224 results on '"Boronat, Albert"'
Search Results
202. Distinct triterpene synthases in the laticifers of Euphorbia lathyris.
- Author
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Forestier, Edith, Romero-Segura, Carmen, Pateraki, Irini, Centeno, Emilio, Compagnon, Vincent, Preiss, Myriam, Berna, Anne, Boronat, Albert, Bach, Thomas J., Darnet, Sylvain, and Schaller, Hubert
- Abstract
Euphorbia lathyris was proposed about fifty years ago as a potential agroenergetic crop. The tremendous amounts of triterpenes present in its latex has driven investigations for transforming this particular biological fluid into an industrial hydrocarbon source. The huge accumulation of terpenes in the latex of many plant species represent a challenging question regarding cellular homeostasis. In fact, the enzymes, the mechanisms and the controllers that tune the amount of products accumulated in specialized compartments (to fulfill ecological roles) or deposited at important sites (as essential factors) are not known. Here, we have isolated oxidosqualene cyclases highly expressed in the latex of Euphorbia lathyris. This triterpene biosynthetic machinery is made of distinct paralogous enzymes responsible for the massive accumulation of steroidal and non-steroidal tetracyclic triterpenes. More than eighty years after the isolation of butyrospermol from shea butter (Heilbronn IM, Moffet GL, and Spring FS J. Chem. Soc. 1934, 1583), a butyrospermol synthase is characterized in this work using yeast and in folia heterologous expression assays. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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203. Structural and functional analysis of tomato sterol C22 desaturase.
- Author
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Gutiérrez-García L, Arró M, Altabella T, Ferrer A, and Boronat A
- Subjects
- Amino Acid Motifs, Endoplasmic Reticulum enzymology, Models, Molecular, Phytosterols metabolism, Protein Domains, Stigmasterol metabolism, Structure-Activity Relationship, Cytochrome P-450 Enzyme System chemistry, Cytochrome P-450 Enzyme System metabolism, Solanum lycopersicum enzymology, Plant Proteins chemistry, Plant Proteins metabolism
- Abstract
Background: Sterols are structural and functional components of eukaryotic cell membranes. Plants produce a complex mixture of sterols, among which β-sitosterol, stigmasterol, campesterol, and cholesterol in some Solanaceae, are the most abundant species. Many reports have shown that the stigmasterol to β-sitosterol ratio changes during plant development and in response to stresses, suggesting that it may play a role in the regulation of these processes. In tomato (Solanum lycopersicum), changes in the stigmasterol to β-sitosterol ratio correlate with the induction of the only gene encoding sterol C22-desaturase (C22DES), the enzyme specifically involved in the conversion of β-sitosterol to stigmasterol. However, despite the biological interest of this enzyme, there is still a lack of knowledge about several relevant aspects related to its structure and function., Results: In this study we report the subcellular localization of tomato C22DES in the endoplasmic reticulum (ER) based on confocal fluorescence microscopy and cell fractionation analyses. Modeling studies have also revealed that C22DES consists of two well-differentiated domains: a single N-terminal transmembrane-helix domain (TMH) anchored in the ER-membrane and a globular (or catalytic) domain that is oriented towards the cytosol. Although TMH is sufficient for the targeting and retention of the enzyme in the ER, the globular domain may also interact and be retained in the ER in the absence of the N-terminal transmembrane domain. The observation that a truncated version of C22DES lacking the TMH is enzymatically inactive revealed that the N-terminal membrane domain is essential for enzyme activity. The in silico analysis of the TMH region of plant C22DES revealed several structural features that could be involved in substrate recognition and binding., Conclusions: Overall, this study contributes to expand the current knowledge on the structure and function of plant C22DES and to unveil novel aspects related to plant sterol metabolism.
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- 2021
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204. Fractionation of Tomato Fruit Chromoplasts.
- Author
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De Pourcq K and Boronat A
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- Centrifugation, Density Gradient, Chemical Fractionation, Fruit chemistry, Solanum lycopersicum chemistry, Plastids
- Abstract
Chromoplast differentiation involves an active synthesis of carotenoids associated with the remodeling of the preexisting plastid membrane systems to form specialized structures involved in the sequestration and storage of the synthesized carotenoids. These subplastidial structures show remarkable morphological differences and seem to be adapted to the accumulation of particular carotenoids in some plant species and organs. At present, very little is known about chromoplast biogenesis and the role of the different suborganellar structures in the synthesis and storage of carotenoids. The combination of classical fractionation methods with the use of biochemical and -omics techniques represents an attractive approach to unravel novel aspects related with the biochemical and cellular mechanisms underlying the biogenesis of the structures involved in the biosynthesis and storage of carotenoids during chromoplast differentiation. Here we describe a combined protocol for the isolation, lysis and fractionation of tomato fruit chromoplast. The fractions obtained are suitable for metabolomics and proteomics analysis.
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- 2020
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205. Inactivation of UDP-Glucose Sterol Glucosyltransferases Enhances Arabidopsis Resistance to Botrytis cinerea .
- Author
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Castillo N, Pastor V, Chávez Á, Arró M, Boronat A, Flors V, Ferrer A, and Altabella T
- Abstract
Free and glycosylated sterols are both structural components of the plasma membrane that regulate their biophysical properties and consequently different plasma membrane-associated processes such as plant adaptation to stress or signaling. Several reports relate changes in glycosylated sterols levels with the plant response to abiotic stress, but the information about the role of these compounds in the response to biotic stress is scarce. In this work, we have studied the response to the necrotrophic fungus Botrytis cinerea in an Arabidopsis mutant that is severely impaired in steryl glycosides biosynthesis due to the inactivation of the two sterol glucosyltransferases (UGT80A2 and UGT80B1) reported in this plant. This mutant exhibits enhanced resistance against B. cinerea when compared to wild-type plants, which correlates with increased levels of jasmonic acid (JA) and up-regulation of two marker genes ( PDF1.2 and PR4 ) of the ERF branch of the JA signaling pathway. Upon B. cinerea infection, the ugt80A2;B1 double mutant also accumulates higher levels of camalexin, the major Arabidopsis phytoalexin, than wild-type plants. Camalexin accumulation correlates with enhanced transcript levels of several cytochrome P450 camalexin biosynthetic genes, as well as of their transcriptional regulators WRKY33 , ANAC042 , and MYB51 , suggesting that the Botrytis -induced accumulation of camalexin is coordinately regulated at the transcriptional level. After fungus infection, the expression of genes involved in the indole glucosinolate biosynthesis is also up-regulated at a higher degree in the ugt80A2;B1 mutant than in wild-type plants. Altogether, the results of this study show that glycosylated sterols play an important role in the regulation of Arabidopsis response to B. cinerea infection and suggest that this occurs through signaling pathways involving the canonical stress-hormone JA and the tryptophan-derived secondary metabolites camalexin and possibly also indole glucosinolates., (Copyright © 2019 Castillo, Pastor, Chávez, Arró, Boronat, Flors, Ferrer and Altabella.)
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- 2019
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206. Identification and Characterization of Sterol Acyltransferases Responsible for Steryl Ester Biosynthesis in Tomato.
- Author
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Lara JA, Burciaga-Monge A, Chávez A, Revés M, Lavilla R, Arró M, Boronat A, Altabella T, and Ferrer A
- Abstract
Steryl esters (SEs) serve as a storage pool of sterols that helps to maintain proper levels of free sterols (FSs) in cell membranes throughout plant growth and development, and participates in the recycling of FSs and fatty acids released from cell membranes in aging tissues. SEs are synthesized by sterol acyltransferases, a family of enzymes that catalyze the transfer of fatty acil groups to the hydroxyl group at C-3 position of the sterol backbone. Sterol acyltransferases are categorized into acyl-CoA:sterol acyltransferases (ASAT) and phospholipid:sterol acyltransferases (PSAT) depending on whether the fatty acyl donor substrate is a long-chain acyl-CoA or a phospolipid. Until now, only Arabidopsis ASAT and PSAT enzymes (AtASAT1 and AtPSAT1) have been cloned and characterized in plants. Here we report the identification, cloning, and functional characterization of the tomato ( Solanum lycopersicum cv. Micro-Tom) orthologs. SlPSAT1 and SlASAT1 were able to restore SE to wild type levels in the Arabidopsis psat1-2 and asat1-1 knock-out mutants, respectively. Expression of SlPSAT1 in the psat1-2 background also prevented the toxicity caused by an external supply of mevalonate and the early senescence phenotype observed in detached leaves of this mutant, whereas expression of SlASAT1 in the asat1-1 mutant revealed a clear substrate preference of the tomato enzyme for the sterol precursors cycloartenol and 24-methylene cycloartanol. Subcellular localization studies using fluorescently tagged SlPSAT1 and SlASAT1 proteins revealed that SlPSAT1 localize in cytoplasmic lipid droplets (LDs) while, in contrast to the endoplasmic reticulum (ER) localization of AtASAT1, SlASAT1 resides in the plasma membrane (PM). The possibility that PM-localized SlASAT1 may act catalytically in trans on their sterol substrates, which are presumably embedded in the ER membrane, is discussed. The widespread expression of SlPSAT1 and SlASAT1 genes in different tomato organs together with their moderate transcriptional response to several stresses suggests a dual role of SlPSAT1 and SlASAT1 in tomato plant and fruit development and the adaptive responses to stress. Overall, this study contributes to enlarge the current knowledge on plant sterol acyltransferases and set the basis for further studies aimed at understanding the role of SE metabolism in tomato plant growth and development.
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- 2018
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207. A global perspective on carotenoids: Metabolism, biotechnology, and benefits for nutrition and health.
- Author
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Rodriguez-Concepcion M, Avalos J, Bonet ML, Boronat A, Gomez-Gomez L, Hornero-Mendez D, Limon MC, Meléndez-Martínez AJ, Olmedilla-Alonso B, Palou A, Ribot J, Rodrigo MJ, Zacarias L, and Zhu C
- Subjects
- Animals, Crops, Agricultural, Humans, Biotechnology, Carotenoids metabolism, Health, Nutritional Sciences
- Abstract
Carotenoids are lipophilic isoprenoid compounds synthesized by all photosynthetic organisms and some non-photosynthetic prokaryotes and fungi. With some notable exceptions, animals (including humans) do not produce carotenoids de novo but take them in their diets. In photosynthetic systems carotenoids are essential for photoprotection against excess light and contribute to light harvesting, but perhaps they are best known for their properties as natural pigments in the yellow to red range. Carotenoids can be associated to fatty acids, sugars, proteins, or other compounds that can change their physical and chemical properties and influence their biological roles. Furthermore, oxidative cleavage of carotenoids produces smaller molecules such as apocarotenoids, some of which are important pigments and volatile (aroma) compounds. Enzymatic breakage of carotenoids can also produce biologically active molecules in both plants (hormones, retrograde signals) and animals (retinoids). Both carotenoids and their enzymatic cleavage products are associated with other processes positively impacting human health. Carotenoids are widely used in the industry as food ingredients, feed additives, and supplements. This review, contributed by scientists of complementary disciplines related to carotenoid research, covers recent advances and provides a perspective on future directions on the subjects of carotenoid metabolism, biotechnology, and nutritional and health benefits., (Copyright © 2018 Elsevier Ltd. All rights reserved.)
- Published
- 2018
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208. Emerging roles for conjugated sterols in plants.
- Author
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Ferrer A, Altabella T, Arró M, and Boronat A
- Subjects
- Glycosylation, Hydrolysis, Phytosterols chemistry, Stress, Physiological, Phytosterols metabolism, Plants metabolism
- Abstract
In plants, sterols are found in free form (free sterols, FSs) and conjugated as steryl esters (SEs), steryl glycosides (SGs) and acyl steryl glycosides (ASGs). Conjugated sterols are ubiquitously found in plants but their relative contents highly differ among species and their profile may change in response to developmental and environmental cues. SEs play a central role in membrane sterol homeostasis and also represent a storage pool of sterols in particular plant tissues. SGs and ASGs are main components of the plant plasma membrane (PM) that specifically accumulate in lipid rafts, PM microdomains known to mediate many relevant cellular processes. There are increasing evidences supporting the involvement of conjugated sterols in plant stress responses. In spite of this, very little is known about their metabolism. At present, only a limited number of genes encoding enzymes participating in conjugated sterol metabolism have been cloned and characterized in plants. The aim of this review is to update the current knowledge about the tissue and cellular distribution of conjugated sterols in plants and the enzymes involved in their biosynthesis. We also discuss novel aspects on the role of conjugated sterols in plant development and stress responses recently unveiled using forward- and reverse-genetic approaches., (Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2017
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209. Breaking new ground in the regulation of the early steps of plant isoprenoid biosynthesis.
- Author
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Rodríguez-Concepción M and Boronat A
- Subjects
- Erythritol metabolism, Metabolic Networks and Pathways, Plants chemistry, Erythritol analogs & derivatives, Mevalonic Acid metabolism, Plants metabolism, Protein Processing, Post-Translational, Sugar Phosphates metabolism, Terpenes metabolism
- Abstract
The common metabolic precursors used for the production of all isoprenoid compounds are synthesized by two unrelated pathways in plants. The methylerythritol 4-phosphate (MEP) pathway produces these precursors in the plastid, whereas the biosynthesis of non-plastidial isoprenoids relies on the operation of the mevalonic acid (MVA) pathway. Despite the physical separation of the two pathways, some interaction exists at molecular and metabolic levels. Recent results have provided strong evidence that a high degree of control over each individual pathway takes place at the post-translational level. In particular, new mechanisms regulating the levels and activity of rate-determining enzymes have been unveiled. Current challenges include the study of the subcellular operation of the MEP and MVA pathways and their coordination with upstream and downstream pathways that supply their substrates and consume their products., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2015
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210. A hydrophobic proline-rich motif is involved in the intracellular targeting of temperature-induced lipocalin.
- Author
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Hernández-Gras F and Boronat A
- Subjects
- Base Sequence, DNA Primers, Hydrophobic and Hydrophilic Interactions, Lipocalins chemistry, Polymerase Chain Reaction, Subcellular Fractions metabolism, Lipocalins metabolism, Proline metabolism, Temperature
- Abstract
Temperature-induced lipocalins (TILs) play an essential role in the response of plants to different abiotic stresses. In agreement with their proposed role in protecting membrane lipids, TILs have been reported to be associated to cell membranes. However, TILs show an overall hydrophilic character and do not contain any signal for membrane targeting nor hydrophobic sequences that could represent transmembrane domains. Arabidopsis TIL (AtTIL) is considered the ortholog of human ApoD, a protein known to associate to membranes through a short hydrophobic loop protruding from strands 5 and 6 of the lipocalin β-barrel. An equivalent loop (referred to as HPR motif) is also present between β-strands 5 and 6 of TILs. The HPR motif, which is highly conserved among TIL proteins, extends over as short stretch of eight amino acids and contains four invariant proline residues. Subcellular localization studies have shown that TILs are targeted to a variety of cell membranes and organelles. We have also found that the HPR motif is necessary and sufficient for the intracellular targeting of TILs. Modeling studies suggest that the HPR motif may directly anchor TILs to cell membranes, favoring in this way further contact with the polar group of membrane lipids. However, some particular features of the HPR motif open the possibility that targeting of TILs to cell membranes could be mediated by interaction with other proteins. The functional analysis of the HPR motif unveils the existence of novel mechanisms involved in the intracellular targeting of proteins in plants.
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- 2015
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211. Terpenoid biosynthesis in prokaryotes.
- Author
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Boronat A and Rodríguez-Concepción M
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- Archaea metabolism, Bacteria metabolism, Bacteriochlorophylls chemistry, Carotenoids chemistry, Cell Membrane metabolism, Cell Wall metabolism, Chlorophyll chemistry, Drug Design, Fungi metabolism, Mitochondria metabolism, Plastids metabolism, Rhodopsin chemistry, Terpenes chemistry, Ubiquinone chemistry, Vitamin K 2 chemistry, Terpenes metabolism
- Abstract
Prokaryotic organisms (archaea and eubacteria) are found in all habitats where life exists on our planet. This would not be possible without the astounding biochemical plasticity developed by such organisms. Part of the metabolic diversity of prokaryotes was transferred to eukaryotic cells when endosymbiotic prokaryotes became mitochondria and plastids but also in a large number of horizontal gene transfer episodes. A group of metabolites produced by all free-living organisms is terpenoids (also known as isoprenoids). In prokaryotes, terpenoids play an indispensable role in cell-wall and membrane biosynthesis (bactoprenol, hopanoids), electron transport (ubiquinone, menaquinone), or conversion of light into chemical energy (chlorophylls, bacteriochlorophylls, rhodopsins, carotenoids), among other processes. But despite their remarkable structural and functional diversity, they all derive from the same metabolic precursors. Here we describe the metabolic pathways producing these universal terpenoid units and provide a complete picture of the main terpenoid compounds found in prokaryotic organisms.
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- 2015
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212. Tomato fruit chromoplasts behave as respiratory bioenergetic organelles during ripening.
- Author
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Renato M, Pateraki I, Boronat A, and Azcón-Bieto J
- Subjects
- Adenosine Triphosphate biosynthesis, Adenosine Triphosphate metabolism, Cytochromes metabolism, Energy Metabolism, Solanum lycopersicum physiology, NAD metabolism, NADP metabolism, Plastids physiology, Solanum lycopersicum metabolism, Plastids metabolism
- Abstract
During tomato (Solanum lycopersicum) fruit ripening, chloroplasts differentiate into photosynthetically inactive chromoplasts. It was recently reported that tomato chromoplasts can synthesize ATP through a respiratory process called chromorespiration. Here we show that chromoplast oxygen consumption is stimulated by the electron donors NADH and NADPH and is sensitive to octyl gallate (Ogal), a plastidial terminal oxidase inhibitor. The ATP synthesis rate of isolated chromoplasts was dependent on the supply of NAD(P)H and was fully inhibited by Ogal. It was also inhibited by the proton uncoupler carbonylcyanide m-chlorophenylhydrazone, suggesting the involvement of a chemiosmotic gradient. In addition, ATP synthesis was sensitive to 2,5-dibromo-3-methyl-6-isopropyl-p-benzoquinone, a cytochrome b6f complex inhibitor. The possible participation of this complex in chromorespiration was supported by the detection of one of its components (cytochrome f) in chromoplasts using immunoblot and immunocytochemical techniques. The observed increased expression of cytochrome c6 during ripening suggests that it could act as electron acceptor of the cytochrome b6f complex in chromorespiration. The effects of Ogal on respiration and ATP levels were also studied in tissue samples. Oxygen uptake of mature green fruit and leaf tissues was not affected by Ogal, but was inhibited increasingly in fruit pericarp throughout ripening (up to 26% in red fruit). Similarly, Ogal caused a significant decrease in ATP content of red fruit pericarp. The number of energized mitochondria, as determined by confocal microscopy, strongly decreased in fruit tissue during ripening. Therefore, the contribution of chromoplasts to total fruit respiration appears to increase in late ripening stages., (© 2014 American Society of Plant Biologists. All Rights Reserved.)
- Published
- 2014
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213. Determination of 3-hydroxy-3-methylglutaryl CoA reductase activity in plants.
- Author
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Campos N, Arró M, Ferrer A, and Boronat A
- Subjects
- Chromatography, Thin Layer, Hydroxymethylglutaryl CoA Reductases isolation & purification, Substrate Specificity, Arabidopsis enzymology, Enzyme Assays methods, Hydroxymethylglutaryl CoA Reductases metabolism
- Abstract
The enzyme 3-hydroxy-3-methylglutaryl CoA (HMG-CoA) reductase catalyzes the NADPH-mediated reductive deacylation of HMG-CoA to mevalonic acid, which is the first committed step of the mevalonate pathway for isoprenoid biosynthesis. In agreement with its key regulatory role in the pathway, plant HMG-CoA reductase is modulated by many diverse external stimuli and endogenous factors and can be detected to variable levels in every plant tissue. A fine determination of HMG-CoA reductase activity levels is required to understand its contribution to plant development and adaptation to changing environmental conditions. Here, we report a procedure to reliably determine HMG-CoA reductase activity in plants. The method includes the sample collection and homogenization strategies as well as the specific activity determination based on a classical radiochemical assay.
- Published
- 2014
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214. Cloning and functional characterization of an enzyme from Helicobacter pylori that catalyzes two steps of the methylerythritol phosphate pathway for isoprenoid biosynthesis.
- Author
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Pérez-Gil J, Bergua M, Boronat A, and Imperial S
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- Anti-Bacterial Agents chemistry, Anti-Bacterial Agents therapeutic use, Bacterial Proteins antagonists & inhibitors, Bacterial Proteins genetics, Cloning, Molecular, Drug Design, Drug Resistance, Bacterial drug effects, Drug Resistance, Bacterial genetics, Enzyme Inhibitors chemistry, Enzyme Inhibitors therapeutic use, Erythritol genetics, Genetic Complementation Test, Helicobacter Infections drug therapy, Helicobacter Infections genetics, Helicobacter pylori genetics, Phosphorus-Oxygen Lyases antagonists & inhibitors, Phosphorus-Oxygen Lyases genetics, Terpenes metabolism, Bacterial Proteins metabolism, Erythritol analogs & derivatives, Erythritol metabolism, Helicobacter Infections enzymology, Helicobacter pylori enzymology, Phosphorus-Oxygen Lyases metabolism
- Abstract
Background: The methylerythritol phosphate pathway for isoprenoid biosynthesis is an attractive target for the design of new specific antibiotics for the treatment of gastrointestinal diseases associated with the presence of the bacterium Helicobacter pylori since this pathway which is essential to the bacterium is absent in humans., Results: This work reports the molecular cloning of one of the genes of the methylerythritol phosphate pathway form H. pylori (ispDF; HP_1440) its expression in Escherichia coli and the functional characterization of the recombinant enzyme. As shown by genetic complementation and in vitro functional assays the product of the ispDF gene form H. pylori is a bifunctional enzyme which can replace both CDP-methylerythritol synthase and methylerythritol cyclodiphosphate synthase from E. coli., General Significance: Designing inhibitors that affect at the same time both enzyme activities of the H. pylori bifunctional enzyme (i.e. by disrupting protein oligomerization) would result in more effective antibiotics which would be able to continue their action even if the bacterium acquired a resistance to another antibiotic directed against one of the individual activities., Conclusion: The bifunctional enzyme would be an excellent target for the design of new, selective antibiotics for the treatment of H. pylori associated diseases., (Copyright © 2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
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215. The plastidial MEP pathway: unified nomenclature and resources.
- Author
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Phillips MA, León P, Boronat A, and Rodríguez-Concepción M
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- Arabidopsis genetics, Biosynthetic Pathways genetics, Erythritol metabolism, Genes, Bacterial, Mutation, Arabidopsis metabolism, Erythritol analogs & derivatives, Plastids metabolism, Sugar Phosphates metabolism, Terminology as Topic, Terpenes metabolism
- Abstract
In plants, the plastid-localized 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway provides the precursors for the synthesis of isoprenoid hormones, monoterpenes, carotenoids and the side chain of chlorophylls, tocopherols and prenylquinones. As a result of the fast progress in the elucidation and characterization of the pathway (mainly by genetic approaches in Escherichia coli and Arabidopsis thaliana), different names have been used in the literature to designate the orthologous bacterial and plant genes and the corresponding null and partial loss-of-function mutants. This has led to a confusing variety of naming conventions in this field. Here, we propose a reorganization of the various naming systems with the aim of facilitating the dissemination and sharing of genetic resources and tools central to plant isoprenoid research.
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- 2008
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216. Arabidopsis thaliana contains a single gene encoding squalene synthase.
- Author
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Busquets A, Keim V, Closa M, del Arco A, Boronat A, Arró M, and Ferrer A
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- Amino Acid Sequence, Arabidopsis enzymology, Arabidopsis Proteins chemistry, Arabidopsis Proteins metabolism, Endoplasmic Reticulum metabolism, Farnesyl-Diphosphate Farnesyltransferase chemistry, Farnesyl-Diphosphate Farnesyltransferase metabolism, Gene Expression Profiling, Genetic Complementation Test, Green Fluorescent Proteins analysis, Molecular Sequence Data, Onions genetics, Onions ultrastructure, Plants, Genetically Modified metabolism, Protein Structure, Tertiary, Protein Transport, Saccharomyces cerevisiae genetics, Sequence Alignment, Arabidopsis genetics, Arabidopsis Proteins genetics, Farnesyl-Diphosphate Farnesyltransferase genetics
- Abstract
Squalene synthase (SQS) catalyzes the condensation of two molecules of farnesyl diphosphate (FPP) to produce squalene (SQ), the first committed precursor for sterol, brassinosteroid, and triterpene biosynthesis. Arabidopsis thaliana contains two SQS-annotated genomic sequences, At4g34640 (SQS1) and At4g34650 (SQS2), organized in a tandem array. Here we report that the SQS1 gene is widely expressed in all tissues throughout plant development, whereas SQS2 is primarily expressed in the vascular tissue of leaf and cotyledon petioles, and the hypocotyl of seedlings. Neither the complete A. thaliana SQS2 protein nor the chimeric SQS resulting from the replacement of the 69 C-terminal residues of SQS2 by the 111 C-terminal residues of the Schizosaccharomyces pombe SQS were able to confer ergosterol prototrophy to a Saccharomyces cerevisiae erg9 mutant strain lacking SQS activity. A soluble form of SQS2 expressed in Escherichia coli and purified was unable to synthesize SQ from FPP in the presence of NADPH and either Mg2+ or Mn2+. These results demonstrated that SQS2 has no SQS activity, so that SQS1 is the only functional SQS in A. thaliana. Mutational studies revealed that the lack of SQS activity of SQS2 cannot be exclusively attributed to the presence of an unusual Ser replacing the highly conserved Phe at position 287. Expression of green fluorescent protein (GFP)-tagged versions of SQS1 in onion epidermal cells demonstrated that SQS1 is targeted to the endoplasmic reticulum (ER) membrane and that this location is exclusively dependent on the presence of the SQS1 C-terminal hydrophobic trans-membrane domain.
- Published
- 2008
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217. Enhanced flux through the methylerythritol 4-phosphate pathway in Arabidopsis plants overexpressing deoxyxylulose 5-phosphate reductoisomerase.
- Author
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Carretero-Paulet L, Cairó A, Botella-Pavía P, Besumbes O, Campos N, Boronat A, and Rodríguez-Concepción M
- Subjects
- Arabidopsis enzymology, Arabidopsis genetics, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Base Sequence, DNA Primers, Plastids metabolism, RNA, Messenger genetics, Terpenes metabolism, Aldose-Ketose Isomerases metabolism, Arabidopsis metabolism, Multienzyme Complexes metabolism, Oxidoreductases metabolism, Phosphates metabolism
- Abstract
The methylerythritol 4-phosphate (MEP) pathway synthesizes the precursors for an astonishing diversity of plastid isoprenoids, including the major photosynthetic pigments chlorophylls and carotenoids. Since the identification of the first two enzymes of the pathway, deoxyxylulose 5-phoshate (DXP) synthase (DXS) and DXP reductoisomerase (DXR), they both were proposed as potential control points. Increased DXS activity has been shown to up-regulate the production of plastid isoprenoids in all systems tested, but the relative contribution of DXR to the supply of isoprenoid precursors is less clear. In this work, we have generated transgenic Arabidopsis thaliana plants with altered DXS and DXR enzyme levels, as estimated from their resistance to clomazone and fosmidomycin, respectively. The down-regulation of DXR resulted in variegation, reduced pigmentation and defects in chloroplast development, whereas DXR-overexpressing lines showed an increased accumulation of MEP- derived plastid isoprenoids such as chlorophylls, carotenoids, and taxadiene in transgenic plants engineered to produce this non-native isoprenoid. Changes in DXR levels in transgenic plants did not result in changes in DXS gene expression or enzyme accumulation, confirming that the observed effects on plastid isoprenoid levels in DXR-overexpressing lines were not an indirect consequence of altering DXS levels. The results indicate that the biosynthesis of MEP (the first committed intermediate of the pathway) limits the production of downstream isoprenoids in Arabidopsis chloroplasts, supporting a role for DXR in the control of the metabolic flux through the MEP pathway.
- Published
- 2006
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218. A colorimetric assay for the determination of 4-diphosphocytidyl-2-C-methyl-D-erythritol 4-phosphate synthase activity.
- Author
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Bernal C, Palacin C, Boronat A, and Imperial S
- Subjects
- Colorimetry methods, Erythritol biosynthesis, Erythritol metabolism, Escherichia coli Proteins metabolism, Inorganic Pyrophosphatase, Nucleotidyltransferases metabolism, Phosphates, Rosaniline Dyes, Spectrum Analysis, Erythritol analogs & derivatives, Erythritol analysis, Escherichia coli Proteins analysis, Nucleotidyltransferases analysis
- Abstract
A new method for the determination of the activity of 4-diphosphocytidyl-2-C-methyl-D-erythritol 4-phosphate synthase, the enzyme catalyzing the third reaction of the 2-C-methyl-D-erythritol 4-phosphate pathway for biosynthesis of isoprenoids, is described. This is an end-point assay based on the transformation of inorganic pyrophosphate, one of the products of the reaction, to phosphate by using inorganic pyrophosphatase as auxiliary enzyme. The phosphate formed is reacted then with the dye malachite green to yield a colored product which can be determined spectrophotometrically. The method is easy to perform, sensitive, and robust and can be used in automated high-throughput screening analyses for the search of inhibitors of the enzyme.
- Published
- 2005
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219. Determination of the Rh factor: A practical illustrating the use of the polymerase chain reaction.
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Imperial S and Boronat A
- Abstract
A practical experiment on the PCR is described that has been used over several years as part of an undergraduate biochemistry and molecular biology course for chemistry students. In the first experimental session, students prepare their own DNA samples from epithelial cells of the mouth and use them as templates in the PCR. In the second session, they analyze the amplified DNA by electrophoresis and determine their Rh factor., (Copyright © 2005 International Union of Biochemistry and Molecular Biology, Inc.)
- Published
- 2005
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220. The metabolic imbalance underlying lesion formation in Arabidopsis thaliana overexpressing farnesyl diphosphate synthase (isoform 1S) leads to oxidative stress and is triggered by the developmental decline of endogenous HMGR activity.
- Author
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Manzano D, Fernández-Busquets X, Schaller H, González V, Boronat A, Arró M, and Ferrer A
- Subjects
- Alkyl and Aryl Transferases physiology, Arabidopsis genetics, Arabidopsis growth & development, Gene Expression Regulation, Plant, Geranyltranstransferase, Hydroxymethylglutaryl CoA Reductases physiology, Isoenzymes biosynthesis, Isoenzymes physiology, Mevalonic Acid metabolism, Oxidative Stress physiology, Plant Leaves genetics, Plant Leaves growth & development, Plant Leaves metabolism, Plants, Genetically Modified, Time Factors, Alkyl and Aryl Transferases biosynthesis, Arabidopsis metabolism, Hydroxymethylglutaryl CoA Reductases metabolism
- Abstract
Overexpression of Arabidopsis thaliana farnesyl diphosphate synthase isoform 1S (FPS1S) in transgenic A. thaliana (L.) Heynh. leads to necrotic lesion formation in leaves in planta and to premature senescence in detached leaves [A. Masferrer et al. (2002) Plant J 30:123-132]. Here we report that leaves of plants overexpressing FPS1S with symptoms of necrosis show increased H2O2 formation and induction of both the pathogenesis-related 1 (PR-1) and the alternative oxidase 1a (AOX1a) genes. These findings indicate that plants overexpressing FPS1S should be considered as lesion-mimic mutants and lead us to propose that H2O2 is the main inducing agent of necrosis in these plants. The onset of necrosis appears in a developmentally regulated manner that correlates with the developmental decline of endogenous 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR) activity. Accordingly, constitutive overexpression of HMGR in plants overexpressing FPS1S prevents both necrosis and premature senescence. These observations demonstrate that both phenotypes are due to an insufficient supply of mevalonic acid and support the notion that the metabolic imbalance associated with FPS1S overexpression is, in fact, triggered by the developmental decline of HMGR activity. We also show that overexpression of FPS1S alleviates growth inhibition caused by overexpression of the catalytic domain of isoform HMGR1S. Overall, our results reinforce the view that the levels of specific intermediates of the mevalonic acid pathway must be strictly controlled, particularly those located at branch-point positions, in order to avoid deleterious effects on plant growth and development.
- Published
- 2004
- Full Text
- View/download PDF
221. Bioinformatic and molecular analysis of hydroxymethylbutenyl diphosphate synthase (GCPE) gene expression during carotenoid accumulation in ripening tomato fruit.
- Author
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Rodríguez-Concepción M, Querol J, Lois LM, Imperial S, and Boronat A
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Northern, Enzymes metabolism, Expressed Sequence Tags, Fruit enzymology, Fruit growth & development, Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant, Solanum lycopersicum enzymology, Solanum lycopersicum growth & development, Molecular Sequence Data, Plant Proteins genetics, Plant Proteins metabolism, Sequence Homology, Amino Acid, Carotenoids biosynthesis, Computational Biology methods, Enzymes genetics, Fruit genetics, Solanum lycopersicum genetics
- Abstract
Carotenoids are plastidic isoprenoid pigments of great biological and biotechnological interest. The precursors for carotenoid production are synthesized through the recently elucidated methylerythritol phosphate (MEP) pathway. Here we have identified a tomato ( Lycopersicon esculentum Mill.) cDNA sequence encoding a full-length protein with homology to the MEP pathway enzyme hydroxymethylbutenyl 4-diphosphate synthase (HDS, also called GCPE). Comparison with other plant and bacterial HDS sequences showed that the plant enzymes contain a plastid-targeting N-terminal sequence and two highly conserved plant-specific domains in the mature protein with no homology to any other sequence in the databases. The ubiquitous distribution of HDS-encoding expressed sequence tags (ESTs) in the tomato collections suggests that the corresponding gene is likely expressed throughout the plant. The role of HDS in controlling the supply of precursors for carotenoid biosynthesis was estimated from the bioinformatic and molecular analysis of transcript abundance in different stages of fruit development. No significant changes in HDS gene expression were deduced from the statistical analysis of EST distribution during fruit ripening, when an active MEP pathway is required to support a massive accumulation of carotenoids. RNA blot experiments confirmed that similar transcript levels were present in both the wild-type and carotenoid-depleted yellow ripe ( r) mutant fruit independent of the stage of development and the carotenoid composition of the fruit. Together, our results are consistent with a non-limiting role for HDS in carotenoid biosynthesis during tomato fruit ripening.
- Published
- 2003
- Full Text
- View/download PDF
222. Isoprenoid biosynthesis through the methylerythritol phosphate pathway: the (E)-4-hydroxy-3-methylbut-2-enyl diphosphate synthase (GcpE) is a [4Fe-4S] protein.
- Author
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Seemann M, Bui BT, Wolff M, Tritsch D, Campos N, Boronat A, Marquet A, and Rohmer M
- Subjects
- Bacterial Proteins chemistry, Erythritol chemistry, Escherichia coli metabolism, Iron chemistry, Oxidation-Reduction, Spectrophotometry, Ultraviolet, Sugar Phosphates chemistry, Sulfur chemistry, Bacterial Proteins metabolism, Enzymes, Erythritol analogs & derivatives, Erythritol metabolism, Iron metabolism, Sugar Phosphates metabolism, Sulfur metabolism, Terpenes metabolism
- Published
- 2002
- Full Text
- View/download PDF
223. Elucidation of the methylerythritol phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A metabolic milestone achieved through genomics.
- Author
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Rodríguez-Concepción M and Boronat A
- Subjects
- Amino Acid Sequence, Arabidopsis drug effects, Arabidopsis genetics, Arabidopsis metabolism, Bacteria metabolism, Computational Biology methods, Escherichia coli genetics, Escherichia coli metabolism, Fosfomycin pharmacology, Genomics methods, Indoles metabolism, Solanum lycopersicum drug effects, Solanum lycopersicum genetics, Solanum lycopersicum metabolism, Mevalonic Acid metabolism, Molecular Sequence Data, Plastids metabolism, Polyisoprenyl Phosphates antagonists & inhibitors, Sequence Homology, Amino Acid, Bacteria genetics, Erythritol analogs & derivatives, Erythritol metabolism, Fosfomycin analogs & derivatives, Plastids genetics, Polyisoprenyl Phosphates biosynthesis, Sugar Phosphates metabolism
- Published
- 2002
- Full Text
- View/download PDF
224. Expression and molecular analysis of the Arabidopsis DXR gene encoding 1-deoxy-D-xylulose 5-phosphate reductoisomerase, the first committed enzyme of the 2-C-methyl-D-erythritol 4-phosphate pathway.
- Author
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Carretero-Paulet L, Ahumada I, Cunillera N, Rodríguez-Concepción M, Ferrer A, Boronat A, and Campos N
- Subjects
- Amino Acid Sequence, Arabidopsis metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Cloning, Molecular, Escherichia coli genetics, Gene Expression Regulation, Enzymologic, Gene Expression Regulation, Plant, Genetic Complementation Test, Microscopy, Electron, Molecular Sequence Data, Mutation, Plant Leaves enzymology, Plant Leaves genetics, Plant Leaves ultrastructure, Plants, Genetically Modified, Polyisoprenyl Phosphates biosynthesis, Sequence Analysis, Protein, Sequence Homology, Amino Acid, Aldose-Ketose Isomerases genetics, Arabidopsis genetics, Erythritol analogs & derivatives, Erythritol metabolism, Multienzyme Complexes genetics, Oxidoreductases genetics, Sugar Phosphates metabolism
- Abstract
1-Deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-D-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. We have cloned a full-length cDNA corresponding to this gene. A comparative analysis of all plant DXR sequences known to date predicted an N-terminal transit peptide for plastids, with a conserved cleavage site, and a conserved proline-rich region at the N terminus of the mature protein, which is not present in the prokaryotic DXR homologs. We demonstrate that Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. The presence of the proline-rich region in the mature Arabidopsis DXR was confirmed by detection with a specific antibody. A proof of the enzymatic function of this protein was obtained by complementation of an Escherichia coli mutant defective in DXR activity. The expression pattern of beta-glucuronidase, driven by the DXR promoter in Arabidopsis transgenic plants, together with the tissue distribution of DXR transcript and protein, revealed developmental and environmental regulation of the DXR gene. The expression pattern of the DXR gene parallels that of the Arabidopsis 1-deoxy-D-xylulose 5-phosphate synthase gene, but the former is slightly more restricted. These genes are expressed in most organs of the plant including roots, with higher levels in seedlings and inflorescences. The block of the 2-C-methyl-D-erythritol 4-phosphate pathway in Arabidopsis seedlings with fosmidomycin led to a rapid accumulation of DXR protein, whereas the 1-deoxy-D-xylulose 5-phosphate synthase protein level was not altered. Our results are consistent with the participation of the Arabidopsis DXR gene in the control of the 2-C-methyl-D-erythritol 4-phosphate pathway.
- Published
- 2002
- Full Text
- View/download PDF
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