding and decoding. To resolve subwavelength features of an object, the diffractive imager uses a thin, high-index solid-immersion layer to transmit high-frequency information of the object to a spatially-optimized diffractive encoder, which converts/encodes high-frequency information of the input into low-frequency spatial modes for transmission through air. The subsequent diffractive decoder layers (in air) are jointly designed with the encoder using deep-learning-based optimization, and communicate with the encoder layer to create magnified images of input objects at its output, revealing subwavelength features that would otherwise be washed away due to diffraction limit. We demonstrate that this all-optical collaboration between a diffractive solid-immersion encoder and the following decoder layers in air can resolve subwavelength phase and amplitude features of input objects in a highly compact design. To experimentally demonstrate its proof-of-concept, we used terahertz radiation and developed a fabrication method for creating monolithic multi-layer diffractive processors. Through these monolithically fabricated diffractive encoder-decoder pairs, we demonstrated phase-to-intensity transformations and all-optically reconstructed subwavelength phase features of input objects by directly transforming them into magnified intensity features at the output. This solid-immersion-based diffractive imager, with its compact and cost-effective design, can find wide-ranging applications in bioimaging, endoscopy, sensing and materials characterization., Comment: 32 Pages, 9 Figures
- Published
- 2024
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- View/download PDF
40. Globe-LFMC 2.0, an enhanced and updated dataset for live fuel moisture content research.
- Author
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Yebra, Marta, Scortechini, Gianluca, Adeline, Karine, Aktepe, Nursema, Almoustafa, Turkia, Bar-Massada, Avi, Beget, María, Boer, Matthias, Bradstock, Ross, Brown, Tegan, Castro, Francesc, Chen, Rui, Chuvieco, Emilio, Danson, Mark, Değirmenci, Cihan, Delgado-Dávila, Ruth, Dennison, Philip, Di Bella, Carlos, Domenech, Oriol, Féret, Jean-Baptiste, Forsyth, Greg, Gabriel, Eva, Gagkas, Zisis, Gharbi, Fatma, Granda, Elena, Griebel, Anne, He, Binbin, Jolly, Matt, Kotzur, Ivan, Kraaij, Tineke, Kristina, Agnes, Kütküt, Pınar, Limousin, Jean-Marc, Martín, M, Monteiro, Antonio, Morais, Marco, Moreira, Bruno, Mouillot, Florent, Msweli, Samukelisiwe, Nolan, Rachael, Pellizzaro, Grazia, Qi, Yi, Quan, Xingwen, Resco de Dios, Victor, Roberts, Dar, Tavşanoğlu, Çağatay, Taylor, Andy, Taylor, Jackson, Tüfekcioğlu, İrem, Ventura, Andrea, and Younes Cardenas, Nicolas
- Abstract
Globe-LFMC 2.0, an updated version of Globe-LFMC, is a comprehensive dataset of over 280,000 Live Fuel Moisture Content (LFMC) measurements. These measurements were gathered through field campaigns conducted in 15 countries spanning 47 years. In contrast to its prior version, Globe-LFMC 2.0 incorporates over 120,000 additional data entries, introduces more than 800 new sampling sites, and comprises LFMC values obtained from samples collected until the calendar year 2023. Each entry within the dataset provides essential information, including date, geographical coordinates, plant species, functional type, and, where available, topographical details. Moreover, the dataset encompasses insights into the sampling and weighing procedures, as well as information about land cover type and meteorological conditions at the time and location of each sampling event. Globe-LFMC 2.0 can facilitate advanced LFMC research, supporting studies on wildfire behaviour, physiological traits, ecological dynamics, and land surface modelling, whether remote sensing-based or otherwise. This dataset represents a valuable resource for researchers exploring the diverse LFMC aspects, contributing to the broader field of environmental and ecological research.
- Published
- 2024
41. Infinite dSprites for Disentangled Continual Learning: Separating Memory Edits from Generalization
- Author
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Dziadzio, Sebastian, Yıldız, Çağatay, van de Ven, Gido M., Trzciński, Tomasz, Tuytelaars, Tinne, and Bethge, Matthias
- Subjects
Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition - Abstract
The ability of machine learning systems to learn continually is hindered by catastrophic forgetting, the tendency of neural networks to overwrite previously acquired knowledge when learning a new task. Existing methods mitigate this problem through regularization, parameter isolation, or rehearsal, but they are typically evaluated on benchmarks comprising only a handful of tasks. In contrast, humans are able to learn over long time horizons in dynamic, open-world environments, effortlessly memorizing unfamiliar objects and reliably recognizing them under various transformations. To make progress towards closing this gap, we introduce Infinite dSprites, a parsimonious tool for creating continual classification and disentanglement benchmarks of arbitrary length and with full control over generative factors. We show that over a sufficiently long time horizon, the performance of all major types of continual learning methods deteriorates on this simple benchmark. This result highlights an important and previously overlooked aspect of continual learning: given a finite modelling capacity and an arbitrarily long learning horizon, efficient learning requires memorizing class-specific information and accumulating knowledge about general mechanisms. In a simple setting with direct supervision on the generative factors, we show how learning class-agnostic transformations offers a way to circumvent catastrophic forgetting and improve classification accuracy over time. Our approach sets the stage for continual learning over hundreds of tasks with explicit control over memorization and forgetting, emphasizing open-set classification and one-shot generalization., Comment: 10 pages, 10 figures
- Published
- 2023
42. State-of-the-Art in Nudity Classification: A Comparative Analysis
- Author
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Akyon, Fatih Cagatay and Temizel, Alptekin
- Subjects
Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
This paper presents a comparative analysis of existing nudity classification techniques for classifying images based on the presence of nudity, with a focus on their application in content moderation. The evaluation focuses on CNN-based models, vision transformer, and popular open-source safety checkers from Stable Diffusion and Large-scale Artificial Intelligence Open Network (LAION). The study identifies the limitations of current evaluation datasets and highlights the need for more diverse and challenging datasets. The paper discusses the potential implications of these findings for developing more accurate and effective image classification systems on online platforms. Overall, the study emphasizes the importance of continually improving image classification models to ensure the safety and well-being of platform users. The project page, including the demonstrations and results is publicly available at https://github.com/fcakyon/content-moderation-deep-learning., Comment: Published at ICASSP 2023
- Published
- 2023
43. Demographics of co-aging complex systems: from sickly worms to chess engines
- Author
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Eskin, Cagatay and Vural, Dervis C.
- Subjects
Physics - Biological Physics - Abstract
Aging, as defined in terms of the slope of the probability of death versus time (hazard curve), is a generic phenomenon observed in nearly all complex systems. Theoretical models of aging predict hazard curves that monotonically increase in time, in discrepancy with the peculiar ups and downs observed in empirically. Here we introduce the concept of co-aging, where the demographic trajectories of multiple cohorts couple together, and show that co-aging dynamics can account for the anomalous hazard curves exhibited by some species. In our model, multiple interdependency networks inflict damage on one other proportional to their number of functional nodes. We then fit our model predictions to three datasets describing (1) co-aging worm-pathogen populations (2) competing tree species. Lastly, we gather the mortality statistics of (3) machine-against-machine chess games to demonstrate that co-aging dynamics is not exclusive to biological systems.
- Published
- 2023
44. Pulse frequency variations and timing noise of MXB 0656-072 during the 2007-2008 type I outbursts and implications for its magnetic field
- Author
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Serim, M. Mirac, Serim, Danjela, Dönmez, Çağatay Kerem, Tuo, Youli, Ducci, Lorenzo, Baykal, Altan, and Santangelo, Andrea
- Subjects
Astrophysics - High Energy Astrophysical Phenomena - Abstract
We aim to explore the properties of the Be/X-ray binary system MXB 0656-072 from a timing analysis perspective through an investigation of the RXTE/PCA and Fermi/GBM data during its 2007-2008 type I outbursts. We applied two new techniques, for the first time, along with the conventional Deeter method to produce higher-resolution power density spectra (PDS) of the torque fluctuations. We also investigated the spin frequency evolution of the source by utilising a pulse timing technique. The PDSs show a red noise pattern, with a steepness of $\Gamma \sim -2$ and a saturation timescale of $\sim$150 d, indicating that MXB 0656-072 is a disc-fed source. With the obtained long term spin frequency evolution, we reveal the torque-luminosity correlation of MXB 0656-072 for the first time. We also demonstrate that the frequency evolution is largely consistent with the Ghosh-Lamb model. In the RXTE/PCA observations, the pulsed emission disappears below $\sim$5$\times 10^{35}$ erg s$^{-1}$, while the profiles remain stable above this value in our analysis time frame. We show that the magnetic field strength deduced from the torque model is compatible with the field strength of the pulsar derived from the cyclotron resonance scattering feature. Utilising the new distance of MXB 0656-072 measured by Gaia, we show that the spectral transition of MXB 0656-072 occurs at a luminosity that matches the expected theoretical transition from the subcritical to supercritical accretion regime., Comment: 7 pages, 5 figures. Accepted for publication in A&A
- Published
- 2023
- Full Text
- View/download PDF
45. A hybrid approach of ALNS with alternative initialization and acceptance mechanisms for capacitated vehicle routing problems
- Author
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Kuyu, Yiğit Çağatay and Vatansever, Fahri
- Published
- 2024
- Full Text
- View/download PDF
46. Use of proteomic-based MALDI-TOF mass spectra for identification of bacterial pathogens in aquaculture: a review
- Author
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Çağatay, İfakat Tülay
- Published
- 2024
- Full Text
- View/download PDF
47. Kablosuz Ağlarda Yeni Bir Anahtar Dağıtım Yöntemi
- Author
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Çağatay Ay
- Subjects
adaptive huffman ,aes ,ağ steganografisi ,anahtar dağıtımı ,icmp ,ping ,key delivery ,network steganography ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Science ,Science (General) ,Q1-390 - Abstract
Ağ teknolojilerinin gelişimi ve dijital cihazların artışı multimedya iletimini hızlı ve kolay kılmıştır. Bununla birlikte açık haberleşme kanalları üzerinden yapılan dijital veri iletimi, telif hakkı ihlalleri, dolandırıcılık vb. birçok güvenlik açığını beraberinde getirmiştir. Bu sebepten dolayı güvenli veri iletimi için geliştirilen yöntem ve teknikler oldukça önem kazanmaktadır. Bu tekniklerden biri olan steganografi, gizli iletişim için zararsız görünen bir taşıyıcıya veri eklemesi yapan bilgi gizlemenin alt dallarından biri olarak tanımlanabilir. Veri gizlenirken kullanılan yöntem ve tekniğin sistem dışı kişiler tarafından bilinmesi güvenli veri iletişimini olumsuz yönde etkileyecektir. Steganografinin güvenlik konusunda yetersiz olması, beraberinde şifrelemeyi gündeme getirmektedir. Açık haberleşme kanalları ile yapılmak istenilen gizli iletişimin, çeşitli steganografik metotlar ve şifreleme algoritmaları ile desteklenmesi gerekmektedir. Bu çalışmada, ağ kanalları üzerinden güvenli anahtar dağıtımı için ağ steganografisinden yararlanan bir yöntem geliştirilmiştir. Deneysel sonuçlar, yapılan çalışmanın sağlamlık ve algılanamazlık koşullarında uygulanabilir olduğunu göstermiştir.
- Published
- 2017
48. Glomus tümörlerinde cerrahi tedaviye selektif boyun diseksiyonu eklemenin metastazları saptamaya ve adjuvan tedavi seçimine olan katkısı
- Author
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Cenk Ahmet Şen, Ülkü Küçük, İbrahim Çukurova, and Çağatay Arslan
- Subjects
malignant glomus tumor ,radiotherapy ,malign glomus tümörü ,radyoterapi ,Medicine (General) ,R5-920 - Abstract
Glomus tümörleri oldukça nadir görülen benign tümörlerdir. Bölgesel lenf nodu metastazı yapan tipleri ise çok daha nadir görülür ve malign formunu oluşturur. Tedaviye boyun diseksiyonunun eklenmesi tartışmalı olmakla birlikte lenf nodu tutulumunun varlığı adjuvan tedavi seçeneklerini önemli ölçüde değiştirmektedir. Radyolojik olarak negatif izlenen lenf nodlarının boyun diseksiyonu ile pozitif saptanması ve ardından gelen tedavi yaklaşımlarını değiştirmesi nedeniyle nadir görülen bir malign glomus tümörü olgusunu sunmayı amaçladık.
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- 2016
- Full Text
- View/download PDF
49. Social Information Processing and Executive Functions in Male Children and Adolescents with Internet Gaming Disorder
- Author
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Turan, Serkan, Çıray, Remzi Oğulcan, Tunçtürk, Mustafa, Halac, Eren, Bilgic, Berrin, Ağaç, Nilay, and Ermiş, Çağatay
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- 2024
- Full Text
- View/download PDF
50. Analyzing land use and climate change impacts of Suğla water storage in Turkey
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Çiftçi, Hasan Çağatay, Gümüş, Kutalmış, and Gümüş, Münevver Gizem
- Published
- 2024
- Full Text
- View/download PDF
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