1,590 results on '"timeless"'
Search Results
402. Phosphatase of Regenerating Liver-1 Selectively Times Circadian Behavior in Darkness via Function in PDF Neurons and Dephosphorylation of TIMELESS
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Hee Kyung Hong, Ima Samba, Michael Rosbash, Daniel C. Levine, Da Hyun Lee, Bridget C. Lear, Joseph Bass, Elzbieta Kula-Eversole, Ravi Allada, and Evrim Yildirim
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Male ,0301 basic medicine ,endocrine system ,Time Factors ,Timeless ,Photoperiod ,Period (gene) ,Phosphatase ,Circadian clock ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Animals, Genetically Modified ,Dephosphorylation ,03 medical and health sciences ,0302 clinical medicine ,Animals ,Drosophila Proteins ,Circadian rhythm ,Phosphorylation ,Neurons ,Neuropeptides ,Darkness ,Circadian Rhythm ,Cell biology ,Drosophila melanogaster ,030104 developmental biology ,Gene Knockdown Techniques ,Mutation ,Female ,Protein Tyrosine Phosphatases ,General Agricultural and Biological Sciences ,hormones, hormone substitutes, and hormone antagonists ,030217 neurology & neurosurgery - Abstract
The timing of behavior under natural light-dark conditions is a function of circadian clocks and photic input pathways. Yet a mechanistic understanding of how these pathways collaborate in animals is lacking. Here we demonstrate in Drosophila that the Phosphatase of Regenerating Liver-1 (PRL-1) sets period length and behavioral phase gated by photic signals. PRL-1 knockdown in PDF clock neurons dramatically lengthens circadian period. PRL-1 mutants exhibit allele-specific interactions with the light- and clock-regulated gene timeless (tim). Moreover, we show that PRL-1 promotes TIM accumulation and dephosphorylation. Interestingly, the PRL-1 mutant period lengthening is suppressed in constant light and PRL-1 mutants display a delayed phase under short, but not long, photoperiod conditions. Thus, our studies reveal that PRL-1 dependent dephosphorylation of TIM is a core mechanism of the clock that sets period length and phase in darkness, enabling the behavioral adjustment to changing day-night cycles.
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- 2021
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403. Timeless protection of telomeres
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Gadaleta, Mariana C., González-Medina, Alberto, and Noguchi, Eishi
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- 2016
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404. Healthy Living: The Universal and Timeless Medicine for Healthspan
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Amy McNeil, Carl J. Lavie, Michael Sagner, and Ross Arena
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Gerontology ,business.industry ,Timeless ,MEDLINE ,Disease Management ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Phenotype ,0302 clinical medicine ,Cardiovascular Diseases ,Humans ,Medicine ,Healthy Lifestyle ,030212 general & internal medicine ,Disease management (health) ,Cardiology and Cardiovascular Medicine ,business - Published
- 2017
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405. New Capital Cities: A Timeless Mega-project of Intercontinental Presence
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Mohamed Tamer Elkhorazaty, Hebatullah Ghalib, and Yehya Serag
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Economy ,Timeless ,Capital (economics) ,Political science ,Mega - Abstract
Mega-projects are projects that require immense resources to create. This includes all different aspects; funding, labour, etc. These projects are meant to create a massive effect on the city or national level through providing job opportunities during construction as well as after completion. Moreover, these projects usually have an intercontinental effect that echoes worldwide and may affect other projects, cities or even countries either positively or negatively. Mega-projects are not restricted to certain project typologies; in fact they range from Olympic cities to water dams and channels. We can even claim that the first mega-project was the great pyramid. Mega-projects can also be linked to mega-events thus achieving more international acknowledgement. This paper discusses the creation of new capital cities as a mega-project typology. It analyzes different examples worldwide where a new capital city was created to act as a mega-project that would create ripples of economic and urban development through a country. The capitals of Brazil, Kazakhstan and Egypt are studied to display the authors view of them as mega-projects that have the same function but span across time, space and cultures.
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- 2020
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406. Our ever-changing star
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Chanda Prescod-Weinstein
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Multidisciplinary ,History ,Timeless ,Star (game theory) ,Astronomy - Abstract
The sun may seem timeless, but it is constantly evolving and is already halfway through its life, says Chanda Prescod-Weinstein
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- 2020
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407. Introduction
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Holly Van Leuven
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Literature ,business.industry ,Timeless ,media_common.quotation_subject ,Art ,business ,media_common - Abstract
Ray Bolger was called an amiable fellow with a chinless profile, skittish feet, and a snickering spirit. At five feet, ten and one-half inches, he weighed between 135 and 140 pounds at any given time and was said to be skinnier than even Frank Sinatra. After an evening of dancing on Broadway, he could come off the stage as much as three pounds lighter, his dark brown hair blackened with sweat. “His face and body acquire their unusually eccentric quality only when he’s on a stage,” wrote show business reporter Maurice Zolotow. “Otherwise he’s quite nondescript.” Bolger himself said, “I look like everyone’s second cousin. I don’t look like Ray Bolger.”...
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- 2019
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408. ‘Ever fresh and fascinating to the boy and girl of today’: the timeless child and the childish medieval in nineteenth-century Arthuriana
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Elly McCausland
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Literature ,business.industry ,Timeless ,media_common.quotation_subject ,Art ,Girl ,business ,media_common - Published
- 2019
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409. Curriculum, Pedagogy, and Technology Have All Changed, But the Qualities of Great Teachers Are – and Always Will Be – Timeless
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Todd Whitaker and Danny Steele
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Timeless ,Pedagogy ,Sociology ,Curriculum - Published
- 2019
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410. An overview of the polymorphisms of circadian genes associated with endocrine cancer
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Sonia Morales-Santana, Santiago Morell, Josefa Leon, Angel Carazo-Gallego, Jose C. Jimenez-Lopez, María Morell, Ministerio de Economía, Industria y Competitividad (España), Consejo Superior de Investigaciones Científicas (España), and European Commission
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0301 basic medicine ,Timeless ,Mini Review ,Endocrinology, Diabetes and Metabolism ,Period (gene) ,pancreatic cancer ,Circadian clock ,Circadian clock genes ,Endocrine cancer ,circadian clock genes ,030209 endocrinology & metabolism ,Biology ,Bioinformatics ,lcsh:Diseases of the endocrine glands. Clinical endocrinology ,Thyroid cancer ,polymorphism ,03 medical and health sciences ,Endocrinology ,breast cancer ,0302 clinical medicine ,Breast cancer ,Ovarian cancer ,thyroid cancer ,Circadian rhythm ,Polymorphism ,lcsh:RC648-665 ,Prostate cancer ,endocrine cancer ,Pancreatic cancer ,prostate cancer ,3. Good health ,PER2 ,ARNTL ,PER3 ,ovarian cancer ,030104 developmental biology ,PER1 - Abstract
A major consequence of the world industrialized lifestyle is the increasing period of unnatural light in environments during the day and artificial lighting at night. This major change disrupts endogenous homeostasis with external circadian cues, which has been associated to higher risk of diseases affecting human health, mainly cancer among others. Circadian disruption promotes tumor development and accelerate its fast progression. The dysregulation mechanisms of circadian genes is greatly affected by the genetic variability of these genes. To date, several core circadian genes, also called circadian clock genes, have been identified, comprising the following: ARNTL, CLOCK, CRY1, CRY2, CSNK1E, NPAS2, NR1D1, NR1D2, PER1, PER2, PER3, RORA, and TIMELESS. The polymorphic variants of these circadian genes might contribute to an individual's risk to cancer. In this short review, we focused on clock circadian clock-related genes, major contributors of the susceptibility to endocrine-dependent cancers through affecting circadian clock, most likely affecting hormonal regulation. We examined polymorphisms affecting breast, prostate and ovarian carcinogenesis, in addition to pancreatic and thyroid cancer. Further study of the genetic composition in circadian clock-controlled tumors will be of great importance by establishing the foundation to discover novel genetic biomarkers for cancer prevention, prognosis and target therapies., SM-S would like to thank the grant awards from SEIOMM (2017) and SEEN (2018). JJ-L was funded by a Ramon y Cajal Research Program from the Spanish Ministry of Economy, Industry and Competitiveness (grant ref. number YC-2014-16536); the grant ref. BFU2016-77243-P; by the CSIC—intramural grant ref. 201540E065; and by the EU Marie Curie Research Program FP7-PEOPLE-2011-IOF, grant ref. PIOF-GA-2011-301550. All authors thank Michela Verbeni for the English language edition performed on the manuscript.
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- 2019
411. Capturing the Best Urban Diary Examples
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Charles R. Wolfe
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Expression (architecture) ,Aesthetics ,Timeless ,Cultural context ,Context (language use) ,Urbanism - Abstract
Following the approach of the urban diary discussed in chapter 2, and expanded upon in Seeing the Better City, this chapter presents reflective vignettes of varying lengths, based on my collection of photographs and observations of local and international examples. These vignettes demonstrate how urbanism without effort is premised on common human affinities and varied in expression by cultural context, historical circumstance, and other unique factors, such as geography and climate. They demonstrate the challenges of creating livable cities that are universal and timeless, and how solutions require careful observation in the context of local circumstances.
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- 2019
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412. The Timeless Solution
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Aldo Frigerio and Ciro De Florio
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Dilemma ,Timeless ,Philosophy ,Interpretation (philosophy) ,Metaphysics ,Fragmentalism ,Foreknowledge ,Epistemology - Abstract
In this last chapter, we consider the timeless solutions to the dilemma of foreknowledge. In particular, in the first part, we present the Timeless Eternalist view, in which a timeless God eternally sees a world as it is described by a B-theory of time. In the second part, we develop an original account, which we call Perspectival Fragmentalism: this view adopts a particular perspectival framework for the interpretation of the propositions, and it assumes a robust, dynamic, conception of time. The background metaphysics is inspired by Kit Fine’s Fragmentalism.
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- 2019
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413. Tribute to a Timeless Scholar with a Brilliant Mind and a Bountiful Heart
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A. Parasuraman
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Timeless ,media_common.quotation_subject ,Tribute ,Art history ,Art ,media_common - Published
- 2019
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414. Dissecting the Genetic Basis of Variation in Drosophila Sleep Using a Multiparental QTL Mapping Resource
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Brittny R. Smith and Stuart J. Macdonald
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MPP ,0301 basic medicine ,lcsh:QH426-470 ,QTL ,Timeless ,Population ,Computational biology ,Quantitative trait locus ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,sleep ,education ,Genetics (clinical) ,education.field_of_study ,biology ,activity ,DSPR ,expression QTL ,biology.organism_classification ,Sleep in non-human animals ,Phenotype ,lcsh:Genetics ,Drosophila ,030104 developmental biology ,Expression quantitative trait loci ,Drosophila melanogaster ,030217 neurology & neurosurgery - Abstract
There is considerable variation in sleep duration, timing and quality in human populations, and sleep dysregulation has been implicated as a risk factor for a range of health problems. Human sleep traits are known to be regulated by genetic factors, but also by an array of environmental and social factors. These uncontrolled, non-genetic effects complicate powerful identification of the loci contributing to sleep directly in humans. The model system, Drosophila melanogaster, exhibits a behavior that shows the hallmarks of mammalian sleep, and here we use a multitiered approach, encompassing high-resolution QTL mapping, expression QTL data, and functional validation with RNAi to investigate the genetic basis of sleep under highly controlled environmental conditions. We measured a battery of sleep phenotypes in >, 750 genotypes derived from a multiparental mapping panel and identified several, modest-effect QTL contributing to natural variation for sleep. Merging sleep QTL data with a large head transcriptome eQTL mapping dataset from the same population allowed us to refine the list of plausible candidate causative sleep loci. This set includes genes with previously characterized effects on sleep and circadian rhythms, in addition to novel candidates. Finally, we employed adult, nervous system-specific RNAi on the Dopa decarboxylase, dyschronic, and timeless genes, finding significant effects on sleep phenotypes for all three. The genes we resolve are strong candidates to harbor causative, regulatory variation contributing to sleep.
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- 2020
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415. TIMELESS-dependent positive and negative autoregulation in the Drosophila circadian clock.
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Suri, Vipin, Lanjun, Anne, and Rosbash, Michael
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PROTEINS , *CARDIAC pacemakers , *DROSOPHILA melanogaster , *OSCILLATIONS , *MESSENGER RNA , *GENETIC transcription - Abstract
The timeless protein (TIM) is a central component of the circadian pacemaker machinery of the fruitfly Drosophila melanogaster. Both TIM and its partner protein, the period protein PER, show robust circadian oscillations in mRNA and protein levels. Yet the role of TIM in the rhythm generation mechanism is largely unknown. To analyze TIM function, we constructed transgenic flies that carry a heat shock-inducible copy of the timeless gene (tim) in an arrhythmic tim loss-of-function genetic background. When heat shocked, TIM levels in these flies rapidly increased and initiated a molecular cycle of PER accumulation and processing with dynamics very similar to the PER cycle observed in wild-type flies. Analysis of period (per) mRNA levels and transcription uncovered a novel role for TIM in clock regulation: TIM increases per mRNA levels through a post-transcriptional mechanism. Our results suggest positive as well as negative autoregulation in the Drosophila circadian clock. [ABSTRACT FROM AUTHOR]
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- 1999
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416. Thermosensitive alternative splicing senses and mediates temperature adaptation in Drosophila
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Osnat Bartok, Ines Lucia Patop, Ron Weiss, Sebastian Kadener, Naveh Evantal, and Ane Martin Anduaga
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Gene isoform ,QH301-705.5 ,Timeless ,Science ,timeless ,Circadian clock ,Motor Activity ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Animals, Genetically Modified ,splicing ,Transcription (biology) ,Circadian Clocks ,Animals ,Drosophila Proteins ,Protein Isoforms ,Circadian rhythm ,Biology (General) ,General Immunology and Microbiology ,D. melanogaster ,General Neuroscience ,Gene Expression Profiling ,Alternative splicing ,Intron ,temperature ,General Medicine ,Adaptation, Physiological ,Circadian Rhythm ,Cell biology ,CLOCK ,Alternative Splicing ,MicroRNAs ,Drosophila melanogaster ,circadian ,RNA splicing ,RNA ,Medicine ,Research Article ,Neuroscience - Abstract
SUMMARYCircadian rhythms are generated by the cyclic transcription, translation and degradation of clock genes, includingtimeless(tim). Currently, little is known about the mechanisms by which the circadian clock senses and adapts to temperature changes. Here we show that temperature dramatically changes the splicing pattern oftim. We found that at 18°C TIM protein levels are diminished due to the induction of two cold-specific splicing isoforms (tim-coldandtim-short&cold). At 29°C, another isoform,tim-Mediumis strongly upregulated. We found that this isoform switching mechanism allows flies to regulate the levels and activity of TIM by setting miRNA-dependent thresholds for expression as well as by expressing isoforms with specific functions. Flies in which the production oftim-short&coldis abrogated display altered patterns of locomotor activity and alteredtimexpression. Interestingly, the introns oftimcarry the information for the temperature sensitivity, suggesting thattimsplicingper seis the temperature sensor.
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- 2018
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417. PSI controls tim splicing and circadian period in Drosophila
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Lauren E. Foley, Sebastian Kadener, Jinli Ling, Patrick Emery, Radhika S. Joshi, and Naveh Evantal
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Timeless ,RNA interference ,Period (gene) ,Alternative splicing ,RNA splicing ,RNA ,Circadian rhythm ,Biology ,Gene ,Cell biology - Abstract
The Drosophila circadian pacemaker consists of transcriptional feedback loops subjected to both post-transcriptional and post-translational regulation. While post-translational regulatory mechanisms have been studied in detail, much less is known about circadian post-transcriptional control. To have a better understanding of the role and mechanisms of circadian post-transcriptional regulation, we targeted 364 RNA binding and RNA associated proteins with RNA interference. Among the 43 genes we identified was the alternative splicing regulator P-element somatic inhibitor (PSI). PSI downregulation shortens the period of circadian rhythms both in the brain and in peripheral tissues. Interestingly, we found that PSI regulates the thermosensitive alternative splicing of timeless (tim), promoting splicing events favored at warm temperature over those increased at cold temperature. Moreover, the period of circadian behavior was insensitive to PSI downregulation when flies could produce functional TIM proteins only from a transgene that cannot form the thermosensitive splicing isoforms. Therefore, we conclude that PSI regulates the period of Drosophila circadian rhythms through its modulation of the tim splicing pattern.
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- 2018
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418. Prolegomena: The Bhagavad Gītā: A Timeless Manual for Self-Mastery and Leadership
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Satinder Dhiman
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Self mastery ,Self-realization ,Timeless ,Self-awareness ,Relevance (information retrieval) ,Psychology ,Epistemology ,Subject matter - Abstract
The Bhagavad Gitā literally means the “Song of the Supreme Being.” This opening chapter introduces the Bhagavad Gitā as a timeless manual for Self-mastery and leadership. After briefly recounting the author’s preparation for this book, it offers pointers on how to approach the teachings of the Gitā. It lays out the setting by providing an overview of the subject matter of the Gitā and its relevance for contemporary leaders and organizations. Additionally, it provides a synoptic overview of all the chapters of this book. Each chapter of the book is presented integrally as an independent whole, and yet the teachings of the Gitā are unfolded in a progressive manner.
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- 2018
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419. McTaggart’s Timeless World
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Gerald Rochelle
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Literature ,business.industry ,Timeless ,Philosophy ,business - Published
- 2018
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420. Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila
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Soumyashant Nayak, Gregory R. Grant, Amita Sehgal, and Iryna Shakhmantsir
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0301 basic medicine ,Spliceosome ,Timeless ,QH301-705.5 ,Science ,Circadian clock ,timeless ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,splicing ,CLOCK Proteins ,Biology (General) ,General Immunology and Microbiology ,General Neuroscience ,Alternative splicing ,molecular clock ,General Medicine ,Cell biology ,CLOCK ,030104 developmental biology ,circadian rhythms ,RNA splicing ,Medicine ,Drosophila ,feedback loop ,Small nuclear ribonucleoprotein - Abstract
Transcription-translation feedback loops that comprise eukaryotic circadian clocks rely upon temporal delays that separate the phase of active transcription of clock genes, such as Drosophila period (per) and timeless (tim), from negative feedback by the two proteins. However, our understanding of the mechanisms involved is incomplete. Through an RNA interference screen, we found that pre-mRNA processing 4 (PRP4) kinase, a component of the U4/U5.U6 triple small nuclear ribonucleoprotein (tri-snRNP) spliceosome, and other tri-snRNP components regulate cycling of the molecular clock as well as rest:activity rhythms. Unbiased RNA-Sequencing uncovered an alternatively spliced intron in tim whose increased retention upon prp4 downregulation leads to decreased TIM levels. We demonstrate that the splicing of tim is rhythmic with a phase that parallels delayed accumulation of the protein in a 24 hr cycle. We propose that alternative splicing constitutes an important clock mechanism for delaying the daily accumulation of clock proteins, and thereby negative feedback by them.Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).
- Published
- 2018
421. Nipped-A regulates the Drosophila circadian clock via histone deubiquitination
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Liubin Zheng, Luoying Zhang, Bei Bu, Lixia Chen, and Weiwei He
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Male ,Timeless ,Circadian clock ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Epigenesis, Genetic ,Histones ,03 medical and health sciences ,0302 clinical medicine ,Circadian Clocks ,Histone H2B ,Animals ,Drosophila Proteins ,Acetyltransferase complex ,Circadian rhythm ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,General Immunology and Microbiology ,Deubiquitinating Enzymes ,General Neuroscience ,Ubiquitination ,Articles ,Cell biology ,CLOCK ,Histone deubiquitination ,Basic-Leucine Zipper Transcription Factors ,Drosophila melanogaster ,Protein Processing, Post-Translational ,030217 neurology & neurosurgery ,Deubiquitination ,Transcription Factors - Abstract
Psychiatric diseases are often accompanied by circadian disruptions, but the molecular underpinnings remain largely unclear. To address this, we screened genes that have been previously reported to be associated with psychiatric diseases and found that TRRAP, a gene associated with schizophrenia, is involved in circadian rhythm regulation. Knocking down Nipped-A, the Drosophila homolog of human TRRAP, leads to lengthened period of locomotor rhythms in flies. Molecular analysis demonstrates that NIPPED-A sets the pace of the clock by increasing the mRNA and protein levels of core clock genes timeless (tim) and Par domain protein 1e (Pdp1e). Furthermore, we found that NIPPED-A promotes the transcription of tim and Pdp1e possibly by facilitating deubiquitination of histone H2B via the deubiquitination module of the transcription co-activator Spt-Ada-Gcn5 acetyltransferase complex. Taken together, these findings reveal a novel role for NIPPED-A in epigenetic regulation of the clock.
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- 2018
422. Finding Home: Paule Marshall’s 'The Chosen Place, the Timeless People'
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Yuri Stulov
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lcsh:Language and Literature ,Linguistics and Language ,Literature and Literary Theory ,Timeless ,Communication ,media_common.quotation_subject ,lcsh:P ,Art history ,nėra ,Art ,Language and Linguistics ,media_common - Abstract
[straipsnis ir santrauka anglų kalba]
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- 2018
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423. Author response: Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila
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Amita Sehgal, Iryna Shakhmantsir, Gregory R. Grant, and Soumyashant Nayak
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Messenger RNA ,Spliceosome ,Timeless ,Circadian rhythm ,Biology ,Drosophila (subgenus) ,biology.organism_classification ,Cell biology - Published
- 2018
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424. Genetic association of circadian clock genes and the risk of childhood asthma
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Paulina Sobkowiak, Monika Dmitrzak-Weglarz, Aleksandra Szczepankiewicz, Irena Wojsyk-Banaszak, Wojciech Langwiński, Anna Bręborowicz, and Beata Narozna
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education.field_of_study ,Candidate gene ,business.industry ,Haploview ,Timeless ,Population ,Circadian clock ,medicine.disease ,respiratory tract diseases ,PER3 ,Immunology ,medicine ,Circadian rhythm ,business ,education ,Asthma - Abstract
Background: Asthma is a chronic respiratory disease characterized by diurnal oscillations of symptoms severity with the highest intensity at 4 a.m. and improvement at 4 p.m. The underlying cause may be central circadian clock dysregulation that also controls the target tissues such as lungs. We hypothesized that altered circadian regulation in asthma may result from circadian clock genes variants. This study aimed to investigate the possible association of genetic variants of core circadian clock genes and asthma risk in the population of Polish children. Methods: In the study we included 165 asthmatic patients and 138 healthy children. Asthma diagnosis was based on GINA 2006 guidelines. In the control group, asthma and allergic disease were excluded based on clinical examination and lung function testing. Genotyping was performed for 32 polymorphisms in CLOCK, BMAL1, PER3, and TIMELESS genes using real-time PCR with TaqMan genotyping assays. Statistical calculations were performed in Statistica 12 and linkage disequilibrium was analysed using Haploview 4.2. Results: Three SNPs in TIMELESS (rs10876890, rs2291739, rs11171856), were significantly associated with asthma. Moreover, haplotype analysis showed that two TIMELESS haplotypes (TTTT and CTAC) were also associated with asthma risk, although after multiple testing correction only TTTT haplotype showed significant association with childhood asthma. Conclusions: We have shown for the first time that TIMELESS may be a novel candidate gene for childhood asthma and thus indicating that circadian oscillation in symptoms severity may be genetically predisposed.
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- 2018
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425. Decision letter: Spliceosome factors target timeless (tim) mRNA to control clock protein accumulation and circadian behavior in Drosophila
- Author
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John Ewer
- Subjects
Messenger RNA ,Spliceosome ,Timeless ,Circadian rhythm ,Biology ,Drosophila (subgenus) ,biology.organism_classification ,Cell biology - Published
- 2018
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426. Mutant huntingtin disturbs circadian clock gene expression and sleep patterns in Drosophila
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Nóra Zsindely, Anikó Faragó, and László Bodai
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0301 basic medicine ,Huntingtin ,Timeless ,lcsh:Medicine ,Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Circadian Clocks ,Gene expression ,Animals ,Drosophila Proteins ,Circadian rhythm ,lcsh:Science ,Gene ,Huntingtin Protein ,Multidisciplinary ,Molecular pathology ,lcsh:R ,Huntington's disease ,Gene regulation ,Disease Models, Animal ,030104 developmental biology ,Basic-Leucine Zipper Transcription Factors ,Huntington Disease ,Phenotype ,Gene Expression Regulation ,Circadian regulation ,Disturbed sleep pattern ,lcsh:Q ,Drosophila ,Entrainment (chronobiology) ,Sleep ,Transcriptome ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Deficiency of the sleep-wake cycle can accelerate the progression of Huntington’s disease (HD) and exacerbate symptoms making it a target of investigation to better understand the molecular pathology of the disorder. In this study we analyzed sleep defects in a Drosophila model of HD and investigated whether disturbed sleep coincides with alterations in the molecular mechanism controlling circadian rhythm. To analyze sleep defects we recorded the daily activity of flies in 12:12 hours light:dark entrainment and in regard to the underlying molecular mechanism measured circadian “clock” gene expression. In HD flies we observed reduced amount of sleep, sleep fragmentation and prolonged sleep latency. We found changes in gene expression patterns of both transcriptional feedback loops of circadian regulation. We detected prolonged expression of the core feedback loop components period and timeless, whilst the secondary feedback loop member vrille had lower expression rates in general. Our results show that the Drosophila HD model recapitulates most of the sleep related symptoms reported in patients therefore it can be a potential tool to study the molecular background of sleep defects in HD. Altered expression of circadian “clock” genes suggests that disturbed sleep pattern in HD might be the consequence of disturbed circadian regulation.
- Published
- 2018
427. An exploration into the appeal of the work of Frank Lloyd Wright through Christopher Alexander's A Pattern Language and The Timeless Way of Building
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Michael Laine Terlouw
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Wright ,History ,Work (electrical) ,Timeless ,Design pattern ,Appeal ,Art history ,Performance art ,Architecture ,Law and economics - Published
- 2018
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428. Clock gene expression and locomotor activity predict death in the last days of life in Drosophila melanogaster
- Author
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James F. Cheeseman, Guy R. Warman, and Jia Zhao
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0301 basic medicine ,Aging ,Timeless ,Photoperiod ,Period (gene) ,Longevity ,Circadian clock ,lcsh:Medicine ,CLOCK Proteins ,Physiology ,Biology ,Article ,Animals, Genetically Modified ,03 medical and health sciences ,Circadian Clocks ,Animals ,Drosophila Proteins ,Circadian rhythm ,lcsh:Science ,Regulation of gene expression ,Multidisciplinary ,lcsh:R ,Gene Expression Regulation, Developmental ,Period Circadian Proteins ,Survival Analysis ,Circadian Rhythm ,CLOCK ,Drosophila melanogaster ,030104 developmental biology ,lcsh:Q ,Locomotion - Abstract
The importance of the circadian clock for the regulation of behaviour and physiology, and the molecular control of these rhythms by a set of clock genes are well defined. The circadian clock deteriorates with advancing age but the mechanism underlying is unclear. Here we recorded the expression of two key clock genes in young, middle-aged and old Drosophila using transgenic luciferase lines reporting period and timeless in vivo. We report a novel marker of imminent death in the expression of TIMELESS. In the days immediately preceding death TIMELESS expression increased to at least 150% of previous acrophase values (88.0% of n = 217) and lost circadian rhythmicity, which predicted death equally well in flies of different ages and under light and temperature cycles. We suggest this transient aberrant clock-gene expression is central to the mechanism of the disturbance in circadian behaviour before death (82.7% of n = 342). We also find that PERIOD expression in central-clock neurons remained robust with age, however PERIOD and TIMELESS in peripheral clocks showed a reduction in both expression level and rhythmicity. In conclusion, as flies age the molecular clock gradually declines at the peripheral level but continues to function at the central until days before death.
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- 2018
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429. Loss of circadian protein TIMELESS accelerates the progression of cellular senescence
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Mingzhe Li, Wenhua Yu, Zebin Mao, and Xiaomeng Shen
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0301 basic medicine ,Genome instability ,Senescence ,Timeless ,Biophysics ,Cell Cycle Proteins ,Biology ,Biochemistry ,Genomic Instability ,Cell Line ,03 medical and health sciences ,Genes, Reporter ,E2F1 ,Humans ,Circadian rhythm ,RNA, Small Interfering ,Promoter Regions, Genetic ,Molecular Biology ,Gene ,Cellular Senescence ,Gene knockdown ,Intracellular Signaling Peptides and Proteins ,Cell Biology ,Hydrogen Peroxide ,Fibroblasts ,beta-Galactosidase ,Cell biology ,Circadian Rhythm ,030104 developmental biology ,HEK293 Cells ,Gene Expression Regulation ,ras Proteins ,Ectopic expression ,E2F1 Transcription Factor ,Protein Binding ,Signal Transduction - Abstract
TIMELESS protein is known to be essential for normal circadian rhythms. Aging is a deleterious process which affects all the physiological functions of complex organisms including the circadian rhythms. The circadian aging may produce disorganization among the circadian rhythms, arrhythmicity and even, disconnection from the environment, resulting in a detrimental situation to the organism. However, the role of circadian genes on the aging process is poorly understood. In present study, we found TIMELESS was down-regulated in cellular senescence, and further research indicated E2F1 bound to the promotor of TIMELESS and regulated its expression in cellular senescence. Knockdown of TIMELESS accelerated cellular senescence induced by ectopic expression of RasV12, and overexpression of TIMELESS delayed this kind onset of senescence. Meanwhile, micrococcal nuclease assays proved depletion of TIMELESS exacerbated genomic instability at the onset of senescence. Together, our data reveal that TIMELESS plays a role in OIS, which is associated with genome stability changing.
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- 2018
430. ERK-mediated TIMELESS expression suppresses G2/M arrest in colon cancer cells
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Jamie L. McCall, Beth K. Neilsen, Robert E. Lewis, Danielle E. Frodyma, and Kurt W. Fisher
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0301 basic medicine ,MAPK/ERK pathway ,Cell ,Cell Cycle Proteins ,Biochemistry ,Histones ,0302 clinical medicine ,Medicine and Health Sciences ,Small interfering RNAs ,Cell Cycle and Cell Division ,RNA, Small Interfering ,Post-Translational Modification ,Phosphorylation ,Multidisciplinary ,Intracellular Signaling Peptides and Proteins ,Nuclear Proteins ,Cell cycle ,Protein-Tyrosine Kinases ,G2 Phase Cell Cycle Checkpoints ,Gene Expression Regulation, Neoplastic ,Nucleic acids ,Wee1 ,Circadian Rhythms ,medicine.anatomical_structure ,Oncology ,Cell Processes ,030220 oncology & carcinogenesis ,Colonic Neoplasms ,Medicine ,Research Article ,Cell Physiology ,Timeless ,MAP Kinase Signaling System ,Science ,Biology ,03 medical and health sciences ,Cell Line, Tumor ,CDC2 Protein Kinase ,medicine ,Genetics ,Humans ,Non-coding RNA ,Cell Proliferation ,Colorectal Cancer ,Cyclin-dependent kinase 1 ,Cell growth ,Cancers and Neoplasms ,Biology and Life Sciences ,Proteins ,Cell Biology ,DNA ,HCT116 Cells ,Cell Metabolism ,Gene regulation ,030104 developmental biology ,Cancer cell ,Checkpoint Kinase 1 ,Cancer research ,biology.protein ,DNA damage ,RNA ,Gene expression ,Chronobiology - Abstract
The cell cycle is under circadian regulation. Oncogenes can dysregulate circadian-regulated genes to disrupt the cell cycle, promoting tumor cell proliferation. As a regulator of G2/M arrest in response to DNA damage, the circadian gene Timeless Circadian Clock (TIMELESS) coordinates this connection and is a potential locus for oncogenic manipulation. TIMELESS expression was evaluated using RNASeq data from TCGA and by RT-qPCR and western blot analysis in a panel of colon cancer cell lines. TIMELESS expression following ERK inhibition was examined via western blot. Cell metabolic capacity, propidium iodide, and CFSE staining were used to evaluate the effect of TIMELESS depletion on colon cancer cell survival and proliferation. Cell metabolic capacity following TIMELESS depletion in combination with Wee1 or CHK1 inhibition was assessed. TIMELESS is overexpressed in cancer and required for increased cancer cell proliferation. ERK activation promotes TIMELESS expression. TIMELESS depletion increases γH2AX, a marker of DNA damage, and triggers G2/M arrest via increased CHK1 and CDK1 phosphorylation. TIMELESS depletion in combination with Wee1 or CHK1 inhibition causes an additive decrease in cancer cell metabolic capacity with limited effects in non-transformed human colon epithelial cells. The data show that ERK activation contributes to the overexpression of TIMELESS in cancer. Depletion of TIMELESS increases γH2AX and causes G2/M arrest, limiting cell proliferation. These results demonstrate a role for TIMELESS in cancer and encourage further examination of the link between circadian rhythm dysregulation and cancer cell proliferation.
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- 2018
431. Neural Network Interactions Modulate CRY-Dependent Photoresponses in Drosophila
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Patrick Emery, Lauren E. Foley, and Pallavi Lamba
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0301 basic medicine ,Male ,Light ,Timeless ,Circadian clock ,Biology ,03 medical and health sciences ,Pigment dispersing factor ,Cryptochrome ,Circadian Clocks ,Phase response ,Animals ,Drosophila Proteins ,Circadian rhythm ,Eye Proteins ,Sensory cue ,Research Articles ,General Neuroscience ,Circadian Rhythm ,Cryptochromes ,030104 developmental biology ,Drosophila ,Photoreceptor Cells, Invertebrate ,Nerve Net ,Entrainment (chronobiology) ,Neuroscience ,Locomotion - Abstract
Light is one of the chief environmental cues that reset circadian clocks. In Drosophila, CRYPTOCHROME (CRY) mediates acute photic resetting of circadian clocks by promoting the degradation of TIMELESS in a cell-autonomous manner. Thus, even circadian oscillators in peripheral organs can independently perceive light in Drosophila However, there is substantial evidence for nonautonomous mechanisms of circadian photoreception in the brain. We have previously shown that the morning (M) and evening (E) oscillators are critical light-sensing neurons that cooperate to shift the phase of circadian behavior in response to light input. We show here that light can efficiently phase delay or phase advance circadian locomotor behavior in male Drosophila even when either the M- or the E-oscillators are ablated, suggesting that behavioral phase shifts and their directionality are largely a consequence of the cell-autonomous nature of CRY-dependent photoreception. Our observation that the phase response curves of brain and peripheral oscillators are remarkably similar further supports this idea. Nevertheless, the neural network modulates circadian photoresponses. We show that the M-oscillator neurotransmitter pigment dispersing factor plays a critical role in the coordination between M- and E-oscillators after light exposure, and we uncover a potential role for a subset of dorsal neurons in the control of phase advances. Thus, neural modulation of autonomous light detection might play an important role in the plasticity of circadian behavior.SIGNIFICANCE STATEMENT Input pathways provide circadian rhythms with the flexibility needed to harmonize their phase with environmental cycles. Light is the chief environmental cue that synchronizes circadian clocks. In Drosophila, the photoreceptor CRYPTOCHROME resets circadian clocks cell-autonomously. However, recent studies indicate that, in the brain, interactions between clock neurons are critical to reset circadian locomotor behavior. We present evidence supporting the idea that the ability of flies to advance or delay their rhythmic behavior in response to light input essentially results from cell-autonomous photoreception. However, because of their networked organization, we find that circadian neurons have to cooperate to reset the phase of circadian behavior in response to photic cues. Our work thus helps to reconcile cell-autonomous and non-cell-autonomous models of circadian entrainment.
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- 2018
432. Spliceosome factors target timeless (
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Iryna, Shakhmantsir, Soumyashant, Nayak, Gregory R, Grant, and Amita, Sehgal
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RNA Splicing ,timeless ,CLOCK Proteins ,Protein Serine-Threonine Kinases ,Research Communication ,splicing ,Circadian Clocks ,Animals ,Drosophila Proteins ,RNA, Messenger ,Feedback, Physiological ,D. melanogaster ,Sequence Analysis, RNA ,Nuclear Proteins ,molecular clock ,Genetics and Genomics ,Exons ,Period Circadian Proteins ,Ribonucleoproteins, Small Nuclear ,Introns ,Circadian Rhythm ,Drosophila melanogaster ,circadian rhythms ,Spliceosomes ,Drosophila ,feedback loop ,Signal Transduction - Abstract
Transcription-translation feedback loops that comprise eukaryotic circadian clocks rely upon temporal delays that separate the phase of active transcription of clock genes, such as Drosophila period (per) and timeless (tim), from negative feedback by the two proteins. However, our understanding of the mechanisms involved is incomplete. Through an RNA interference screen, we found that pre-mRNA processing 4 (PRP4) kinase, a component of the U4/U5.U6 triple small nuclear ribonucleoprotein (tri-snRNP) spliceosome, and other tri-snRNP components regulate cycling of the molecular clock as well as rest:activity rhythms. Unbiased RNA-Sequencing uncovered an alternatively spliced intron in tim whose increased retention upon prp4 downregulation leads to decreased TIM levels. We demonstrate that the splicing of tim is rhythmic with a phase that parallels delayed accumulation of the protein in a 24 hr cycle. We propose that alternative splicing constitutes an important clock mechanism for delaying the daily accumulation of clock proteins, and thereby negative feedback by them. Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter).
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- 2018
433. Sequences of Circadian Clock Proteins in the Nudibranch Molluscs Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea
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Adriano Senatore, M. Sabrina Pankey, James M. Newcomb, Winsor H. Watson, John Morris, Paul S. Katz, Anna E. Gruen, and Geoffrey M. Cook
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0106 biological sciences ,Tritonia (gastropod) ,food.ingredient ,animal structures ,Timeless ,Period (gene) ,Gastropoda ,01 natural sciences ,Article ,Hermissenda ,03 medical and health sciences ,0302 clinical medicine ,food ,Circadian Clocks ,Animals ,CLOCK Proteins ,Phylogeny ,Melibe leonina ,biology ,010604 marine biology & hydrobiology ,Melibe ,Proteins ,Sequence Analysis, DNA ,biology.organism_classification ,Evolutionary biology ,Hermissenda crassicornis ,General Agricultural and Biological Sciences ,030217 neurology & neurosurgery - Abstract
While much is known about the genes and proteins that make up the circadian clocks in vertebrates and several arthropod species, much less is known about the clock genes in many other invertebrates, including nudibranchs. The goal of this project was to identify the RNA and protein products of putative clock genes in the central nervous system of three nudibranchs, Hermissenda crassicornis, Melibe leonina, and Tritonia diomedea. Using previously published transcriptomes (Hermissenda and Tritonia) and a new transcriptome (Melibe), we identified nudibranch orthologs for the products of five canonical clock genes: brain and muscle aryl hydrocarbon receptor nuclear translocator like protein 1, circadian locomotor output cycles kaput, non-photoreceptive cryptochrome, period, and timeless. Additionally, orthologous sequences for the products of five related genes-aryl hydrocarbon receptor nuclear translocator like, photoreceptive cryptochrome, cryptochrome DASH, 6-4 photolyase, and timeout-were determined. Phylogenetic analyses confirmed that the nudibranch proteins were most closely related to known orthologs in related invertebrates, such as oysters and annelids. In general, the nudibranch clock proteins shared greater sequence similarity with Mus musculus orthologs than Drosophila melanogaster orthologs, which is consistent with the closer phylogenetic relationships recovered between lophotrochozoan and vertebrate orthologs. The suite of clock-related genes in nudibranchs includes both photoreceptive and non-photoreceptive cryptochromes, as well as timeout and possibly timeless. Therefore, the nudibranch clock may resemble the one exhibited in mammals, or possibly even in non-drosopholid insects and oysters. The latter would be evidence supporting this as the ancestral clock for bilaterians.
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- 2018
434. Chapter 2: Contemporary Ethics
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France Bucar and Igor Kovač
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Point (typography) ,Timeless ,Environmental ethics ,Sociology ,Contemporary ethics - Abstract
A title like this is a controversial starting point. It alludes to the belief that ethics are not timeless, that they do not exist independently of the particular circumstances of place and time, and, furthermore, that ethics are not innate in human beings, not part of their inalienable being, but rather that they emerge from external, and particularly, social pressures. In other words, the implication is that ethics do not emerge from the individual, but rather from the external environment.
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- 2018
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435. The Spirit World
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Jue Guo
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History ,Action (philosophy) ,Timeless ,Aesthetics ,Realm ,Social complexity ,China ,Mutually exclusive events ,Period (music) - Abstract
This chapter takes a source-centered approach to introduce the spirit world from the Neolithic period to Han times. Recognizing the nearly universal attributes of spirits as being immaterial, intangible, and invisible, as well as the practical demand of materializing the unseen, three analytical lenses – presencing, practicing, and discoursing – are devised and employed in the analysis of the modes of action that human actors take to interact and communicate with the agentive spirits. As a result, different types and layers of references to spirits – due to different levels of social complexity, the appearance and spread of writing as a transforming technology, and different ways of source preservation (received and excavated) – amalgamated in the sources are unfolded. However, sources of different genesis and nature are not mutually exclusive but necessarily inform one another in the realm of ideas and constitute one another in practice. Therefore, while the spirit world may have been a timeless and stable aspect of early China, the concerns and techniques of those who acted upon and wrote about spirits shifted along with changes in the culture and institutions in early China.
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- 2018
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436. Drosophila RSK Influences the Pace of the Circadian Clock by Negative Regulation of Protein Kinase Shaggy Activity
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Thomas Raabe, Pamela Menegazzi, Anna Hovhanyan, Katherina Beck, and Charlotte Helfrich-Förster
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0301 basic medicine ,Timeless ,Shaggy kinase ,Circadian clock ,Biology ,Coffin–Lowry syndrome ,lcsh:RC321-571 ,Ribosomal s6 kinase ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,circadian clock ,CLOCK Proteins ,ddc:610 ,Kinase activity ,Protein kinase A ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Molecular Biology ,Original Research ,RSK ,Associative learning ,Cell biology ,030104 developmental biology ,Protein kinase domain ,Period ,biology.protein ,Drosophila ,Neuroscience - Abstract
Endogenous molecular circadian clocks drive daily rhythmic changes at the cellular, physiological, and behavioral level for adaptation to and anticipation of environmental signals. The core molecular system consists of autoregulatory feedback loops, where clock proteins inhibit their own transcription. A complex and not fully understood interplay of regulatory proteins influences activity, localization and stability of clock proteins to set the pace of the clock. This study focuses on the molecular function of Ribosomal S6 Kinase (RSK) in the Drosophila melanogaster circadian clock. Mutations in the human rsk2 gene cause Coffin-Lowry Syndrome, which is associated with severe mental disabilities. Knock-out studies with Drosophila orthologue rsk uncovered functions in synaptic processes, axonal transport and adult behavior including associative learning and circadian activity. However, the molecular targets of RSK remain elusive. Our experiments provide evidence that RSK acts in the key pace maker neurons as a negative regulator of Shaggy (SGG) kinase activity, which in turn determines timely nuclear entry of the clock proteins Period and Timeless to close the negative feedback loop. Phosphorylation of serine 9 in SGG is mediated by the C-terminal kinase domain of RSK, which is in agreement with previous genetic studies of RSK in the circadian clock but argues against the prevailing view that only the N-terminal kinase domain of RSK proteins carries the effector function. Our data provide a mechanistic explanation how RSK influences the molecular clock and imply SGG S9 phosphorylation by RSK and other kinases as a convergence point for diverse cellular and external stimuli.
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- 2018
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437. MP69-17 SURGICAL MANAGEMENT OF UPPER POLE NONFUNCTIONING RENAL MOIETIES – THE TIMELESS DEBATE
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Jeffrey T. White, Kunj R. Sheth, and Abhishek Seth
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medicine.medical_specialty ,business.industry ,Timeless ,Urology ,General surgery ,Medicine ,business - Published
- 2018
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438. CK1/Doubletime activity delays transcription activation in the circadian clock
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Gregory E. Merz, Michael W. Young, Kritika Dusad, Brian R. Crane, Jenna L O'Neil, and Deniz Top
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Transcriptional Activation ,0301 basic medicine ,Doubletime ,Casein Kinase 1 epsilon ,Timeless ,QH301-705.5 ,Period (gene) ,Science ,Circadian clock ,Protein degradation ,Biology ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Biochemistry and Chemical Biology ,Circadian Clocks ,Animals ,Drosophila Proteins ,Circadian rhythm ,Biology (General) ,Feedback, Physiological ,D. melanogaster ,General Immunology and Microbiology ,phosphorylation ,General Neuroscience ,Period Circadian Proteins ,General Medicine ,Cell biology ,030104 developmental biology ,Gene Expression Regulation ,circadian rhythms ,protein degradation ,Phosphorylation ,Medicine ,Drosophila ,Casein kinase 1 ,transcription regulation ,Research Article ,Neuroscience - Abstract
In the Drosophila circadian clock, Period (PER) and Timeless (TIM) proteins inhibit Clock-mediated transcription of per and tim genes until PER is degraded by Doubletime/CK1 (DBT)-mediated phosphorylation, establishing a negative feedback loop. Multiple regulatory delays within this feedback loop ensure ~24 hr periodicity. Of these delays, the mechanisms that regulate delayed PER degradation (and Clock reactivation) remain unclear. Here we show that phosphorylation of certain DBT target sites within a central region of PER affect PER inhibition of Clock and the stability of the PER/TIM complex. Our results indicate that phosphorylation of PER residue S589 stabilizes and activates PER inhibitory function in the presence of TIM, but promotes PER degradation in its absence. The role of DBT in regulating PER activity, stabilization and degradation ensures that these events are chronologically and biochemically linked, and contributes to the timing of an essential delay that influences the period of the circadian clock., eLife digest Many behaviors, such as when we fall asleep or wake up, follow the rhythm of day and night. This is regulated in part by our ‘circadian clock’, which controls biological processes through the timed activation of hundreds of genes over the 24-hour day. In fruit flies, the proteins that form the core of the circadian clock activate and repress each other in such a way that their expression oscillates over a 24-hour cycle. During the late afternoon and early evening, the Clock protein initiates the production of proteins Period and Timeless: these two molecules then accumulate in the cell, and after binding to each other, they are transported into the nucleus. During the late night and early morning, this Period/Timeless complex inhibits the activity of Clock. After a delay, Period and Timeless are degraded. This allows Clock to be reactivated, restarting the cycle for the next day. Period is critical to help maintain the 24-hour oscillation shown by these proteins. A protein called Doubletime is responsible for making a number of chemical modifications on Period. It is unclear how these changes interact with each other, and how they influence the stability and function of Period when it is associated with Timeless. Here, Top et al. generate mutations in the fruit fly gene period to study these processes, and develop a new biomolecular technique to monitor the stability and activity of Period protein in insect cells grown in the laboratory. The experiments reveal new roles for the chemical changes made by Doubletime to Period. First, after Period associates with Timeless, Doubletime triggers certain modifications that lead to Period being able to inactivate Clock. Second, Doubletime makes another change in a nearby region of Period that results in the Period/Timeless complex being stabilized. Both sets of modifications help the complex to stay active and keep inhibiting Clock for long enough such that a 24-hour rhythm can be maintained. Finally, when Timeless is degraded, Period is released from the complex. At this time, the modifications made by Doubletime promote the degradation of Period, resetting the clock. Fruit flies with mutations that block this mechanism perceive the day as shorter. This shows that the smallest change to clock genes can disorganize behavior. Indeed in humans, health problems such as sleep or mental health disorders are associated with irregular circadian clocks. Understanding the biochemical mechanisms that keep the body clocks ticking could help to find new therapeutic targets for these conditions.
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- 2018
439. Photosensitive Alternative Splicing of the Circadian Clock Gene timeless Is Population Specific in a Cold-Adapted Fly, Drosophila montana
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Tapanainen, Riikka, Parker, Darren J., and Kankare, Maaria
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Light ,mahlakärpäset ,timeless ,Genes, Insect ,Investigations ,photoperiod ,alternative splicing ,Drosophila montana ,Circadian Clocks ,3' Untranslated Regions/genetics ,Adaptation, Physiological/genetics ,Alternative Splicing/genetics ,Analysis of Variance ,Animals ,Base Sequence ,Circadian Clocks/genetics ,Cold Temperature ,Drosophila/genetics ,Drosophila/physiology ,Drosophila Proteins/genetics ,Drosophila Proteins/metabolism ,Female ,Geography ,Introns/genetics ,Mutation/genetics ,Alternative splicing ,light-dark cycle ,temperature ,Drosophila Proteins ,3' Untranslated Regions ,vuorokausirytmi ,sopeutuminen ,geenit ,fungi ,Adaptation, Physiological ,Introns ,Alternative Splicing ,populaatiogenetiikka ,Mutation ,Drosophila ,lämpötila ,Drosophila Montana - Abstract
To function properly, organisms must adjust their physiology, behavior and metabolism in response to a suite of varying environmental conditions. One of the central regulators of these changes is organisms' internal circadian clock, and recent evidence has suggested that the clock genes are also important in the regulation of seasonal adjustments. In particular, thermosensitive splicing of the core clock gene timeless in a cosmopolitan fly, Drosophila melanogaster , has implicated this gene to be involved in thermal adaptation. To further investigate this link we examined the splicing of timeless in a northern malt fly species, Drosophila montana , which can withstand much colder climatic conditions than its southern relative. We studied northern and southern populations from two different continents (North America and Europe) to find out whether and how the splicing of this gene varies in response to different temperatures and day lengths. Interestingly, we found that the expression of timeless splice variants was sensitive to differences in light conditions, and while the flies of all study populations showed a change in the usage of splice variants in constant light compared to LD 22:2, the direction of the shift varied between populations. Overall, our findings suggest that the splicing of timeless in northern Drosophila montana flies is photosensitive, rather than thermosensitive and highlights the value of studying multiple species and populations in order to gain perspective on the generality of gene function changes in different kinds of environmental conditions.
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- 2018
440. Romantic perversion: the role of envy in the creation of a timeless universe
- Author
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Heinz Weiß
- Subjects
Perversion ,Psychoanalysis ,Timeless ,media_common.quotation_subject ,Philosophy ,Romance ,Universe ,media_common - Published
- 2018
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441. Causation in a timeless world?
- Author
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Jonathan Tallant
- Subjects
biology ,Timeless ,Health Policy ,Philosophy ,timeless worlds ,05 social sciences ,Appeal ,Miller ,06 humanities and the arts ,0603 philosophy, ethics and religion ,biology.organism_classification ,050105 experimental psychology ,Epistemology ,causation ,Argument ,Salient ,Section (archaeology) ,060302 philosophy ,0501 psychology and cognitive sciences ,Causation ,Order (virtue) - Abstract
This paper is an attempt to answer the question, 'could there be causation in a timeless world?' My conclusion: tentatively, yes. The paper and argument have three parts. Part one introduces salient issues and spells out the importance of this (initially somewhat baroque seeming) line of investigation. Section two of the paper reviews recent arguments due to Baron and Miller (2015a), who argue in favor of the possibility of causation in a timeless world, and looks to reject their arguments developed there. Section three is a response to a response. In their (2015a), Baron and Miller also argue that an argument in favor of the possibility of causation at timeless worlds, that I put forward (Tallant, 2008), is an argument that fails. In section three, my response to Baron and Miller is that their argument against me succeeds, but that there is a nearby argument that we can appeal to in order to demonstrate the possibility of causation at timeless worlds.
- Published
- 2018
442. The timeless appeal of Hannah Arendt
- Author
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Vittorio Bufacchi
- Subjects
Timeless ,Aesthetics ,Political science ,Political Science and International Relations ,Appeal ,Comparative politics ,Political philosophy - Published
- 2019
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443. Identification of TIMELESS and RORA as key clock molecules of non-small cell lung cancer and the comprehensive analysis.
- Author
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Xian H, Li Y, Zou B, Chen Y, Yin H, Li X, and Pan Y
- Subjects
- Biomarkers, Tumor genetics, Carcinoma, Non-Small-Cell Lung mortality, Circadian Rhythm genetics, Gene Expression Regulation, Neoplastic genetics, Humans, Kaplan-Meier Estimate, Lung Neoplasms mortality, Mutation, Prognosis, Proportional Hazards Models, Carcinoma, Non-Small-Cell Lung genetics, Cell Cycle Proteins genetics, Circadian Clocks genetics, Intracellular Signaling Peptides and Proteins genetics, Lung Neoplasms genetics, Nuclear Receptor Subfamily 1, Group F, Member 1 genetics
- Abstract
Background: The incidence rate of non-small cell lung cancer (NSCLC) has been increasing worldwide, and the correlation of circadian rhythm disruption with a raised risk of cancer and worse prognosis has been shown by accumulating evidences recently. On the other hand, drug resistance and the impact of tumor heterogeneity have been inevitable in NSCLC therapy. These both lead to an urgent need to identify more useful prognostic and predictive markers for NSCLC diagnosis and treatment, especially on the aspect of circadian clock genes., Methods: The expression of the main clock genes in cancer was probed with TIMER and Oncomine databases. The prognostic value of key clock genes was probed systematically with the Kaplan-Meier estimate and Cox regression on samples from TCGA database. RT-qPCR was performed on patient tissue samples to further validate the results from databases. The functional enrichment analysis was performed using the "ClusterProfiler" R package, and the correlation of key clock genes with tumor mutation burden, immune checkpoint, and immune infiltration levels were also assessed using multiple algorithms including TIDE, TIMER2.0, and XCELL., Results: TIMELESS was significantly upregulated in lung tissue of clinical lung cancer patients as well as TCGA and Oncomine databases, while RORA was downregulated. Multivariate Cox regression analysis indicated that TIMELESS (P = 0.004, HR = 1.21 [1.06, 1.38]) and RORA (P = 0.047, HR = 0.868 [0.755, 0.998]) has a significant correlation with overall survival in NSCLC. Genes related to TIMELESS were enriched in the cell cycle and immune system, and the function of RORA was mainly focused on oncogenic signaling pathways or glycosylation and protein activation. Also, TIMELESS was positively correlated with tumor mutation burden while RORA was negatively correlated with it. TIMELESS and RORA were also significantly correlated with immune checkpoint and immune infiltration levels in NSCLC. Additionally, TIMELESS showed a significant positive relationship with lipid metabolism., Conclusions: TIMELESS and RORA were identified as key clock genes in NSCLC, and were independent prognostic factors for overall survival in NSCLC. The function of them were assessed in many aspects, indicating the strong potential of the two genes to serve as biomarkers for NSCLC progression and prognosis., (© 2022. The Author(s).)
- Published
- 2022
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444. Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock.
- Author
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Kotwica-Rolinska J, Chodáková L, Smýkal V, Damulewicz M, Provazník J, Wu BC, Hejníková M, Chvalová D, and Doležel D
- Subjects
- Animals, Circadian Rhythm genetics, Cryptochromes genetics, Drosophila melanogaster genetics, Mammals metabolism, Mice, Circadian Clocks genetics, Drosophila Proteins genetics, Drosophila Proteins metabolism
- Abstract
Most organisms possess time-keeping devices called circadian clocks. At the molecular level, circadian clocks consist of transcription-translation feedback loops (TTFLs). Although some components of the negative TTFL are conserved across the animals, important differences exist between typical models, such as mouse and the fruit fly. In Drosophila, the key components are PERIOD (PER) and TIMELESS (TIM-d) proteins, whereas the mammalian clock relies on PER and CRYPTOCHROME (CRY-m). Importantly, how the clock has maintained functionality during evolutionary transitions between different states remains elusive. Therefore, we systematically described the circadian clock gene setup in major bilaterian lineages and identified marked lineage-specific differences in their clock constitution. Then we performed a thorough functional analysis of the linden bug Pyrrhocoris apterus, an insect species comprising features characteristic of both the Drosophila and the mammalian clocks. Unexpectedly, the knockout of timeless-d, a gene essential for the clock ticking in Drosophila, did not compromise rhythmicity in P. apterus, it only accelerated its pace. Furthermore, silencing timeless-m, the ancestral timeless type ubiquitously present across animals, resulted in a mild gradual loss of rhythmicity, supporting its possible participation in the linden bug clock, which is consistent with timeless-m role suggested by research on mammalian models. The dispensability of timeless-d in P. apterus allows drawing a scenario in which the clock has remained functional at each step of transition from an ancestral state to the TIM-d-independent PER + CRY-m system operating in extant vertebrates, including humans., (© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2022
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445. The Fork Protection Complex: A Regulatory Hub at the Head of the Replisome.
- Author
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Grabarczyk DB
- Subjects
- Cell Cycle Proteins genetics, Cell Cycle Proteins metabolism, Humans, DNA Replication, DNA-Binding Proteins metabolism
- Abstract
As well as accurately duplicating DNA, the eukaryotic replisome performs a variety of other crucial tasks to maintain genomic stability. For example, organizational elements, like cohesin, must be transferred from the front of the fork to the new strands, and when there is replication stress, forks need to be protected and checkpoint signalling activated. The Tof1-Csm3 (or Timeless-Tipin in humans) Fork Protection Complex (FPC) ensures efficient replisome progression and is required for a range of replication-associated activities. Recent studies have begun to reveal the structure of this complex, and how it functions within the replisome to perform its diverse roles. The core of the FPC acts as a DNA grip on the front of the replisome to regulate fork progression. Other flexibly linked domains and motifs mediate interactions with proteins and specific DNA structures, enabling the FPC to act as a hub at the head of the replication fork., (© 2022. The Author(s), under exclusive license to Springer Nature Switzerland AG.)
- Published
- 2022
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446. Reading Analytic Philosophy in its Time and Place
- Author
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Naomi Choi
- Subjects
Literature ,History ,Sociology and Political Science ,Logical analysis ,business.industry ,Timeless ,Philosophy ,media_common.quotation_subject ,Epistemology ,Analytic philosophy ,Ask price ,Reading (process) ,business ,media_common - Abstract
Once upon a time, there were seemingly no interesting questions to ask about the contextual history of the rise of analysis. The pursuit of timeless truths through logical analysis rendered the his...
- Published
- 2016
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447. Peter Der Manuelian, ed. 30-Second Ancient Egypt: The 50 Most Important Achievements of a Timeless Civilization, Each Explained in Half a Minute (East Sussex: Ivy Press, 2014, 160pp., 63 colour illustr., 1 map, hbk, ISBN 978-1-78240-132-2) - Matthew Nicholls, ed. 30-Second Ancient Rome: The 50 Most Important Achievements of a Timeless Civilization, Each Explained in Half a Minute (East Sussex: Ivy Press, 2014, 160pp., 63 b/w and colour illustr., 1 map, hbk, ISBN 978-1-78240-131-5) - Karen Radner. Ancient Assyria: A Very Short Introduction (Oxford: Oxford University Press, 2015, 146pp., 12 b/w illustr., 2 maps, pbk, ISBN 978-0-19-871590-0) - Peter Salway. Roman Britain: A Very Short Introduction, fully updated 2nd ed. (Oxford: Oxford University Press, 2015, 130pp., 11 b/w illustr., 8 maps, pbk, ISBN 978-0-19-871216-9) - Peter Sarris. Byzantium: A Very Short Introduction (Oxford: Oxford University Press, 2015, 154pp., 10 b/w illustr., 5 maps, pbk, ISBN 978-0-19-923611-4)
- Author
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N. James
- Subjects
Archeology ,Ancient egypt ,Civilization ,History ,Timeless ,media_common.quotation_subject ,Assyria ,Ideology ,Ancient history ,Classics ,Byzantine architecture ,Ancient Rome ,media_common - Abstract
Dynastic Egypt, the Assyrians, Rome and the Romans’ Byzantine successors created and developed institutions and ideologies for managing large populations. Together, for that reason, they comprise m...
- Published
- 2016
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448. Can a Timeless God Act in the World?
- Author
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Dean Lubin
- Subjects
Literature ,Omnipotence ,Need to know ,business.industry ,Timeless ,Philosophy ,Omniscience ,Happening ,business ,Epistemology - Abstract
Can a timeless God act in the world? The purpose of this paper is to address this question by exploring the nature of timeless God’s omniscience. In the first part I argue—having explored what it means to say that God is timeless—that we should think of a timeless God’s omniscience factually rather than propositionally i.e. that a timeless God doesn’t know all propositions, but does know all facts. One consequence of this view is that though everything (what we call past, present and future) is equally present in the mind of a timeless God, being timeless he doesn’t know which events are past, which are present and which are future. For example, he doesn’t know that what is presently happening in the world is presently happening. The central issue I then consider in the second part is whether his knowledge could really be of the right kind for him to act in the temporal world. I argue that though God has knowledge of all the events in the temporal world and even knows (perhaps) their temporal orderings, he is unable to intervene because to do so he would need to have the knowledge he lacks; namely, he would need to know which events in the temporal world are past, which are present and which are future.
- Published
- 2016
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449. Peripheral Circadian Clocks Mediate Dietary Restriction-Dependent Changes in Lifespan and Fat Metabolism in Drosophila
- Author
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Jadwiga M. Giebultowicz, David Hall, Amita Sehgal, Christopher S. Nelson, Pankaj Kapahi, Sonnet S. Davis, Xiangzhong Zheng, Timothy Camarella, Subhash D. Katewa, Arvind Ramanathan, Rachel B. Brem, Neelanjan Bose, Kuntol Rakshit, and Kazutaka Akagi
- Subjects
Male ,0301 basic medicine ,medicine.medical_specialty ,Physiology ,Timeless ,Period (gene) ,Longevity ,Circadian clock ,CLOCK Proteins ,Gene Expression ,Endogeny ,Biology ,Article ,03 medical and health sciences ,Circadian Clocks ,Internal medicine ,medicine ,Animals ,Drosophila Proteins ,Circadian rhythm ,Molecular Biology ,Caloric Restriction ,Nuclear Proteins ,Lipid metabolism ,Period Circadian Proteins ,Cell Biology ,Lipid Metabolism ,Circadian Rhythm ,Cell biology ,CLOCK ,Drosophila melanogaster ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,Female ,Drosophila ,Signal Transduction - Abstract
Endogenous circadian clocks orchestrate several metabolic and signaling pathways that are known to modulate lifespan, suggesting clocks as potential targets for manipulation of metabolism and lifespan. We report here that the core circadian clock genes, timeless (tim) and period (per), are required for the metabolic and lifespan responses to DR in Drosophila. Consistent with the involvement of a circadian mechanism, DR enhances the amplitude of cycling of most circadian clock genes, including tim, in peripheral tissues. Mass-spectrometry-based lipidomic analysis suggests a role of tim in cycling of specific medium chain triglycerides under DR. Furthermore, overexpression of tim in peripheral tissues improves its oscillatory amplitude and extends lifespan under ad libitum conditions. Importantly, effects of tim on lifespan appear to be mediated through enhanced fat turnover. These findings identify a critical role for specific clock genes in modulating the effects of nutrient manipulation on fat metabolism and aging.
- Published
- 2016
- Full Text
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450. Vanquishing Temporal Distance: Malraux, Art and Metamorphosis
- Author
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Derek Allan
- Subjects
Cultural Studies ,Linguistics and Language ,History ,Literature and Literary Theory ,Embeddedness ,Timeless ,media_common.quotation_subject ,Philosophy ,The Renaissance ,Enlightenment ,Art history ,Hegelianism ,Language and Linguistics ,Contemporary art ,Power (social and political) ,Temporal distance ,media_common - Abstract
How does art transcend time? What special power enables it to overcome temporal distance and speak to us not just as evidence of times gone by but as a living presence? The Renaissance concluded that great art is impervious to time – “timeless”, “immortal”, “eternal” – a belief endorsed by Enlightenment aesthetics. Later thinkers such as Hegel, Marx and Taine stressed the historical embeddedness of art, a view also espoused by certain modern theorists such as Sartre, Benjamin and Adorno. The conflict between these two positions has left us without a persuasive account of art’s capacity to transcend time. Andre Malraux offers an entirely new account of this unique power of art. For Malraux, art is neither exempt from history (timeless) nor wholly immersed in it. Art transcends time through metamorphosis, a process of continual transformation in significance in which history plays an essential, but not exclusive, part.
- Published
- 2016
- Full Text
- View/download PDF
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