4,418 results on '"Blake M"'
Search Results
402. 149. Increasing Oxacillin Resistance of Staphylococcus lugdunensis Over Time, Utilizing Whole Genome Sequencing to Characterize Resistance
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Kristin Constance, Yuriko Fukuta, Elizabeth Penner, Todd M Lasco, Audrey Wanger, Blake M Hanson, and Masayuki Nigo
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Infectious Diseases ,Oncology - Abstract
Background Staphylococcus lugdunensis (SL) is a coagulase negative staphylococci (CoNS) demonstrating more virulent pathogenicity compared to other CoNS. With implementation of rapid diagnostics such as multiplex PCR on blood culture and use of MALDI-TOF (MALDI), CoNS can now be routinely specifically identified as SL. We sought to describe the antibiotic susceptibility of SL over time, and to utilize whole genome sequencing (WGS) to identify the characteristics of oxacillin (OXA) resistant SL. Methods Retrospective review of all culture isolates positive for SL from two major hospital systems, Memorial Hermann Hospital System (MHHS) and Baylor St. Lukes Medical Center (BSLMC) in Houston, TX. MALDI was implemented in 2016 at BSLMC and 2019 at MHHS. MHHS utilizes Microscan®, and BSLMC utilizes Vitek2® for susceptibility testing. For this study, all duplicated isolates within a 2-week period were excluded. Six patient isolates, three OXA resistant and three susceptible, were sent for WGS and analysis. Results Between 2014 and 2021, 744 culture isolates were identified as SL, 325 from MHHS and 419 from BSLMC (Fig 1). An increasing trend was observed at MHHS over time, however this trend was not observed at BSLMC. 83.6% (622/744) of isolates were susceptible to OXA. An overall trend towards increasing resistance was observed over time (Fig 2). Six isolates, three OXA susceptible (S) and three resistant (R), were sent for WGS. The R isolates were found to share the same sequence type (ST3), and while they were not clonal, were closely related and all harbored an SCCmec cassette most closely related to SCCmec type IVg. Conclusion In our study, an increasing number of isolates were identified at MHHS over time. This finding may be related to implementation of MALDI. Overall OXA susceptibility was lower than expected at 83.6%, when compared to a prior large-scale United States based study in 2017 demonstrating 95.3% susceptibility. This finding of developing resistance is concerning. While WGS analysis of R isolates did not demonstrate clonality, it did show close relation. This data may suggest expansion of an emerging lineage, however more isolates will need to be studied for conclusion given limited sample size. Disclosures All Authors: No reported disclosures.
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- 2022
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403. 152. Molecular Epidemiological Analysis of Relapsed Gram-negative Bloodstream Infection Isolates
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Joshua B Parsons, Andrew Bock, Blake M Hanson, Brian P Conlon, Cesar A Arias, Vance G Fowler, and Joshua T Thaden
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Infectious Diseases ,Oncology - Abstract
Background Gram-negative bacterial bloodstream infections (GNB-BSI) are common and frequently lethal. Many patients experience multiple episodes of GNB-BSI for unclear reasons. This study examines the genetic differences between initial and subsequent isolates of recurrent GNB-BSI. Methods We used a prospective cohort of patients with GNB-BSI at Duke Hospital to identify patients with >1 episode of GNB-BSI due to the same bacterial species. We performed pulsed field gel electrophoresis (PFGE) on paired isolates to determine if the events were Reinfection (paired isolates different) or Relapse (paired isolates genetically identical). We then used whole genome sequencing (WGS) to verify the PFGE findings and explore the genetic similarity between initial and relapsed GNB-BSI isolates. Results Among 1,423 unique patients with GNB-BSI, 60 (4%) experienced recurrent GNB-BSI with the same bacterial species. We performed genotyping (PFGE, followed by WGS) on the paired bacterial isolates from the index and recurrent bloodstream infections for the four most common species in our study population (Escherichia coli, Klebsiella species, Pseudomonas aeruginosa, and Serratia marcescens) (n=48 pairs). We determined that 63% (30/48) of recurrent GNB-BSI episodes were due to relapse and 37% (18/48) were due to reinfection. PFGE correctly identified relapse versus reinfection in 98% (47/48) of cases. The WGS data illustrated the microevolution of relapsed GNB-BSI isolates within patients. When comparing initial to relapsed isolates, we calculated a median of 5 single-nucleotide polymorphisms (SNPs) in relapsed E. coli isolates and 2 SNPs in Klebsiella spp. isolates. Of these SNPs, 37% (E. coli) and 12% (Klebsiella) were non-synonymous changes in coding regions, most commonly genes associated with antimicrobial resistance (AMR), energy metabolism and stress response. Alterations in the AMR profile was common, with 20/30 relapsed isolates demonstrating either loss or acquisition of AMR. Figure 1:Time from initial to recurrent episode of gram-negative bloodstream infection. Relapse (i.e., same bacterial strain noted by green circle) versus reinfection (i.e., different bacterial strain noted by red circle) was determined by pulse field gel electrophoresis followed by WGS. Whole genome sequencing was performed on the initial and recurrent isolate from patients with relapsed GNB-BSI. We identified single nucleotide polymorphisms (SNPs) present in the recurrent isolate, which were not present in the initial isolate. We identified the function of genes containing SNPs in E. coli (n=28 SNPs) and Klebsiella spp. (n=13 SNPs). Synonymous mutations, insertions, deletions, and non-synonymous mutations in hypothetical proteins were excluded. Conclusion Most recurrent GNB-BSI with same species are due to relapse. PFGE has comparable accuracy to WGS to determine reinfection versus relapse. Multiple mutations in genes involved in stress response, AMR and metabolism were identified in relapsed isolates. Disclosures Vance G. Fowler, Jr, MD, MHS, Affinergy: Grant/Research Support|Affinergy: Honoraria|Affinium: Honoraria|Amphliphi Biosciences: Honoraria|ArcBio: Stocks/Bonds|Basilea: Grant/Research Support|Basilea: Honoraria|Bayer: Honoraria|C3J: Honoraria|Cerexa/Forest/Actavis/Allergan: Grant/Research Support|Contrafect: Grant/Research Support|Contrafect: Honoraria|Cubist/Merck: Grant/Research Support|Debiopharm: Grant/Research Support|Deep Blue: Grant/Research Support|Destiny: Honoraria|Genentech: Grant/Research Support|Genentech: Honoraria|Integrated Biotherapeutics: Honoraria|Janssen: Grant/Research Support|Janssen: Honoraria|Karius: Grant/Research Support|Medicines Co.: Honoraria|MedImmune: Grant/Research Support|MedImmune: Honoraria|NIH: Grant/Research Support|Novartis: Grant/Research Support|Novartis: Honoraria|Pfizer: Grant/Research Support|Regeneron: Grant/Research Support|Regeneron: Honoraria|Sepsis diagnostics: Sepsis diagnostics patent pending|UpToDate: Royalties|Valanbio: Stocks/Bonds.
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- 2022
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404. 229. Molecular and Clinical Epidemiology of Carbapenemase-Producing E. coli Isolates from Different Global Regions (CRACKLE-2)
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Angelique E Boutzoukas, Lauren Komarow, Liang Chen, Keri R Baum, Vance G Fowler, Carol Hill, Cesar A Arias, Blake M Hanson, David Paterson, Lizhao Ge, Karen M Ordonez, Soraya Salcedo Mendoza Salcedo, Souha S Kanj, Robert Bonomo, and David van Duin
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Infectious Diseases ,Oncology - Abstract
Background Carbapenemase-producing (CP) Escherichia coli (CPEc) are a global public health threat. We describe the epidemiology and outcomes of patients with CPEc isolates obtained in CRACKLE 2, a prospective cohort study of hospitalized patients with positive cultures for CP Enterobacteriaceae. Methods In CRACKLE-2, patients with CPEc were enrolled from 26 hospitals in 6 countries (ClinicalTrials.gov NCT03646227). Clinical data were collected, and bacterial isolates underwent whole genome sequencing (WGS). Here, we included unique patients with CPEc by WGS (n=114). The primary outcome was desirability of outcome ranking (DOOR) at 30 days after index culture. Chi squared tests with alpha = 0.05 were used to evaluate differences in culture source and outcomes between metallo-beta-lactamase (MBL) and non-MBL isolates. Results Of 114 CPEc isolates, 57 (50%) represented infection (Table 1). Isolates primarily arose from urine (34%) and blood (21%). Compared to non-MBL isolates, isolates containing MBL were more often from urine (41% vs 29%) and less frequently from blood (6% vs 32%); p=0.02. We observed strong regional variations in CP (Figure 1) and MBL (p < 0.0001). Sequence type (ST) 167 was more common among MBL than non-MBL isolates (31% vs 2%, p< 0.0001); non-MBL isolates were more often ST410 and ST131 (17% and 20%). Extended-spectrum beta-lactamases (ESBL) were present in 52% of isolates; most commonly, CTX-M-15 in both MBL (33%) and non-MBL isolates (34%). Phylogenetic analysis of the isolates and corresponding region, bacterial characteristics, and DOOR outcomes are in Figure 1. Death at 30 days occurred in 18 (16%) of patients, more commonly among non-MBL than MBL CPEc (23% vs 6%; p=0.01). The probability of a better DOOR outcome for a randomly selected MBL was 58% [95% CI: 48.2, 67.4], indicating no significant difference between the groups. Figure 1:Phylogenetic population structures of Carbapenemase-producing Escherichia coli (CPEc) isolates Legend: Infection = categorization as infection or colonization. ST = sequence type. BlaCarb = Carbapenemase gene. BlaESBL = acquired ESBL enzymes. DOOR = desirability of outcome ranking. DOOR rankings: 1 = Alive without events; DOOR 2 = Alive with 1 event; DOOR 3 = Alive with 2 or 3 events; DOOR 4 = dead. Conclusion Emergence of carbapenem resistance with important geographic variations was observed in E coli including among high-risk clones such as ST131. Mortality was higher among non-MBL isolates, which were more frequently from blood, but these findings may be confounded by region. Disclosures Vance G. Fowler, Jr, MD, MHS, Affinergy: Grant/Research Support|Affinergy: Honoraria|Affinium: Honoraria|Amphliphi Biosciences: Honoraria|ArcBio: Stocks/Bonds|Basilea: Grant/Research Support|Basilea: Honoraria|Bayer: Honoraria|C3J: Honoraria|Cerexa/Forest/Actavis/Allergan: Grant/Research Support|Contrafect: Grant/Research Support|Contrafect: Honoraria|Cubist/Merck: Grant/Research Support|Debiopharm: Grant/Research Support|Deep Blue: Grant/Research Support|Destiny: Honoraria|Genentech: Grant/Research Support|Genentech: Honoraria|Integrated Biotherapeutics: Honoraria|Janssen: Grant/Research Support|Janssen: Honoraria|Karius: Grant/Research Support|Medicines Co.: Honoraria|MedImmune: Grant/Research Support|MedImmune: Honoraria|NIH: Grant/Research Support|Novartis: Grant/Research Support|Novartis: Honoraria|Pfizer: Grant/Research Support|Regeneron: Grant/Research Support|Regeneron: Honoraria|Sepsis diagnostics: Sepsis diagnostics patent pending|UpToDate: Royalties|Valanbio: Stocks/Bonds Cesar A. Arias, MD, PhD, Entasis Phramceuticals: Grant/Research Support|MeMed Diagnostics: Grant/Research Support|Merck: Grant/Research Support David Paterson, MBBS, Accelerate: Honoraria|bioMerieux: Honoraria|Entasis: Advisor/Consultant|Janssen-Cilag: Grant/Research Support|MSD: Advisor/Consultant|MSD: Grant/Research Support|MSD: Honoraria|Pfizer: Grant/Research Support|Pfizer: Honoraria|PPD: Grant/Research Support|Shionogi: Grant/Research Support|VenatoRx: Advisor/Consultant Karen M. Ordonez, MD, AstraZeneca: Expert Testimony|Biomerieux: Expert Testimony|Farma de Colombia: Expert Testimony|MSD: Expert Testimony|Pfizer: Expert Testimony Souha S. Kanj, Pr, MSD, Pfizer, Gilead, Menarini, Astellas: Advisor/Consultant|MSD, Pfizer, Gilead, Menarini, Astellas: Honoraria Robert Bonomo, MD, Cystic Fibrosis Foundation: Grant/Research Support|Merck: Grant/Research Support|NIH: Grant/Research Support|VA: Grant/Research Support|VenatoRx: Grant/Research Support|Wockhardt: Grant/Research Support David van Duin, MD, PhD, Achaogen: Advisor/Consultant|Allergan: Advisor/Consultant|Astellas: Advisor/Consultant|MedImmune: Advisor/Consultant|Melinta: Advisor/Consultant|Merck: Advisor/Consultant|Merck: Grant/Research Support|NeuMedicine: Advisor/Consultant|Pfizer: Advisor/Consultant|Qpex: Advisor/Consultant|Roche: Advisor/Consultant|Sanofi-Pasteur: Advisor/Consultant|Shionogi: Advisor/Consultant|Shionogi: Grant/Research Support|T2 Biosystems: Advisor/Consultant|Tetraphase: Advisor/Consultant.
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- 2022
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405. 128. Association of PBP4 Variants and β-lactam Susceptibility in Enterococcus faecalis
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Truc Cecilia Tran, Shelby R Simar, Stephanie L Egge, Rachel Atterstrom, An Dinh, Blake M Hanson, German Contreras, Marcus Zervos, Lilian M Abbo, Luis Shimose, Samuel A Shelburne, Cesar A Arias, and William R Miller
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Infectious Diseases ,Oncology - Abstract
Background Penicillin-binding protein 4 (PBP4) is a low affinity PBP that has been associated with decreased susceptibility to penicillins in Enterococcus faecalis (Efs). In vitro data have shown that changes in the promoter region leading to increased pbp4 gene expression and amino acid changes resulting in active site remodeling contribute to this phenotype. There is limited data on the prevalence of these strains in the United States. We investigated β-lactam susceptibility trends in association with variations in PBP4 (allotypes) and the upstream promoter region. Methods Efs bloodstream isolates (n=184) were selected from the multicenter VENOUS cohort from 2016 to 2021. Whole genome sequencing (WGS) was performed on all isolates, and changes in the pbp4 gene and promoter region 200 bp upstream of the start codon were identified using Efs JH2-2 as reference. Broth microdilution (BMD) testing for ampicillin (AMP), penicillin (PCN), piperacillin (PIP), and imipenem (IMI) was performed for 81 isolates. Analysis of MICs vs. WGS results was performed. Results A total of 31 PBP4 allotypes and 10 promoter variations were identified. ST6 isolates most frequently carried the promoter mutation ΔA117 (P6), previously shown to increase expression of the pbp4 gene, with allotype 1 PBP4 (Fig 1). ST179 isolates most frequently carried the JH2-2 wild type promoter (P1) with the allotype 30 PBP4. All isolates were susceptible to AMP (MIC50 ≤1 µg/mL, MIC90 2 µg/mL) and PCN (MIC50 ≤2 µg/mL, MIC90 4 µg/mL; Table 1). PIP was the least potent β-lactam, with an MIC50 4 µg/mL and an MIC90 of 8 µg/mL. Isolates with the P6 promoter had significantly higher piperacillin MICs (p< 0.0001) as compared to P1. Figure 1.Phylogenetic Tree of E. faecalis Strains Conclusion Changes in the pbp4 gene promoter correlated with an increase in PIP MICs. Caution should be used when choosing β-lactams other than AMP for definitive treatment deep-seated Efs infections. Disclosures Cesar A. Arias, MD, PhD, Entasis Phramceuticals: Grant/Research Support|MeMed Diagnostics: Grant/Research Support|Merck: Grant/Research Support William R. Miller, MD, Entasis Therapeutics: Grant/Research Support|UpToDate: Royalties - Topic Contributor.
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- 2022
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406. 146. Heteroresistance to cefiderocol among Pseudomonas aeruginosa clinical isolates harboring changes in TonB-dependent receptor pathways and AmpC
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Stephanie L Egge, Samie A Rizvi, Shelby R Simar, An Dinh, Blake M Hanson, Cesar A Arias, Truc Cecilia Tran, and William R Miller
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Infectious Diseases ,Oncology - Abstract
Background Cefiderocol (FDC) is an iron siderophore cephalosporin with activity against multi-drug resistant (MDR) Gram-negative bacteria. Despite high rates of in vitro susceptibility, treatment failure with the emergence of resistance is still a concern. Heteroresistance, or the presence of a resistant sub-population in a strain that tests susceptible by standard methods, has been suggested as a potential mechanism for this observation. Previously, we showed that MDR Pseudomonas aeruginosa (PA) with changes in the iron siderophore transporters (TBDR) responsible for FDC uptake had decreased zone diameters on Kirby-Bauer (KB) testing as compared to MDR-PA with wild-type TBDRs. Here, we investigated the prevalence of heteroresistance (HR) among TBDR mutants using population analysis profile-area under the curve assay (PAP). Table 1.Pseudomonas aeruginosa strain characteristicsFigure 1.PAP-AUC results of Pseudomonas aeruginosa TBDR mutants v. non-mutant controls Methods Previously sequenced MDR-PA isolates were selected for the presence of mutations in TBDR genes within the primary FDC import pathways (pirA, pirRS, piuA, piuD). Isolates harboring pre-existing TBDR mutations (n=12) were compared with wild-type P. aeruginosa strain PA01 and 5 MDR-clinical isolates harboring wild-type TBDRs. FDC MICs were performed by broth microdilution (BMD) in iron depleted media (IDM). For PAP, isolates were grown overnight in IDM before serial dilution and plating on agar with increasing concentrations of FDC. Agreement between BMD, KB, and PAP-AUC HR detection was assessed. Results On BMD, 10 of 12 TBDR isolates tested susceptible to FDC (MIC range ≤0.5-2 µg/mL), and all control isolates had an MIC ≤0.5 µg/mL (Table 1). None of the control strains were HR per PAP (Fig 1). However, in the TBDR group, 50% of isolates showed either a resistant (n=2) or HR (n=4) phenotype. Resistance occurred in the setting of both TBDR mutations and either an exogenous β-lactamase (OXA-15 variant) or AmpC variant (PDC-205). Of the HR isolates, one had a change in AmpC Ω-loop (E221K), while the other three had only the PirR frameshift mutation. BMD was not able to identify any of the HR isolates. Conclusion A greater number of MDR-PA with TBDR mutations showed resistance or HR to FDC than MDR-PA controls with wild-type TBDRs. Mutations in TBDRs could be a marker for FDC non-susceptibility and potential therapeutic failure. Disclosures Cesar A. Arias, MD, PhD, Entasis Phramceuticals: Grant/Research Support|MeMed Diagnostics: Grant/Research Support|Merck: Grant/Research Support William R. Miller, MD, Entasis Therapeutics: Grant/Research Support|UpToDate: Royalties - Topic Contributor.
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- 2022
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407. Evidence of a Sjögren’s disease-like phenotype following COVID-19
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Yiran, Shen, Alexandria, Voigt, Laura, Goranova, Mehdi, Abed, David E, Kleiner, Jose O, Maldonado, Margaret, Beach, Eileen, Pelayo, John A, Chiorini, William F, Craft, David A, Ostrov, Vijay, Ramiya, Sukesh, Sukumaran, Apichai, Tuanyok, Blake M, Warner, and Cuong Q, Nguyen
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ObjectivesSjögren’s Disease (SjD) is a chronic and systemic autoimmune disease characterized by lymphocytic infiltration and the development of dry eyes and dry mouth resulting from the secretory dysfunction of the exocrine glands. SARS-CoV-2 may trigger the development or progression of autoimmune diseases, as evidenced by increased autoantibodies in patients and the presentation of cardinal symptoms of SjD. The objective of the study was to determine whether SARS-CoV-2 induces the signature clinical symptoms of SjD.MethodsThe ACE2-transgenic mice were infected with SARS-CoV-2. SJD profiling was conducted. COVID-19 patients’ sera were examined for autoantibodies. Clinical evaluations of convalescent COVID-19 subjects, including minor salivary gland (MSG) biopsies, were collected. Lastly, monoclonal antibodies generated from single B cells of patients were interrogated for ACE2/spike inhibition and nuclear antigens.ResultsMice infected with the virus showed a decreased saliva flow rate, elevated antinuclear antibodies (ANAs) with anti-SSB/La, and lymphocyte infiltration in the lacrimal and salivary glands. Sera of COVID-19 patients showed an increase in ANA, anti-SSA/Ro52, and anti-SSB/La. The male patients showed elevated levels of anti-SSA/Ro52 compared to female patients, and female patients had more diverse ANA patterns. Minor salivary gland biopsies of convalescent COVID-19 subjects showed focal lymphocytic infiltrates in four of six subjects, and 2 of 6 subjects had focus scores >2. Lastly, we found monoclonal antibodies produced in recovered patients can both block ACE2/spike interaction and recognize nuclear antigens.ConclusionOverall, our study shows a direct association between SARS-CoV-2 and SjD. Hallmark features of SjD salivary glands were histologically indistinguishable from convalescent COVID-19 subjects. The results potentially implicate that SARS-CoV-2 could be an environmental trigger for SjD.Key MessagesWhat is already known about this subject?SAR-CoV-2 has a tropism for the salivary glands. However, whether the virus can induce clinical phenotypes of Sjögren’s disease is unknown.What does this study add?Mice infected with SAR-CoV-2 showed loss of secretory function, elevated autoantibodies, and lymphocyte infiltration in glands.COVID-19 patients showed an increase in autoantibodies. Monoclonal antibodies produced in recovered patients can block ACE2/spike interaction and recognize nuclear antigens.Minor salivary gland biopsies of some convalescent subjects showed focal lymphocytic infiltrates with focus scores.How might this impact on clinical practice or future developments?Our data provide strong evidence for the role of SARS-CoV-2 in inducing Sjögren’s disease-like phenotypes.Our work has implications for how patients will be diagnosed and treated effectively.
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- 2022
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408. TCR gene segment usage and HLA alleles that are associated with cancer survival rates also represent racial disparities
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Angelakakis, George, primary, Serraneau, Karisa S., additional, Barker, Vayda R., additional, Callahan, Blake M., additional, Tong, Wei Lue, additional, Zaman, Saif, additional, Huda, Taha I., additional, and Blanck, George, additional
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- 2022
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409. Clinical characteristics, microbiology and outcomes of a cohort of patients treated with ceftolozane/tazobactam in acute care inpatient facilities, Houston, Texas, USA
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Tran, Truc T, primary, Cabrera, Nicolo L, additional, Gonzales-Luna, Anne J, additional, Carlson, Travis J, additional, Alnezary, Faris, additional, Miller, William R, additional, Sakurai, Aki, additional, Dinh, An Q, additional, Rydell, Kirsten, additional, Rios, Rafael, additional, Diaz, Lorena, additional, Hanson, Blake M, additional, Munita, Jose M, additional, Pedroza, Claudia, additional, Shelburne, Samuel A, additional, Aitken, Samuel L, additional, Garey, Kevin W, additional, Dillon, Ryan, additional, Puzniak, Laura, additional, and Arias, Cesar A, additional
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- 2022
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410. Chemoprevention of oral cancer by topical application of black raspberries on high at-risk mucosa
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Warner, Blake M., Casto, Bruce C., Knobloch, Thomas J., Accurso, Brent T., and Weghorst, Christopher M.
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- 2014
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411. Phenolic furanochromene hydrazone derivatives: Synthesis, antioxidant activity, ferroptosis inhibition, DNA cleavage and DNA molecular docking studies
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Saylor, Jessica L., primary, Basile, Olivia N., additional, Li, Huifang, additional, Hunter, Lindsey M., additional, Weaver, Ashton, additional, Shellenberger, Blake M., additional, Ann Tom, Lou, additional, Ma, Hang, additional, Seeram, Navindra P., additional, and Henry, Geneive E., additional
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- 2022
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412. 152. Molecular Epidemiological Analysis of Relapsed Gram-negative Bloodstream Infection Isolates
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Parsons, Joshua B, primary, Bock, Andrew, additional, Hanson, Blake M, additional, Conlon, Brian P, additional, Arias, Cesar A, additional, Fowler, Vance G, additional, and Thaden, Joshua T, additional
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- 2022
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413. 149. Increasing Oxacillin Resistance of Staphylococcus lugdunensis Over Time, Utilizing Whole Genome Sequencing to Characterize Resistance
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Constance, Kristin, primary, Fukuta, Yuriko, additional, Penner, Elizabeth, additional, Lasco, Todd M, additional, Wanger, Audrey, additional, Hanson, Blake M, additional, and Nigo, Masayuki, additional
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- 2022
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414. 229. Molecular and Clinical Epidemiology of Carbapenemase-Producing E. coli Isolates from Different Global Regions (CRACKLE-2)
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Boutzoukas, Angelique E, primary, Boutzoukas, Angelique E, additional, Komarow, Lauren, additional, Chen, Liang, additional, Baum, Keri R, additional, Fowler, Vance G, additional, Hill, Carol, additional, Arias, Cesar A, additional, Hanson, Blake M, additional, Paterson, David, additional, Ge, Lizhao, additional, Ordonez, Karen M, additional, Salcedo, Soraya Salcedo Mendoza, additional, Kanj, Souha S, additional, Bonomo, Robert, additional, and van Duin, David, additional
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- 2022
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415. Cross-reactive SARS-CoV-2 epitope targeted across donors informs immunogen design
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Hauser, Blake M., primary, Feldman, Jared, additional, Sangesland, Maya, additional, Ronsard, Larance, additional, St. Denis, Kerri J., additional, Sheehan, Maegan L., additional, Cao, Yi, additional, Boucau, Julie, additional, Windsor, Ian W., additional, Cheng, Agnes H., additional, Vu, Mya L., additional, Cardoso, Marcella R., additional, Kannegieter, Ty, additional, Balazs, Alejandro B., additional, Lingwood, Daniel, additional, Garcia-Beltran, Wilfredo F., additional, and Schmidt, Aaron G., additional
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- 2022
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416. 128. Association of PBP4 Variants and β-lactam Susceptibility in Enterococcus faecalis
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Tran, Truc Cecilia, primary, Simar, Shelby R, additional, Egge, Stephanie L, additional, Atterstrom, Rachel, additional, Dinh, An, additional, Hanson, Blake M, additional, Contreras, German, additional, Zervos, Marcus, additional, Abbo, Lilian M, additional, Shimose, Luis, additional, Shelburne, Samuel A, additional, Arias, Cesar A, additional, and Miller, William R, additional
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- 2022
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417. 146. Heteroresistance to cefiderocol among Pseudomonas aeruginosa clinical isolates harboring changes in TonB-dependent receptor pathways and AmpC
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Egge, Stephanie L, primary, Rizvi, Samie A, additional, Simar, Shelby R, additional, Dinh, An, additional, Hanson, Blake M, additional, Arias, Cesar A, additional, Cecilia Tran, Truc, additional, and Miller, William R, additional
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- 2022
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418. Antibodies as drugs—a Keystone Symposia report
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Cable, Jennifer, primary, Saphire, Erica Ollmann, additional, Hayday, Adrian C., additional, Wiltshire, Timothy D., additional, Mousa, Jarrod J., additional, Humphreys, David P., additional, Breij, Esther C. W., additional, Bruhns, Pierre, additional, Broketa, Matteo, additional, Furuya, Genta, additional, Hauser, Blake M., additional, Mahévas, Matthieu, additional, Carfi, Andrea, additional, Cantaert, Tineke, additional, Kwong, Peter D., additional, Tripathi, Prabhanshu, additional, Davis, Jonathan H., additional, Brewis, Neil, additional, Keyt, Bruce A., additional, Fennemann, Felix L., additional, Dussupt, Vincent, additional, Sivasubramanian, Arvind, additional, Kim, Philip M., additional, Rawi, Reda, additional, Richardson, Eve, additional, Leventhal, Daniel, additional, Wolters, Rachael M., additional, Geuijen, Cecile A. W., additional, Sleeman, Matthew A., additional, Pengo, Niccolo, additional, and Donnellan, Francesca Rose, additional
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- 2022
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419. Correction of LAMP3-associated salivary gland hypofunction by aquaporin gene therapy
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Nakamura, Hiroyuki, primary, Tanaka, Tsutomu, additional, Zheng, Changyu, additional, Afione, Sandra A., additional, Warner, Blake M., additional, Noguchi, Masayuki, additional, Atsumi, Tatsuya, additional, and Chiorini, John A., additional
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- 2022
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420. Evidence of a Sjögren’s disease-like phenotype following COVID-19
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Shen, Yiran, primary, Voigt, Alexandria, additional, Goranova, Laura, additional, Abed, Mehdi, additional, Kleiner, David E., additional, Maldonado, Jose O., additional, Beach, Margaret, additional, Pelayo, Eileen, additional, Chiorini, John A., additional, Craft, William F., additional, Ostrov, David A., additional, Ramiya, Vijay, additional, Sukumaran, Sukesh, additional, Tuanyok, Apichai, additional, Warner, Blake M., additional, and Nguyen, Cuong Q., additional
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- 2022
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421. Substitutions near the HA receptor binding site explain the origin and major antigenic change of the B/Victoria and B/Yamagata lineages
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Rosu, Miruna E., primary, Lexmond, Pascal, additional, Bestebroer, Theo M., additional, Hauser, Blake M., additional, Smith, Derek J., additional, Herfst, Sander, additional, and Fouchier, Ron A. M., additional
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- 2022
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422. To the Editor: Using the Personal Statement to Address Application Deficiencies
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Graves, Andrew J., primary, Brown, Blake M., additional, and Oller, Kellee L., additional
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- 2022
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423. Antibodies from primary humoral responses modulate the recruitment of naive B cells during secondary responses
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Tas, Jeroen M.J., primary, Koo, Ja-Hyun, additional, Lin, Ying-Cing, additional, Xie, Zhenfei, additional, Steichen, Jon M., additional, Jackson, Abigail M., additional, Hauser, Blake M., additional, Wang, Xuesong, additional, Cottrell, Christopher A., additional, Torres, Jonathan L., additional, Warner, John E., additional, Kirsch, Kathrin H., additional, Weldon, Stephanie R., additional, Groschel, Bettina, additional, Nogal, Bartek, additional, Ozorowski, Gabriel, additional, Bangaru, Sandhya, additional, Phelps, Nicole, additional, Adachi, Yumiko, additional, Eskandarzadeh, Saman, additional, Kubitz, Michael, additional, Burton, Dennis R., additional, Lingwood, Daniel, additional, Schmidt, Aaron G., additional, Nair, Usha, additional, Ward, Andrew B., additional, Schief, William R., additional, and Batista, Facundo D., additional
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- 2022
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424. Is Ireland ready for tobacco endgame? A national survey of knowledge and attitudes to tobacco endgame
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Cosgrave, E, primary, Blake, M, additional, Murphy, E, additional, Sheridan, A, additional, Doyle, F, additional, and Kavanagh, P, additional
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- 2022
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425. Detection of livestock-associated methicillin-resistant Staphylococcus aureus among swine workers in Romania
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Huang, Eileen, Gurzau, Anca E., Hanson, Blake M., Kates, Ashley E., Smith, Tara C., Pettigrew, Melinda M., Spinu, Marina, and Rabinowitz, Peter M.
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- 2014
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426. 2.10 Pharmacotherapy Regimens and Predictors of Antipsychotic Use Among Youth Treated for Depression or Suicidality
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Blader, Joseph C., Ayvaci, Emine, Emslie, Graham J., Minhajuddin, Abu, Stone, Laura, DeFilippis, Melissa S., Storch, Eric A., Zhyrov, Vadym, Upshaw, Blake M., Jeevarajan, John R., Wakefield, Sarah Mallard, and Trivedi, Madhukar H.
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- 2024
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427. A Reusable Model for Data-Centric Web Services
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Saleh, Iman, Kulczycki, Gregory, Blake, M. Brian, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Edwards, Stephen H., editor, and Kulczycki, Gregory, editor
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- 2009
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428. Looking shifty but telling the truth : the effect of witness demeanour on mock jurors' perceptions.
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McKimmie, Blake M, Masser, Barbara M, and Bongiorno, Renata
- Published
- 2014
429. Tibial Plateau Fracture Following Anterior Cruciate Ligament Reconstruction with a Bone-Patellar Tendon-Bone Allograft: A Case Report
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Bodendorfer, Blake M., Kotler, Joshua A., Thornley, Caitlin J., and Postma, William F.
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- 2018
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430. Cytoskeleton and ECM tumor mutant peptides: Increased protease sensitivities and potential consequences for the HLA class I mutant epitope reservoir
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Callahan, Blake M., Patel, Jay S., Fawcett, Timothy J., and Blanck, George
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- 2018
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431. A quilting subcutaneous suture pattern to reduce seroma formation and pain 24 hours after midline celiotomy in dogs: A randomized controlled trial
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Travis, Blake M., Hayes, Galina M., Vissio, K., Harvey, H. J., Flanders, James A., and Sumner, Julia P.
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- 2018
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432. Objective and Subjective Comprehension of Jury Instructions in Criminal Trials
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McKimmie, Blake M., Antrobus, Emma, and Baguley, Chantelle
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- 2014
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433. Guided by the rape schema: the influence of event order on how jurors evaluate the victim’s testimony in cases of rape
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Blake M. McKimmie, Harrison D. H. Lee, Barbara M. Masser, and Jason M. Tangen
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Order (business) ,Schema (psychology) ,Event (relativity) ,media_common.quotation_subject ,Stereotype ,Psychology ,Law ,Social psychology ,General Psychology ,Pathology and Forensic Medicine ,media_common - Abstract
Jurors are less likely to believe a victim of rape when the events she describes are inconsistent with the rape stereotype and appear more consistent with what occurs in consensual sex. This resear...
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- 2021
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434. Field succession studies and casework can help to identify forensically useful Diptera
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James F. Wallman, Philip S. Barton, and Blake M. Dawson
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Forensic Entomology ,Male ,Oviposition ,Ecology (disciplines) ,Ecological succession ,01 natural sciences ,Calliphora ,Pathology and Forensic Medicine ,03 medical and health sciences ,0302 clinical medicine ,Abundance (ecology) ,Cadaver ,Genetics ,medicine ,Animals ,Humans ,Calliphora augur ,Carrion ,030216 legal & forensic medicine ,Aged, 80 and over ,biology ,Ecology ,Diptera ,fungi ,010401 analytical chemistry ,Australia ,Species diversity ,Biodiversity ,Feeding Behavior ,Middle Aged ,Seasonality ,biology.organism_classification ,medicine.disease ,0104 chemical sciences ,Postmortem Changes ,Female ,Seasons - Abstract
Fly development rates, and to a lesser extent succession data, can be used to provide an estimate of a minimum postmortem interval (mPMI). Yet, these data are most useful when a full account of species' ecology, seasonality, and distribution is known. We conducted succession experiments on human cadavers over different seasons near Sydney, Australia, to document forensically useful information, including the pre-appearance interval for carrion flies. We also compiled a detailed record of flies identified in casework collected in 156 cases distributed across New South Wales, Australia. We then compared the occurrence of fly species from both field and casework datasets to identify any consistencies or gaps to determine how useful species might be for forensic investigations. In the field experiments, we found differences in species diversity and abundance between seasons, as well as yearly variation between two winter seasons. Most fly species we recorded ovipositing showed a 2- or 3-day delay between adult arrival and oviposition in summer, with a longer delay in winter. Species that were previously encountered in casework, such as Calliphora augur (Fabricius, 1775) and Calliphora ochracea Schiner, 1868, were confirmed as forensically useful, with their colonization behavior and seasonal preferences documented here. Although not encountered in casework, we confirmed Hemipyrellia fergusoni Patton, 1925 as a primary colonizer of human cadavers. Our study emphasizes the need to link field and casework data for a complete understanding of all aspects of a carrion fly's ecology to assist forensic investigators in mPMI estimations.
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- 2021
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435. Influence of Fatty Infiltration on Hip Abductor Repair Outcomes: A Systematic Review and Meta-analysis
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Shane J. Nho, Austin M. Looney, Jorge Chahla, Stiles T. Donaldson, Blake M. Bodendorfer, and Robert B. Browning
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medicine.medical_specialty ,business.industry ,Pain ,Endoscopy ,Physical Therapy, Sports Therapy and Rehabilitation ,Greater trochanteric pain syndrome ,medicine.disease ,Surgery ,Tendon Injuries ,Meta-analysis ,Buttocks ,Humans ,Medicine ,Tears ,Orthopedics and Sports Medicine ,Fatty infiltration ,Arthroplasty, Replacement ,Hip abductor ,business - Abstract
Background: Increasing evidence supports surgical intervention for hip abductor tears; however, the influence of fatty infiltration (FI) on outcomes after repair remains uncertain and has been addressed only in small case series. Purpose: To clarify the relationship between FI and surgical outcomes for hip abductor tears. Study Design: Meta-analysis; Level of evidence, 4. Methods: A systematic review and meta-analysis was conducted according to PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines. FI severity was assessed by Goutallier-Fuchs (G-F) grade. The relationship between FI and improvement in Harris Hip Score (HHS)/modified Harris Hip Score (mHHS) and visual analog scale (VAS) score for pain was examined with mixed-effects metaregression. Outcomes with open and endoscopic techniques were also compared. Results: A total of 4 studies (206 repairs in 201 patients) were eligible. High-grade FI was associated with significantly less improvement in HHS/mHHS than both no FI (6.761 less; 95% CI, 3.983-11.570; P = .002) and low-grade FI (7.776 less; 95% CI, 2.460-11.062; P < .001) but did not significantly influence VAS score ( P > .05). Controlling for FI severity, we found no significant difference in HHS/mHHS improvement between open versus endoscopic repair ( P > .05 at each level), but open repair resulted in significantly greater improvement in VAS score for every G-F grade (all P < .005). Conclusion: Surgical intervention for symptomatic hip abductor tendon tears improved outcomes as reflected by change in HHS/mHHS; however, the presence of high-grade FI resulted in less improvement. FI severity did not influence VAS scores for pain. Although no differences were found between open and endoscopic repairs in terms of FI-adjusted improvement in HHS/mHHS, open repairs resulted in significantly greater pain relief at each FI level.
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- 2021
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436. The Natural Course of Recovery After Hip Arthroscopy for Femoroacetabular Impingement According to the International Hip Outcome Tool–12 and Hip Outcome Score Sports Subscale
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Shane J. Nho, Blake M. Bodendorfer, Ian M. Clapp, Jorge Chahla, Kevin C. Parvaresh, Steven F. DeFroda, Thomas D. Alter, and Philip Malloy
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Male ,medicine.medical_specialty ,Natural course ,Femoroacetabular Impingement Syndrome ,business.industry ,Physical Therapy, Sports Therapy and Rehabilitation ,medicine.disease ,Arthroscopy ,Treatment Outcome ,Case-Control Studies ,Activities of Daily Living ,Femoracetabular Impingement ,Quality of Life ,Physical therapy ,medicine ,Humans ,Hip Joint ,Orthopedics and Sports Medicine ,Patient Reported Outcome Measures ,Hip arthroscopy ,business ,Femoroacetabular impingement ,Aged ,Sports - Abstract
Background: A paucity of literature exists regarding trajectories of functional and sports-specific recovery after hip arthroscopy for femoroacetabular impingement syndrome (FAIS). Purpose: To determine if subgroups of patients exist based on the recovery trajectory of patient-reported outcomes (PROs) after hip arthroscopy for FAIS in the short-term period and to determine clinical predictors for these subgroups of patients. Study Design: Case-control study; Level of evidence, 3. Methods: A prospectively maintained repository was queried for patients who had undergone primary hip arthroscopy for the treatment of FAIS between January 2012 and May 2018. Patients who completed the preoperative, 1-year, and 2-year International Hip Outcome Tool–12 (iHOT-12) or the Hip Outcome Score Sports Subscale (HOS-SS) were included. The latent class growth analysis (LCGA) and growth mixture models (GMMs) were used to identify subgroups of patients based on trajectories of recovery for the iHOT-12 and the HOS-SS utilizing preoperative, 1-year, and 2-year follow-ups. LCGA and GMM models using 1 to 6 classes for each PRO were performed, and the best-fit model for each PRO was selected. After final model selection, a multivariable multinomial logistic regression was performed, with the largest class being the reference group to determine clinical predictors of subgroup membership. Results: A total of 443 and 556 patients were included in the iHOT-12 and HOS-SS analyses, respectively. For the iHOT-12, we identified the following 3 subgroups: early progressors (70%), late regressors (22.3%), and late progressors (7.7%). Predictors of late regression were workers’ compensation status, psychiatric history, preoperative chronic pain, and lower preoperative iHOT-12 scores; and late progressors were less likely to participate in sports. For the HOS-SS, we identified the following 4 subgroups: early progressors (47.7%), late regressors (17.4%), late progressors (6.8%), and steady progressors (28.1%). Predictors of less favorable recovery trajectories (late regressors and late progessors) were older age, male sex, back pain, psychiatric history, preoperative chronic pain, greater alpha angle, and lower preoperative HOS-SS scores. Conclusion: Using the growth mixture modeling, 3 natural courses of health-related quality of life (early progression, late regression, and late progression) and 4 natural courses of recovery of athletic function (steady progression, late regression, late progression, and early progression) were identified. Preoperative psychiatric conditions, chronic pain, workers’ compensation status, and lower iHOT-12 scores were predictive of less than favorable trajectories of recovery according to the iHOT-12, and male sex, older age, back pain, preoperative narcotic use, and lower preoperative HOS-SS were predictors of less favorable recovery trajectories according to the HOS-SS.
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- 2021
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437. The 'oral' history of COVID‐19: Primary infection, salivary transmission, and post‐acute implications
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Julie T. Marchesan, Blake M. Warner, and Kevin M. Byrd
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Mouth ,Saliva ,Coronavirus disease 2019 (COVID-19) ,SARS-CoV-2 ,Transmission (medicine) ,business.industry ,viruses ,Mouth Mucosa ,COVID-19 ,medicine.disease_cause ,medicine.disease ,Asymptomatic ,Virus ,body regions ,stomatognathic diseases ,Oral history ,Immunology ,Oral and maxillofacial pathology ,medicine ,Humans ,Periodontics ,medicine.symptom ,business ,Coronavirus - Abstract
Severe acute respiratorysyndrome coronavirus 2 (SARS-CoV-2), the causative agent of COVID-19, has led to more than 3.25 million recorded deaths worldwide as of May 2021. COVID-19 is known to be clinically heterogeneous, and whether the reported oral signs and symptoms in COVID-19 are related to the direct infection of oral tissues has remained unknown. Here, we review and summarize the evidence for the primary infection of the glands, oral mucosae, and saliva by SARS-CoV-2. Not only were the entry factors for SARS-CoV-2 found in all oral tissues, but these were also sites of SARS-CoV-2 infection and replication. Furthermore, saliva from asymptomatic individuals contained free virus and SARS-CoV-2-infected oral epithelial cells, both of which were found to transmit the virus. Collectively, these studies support an active role of the oral cavity in the spread and transmission of SARS-CoV-2 infection. In addition to maintaining the appropriate use of personal protective equipment and regimens to limit microbial spread via aerosol or droplet generation, the dental community will also be involved in co-managing COVID-19 "long haulers"-now termed Post-Acute COVID-19 Syndrome. Consequently, we propose that, as SARS-CoV-2 continues to spread and as new clinical challenges related to COVID-19 are documented, oral symptoms should be included in diagnostic and prognostic classifications as well as plans for multidisciplinary care.
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- 2021
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438. The Use of Electronic Health Record Tools to Improve Evidence-Based Treatment of Adolescent Depression in Primary Care
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Harlan McCaffery, Teryn Bruni, Abigail Caserta, Kelly A. Orringer, Joyce Y. Lee, Joanna Quigley, Alexandros Maragakis, Leah LaLonde, Shawna N. Smith, Blake M. Lancaster, and Amy M. Kilbourne
- Subjects
medicine.medical_specialty ,Evidence-based practice ,Adolescent ,Health information technology ,education ,Psychological intervention ,Documentation ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,medicine ,Electronic Health Records ,Humans ,030212 general & internal medicine ,Depression (differential diagnoses) ,Retrospective Studies ,Protocol (science) ,Primary Health Care ,Depression ,business.industry ,Behavioral activation ,Patient Health Questionnaire ,Family medicine ,Pediatrics, Perinatology and Child Health ,business - Abstract
Objective The aim of the current study was to evaluate primary care pediatrician (PCP) adoption of an electronic health record (EHR) documentation tool and their delivery of a behavioral activation (BA) intervention within their routine practice with adolescents who screened positive for depression. Methods We used the RE-AIM framework to describe PCP adoption and implementation of EHR documentation tools and brief evidence-based protocols. Utilization was assessed using a customized toolbar (ie, actions toolbar) via retrospective chart review. A pre-post design was used to measure changes in PCP-reported knowledge, comfort, and feasibility managing depression before and after they were trained. A mixed-effects logistic regression model was used to analyze associations of resource utilization with depression severity. Results PCPs used the actions toolbar to document responses to elevated Patient Health Questionnaire (PHQ-9) scores for 29.80% of encounters. The PCPs utilized the BA protocol for 10.5% of encounters with elevated PHQ-9 scores. Higher depression severity categories were associated with significantly higher odds of utilization relative to mild severity. The training was rated highly acceptable and PCPs reported significant post-training increases in comfort and feasibility. Conclusion This is the first study of its kind to implement and evaluate PCP utilization of an EHR documentation tool aimed to improve delivery of an evidence-based intervention for adolescent depression. Teaching PCPs to implement brief interventions has potential to increase access to evidence-based care; however, large-scale practice change requires an effective implementation strategy that does not increase provider burden and is fully integrated into physician documentation and workflow.
- Published
- 2021
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439. Machine learning to detect marine animals in UAV imagery: effect of morphology, spacing, behaviour and habitat
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Kostas A. Katselidis, Johanna J. Geeson, Gail Schofield, John P. Y. Arnould, Daniel Ierodiaconou, Antoine M. Dujon, and Blake M. Allan
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demography ,Technology ,Aerial survey ,Ecology ,business.industry ,Computer science ,Ecology (disciplines) ,Deep learning ,deep learning ,Morphology (biology) ,satellite imagery ,artificial intelligence ,Habitat ,Remote sensing (archaeology) ,aerial surveys ,movement ecology ,Satellite imagery ,Artificial intelligence ,Computers in Earth Sciences ,business ,Ecology, Evolution, Behavior and Systematics ,QH540-549.5 ,Nature and Landscape Conservation ,Remote sensing - Abstract
Machine learning algorithms are being increasingly used to process large volumes of wildlife imagery data from unmanned aerial vehicles (UAVs); however, suitable algorithms to monitor multiple species are required to enhance efficiency. Here, we developed a machine learning algorithm using a low‐cost computer. We trained a convolutional neural network and tested its performance in: (1) distinguishing focal organisms of three marine taxa (Australian fur seals, loggerhead sea turtles and Australasian gannets; body size ranges: 0.8–2.5 m, 0.6–1.0 m, and 0.8–0.9 m, respectively); and (2) simultaneously delineating the fine‐scale movement trajectories of multiple sea turtles at a fish cleaning station. For all species, the algorithm performed best at detecting individuals of similar body length, displaying consistent behaviour or occupying uniform habitat (proportion of individuals detected, or recall of 0.94, 0.79 and 0.75 for gannets, seals and turtles, respectively). For gannets, performance was impacted by spacing (huddling pairs with offspring) and behaviour (resting vs. flying shapes, overall precision: 0.74). For seals, accuracy was impacted by morphology (sexual dimorphism and pups), spacing (huddling and creches) and habitat complexity (seal sized boulders) (overall precision: 0.27). For sea turtles, performance was impacted by habitat complexity, position in water column, spacing, behaviour (interacting individuals) and turbidity (overall precision: 0.24); body size variation had no impact. For sea turtle trajectories, locations were estimated with a relative positioning error of
- Published
- 2021
440. Multicenter Outcomes After Revision Hip Arthroscopy: Comparative Analysis of 2-Year Outcomes After Labral Repair Versus Labral Reconstruction
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Shane J. Nho, Andrew B. Wolff, Thomas D. Alter, Benjamin R. Kivlan, John J Cristoforetti, Dean K. Matsuda, Dominic S. Carreira, Blake M. Bodendorfer, and John P. Salvo
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Adult ,musculoskeletal diseases ,medicine.medical_specialty ,Physical Therapy, Sports Therapy and Rehabilitation ,Cohort Studies ,Arthroscopy ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Activities of Daily Living ,Femoracetabular Impingement ,medicine ,Humans ,Orthopedics and Sports Medicine ,In patient ,Patient Reported Outcome Measures ,Retrospective Studies ,030222 orthopedics ,Labrum ,Femoroacetabular Impingement Syndrome ,business.industry ,030229 sport sciences ,Surgery ,Treatment Outcome ,Hip Joint ,Hip arthroscopy ,business ,Follow-Up Studies - Abstract
Background: There is a paucity of literature evaluating patient outcomes in patients undergoing revision labral repair and labral reconstruction. Purpose: To compare outcomes in patients undergoing revision hip arthroscopy for treatment of labral tears by labral repair or labral reconstruction. Study Design: Cohort study; Level of evidence, 3. Methods: A retrospective review of a prospectively maintained multicenter database of patients undergoing hip arthroscopy was performed. An a priori power analysis determined that a total of 62 patients were required. Patients undergoing revision hip arthroscopy for labral tears with completed 2-year outcome scores were included. Patients undergoing primary hip arthroscopy, labral debridement, concomitant gluteal repair, and patients with hip dysplasia (lateral center-edge angle Results: A total of 40 patients underwent revision labral repair and 55 patients underwent labral reconstruction. Patients undergoing revision labral repair were younger (mean age, 30.0 ± 10.7 years vs 34.4 ± 9.7 years; P = .048), had lower rates of labral degeneration (25.0% vs 62.7%; P = .004), and had lower rates of severe complexity of tears (21.1% vs 66.0%; P = .003). However, the labral repair group had higher rates of articular cartilage damage (62.5% vs 33.3%; P = .009). There were no differences in any preoperative or 2-year postoperative PROs. Furthermore, no differences were seen in achievement of MCID or PASS in any PRO. Conclusion: In this multicenter study on revision hip arthroscopy, patients undergoing revision labral repair were younger and had better labral characteristics but greater cartilage damage compared with patients undergoing labral reconstructions. Despite these differences, patients who underwent labral repair reported similar outcomes to those undergoing labral reconstruction.
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- 2021
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441. Adult sports-related traumatic spinal injuries: do different activities predispose to certain injuries?
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Ayaz Khawaja, Mark M. Zaki, Michael W. Groff, John H. Chi, Hasan A. Zaidi, Saksham Gupta, Samantha E Hoffman, Timothy R. Smith, Anne A. Roffler, David J. Cote, Yi Lu, and Blake M. Hauser
- Subjects
medicine.medical_specialty ,business.industry ,Physical therapy ,Medicine ,General Medicine ,business ,Article - Abstract
OBJECTIVE Sports injuries are known to present a high risk of spinal trauma. The authors hypothesized that different sports predispose participants to different injuries and injury severities. METHODS The authors conducted a retrospective cohort analysis of adult patients who experienced a sports-related traumatic spinal injury (TSI), including spinal fractures and spinal cord injuries (SCIs), encoded within the National Trauma Data Bank from 2011 through 2014. Multiple imputation was used for missing data, and multivariable linear and logistic regression models were estimated. RESULTS The authors included 12,031 cases of TSI, which represented 15% of all sports-related trauma. The majority of patients with TSI were male (82%), and the median age was 48 years (interquartile range 32–57 years). The most frequent mechanisms of injury in this database were cycling injuries (81%), skiing and snowboarding accidents (12%), aquatic sports injuries (3%), and contact sports (3%). Spinal surgery was required during initial hospitalization for 9.1% of patients with TSI. Compared to non-TSI sports-related trauma, TSIs were associated with an average 2.3-day increase in length of stay (95% CI 2.1–2.4; p < 0.001) and discharge to or with rehabilitative services (adjusted OR 2.6, 95% CI 2.4–2.7; p < 0.001). Among sports injuries, TSIs were the cause of discharge to or with rehabilitative services in 32% of cases. SCI was present in 15% of cases with TSI. Within sports-related TSIs, the rate of SCI was 13% for cycling injuries compared to 41% and 49% for contact sports and aquatic sports injuries, respectively. Patients experiencing SCI had a longer length of stay (7.0 days longer; 95% CI 6.7–7.3) and a higher likelihood of adverse discharge disposition (adjusted OR 9.69, 95% CI 8.72–10.77) compared to patients with TSI but without SCI. CONCLUSIONS Of patients with sports-related trauma discharged to rehabilitation, one-third had TSIs. Cycling injuries were the most common cause, suggesting that policies to make cycling safer may reduce TSI.
- Published
- 2021
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442. Surgical Technique for Obligate Flexion Patellar Dislocation: Medial Patellofemoral Ligament Reconstruction, Distal Femoral Osteotomy, Quadricepsplasty, and Lateral Retinacular Reconstruction with Dermal Allograft
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Hailey P. Huddleston, Blake M. Bodendorfer, and Adam B. Yanke
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musculoskeletal diseases ,medicine.medical_specialty ,biology ,business.industry ,Medial patellofemoral ligament ,musculoskeletal system ,biology.organism_classification ,Surgery ,Valgus ,medicine.anatomical_structure ,Technical Note ,medicine ,Orthopedics and Sports Medicine ,business ,human activities ,Distal femoral osteotomy ,Patellar maltracking - Abstract
Lateral patellar dislocation is a relatively common pathology that can be surgically treated with a medial patellofemoral ligament reconstruction. In rare occurrences patients can present with patellar maltracking that results in obligate patellar instability in flexion but central tracking in extension. This presentation can be much more complicated to treat surgically and may require a combination of multiple patellofemoral procedures. In this technique we describe a four-pronged treatment approach for improving patellar tracking in a patient with obligate flexion patellar dislocation and valgus malalignment including VY quadricepsplasty, distal femoral osteotomy, medial patellofemoral ligament reconstruction, and lateral retinacular and capsular reconstruction with a dermal allograft., Technique Video Video 1 Video demonstrating a step-by-step approach of a 4-pronged technique for treating obligate flexion patellar dislocation in a patient with valgus malalignment. The 4-pronged treatment approach includes a VY quadricepsplasty, distal femoral osteotomy, medial patellofemoral ligament reconstruction, and lateral retinacular and capsular reconstruction with a dermal allograft.
- Published
- 2021
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443. Comparing Parent-Child Interactions in the Clinic and at Home: An Exploration of the Validity of Clinical Behavior Observations Using Sequential Analysis
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Shriver, Mark D., Frerichs, Lynae J., Williams, Melissa, and Lancaster, Blake M.
- Abstract
Direct observation is often considered the "gold standard" for assessing the function, frequency, and intensity of problem behavior. Currently, the literature investigating the construct validity of direct observation conducted in the clinic setting reveals conflicting results. Previous studies on the construct validity of clinic-based observations of parent and child interaction have focused on correlating behavior rates across clinic and home settings. These studies provide some preliminary data on how accurately in-clinic observations reflect the rates of behavior in the home setting; however, they provide little information regarding the interaction patterns between the parent and the child. The current study explores a method of assessing construct validity by comparing parent-child interactions in the clinic with parent-child interactions in the home. Results of this investigation suggest parents and children may exhibit similar rates of behavior in the clinic and home during structured activities and similar types of interactions during those activities. (Contains 5 tables and 8 figures.)
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- 2013
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444. Stereotypes in the Courtroom
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McKimmie, Blake M, primary
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- 2017
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445. C-PLAD-SM: Extending Component Requirements with Use Cases and State Machines
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Gary, Kevin A., primary and Blake, M. B., additional
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- 2017
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446. Cognitive Dissonance Theory
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McKimmie, Blake M., primary
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- 2017
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447. Spatiotemporal expression of RNA-seq identified proteins at the electrode interface.
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Thompson, Cort H., Evans, Blake M., Zhao, Dorothy X., and Purcell, Erin K.
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GENE expression ,GLIAL fibrillary acidic protein ,NEURAL stem cells ,MYELIN basic protein ,BIOELECTRONICS ,RNA sequencing ,ARTIFICIAL implants - Abstract
Implantation of electrodes in the brain can be used to record from or stimulate neural tissues to treat neurological disease and injury. However, the tissue response to implanted devices can limit their functional longevity. Recent RNA-seq datasets identify hundreds of genes associated with gliosis, neuronal function, myelination, and cellular metabolism that are spatiotemporally expressed in neural tissues following the insertion of microelectrodes. To validate mRNA as a predictor of protein expression, this study evaluates a sub-set of RNA-seq identified proteins (RSIP) at 24-hours, 1-week, and 6-weeks post-implantation using quantitative immunofluorescence methods. This study found that expression of RSIPs associated with glial activation (Glial fibrillary acidic protein (GFAP), Polypyrimidine tract binding protein-1 (Ptbp1)), neuronal structure (Neurofilament heavy chain (Nefh), Proteolipid protein-1 (Plp1), Myelin Basic Protein (MBP)), and iron metabolism (Transferrin (TF), Ferritin heavy chain-1 (Fth1)) reinforce transcriptional data. This study also provides additional context to the cellular distribution of RSIPs using a MATLAB-based approach to quantify immunofluorescence intensity within specific cell types. Ptbp1, TF, and Fth1 were found to be spatiotemporally distributed within neurons, astrocytes, microglia, and oligodendrocytes at the device interface relative to distal and contralateral tissues. The altered distribution of RSIPs relative to distal tissue is largely localized within 100µm of the device injury, which approaches the functional recording range of implanted electrodes. This study provides evidence that RNA-sequencing can be used to predict protein-level changes in cortical tissues and that RSIPs can be further investigated to identify new biomarkers of the tissue response that influence signal quality. Microelectrode arrays implanted into the brain are useful tools that can be used to study neuroscience and to treat pathological conditions in a clinical setting. The tissue response to these devices, however, can severely limit their functional longevity. Transcriptomics has deepened the understandings of the tissue response by revealing numerous genes which are differentially expressed following device insertion. This manuscript provides validation for the use of transcriptomics to characterize the tissue response by evaluating a subset of known differentially expressed genes at the protein level around implanted electrodes over time. In additional to validating mRNA-to-protein relationships at the device interface, this study has identified emerging trends in the spatiotemporal distribution of proteins involved with glial activation, neuronal remodeling, and essential iron binding proteins around implanted silicon devices. This study additionally provides a new MATLAB based methodology to quantify protein distribution within discrete cell types at the device interface which may be used as biomarkers for further study or therapeutic intervention in the future. [Display omitted] [ABSTRACT FROM AUTHOR]
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- 2023
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448. Using Naming Tendencies to Syntactically Link Web Service Messages
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Nowlan, Michael F., Kahan, Daniel R., Blake, M. Brian, Hutchison, David, editor, Kanade, Takeo, editor, Kittler, Josef, editor, Kleinberg, Jon M., editor, Mattern, Friedemann, editor, Mitchell, John C., editor, Naor, Moni, editor, Nierstrasz, Oscar, editor, Pandu Rangan, C., editor, Steffen, Bernhard, editor, Sudan, Madhu, editor, Terzopoulos, Demetri, editor, Tygar, Dough, editor, Vardi, Moshe Y., editor, Weikum, Gerhard, editor, Lee, Juhnyoung, editor, Shim, Junho, editor, Lee, Sang-goo, editor, Bussler, Christoph, editor, and Shim, Simon, editor
- Published
- 2006
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449. Diagnostic information produces better calibrated judgments about forensic comparison evidence than likelihood ratios
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Gianni Ribeiro, Blake M McKimmie, and Jason Marcus Tangen
- Abstract
Forensic expert testimony is slowly starting to reflect the uncertain nature of forensic science, but the way experts should express the uncertainty of their decisions is under debate. Here we compare the likelihood model approach to a diagnostic approach — which provides information about performance and error rates — to determine which produces a more calibrated understanding and evaluation of the evidence. In Experiment 1 (N = 738), participants were more sensitive to differences in evidence strength when the evidence was expressed as diagnostic information than as a likelihood ratio, as predicted. In Experiment 2 (N = 499), however, when provided with both diagnostic information and a likelihood ratio, participants tended to discount the presence of the likelihood ratio in favour of the diagnostic information, which we did not predict. Together, these results suggest that providing fact-finders with diagnostic information might aid their understanding and evaluation of forensic evidence.
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- 2022
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450. COVID-19 and Lung Cavitation: A Clue to Pathogenesis?
- Author
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Tanner W Norris, Blake M. Snyder, Patryk Purta, Ryan P. Spilman, and Vanessa J. Craig
- Subjects
Case Report ,Earth-Surface Processes - Abstract
Description Lung cavitation as a complication of COVID-19 is rare. A 56-year-old male presented with lung cavitation, small volume hemoptysis, and violaceous discoloration of the right great toe, 5 weeks after diagnosis with COVID-19 pneumonia. The digital changes were consistent with previously described microvascular changes called "COVID toe." CT angiography of the chest was negative for pulmonary embolism but showed a 2.5 x 3.1 x 2.2 cm cavitation within the right lung. Extensive evaluation for commonly implicated infectious and autoimmune causes was negative. We concluded that the cavitary lung lesions were likely a complication of COVID-19 pneumonia and may implicate microangiopathy as an important component of pathogenesis. This case highlights a rare complication of COVID-19 of which clinicians should be aware.
- Published
- 2022
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