18 results on '"Åkerfelt M"'
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2. Miten ajatella lukemista?:esseistinen tutkielma lukemisesta esteettisenä kokemuksena
- Author
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Åkerfelt, M. (Mari)
- Abstract
Tiivistelmä. Tässä tutkielmassa tarkastelen lukemista esteettisenä kokemuksena. Kiinnitän huomiota siihen, mitä lukijan ja luettavan kanssakäymisessä tapahtuu ja miten esteettisen kokemuksen syntyä tässä kanssakäymisessä voisi ymmärtää. Esteettiselle kokemiselle on tyypillistä, ettei sitä aina pysty kuvaamaan tarkasti. Kokemus tuntuu ja vaikuttaa, mutta ei välttämättä sanallistu. Tätä kokemuksellisuuteen liittyvää piirrettä pyrin valottamaan. Tutkielmani paikantuu osaksi uudempaa lukemisen kokemuksellisuutta ja affektiivisuutta käsittelevää lukemisen tutkimusta, joka on monitieteistä. Verrattuna 1900-luvun jälkimmäisellä puoliskolla tehtyyn lukemista käsittelevään tutkimukseen 2000-luvun lukemista koskevassa tutkimuksessa on enemmän otettu huomioon myös vaikeasti hahmotettavissa olevia lukemisen vaikutuksia, kuten lukijoiden kokemuksia ja kirjallisuuteen liittyviä tunneilmiöitä. Tällainen tutkimus täydentää ymmärrystä lukemisesta keskeisesti arjessa läsnä olevana ilmiönä sekä mahdollisuuksista tutkia lukemista. Lukemisen tutkittavuus on toinen tämän tutkielman keskeisistä teemoista. Lukemista esteettisenä kokemuksena ja tutkimuskohteena hahmotan seuraavien tutkimuskysymysten kautta: 1. Miten lukemista tulisi lähestyä tutkimuskohteena, niin että otetaan huomioon sen kokemuksellinen luonne? ja 2. Millaisena ilmiönä lukeminen näyttäytyy, kun sitä tarkastellaan esteettisenä kokemuksena? Sovellan tutkielmassani lyyriseksi ajatteluksi kutsumaani metodista lähestymistapaa. Käsitän lyyrisen ajattelun intuitiiviseksi tiedonmuodostuksen tavaksi, jonka aikana ja avulla tutkimusaihetta kohtaan säilyy avoimuus. Sen avulla pyrin ottamaan huomioon lukemisen ja kokemusten luonteen tutkimuskohteena. Lyyristä ajattelua toteutan esseekirjoittamisen kautta. Olen kirjoittanut tutkielmani sisään neljä lukemista käsittelevää esseetä, joissa yhdistän toisiinsa taidefilosofista ajattelua ja lukemisen affektiivisuutta käsittelevää kirjallisuutta. Tutkielmani kehystämät esseet ovat: Kanssakäymistä taiteen kanssa eli kuinka ymmärtää esteettistä kokemusta, Aistittavuus ja materiaalisuus, Ymmärryksen rajoilla ja Lukemisesta kommunikointi ja kokemuksen sanoittamisen ongelma.
- Published
- 2020
3. Heat-shock factor 2 is a suppressor of prostate cancer invasion
- Author
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Björk, J K, primary, Åkerfelt, M, additional, Joutsen, J, additional, Puustinen, M C, additional, Cheng, F, additional, Sistonen, L, additional, and Nees, M, additional
- Published
- 2015
- Full Text
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4. Type-planning a Fenno-Swedish identity. The housing association for the Swedish speaking areas of Finland and the ideal rural home between 1938 and 1969
- Author
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Åkerfelt Mia
- Subjects
Social Sciences - Abstract
Better housing for the rural population was an important part ofthe Finnish housing discussion in the 20th century. Between 1938 and 1969, Bostadsföreningen för svenska Finland (The housing association for the Swedish speaking areas of Finland) promoted rational housingfor the Fenno-Swedish minority. The construction of a collective identityfor a minority through dwelling ideals is the main focus of the article.Methods as identity process theory and perspectives on architecture and nationalism are used to interpret the material. Specific questions relate to how modernist architecture became a symbol when constructing an identity for a non-homogeneous minority. The housing association viewed modernist housing as a solution to a political and ideologicalproblem. With efficient homes, Fenno-Swedish farmers were less inclined to sell their homesteads to Finnish speakers and move to the cities, where they were assimilated into the Finnish culture. Mobility wasperceived as a threat to the minority, since it led to a loss of voters in areas of political importance. Modernist architecture combined with aesthetics from the vernacular building tradition were used to make thefarmers proud of their ancestral homes, willing to stay, securing theideological home of the Fenno-Swedes.
- Published
- 2019
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5. Targeting the cancer cells and cancer-associated fibroblasts with next-generation FGFR inhibitors in prostate cancer co-culture models.
- Author
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Afshan S, Kim YG, Mattsson J, Åkerfelt M, Härkönen P, Baumgartner M, and Nees M
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- Humans, Male, Cell Line, Tumor, Prostatic Neoplasms drug therapy, Prostatic Neoplasms pathology, Prostatic Neoplasms metabolism, Signal Transduction drug effects, Cell Survival drug effects, Antineoplastic Agents pharmacology, Cancer-Associated Fibroblasts metabolism, Cancer-Associated Fibroblasts drug effects, Coculture Techniques, Receptors, Fibroblast Growth Factor antagonists & inhibitors, Receptors, Fibroblast Growth Factor metabolism, Cell Proliferation drug effects
- Abstract
Background: Inhibition of androgen receptor (AR) signaling is the main treatment strategy in advanced prostate cancer (PCa). A subset of castration resistant prostate cancer (CRPC) bypasses the AR blockade by increased fibroblast growth factor receptor (FGFR) signaling. The first- and second-generation, non-covalent FGFR inhibitors (FGFRis) have largely failed in the clinical trials against PCa., Purpose: In this study, we tested the drug sensitivity of LNCaP, VCaP, and CWR-R1PCa cell lines to second-generation, covalent FGFRis (FIIN1, FIIN2) and a novel FGFR downstream molecule inhibitor (FRS2αi)., Methods: 2D and 3D mono- and co-cultures of cancer cells, and cancer-associated fibroblasts (CAFs) were used to mimic tumor-stroma interactions in the extracellular matrix (ECM). The treatment responses of the FGFR signaling molecules, the viability and proliferation of cancer cells, and CAFs were determined through immunoblotting, migration assay, cell viability assay, and real-time imaging. Immunofluorescent and confocal microscopy images of control and treated cultures of cancer cells and CAFs, and their morphometric data were deduced., Results: The FGFRis were more effective in mono-cultures of the cancer cells compared with co-cultures with CAFs. The FRS2αi was specifically effective in co-cultures with CAFs but was not cytotoxic to CAF mono-cultures as in the case of FIIN1 and FIIN2. At the molecular level, FRS2αi decreased p-FRS2α, p-ERK1/2, and activated apoptosis as monitored by cleaved caspase-3 activity in a concentration-dependent manner in the co-cultures. We observed no synergistic drug efficacy in the combination treatment of the FGFRi with ARi, enzalutamide, and darolutamide. The FRS2αi treatment led to a decrease in proliferation of cancer cell clusters in co-cultures as indicated by their reduced size and Ki67 expression., Conclusions: CAFs exert a protective effect on cancer cells and should be included in the in vitro models to make them physiologically more relevant in screening and testing of FGFRis. The FRS2αi was the most potent agent in reducing the viability and proliferation of the 3D organotypic co-cultures, mainly by disrupting the contact between CAFs and cancer cell clusters. The next-generation FGFRi, FRS2αi, may be a better alternative treatment option for overcoming ARi treatment resistance in advanced PCa., (© 2024 The Author(s). Cancer Medicine published by John Wiley & Sons Ltd.)
- Published
- 2024
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6. 3D Modeling of Epithelial Tumors-The Synergy between Materials Engineering, 3D Bioprinting, High-Content Imaging, and Nanotechnology.
- Author
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Trivedi P, Liu R, Bi H, Xu C, Rosenholm JM, and Åkerfelt M
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- Animals, Female, Humans, Male, Nanotechnology, Tissue Engineering, Bioprinting, Breast Neoplasms diagnostic imaging, Breast Neoplasms metabolism, Breast Neoplasms pathology, Models, Biological, Neoplasms, Glandular and Epithelial diagnostic imaging, Neoplasms, Glandular and Epithelial metabolism, Neoplasms, Glandular and Epithelial pathology, Organoids diagnostic imaging, Organoids metabolism, Organoids pathology, Printing, Three-Dimensional, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology
- Abstract
The current statistics on cancer show that 90% of all human cancers originate from epithelial cells. Breast and prostate cancer are examples of common tumors of epithelial origin that would benefit from improved drug treatment strategies. About 90% of preclinically approved drugs fail in clinical trials, partially due to the use of too simplified in vitro models and a lack of mimicking the tumor microenvironment in drug efficacy testing. This review focuses on the origin and mechanism of epithelial cancers, followed by experimental models designed to recapitulate the epithelial cancer structure and microenvironment, such as 2D and 3D cell culture models and animal models. A specific focus is put on novel technologies for cell culture of spheroids, organoids, and 3D-printed tissue-like models utilizing biomaterials of natural or synthetic origins. Further emphasis is laid on high-content imaging technologies that are used in the field to visualize in vitro models and their morphology. The associated technological advancements and challenges are also discussed. Finally, the review gives an insight into the potential of exploiting nanotechnological approaches in epithelial cancer research both as tools in tumor modeling and how they can be utilized for the development of nanotherapeutics.
- Published
- 2021
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7. CD73 facilitates EMT progression and promotes lung metastases in triple-negative breast cancer.
- Author
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Petruk N, Tuominen S, Åkerfelt M, Mattsson J, Sandholm J, Nees M, Yegutkin GG, Jukkola A, Tuomela J, and Selander KS
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- 5'-Nucleotidase genetics, Animals, Cell Line, Tumor, Female, GPI-Linked Proteins genetics, GPI-Linked Proteins metabolism, Humans, Lung Neoplasms genetics, Lung Neoplasms pathology, Lung Neoplasms secondary, Mammary Neoplasms, Animal genetics, Mammary Neoplasms, Animal pathology, Mice, Mice, Inbred BALB C, Neoplasm Metastasis, Neoplasm Proteins genetics, Triple Negative Breast Neoplasms genetics, Triple Negative Breast Neoplasms pathology, 5'-Nucleotidase metabolism, Epithelial-Mesenchymal Transition, Lung Neoplasms enzymology, Mammary Neoplasms, Animal enzymology, Neoplasm Proteins metabolism, Triple Negative Breast Neoplasms enzymology
- Abstract
CD73 is a cell surface ecto-5'-nucleotidase, which converts extracellular adenosine monophosphate to adenosine. High tumor CD73 expression is associated with poor outcome among triple-negative breast cancer (TNBC) patients. Here we investigated the mechanisms by which CD73 might contribute to TNBC progression. This was done by inhibiting CD73 with adenosine 5'-(α, β-methylene) diphosphate (APCP) in MDA-MB-231 or 4T1 TNBC cells or through shRNA-silencing (sh-CD73). Effects of such inhibition on cell behavior was then studied in normoxia and hypoxia in vitro and in an orthotopic mouse model in vivo. CD73 inhibition, through shRNA or APCP significantly decreased cellular viability and migration in normoxia. Inhibition of CD73 also resulted in suppression of hypoxia-induced increase in viability and prevented cell protrusion elongation in both normoxia and hypoxia in cancer cells. Sh-CD73 4T1 cells formed significantly smaller and less invasive 3D organoids in vitro, and significantly smaller orthotopic tumors and less lung metastases than control shRNA cells in vivo. CD73 suppression increased E-cadherin and decreased vimentin expression in vitro and in vivo, proposing maintenance of a more epithelial phenotype. In conclusion, our results suggest that CD73 may promote early steps of tumor progression, possibly through facilitating epithelial-mesenchymal transition.
- Published
- 2021
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8. Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells.
- Author
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Nassa G, Salvati A, Tarallo R, Gigantino V, Alexandrova E, Memoli D, Sellitto A, Rizzo F, Malanga D, Mirante T, Morelli E, Nees M, Åkerfelt M, Kangaspeska S, Nyman TA, Milanesi L, Giurato G, and Weisz A
- Subjects
- Animals, Cell Cycle Checkpoints, Cell Line, Tumor, Cell Proliferation drug effects, Chromatin genetics, Chromatin metabolism, Disease Models, Animal, Estrogen Receptor alpha metabolism, Female, Gene Expression Regulation, Neoplastic drug effects, Histone-Lysine N-Methyltransferase metabolism, Humans, Mice, Protein Binding, Signal Transduction drug effects, Transcription, Genetic, Xenograft Model Antitumor Assays, Breast Neoplasms metabolism, Drug Resistance, Neoplasm genetics, Estrogen Receptor Modulators pharmacology, Estrogen Receptor alpha genetics, Gene Silencing, Histone-Lysine N-Methyltransferase antagonists & inhibitors
- Abstract
Breast cancer (BC) resistance to endocrine therapy results from constitutively active or aberrant estrogen receptor α (ERα) signaling, and ways to block ERα pathway in these tumors are sought after. We identified the H3K79 methyltransferase DOT1L as a novel cofactor of ERα in BC cell chromatin, where the two proteins colocalize to regulate estrogen target gene transcription. DOT1L blockade reduces proliferation of hormone-responsive BC cells in vivo and in vitro, consequent to cell cycle arrest and apoptotic cell death, with widespread effects on ER-dependent gene transcription, including ERα and FOXA1 gene silencing. Antiestrogen-resistant BC cells respond to DOT1L inhibition also in mouse xenografts, with reduction in ERα levels, H3K79 methylation, and tumor growth. These results indicate that DOT1L is an exploitable epigenetic target for treatment of endocrine therapy-resistant ERα-positive BCs.
- Published
- 2019
- Full Text
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9. Factors Affecting Intracellular Delivery and Release of Hydrophilic Versus Hydrophobic Cargo from Mesoporous Silica Nanoparticles on 2D and 3D Cell Cultures.
- Author
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Desai D, Åkerfelt M, Prabhakar N, Toriseva M, Näreoja T, Zhang J, Nees M, and Rosenholm JM
- Abstract
Intracellular drug delivery by mesoporous silica nanoparticles (MSNs) carrying hydrophilic and hydrophobic fluorophores as model drug cargo is demonstrated on 2D cellular and 3D tumor organoid level. Two different MSN designs, chosen on the basis of the characteristics of the loaded cargo, were used: MSNs with a surface-grown poly(ethylene imine), PEI, coating only for hydrophobic cargo and MSNs with lipid bilayers covalently coupled to the PEI layer as a diffusion barrier for hydrophilic cargo. First, the effect of hydrophobicity corresponding to loading degree (hydrophobic cargo) as well as surface charge (hydrophilic cargo) on intracellular drug release was studied on the cellular level. All incorporated agents were able to release to varying degrees from the endosomes into the cytoplasm in a loading degree (hydrophobic) or surface charge (hydrophilic) dependent manner as detected by live cell imaging. When administered to organotypic 3D tumor models, the hydrophilic versus hydrophobic cargo-carrying MSNs showed remarkable differences in labeling efficiency, which in this case also corresponds to drug delivery efficacy in 3D. The obtained results could thus indicate design aspects to be taken into account for the development of efficacious intracellular drug delivery systems, especially in the translation from standard 2D culture to more biologically relevant organotypic 3D cultures.
- Published
- 2018
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10. Increased HSF1 expression predicts shorter disease-specific survival of prostate cancer patients following radical prostatectomy.
- Author
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Björk JK, Ahonen I, Mirtti T, Erickson A, Rannikko A, Bützow A, Nordling S, Lundin J, Lundin M, Sistonen L, Nees M, and Åkerfelt M
- Abstract
Prostate cancer is a highly heterogeneous disease and the clinical outcome is varying. While current prognostic tools are regarded insufficient, there is a critical need for markers that would aid prognostication and patient risk-stratification. Heat shock transcription factor 1 (HSF1) is crucial for cellular homeostasis, but also a driver of oncogenesis. The clinical relevance of HSF1 in prostate cancer is, however, unknown. Here, we identified HSF1 as a potential biomarker in mRNA expression datasets on prostate cancer. Clinical validation was performed on tissue microarrays from independent cohorts: one constructed from radical prostatectomies from 478 patients with long term follow-up, and another comprising of regionally advanced to distant metastatic samples. Associations with clinical variables and disease outcomes were investigated. Increased nuclear HSF1 expression correlated with disease advancement and aggressiveness and was, independently from established clinicopathological variables, predictive of both early initiation of secondary therapy and poor disease-specific survival. In a joint model with the clinical Cancer of the Prostate Risk Assessment post-Surgical (CAPRA-S) score, nuclear HSF1 remained a predictive factor of shortened disease-specific survival. The results suggest that nuclear HSF1 expression could serve as a novel prognostic marker for patient risk-stratification on disease progression and survival after radical prostatectomy., Competing Interests: CONFLICTS OF INTEREST The authors declare that they have no conflicts of interest.
- Published
- 2018
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11. Frizzled-8 integrates Wnt-11 and transforming growth factor-β signaling in prostate cancer.
- Author
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Murillo-Garzón V, Gorroño-Etxebarria I, Åkerfelt M, Puustinen MC, Sistonen L, Nees M, Carton J, Waxman J, and Kypta RM
- Subjects
- Activating Transcription Factor 2 metabolism, Cell Line, Tumor, Epithelial-Mesenchymal Transition, Gene Silencing, Humans, Male, Neoplasm Invasiveness, Neoplasm Metastasis, Prostatic Neoplasms pathology, Receptors, Cell Surface genetics, Receptors, Transforming Growth Factor beta metabolism, Smad Proteins metabolism, Prostatic Neoplasms metabolism, Receptors, Cell Surface metabolism, Signal Transduction, Transforming Growth Factor beta metabolism, Wnt Proteins metabolism
- Abstract
Wnt-11 promotes cancer cell migration and invasion independently of β-catenin but the receptors involved remain unknown. Here, we provide evidence that FZD
8 is a major Wnt-11 receptor in prostate cancer that integrates Wnt-11 and TGF-β signals to promote EMT. FZD8 mRNA is upregulated in multiple prostate cancer datasets and in metastatic cancer cell lines in vitro and in vivo. Analysis of patient samples reveals increased levels of FZD8 in cancer, correlating with Wnt-11. FZD8 co-localizes and co-immunoprecipitates with Wnt-11 and potentiates Wnt-11 activation of ATF2-dependent transcription. FZD8 silencing reduces prostate cancer cell migration, invasion, three-dimensional (3D) organotypic cell growth, expression of EMT-related genes, and TGF-β/Smad-dependent signaling. Mechanistically, FZD8 forms a TGF-β-regulated complex with TGF-β receptors that is mediated by the extracellular domains of FZD8 and TGFBR1. Targeting FZD8 may therefore inhibit aberrant activation of both Wnt and TGF-β signals in prostate cancer.- Published
- 2018
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12. A high-content image analysis approach for quantitative measurements of chemosensitivity in patient-derived tumor microtissues.
- Author
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Ahonen I, Åkerfelt M, Toriseva M, Oswald E, Schüler J, and Nees M
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- Automation, Laboratory methods, Docetaxel pharmacology, Humans, Antineoplastic Agents pharmacology, Carcinoma, Non-Small-Cell Lung drug therapy, Drug Screening Assays, Antitumor methods, Image Processing, Computer-Assisted methods, Microscopy, Confocal methods
- Abstract
Organotypic, three-dimensional (3D) cancer models have enabled investigations of complex microtissues in increasingly realistic conditions. However, a drawback of these advanced models remains the poor biological relevance of cancer cell lines, while higher clinical significance would be obtainable with patient-derived cell cultures. Here, we describe the generation and data analysis of 3D microtissue models from patient-derived xenografts (PDX) of non-small cell lung carcinoma (NSCLC). Standard of care anti-cancer drugs were applied and the altered multicellular morphologies were captured by confocal microscopy, followed by automated image analyses to quantitatively measure phenotypic features for high-content chemosensitivity tests. The obtained image data were thresholded using a local entropy filter after which the image foreground was split into local regions, for a supervised classification into tumor or fibroblast cell types. Robust statistical methods were applied to evaluate treatment effects on growth and morphology. Both novel and existing computational approaches were compared at each step, while prioritizing high experimental throughput. Docetaxel was found to be the most effective drug that blocked both tumor growth and invasion. These effects were also validated in PDX tumors in vivo. Our research opens new avenues for high-content drug screening based on patient-derived cell cultures, and for personalized chemosensitivity testing.
- Published
- 2017
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13. Quantitative Phenotypic Image Analysis of Three-Dimensional Organotypic Cultures.
- Author
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Åkerfelt M, Toriseva M, and Nees M
- Subjects
- Cell Line, Tumor, Cell Proliferation, Epithelial Cells cytology, Epithelial Cells metabolism, Epithelial Cells pathology, Epithelial-Mesenchymal Transition, Extracellular Matrix metabolism, Humans, Organoids metabolism, Organoids pathology, Phenotype, Software, Tumor Microenvironment, Cell Culture Techniques methods, Image Processing, Computer-Assisted methods, Organoids cytology
- Abstract
Glandular epithelial cells differentiate into three-dimensional (3D) multicellular or acinar structures, particularly when embedded in laminin-rich extracellular matrix (ECM). The spectrum of different multicellular morphologies formed in 3D is a reliable indicator for the differentiation potential of normal, non-transformed cells compared to different stages of malignant progression. Motile cancer cells may actively invade the matrix, utilizing epithelial, mesenchymal, or mixed modes of motility. Dynamic phenotypic changes involved in 3D tumor cell invasion are also very sensitive to small-molecule inhibitors that, e.g., target the actin cytoskeleton. Our strategy is to recapitulate the formation and the histology of complex solid cancer tissues in vitro, based on cell culture technologies that promote the intrinsic differentiation potential of normal and transformed epithelial cells, and also including stromal fibroblasts and other key components of the tumor microenvironment. We have developed a streamlined stand-alone software solution that supports the detailed quantitative phenotypic analysis of organotypic 3D cultures. This approach utilizes the power of automated image analysis as a phenotypic readout in cell-based assays. AMIDA (Automated Morphometric Image Data Analysis) allows quantitative measurements of a large number of multicellular structures, which can form a multitude of different organoid shapes, sizes, and textures according to their capacity to engage in epithelial differentiation programs or not. At the far end of this spectrum of tumor-relevant differentiation properties, there are highly invasive tumor cells or multicellular structures that may rapidly invade the surrounding ECM, but fail to form higher-order epithelial tissue structures. Furthermore, this system allows us to monitor dynamic changes that can result from the extraordinary plasticity of tumor cells, e.g., epithelial-to-mesenchymal transition in live cell settings. Furthermore, AMIDA supports an automated workflow, and can be combined with quality control and statistical tools for data interpretation and visualization. Our approach supports the growing needs for user-friendly, straightforward solutions that facilitate cell-based organotypic 3D assays in basic research, drug discovery, and target validation.
- Published
- 2017
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14. Correction: Validation of Novel Biomarkers for Prostate Cancer Progression by the Combination of Bioinformatics, Clinical and Functional Studies.
- Author
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Alinezhad S, Väänänen RM, Mattsson J, Li Y, Tallgrén T, Tong Ochoa N, Bjartell A, Åkerfelt M, Taimen P, Boström PJ, Pettersson K, and Nees M
- Abstract
[This corrects the article DOI: 10.1371/journal.pone.0155901.].
- Published
- 2016
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15. Validation of Novel Biomarkers for Prostate Cancer Progression by the Combination of Bioinformatics, Clinical and Functional Studies.
- Author
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Alinezhad S, Väänänen RM, Mattsson J, Li Y, Tallgrén T, Tong Ochoa N, Bjartell A, Åkerfelt M, Taimen P, Boström PJ, Pettersson K, and Nees M
- Subjects
- 1-Alkyl-2-acetylglycerophosphocholine Esterase genetics, 1-Alkyl-2-acetylglycerophosphocholine Esterase metabolism, Aged, Biomarkers, Tumor genetics, Calcium Channels, L-Type genetics, Calcium Channels, L-Type metabolism, Coenzyme A Ligases genetics, Coenzyme A Ligases metabolism, Gene Expression Regulation, Neoplastic, Homeodomain Proteins genetics, Humans, Laminin genetics, Laminin metabolism, Male, Middle Aged, Prostatic Neoplasms genetics, Prostatic Neoplasms pathology, RNA Interference, Transcription Factors genetics, rho GTP-Binding Proteins genetics, Biomarkers, Tumor metabolism, Homeodomain Proteins metabolism, Prostatic Neoplasms metabolism, Transcription Factors metabolism, rho GTP-Binding Proteins metabolism
- Abstract
The identification and validation of biomarkers for clinical applications remains an important issue for improving diagnostics and therapy in many diseases, including prostate cancer. Gene expression profiles are routinely applied to identify diagnostic and predictive biomarkers or novel targets for cancer. However, only few predictive markers identified in silico have also been validated for clinical, functional or mechanistic relevance in disease progression. In this study, we have used a broad, bioinformatics-based approach to identify such biomarkers across a spectrum of progression stages, including normal and tumor-adjacent, premalignant, primary and late stage lesions. Bioinformatics data mining combined with clinical validation of biomarkers by sensitive, quantitative reverse-transcription PCR (qRT-PCR), followed by functional evaluation of candidate genes in disease-relevant processes, such as cancer cell proliferation, motility and invasion. From 300 initial candidates, eight genes were selected for validation by several layers of data mining and filtering. For clinical validation, differential mRNA expression of selected genes was measured by qRT-PCR in 197 clinical prostate tissue samples including normal prostate, compared against histologically benign and cancerous tissues. Based on the qRT-PCR results, significantly different mRNA expression was confirmed in normal prostate versus malignant PCa samples (for all eight genes), but also in cancer-adjacent tissues, even in the absence of detectable cancer cells, thus pointing to the possibility of pronounced field effects in prostate lesions. For the validation of the functional properties of these genes, and to demonstrate their putative relevance for disease-relevant processes, siRNA knock-down studies were performed in both 2D and 3D organotypic cell culture models. Silencing of three genes (DLX1, PLA2G7 and RHOU) in the prostate cancer cell lines PC3 and VCaP by siRNA resulted in marked growth arrest and cytotoxicity, particularly in 3D organotypic cell culture conditions. In addition, silencing of PLA2G7, RHOU, ACSM1, LAMB1 and CACNA1D also resulted in reduced tumor cell invasion in PC3 organoid cultures. For PLA2G7 and RHOU, the effects of siRNA silencing on proliferation and cell-motility could also be confirmed in 2D monolayer cultures. In conclusion, DLX1 and RHOU showed the strongest potential as useful clinical biomarkers for PCa diagnosis, further validated by their functional roles in PCa progression. These candidates may be useful for more reliable identification of relapses or therapy failures prior to the recurrence local or distant metastases.
- Published
- 2016
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16. Segmentation of Image Data from Complex Organotypic 3D Models of Cancer Tissues with Markov Random Fields.
- Author
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Robinson S, Guyon L, Nevalainen J, Toriseva M, Åkerfelt M, and Nees M
- Subjects
- Cell Line, Tumor, Coculture Techniques, Humans, Image Interpretation, Computer-Assisted methods, Male, Markov Chains, Microscopy, Fluorescence, Multiphoton, Models, Biological, Imaging, Three-Dimensional statistics & numerical data, Prostatic Neoplasms pathology
- Abstract
Organotypic, three dimensional (3D) cell culture models of epithelial tumour types such as prostate cancer recapitulate key aspects of the architecture and histology of solid cancers. Morphometric analysis of multicellular 3D organoids is particularly important when additional components such as the extracellular matrix and tumour microenvironment are included in the model. The complexity of such models has so far limited their successful implementation. There is a great need for automatic, accurate and robust image segmentation tools to facilitate the analysis of such biologically relevant 3D cell culture models. We present a segmentation method based on Markov random fields (MRFs) and illustrate our method using 3D stack image data from an organotypic 3D model of prostate cancer cells co-cultured with cancer-associated fibroblasts (CAFs). The 3D segmentation output suggests that these cell types are in physical contact with each other within the model, which has important implications for tumour biology. Segmentation performance is quantified using ground truth labels and we show how each step of our method increases segmentation accuracy. We provide the ground truth labels along with the image data and code. Using independent image data we show that our segmentation method is also more generally applicable to other types of cellular microscopy and not only limited to fluorescence microscopy.
- Published
- 2015
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17. Automated tracking of tumor-stroma morphology in microtissues identifies functional targets within the tumor microenvironment for therapeutic intervention.
- Author
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Åkerfelt M, Bayramoglu N, Robinson S, Toriseva M, Schukov HP, Härmä V, Virtanen J, Sormunen R, Kaakinen M, Kannala J, Eklund L, Heikkilä J, and Nees M
- Subjects
- Algorithms, Cell Communication drug effects, Cell Line, Cell Line, Tumor, Cell Movement drug effects, Cell Proliferation drug effects, Coculture Techniques, Collagen metabolism, Fibroblasts cytology, Fibroblasts metabolism, Fibroblasts ultrastructure, Focal Adhesion Protein-Tyrosine Kinases antagonists & inhibitors, Focal Adhesion Protein-Tyrosine Kinases metabolism, Granulocyte-Macrophage Colony-Stimulating Factor pharmacology, Humans, Male, Microscopy, Confocal, Microscopy, Electron, Transmission, Models, Biological, Prostatic Neoplasms metabolism, Prostatic Neoplasms pathology, Prostatic Neoplasms ultrastructure, Protein Kinase Inhibitors pharmacology, Cell Culture Techniques methods, Cell Tracking methods, Time-Lapse Imaging methods, Tumor Microenvironment
- Abstract
Cancer-associated fibroblasts (CAFs) constitute an important part of the tumor microenvironment and promote invasion via paracrine functions and physical impact on the tumor. Although the importance of including CAFs into three-dimensional (3D) cell cultures has been acknowledged, computational support for quantitative live-cell measurements of complex cell cultures has been lacking. Here, we have developed a novel automated pipeline to model tumor-stroma interplay, track motility and quantify morphological changes of 3D co-cultures, in real-time live-cell settings. The platform consists of microtissues from prostate cancer cells, combined with CAFs in extracellular matrix that allows biochemical perturbation. Tracking of fibroblast dynamics revealed that CAFs guided the way for tumor cells to invade and increased the growth and invasiveness of tumor organoids. We utilized the platform to determine the efficacy of inhibitors in prostate cancer and the associated tumor microenvironment as a functional unit. Interestingly, certain inhibitors selectively disrupted tumor-CAF interactions, e.g. focal adhesion kinase (FAK) inhibitors specifically blocked tumor growth and invasion concurrently with fibroblast spreading and motility. This complex phenotype was not detected in other standard in vitro models. These results highlight the advantage of our approach, which recapitulates tumor histology and can significantly improve cancer target validation in vitro.
- Published
- 2015
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18. Quantification of dynamic morphological drug responses in 3D organotypic cell cultures by automated image analysis.
- Author
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Härmä V, Schukov HP, Happonen A, Ahonen I, Virtanen J, Siitari H, Åkerfelt M, Lötjönen J, and Nees M
- Subjects
- Cell Line, Tumor, Epithelial Cells cytology, Extracellular Matrix metabolism, Humans, Cell Differentiation drug effects, Cell Movement drug effects, Cell Proliferation drug effects, Cell Shape drug effects, Epithelial Cells drug effects, Image Processing, Computer-Assisted methods
- Abstract
Glandular epithelial cells differentiate into complex multicellular or acinar structures, when embedded in three-dimensional (3D) extracellular matrix. The spectrum of different multicellular morphologies formed in 3D is a sensitive indicator for the differentiation potential of normal, non-transformed cells compared to different stages of malignant progression. In addition, single cells or cell aggregates may actively invade the matrix, utilizing epithelial, mesenchymal or mixed modes of motility. Dynamic phenotypic changes involved in 3D tumor cell invasion are sensitive to specific small-molecule inhibitors that target the actin cytoskeleton. We have used a panel of inhibitors to demonstrate the power of automated image analysis as a phenotypic or morphometric readout in cell-based assays. We introduce a streamlined stand-alone software solution that supports large-scale high-content screens, based on complex and organotypic cultures. AMIDA (Automated Morphometric Image Data Analysis) allows quantitative measurements of large numbers of images and structures, with a multitude of different spheroid shapes, sizes, and textures. AMIDA supports an automated workflow, and can be combined with quality control and statistical tools for data interpretation and visualization. We have used a representative panel of 12 prostate and breast cancer lines that display a broad spectrum of different spheroid morphologies and modes of invasion, challenged by a library of 19 direct or indirect modulators of the actin cytoskeleton which induce systematic changes in spheroid morphology and differentiation versus invasion. These results were independently validated by 2D proliferation, apoptosis and cell motility assays. We identified three drugs that primarily attenuated the invasion and formation of invasive processes in 3D, without affecting proliferation or apoptosis. Two of these compounds block Rac signalling, one affects cellular cAMP/cGMP accumulation. Our approach supports the growing needs for user-friendly, straightforward solutions that facilitate large-scale, cell-based 3D assays in basic research, drug discovery, and target validation.
- Published
- 2014
- Full Text
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