61,279 results on '"A Bowden"'
Search Results
402. Sars-Cov-2 Infection in People with Type 1 Diabetes and Hospital Admission: An Analysis of Risk Factors for England
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Heald, Adrian H., Jenkins, David A., Williams, Richard, Mudaliar, Rajshekhar N., Khan, Amber, Syed, Akheel, Sattar, Naveed, Khunti, Kamlesh, Naseem, Asma, Bowden-Davies, Kelly A., Gibson, J. Martin, and Ollier, William
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- 2023
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403. Equitable hiring strategies towards a diversified faculty
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Cosgriff-Hernandez, Elizabeth M., Aguado, Brian A., Akpa, Belinda, Fleming, Gabriella Coloyan, Moore, Erika, Porras, Ana Maria, Boyle, Patrick M., Chan, Deva D., Chesler, Naomi, Christman, Karen L., Desai, Tejal A., Harley, Brendan A. C., Hudalla, Gregory A., Killian, Megan L., Maisel, Katharina, Maitland, Kristen C., Peyton, Shelly R., Pruitt, Beth L., Stabenfeldt, Sarah E., Stevens, Kelly R., and Bowden, Audrey K.
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- 2023
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404. Machine learning identifies multi-parametric functional PET/MR imaging cluster to predict radiation resistance in preclinical head and neck cancer models
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Boeke, Simon, Winter, René M., Leibfarth, Sara, Krueger, Marcel A., Bowden, Gregory, Cotton, Jonathan, Pichler, Bernd J., Zips, Daniel, and Thorwarth, Daniela
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- 2023
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405. Blockchain Technology for Supply Chains operating in emerging markets: an empirical examination of technology-organization-environment (TOE) framework
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Chittipaka, Venkataiah, Kumar, Satish, Sivarajah, Uthayasankar, Bowden, Jana Lay-Hwa, and Baral, Manish Mohan
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- 2023
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406. SARS-CoV-2-specific immune responses and clinical outcomes after COVID-19 vaccination in patients with immune-suppressive disease
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Barnes, Eleanor, Goodyear, Carl S., Willicombe, Michelle, Gaskell, Charlotte, Siebert, Stefan, I de Silva, Thushan, Murray, Sam M., Rea, Daniel, Snowden, John A., Carroll, Miles, Pirrie, Sarah, Bowden, Sarah J., Dunachie, Susanna J., Richter, Alex, Lim, Zixiang, Satsangi, Jack, Cook, Gordon, Pope, Ann, Hughes, Ana, Harrison, Molly, Lim, Sean H., Miller, Paul, Klenerman, Paul, Basu, Neil, Gilmour, Ashley, Irwin, Sophie, Meacham, Georgina, Marjot, Thomas, Dimitriadis, Stavros, Kelleher, Peter, Prendecki, Maria, Clarke, Candice, Mortimer, Paige, McIntyre, Stacey, Selby, Rachael, Meardon, Naomi, Nguyen, Dung, Tipton, Tom, Longet, Stephanie, Laidlaw, Stephen, Orchard, Kim, Ireland, Georgina, Thomas, David, Kearns, Pamela, Kirkham, Amanda, and McInnes, Iain B.
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- 2023
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407. Mechanistic basis for potent neutralization of Sin Nombre hantavirus by a human monoclonal antibody
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Stass, Robert, Engdahl, Taylor B., Chapman, Nathaniel S., Wolters, Rachael M., Handal, Laura S., Diaz, Summer M., Crowe, Jr, James E., and Bowden, Thomas A.
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- 2023
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408. Magnetic Resonance Liver Iron Concentration Can Guide Venesection Decision-Making in Hyperferritinemia
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Bhuva, Meha, Patterson, Ilse, Godfrey, Edmund M., Bowden, David J., and Griffiths, William J. H.
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- 2023
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409. The Prevalence of Problem Gambling and Gambling Disorder Among Homeless People: A Systematic Review And Meta-Analysis
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Deutscher, Karl, Gutwinski, Stefan, Bermpohl, Felix, Bowden-Jones, Henrietta, Fazel, Seena, and Schreiter, Stefanie
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- 2023
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410. Spatiotemporally resolved emissions and concentrations of styrene, benzene, toluene, ethylbenzene, and xylenes (SBTEX) in the US Gulf region
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C.-T. Wang, B. H. Baek, W. Vizuete, L. S. Engel, J. Xing, J. Green, M. Serre, R. Strott, J. Bowden, and J.-H. Woo
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
Styrene, benzene, toluene, ethylbenzene, and xylenes (SBTEX) are established neurotoxicants. SBTEX contains hazardous air pollutants (HAPs) that are released from the petrochemical industry, combustion process, transport emission, and solvent usage sources. Although several SBTEX toxic assessment studies have been conducted, they have mainly relied on ambient measurements to estimate exposure and limit their scope to specific locations and observational periods. To overcome these spatiotemporal limitations, an air quality modeling system over the US Gulf region was created, predicting the spatially and temporally enhanced SBTEX modeling concentrations from May to September 2012. Due to the incompleteness of SBTEX in the official US Environmental Protection Agency (EPA) National Emission Inventory (NEI), the Hazardous Air Pollutions Imputation (HAPI) program was used to identify and estimate the missing HAP emissions. The improved emission data were processed to generate the chemically speciated hourly gridded emission inputs for the Comprehensive Air Quality Model with Extensions (CAMx) chemical transport model to simulate the SBTEX concentrations over the Gulf modeling region. SBTEX pollutants were modeled using the Reactive Tracer feature in CAMx that accounts for their chemical and physical processes in the atmosphere. The data show that the major SBTEX emissions in this region are contributed by mobile emissions (45 %), wildfire (30 %), and industry (26 %). Most SBTEX emissions are emitted during daytime hours (local time 14:00–17:00), and the emission rate in the model domain is about 20–40 t h−1, which is about 4 times higher than that in the nighttime (local time 24:00–04:00, about 4–10 t h−1). High concentrations of SBTEX (above 1 ppb) occurred near the cities close to the I-10 interstate highway (Houston, Beaumont, Lake Charles, Lafayette, Baton Rouge, New Orleans, and Mobile) and other metropolitan cities (Shreveport and Dallas). High styrene concentrations were co-located with industrial sources, which contribute the most to the styrene emissions. The HAPI program successfully estimated missing emissions of styrene from the chemical industry. The change increased total styrene emissions by 22 %, resulting in maximum ambient concentrations increasing from 0.035 to 1.75 ppb across the model domain. The predicted SBTEX concentrations with imputed emissions present good agreement with observational data, with a correlation coefficient (R) of 0.75 (0.46 to 0.77 for individual SBTEX species) and a normalized mean bias (NMB) of −5.6 % (−24.9 % to 32.1 % for the individual SBTEX species), suggesting their value for supporting any SBTEX-related human health studies in the Gulf region. The SBTEX data were published at Zenodo (https://doi.org/10.5281/zenodo.7967541) (Wang et al., 2023), and the HAPI tool was also published at Zenodo (https://doi.org/10.5281/zenodo.7987106) (Wang and Baek, 2023).
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- 2023
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411. Radiochemistry: A Hot Field with Opportunities for Cool Chemistry
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Gregory D. Bowden, Peter J. H. Scott, and Eszter Boros
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Chemistry ,QD1-999 - Published
- 2023
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412. Experimental phasing opportunities for macromolecular crystallography at very long wavelengths
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Kamel El Omari, Ramona Duman, Vitaliy Mykhaylyk, Christian M. Orr, Merlyn Latimer-Smith, Graeme Winter, Vinay Grama, Feng Qu, Kiran Bountra, Hok Sau Kwong, Maria Romano, Rosana I. Reis, Lutz Vogeley, Luca Vecchia, C. David Owen, Sina Wittmann, Max Renner, Miki Senda, Naohiro Matsugaki, Yoshiaki Kawano, Thomas A. Bowden, Isabel Moraes, Jonathan M. Grimes, Erika J. Mancini, Martin A. Walsh, Cristiane R. Guzzo, Raymond J. Owens, E. Yvonne Jones, David G. Brown, Dave I. Stuart, Konstantinos Beis, and Armin Wagner
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Chemistry ,QD1-999 - Abstract
Abstract Despite recent advances in cryo-electron microscopy and artificial intelligence-based model predictions, a significant fraction of structure determinations by macromolecular crystallography still requires experimental phasing, usually by means of single-wavelength anomalous diffraction (SAD) techniques. Most synchrotron beamlines provide highly brilliant beams of X-rays of between 0.7 and 2 Å wavelength. Use of longer wavelengths to access the absorption edges of biologically important lighter atoms such as calcium, potassium, chlorine, sulfur and phosphorus for native-SAD phasing is attractive but technically highly challenging. The long-wavelength beamline I23 at Diamond Light Source overcomes these limitations and extends the accessible wavelength range to λ = 5.9 Å. Here we report 22 macromolecular structures solved in this extended wavelength range, using anomalous scattering from a range of elements which demonstrate the routine feasibility of lighter atom phasing. We suggest that, in light of its advantages, long-wavelength crystallography is a compelling option for experimental phasing.
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- 2023
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413. Suboptimal host tree benefits the overwintering of a destructive forest insect pest
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Eric R.D. Moise, Joseph J. Bowden, and Michael Stastny
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Spruce budworm ,Winter survival ,Black spruce ,Balsam fir ,Performance ,Sublethal ,Ecology ,QH540-549.5 - Abstract
Winter represents a stressful period for many organisms, and terrestrial insects are particularly susceptible to adverse thermal conditions. However, exposure to thermal stress and its effects on insect survival and performance can be modulated by various external factors. In forest systems, the overwintering microsite, stand structure, and regional climatic conditions may play a role in overwintering survival and performance at the individual microsite, local stand, and landscape level, respectively. To better understand the effects of these potential influences, rarely examined simultaneously, we deployed wild and lab-reared diapausing spruce budworm in a series of field experiments established across a range of spatial scales.Overwintering survival was higher on black spruce than balsam fir, likely owing to differences in substrate structure (and hence microsite quality/availability) between these two hosts. At the stand level, neither tree species nor age had an impact on insect survival; however, we observed a positive carryover effect of overwintering in a black spruce stand, enhancing performance in post-diapause development, possibly owing to buffering against warm spells during winter. Lastly, despite exposure to a broad range of winter temperatures across an extensive latitudinal gradient, overwintering survival was high (>80%) and did not vary at the landscape level.Our results indicate that insect overwintering was influenced by environmental factors at multiple spatial scales. Interestingly, despite it being considered a poor host for larval feeding, overwintering on black spruce clearly benefited spruce budworm survival and post-diapause performance. Secondly, microsite and stand-level factors had a greater impact than did regional climate variation. Collectively, these findings highlight the importance of finer-scale environmental factors on larval overwintering at both the lethal and sub-lethal level, with implications for basic and applied ecology of this iconic forest insect pest.
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- 2023
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414. An atlas of seabed biodiversity for Aotearoa New Zealand
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F. Stephenson, T. Brough, D. Lohrer, D. Leduc, S. Geange, O. Anderson, D. Bowden, M. R. Clark, N. Davey, E. Pardo, D. P. Gordon, B. Finucci, M. Kelly, D. Macpherson, L. McCartain, S. Mills, K. Neill, W. Nelson, R. Peart, M. H. Pinkerton, G. B. Read, J. Robertson, A. Rowden, K. Schnabel, A. Stewart, C. Struthers, L. Tait, D. Tracey, S. Weston, and C. Lundquist
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The waters of Aotearoa New Zealand span over 4.2 million km2 of the South Pacific Ocean and harbour a rich diversity of seafloor-associated taxa. Due to the immensity and remoteness of the area, there are significant gaps in the availability of data that can be used to quantify and map the distribution of seafloor and demersal biodiversity, limiting effective management. In this study, we describe the development and accessibility of an online atlas of seabed biodiversity that aims to fill these gaps. Species distribution models were developed for 579 taxa across four taxonomic groups: demersal fish, reef fish, subtidal invertebrates and macroalgae. Spatial layers for taxa distribution based on habitat suitability were statistically validated and then, as a further check, evaluated by taxonomic experts to provide measures of confidence to guide the future use of these layers. Spatially explicit uncertainty (SD) layers were also developed for each taxon distribution. We generated layer-specific metadata, including statistical and expert evaluation scores, which were uploaded alongside the accompanying spatial layers to the open access database Zenodo. This database provides the most comprehensive source of information on the distribution of seafloor taxa for Aotearoa New Zealand and is thus a valuable resource for managers, researchers and the public that will guide the management and conservation of seafloor communities. The atlas of seabed biodiversity for Aotearoa New Zealand is freely accessible via the open-access database Zenodo under https://doi.org/10.5281/zenodo.7083642 (Stephenson et al., 2022).
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- 2023
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415. Association of Treatment Duration and Clinical Outcomes in Dry Eye Treatment with Sutureless Cryopreserved Amniotic Membrane
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McDonald M, Janik SB, Bowden FW, Chokshi A, Singer MA, Tighe S, Mead OG, Nanda S, Qazi MA, Dierker D, Shupe AT, and McMurren BJ
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amniotic membrane ,cryopreserved ,dry eye ,ocular surface ,prokera ,Ophthalmology ,RE1-994 - Abstract
Marguerite McDonald,1 Susan B Janik,2 Frank W Bowden,3 Amit Chokshi,4 Michael A Singer,5 Sean Tighe,6,7 Olivia G Mead,6 Seema Nanda,8 Mujtaba A Qazi,9 Damon Dierker,10 Adam T Shupe,11 Brittany J McMurren12 1Ophthalmic Consultants of Long Island, Lynbrook, NY, USA; 2Solinsky Eye Care, Kensington, CT, USA; 3Bowden Eye & Associates, Jacksonville, FL, USA; 4Florida Eye Specialists, Jacksonville, FL, USA; 5Medical Center Ophthalmology Associates, San Antonio, TX, USA; 6BioTissue Holdings, Inc, Miami, FL, USA; 7Florida International University Herbert Wertheim College of Medicine, Miami, FL, USA; 8Nanda Dry Eye & Vision Institute, Houston, TX, USA; 9Pepose Vision Institute, Chesterfield, MO, USA; 10Eye Surgeons of Indiana, Indianapolis, IN, USA; 11Royo Eye Care, Marysville, CA, USA; 12Werner Optometry, San Diego, CA, USACorrespondence: Sean Tighe, 7300 Corporate Center Drive, Suite 700, Miami, FL, 33126, USA, Email stighe@biotissue.comBackground: While sutureless, cryopreserved amniotic membrane (cAM) has been shown to significantly improve signs and symptoms of dry eye disease (DED), no studies have assessed the association of cAM treatment duration to the differential response in clinical outcomes.Methods: A multi-center, retrospective study was conducted on patients with moderate-to-severe DED who were treated with self-retained cAM (Prokera® Slim) for 2 to 7 days. The primary outcome measure was DEWS severity score assessed at 1 week, 1 month, and 3 months. Secondary outcome measures included ocular discomfort, visual symptoms, corneal staining, and visual acuity.Results: A total of 89 eyes (77 patients) with moderate-to-severe DED (DEWS severity 3.24 ± 0.56) received treatment with self-retained cAM for 2 days (n = 10), 3 days (n = 15), 4 days (n = 12), 5 days (n = 19), 6 days (n = 6), or 7 days (n = 27). DEWS scores significantly improved at 1 week, 1 month, and 3 months for all treatment duration groups, with no significant difference observed between groups at any timepoint. In addition to an improvement in DEWS severity scores, those receiving cAM treatment for 2 days demonstrated a significant improvement in corneal staining, visual symptoms, and ocular discomfort at 1 week, 1 month, and 3 months.Conclusion: This retrospective study suggests that a single placement of self-retained cAM for 2 days can significantly improve signs and symptoms of DED with a lasting benefit observed for up to 3 months.Keywords: amniotic membrane, cryopreserved, dry eye, ocular surface, Prokera
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- 2023
416. Guided anisotropic oxygen transport in vacancy ordered oxides
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Zhenzhong Yang, Le Wang, Jeffrey A. Dhas, Mark H. Engelhard, Mark E. Bowden, Wen Liu, Zihua Zhu, Chongmin Wang, Scott A. Chambers, Peter V. Sushko, and Yingge Du
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Science - Abstract
Abstract Anisotropic and efficient transport of ions under external stimuli governs the operation and failure mechanisms of energy-conversion systems and microelectronics devices. However, fundamental understanding of ion hopping processes is impeded by the lack of atomically precise materials and probes that allow for the monitoring and control at the appropriate time- and length- scales. In this work, using in-situ transmission electron microscopy, we directly show that oxygen ion migration in vacancy ordered, semiconducting SrFeO2.5 epitaxial thin films can be guided to proceed through two distinctly different diffusion pathways, each resulting in different polymorphs of SrFeO2.75 with different ground electronic properties before reaching a fully oxidized, metallic SrFeO3 phase. The diffusion steps and reaction intermediates are revealed by means of ab-initio calculations. The principles of controlling oxygen diffusion pathways and reaction intermediates demonstrated here may advance the rational design of structurally ordered oxides for tailored applications and provide insights for developing devices with multiple states of regulation.
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- 2023
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417. Multifunctional human monoclonal antibody combination mediates protection against Rift Valley fever virus at low doses
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Nathaniel S. Chapman, Ruben J. G. Hulswit, Jonna L. B. Westover, Robert Stass, Guido C. Paesen, Elad Binshtein, Joseph X. Reidy, Taylor B. Engdahl, Laura S. Handal, Alejandra Flores, Brian B. Gowen, Thomas A. Bowden, and James E. Crowe
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Science - Abstract
Abstract The zoonotic Rift Valley fever virus (RVFV) can cause severe disease in humans and has pandemic potential, yet no approved vaccine or therapy exists. Here we describe a dual-mechanism human monoclonal antibody (mAb) combination against RVFV that is effective at minimal doses in a lethal mouse model of infection. We structurally analyze and characterize the binding mode of a prototypical potent Gn domain-A-binding antibody that blocks attachment and of an antibody that inhibits infection by abrogating the fusion process as previously determined. Surprisingly, the Gn domain-A antibody does not directly block RVFV Gn interaction with the host receptor low density lipoprotein receptor-related protein 1 (LRP1) as determined by a competitive assay. This study identifies a rationally designed combination of human mAbs deserving of future investigation for use in humans against RVFV infection. Using a two-pronged mechanistic approach, we demonstrate the potent efficacy of a rationally designed combination mAb therapeutic.
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- 2023
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418. Association between circadian physical activity patterns and mortality in the UK Biobank
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Michael J. Stein, Hansjörg Baurecht, Anja M. Sedlmeier, Julian Konzok, Patricia Bohmann, Emma Fontvieille, Laia Peruchet-Noray, Jack Bowden, Christine M. Friedenreich, Béatrice Fervers, Pietro Ferrari, Marc J. Gunter, Heinz Freisling, Michael F. Leitzmann, Vivian Viallon, and Andrea Weber
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Physical activity patterns ,All-cause mortality ,UK Biobank ,Raw accelerometry ,Nutritional diseases. Deficiency diseases ,RC620-627 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The benefit of physical activity (PA) for increasing longevity is well-established, however, the impact of diurnal timing of PA on mortality remains poorly understood. We aimed to derive circadian PA patterns and investigate their associations with all-cause mortality. Methods We used 24 h PA time series from 96,351 UK Biobank participants aged between 42 and 79 years at accelerometry in 2013–2015. Functional principal component analysis (fPCA) was applied to obtain circadian PA patterns. Using multivariable Cox proportional hazard models, we related the loading scores of these fPCs to estimate risk of mortality. Results During 6.9 years of follow-up, 2,850 deaths occurred. Four distinct fPCs accounted for 96% of the variation of the accelerometry data. Using a loading score of zero (i.e., average overall PA during the day) as the reference, a fPC1 score of + 2 (high overall PA) was inversely associated with mortality (Hazard ratio, HR = 0.91; 95% CI: 0.84–0.99), whereas a score of -2 (low overall PA) was associated with higher mortality (1.69; 95% CI: 1.57–1.81; p for non-linearity
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- 2023
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419. Body mass index and inflammation in depression and treatment-resistant depression: a Mendelian randomisation study
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Vasilios Karageorgiou, Francesco Casanova, Jessica O’Loughlin, Harry Green, Trevelyan J. McKinley, Jack Bowden, and Jessica Tyrrell
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Mendelian randomisation ,Body mass index ,Depression ,Medicine - Abstract
Abstract Background Major depressive disorder (MDD) has a significant impact on global burden of disease. Complications in clinical management can occur when response to pharmacological modalities is considered inadequate and symptoms persist (treatment-resistant depression (TRD)). We aim to investigate inflammation, proxied by C-reactive protein (CRP) levels, and body mass index (BMI) as putative causal risk factors for depression and subsequent treatment resistance, leveraging genetic information to avoid confounding via Mendelian randomisation (MR). Methods We used the European UK Biobank subcohort ( $$n=451,025$$ n = 451 , 025 ), the mental health questionnaire (MHQ) and clinical records. For treatment resistance, a previously curated phenotype based on general practitioner (GP) records and prescription data was employed. We applied univariable and multivariable MR models to genetically predict the exposures and assess their causal contribution to a range of depression outcomes. We used a range of univariable, multivariable and mediation MR models techniques to address our research question with maximum rigour. In addition, we developed a novel statistical procedure to apply pleiotropy-robust multivariable MR to one sample data and employed a Bayesian bootstrap procedure to accurately quantify estimate uncertainty in mediation analysis which outperforms standard approaches in sparse binary outcomes. Given the flexibility of the one-sample design, we evaluated age and sex as moderators of the effects. Results In univariable MR models, genetically predicted BMI was positively associated with depression outcomes, including MDD ( $$\beta$$ β ( $$95\%$$ 95 % CI): 0.133(0.072, 0.205)) and TRD (0.347(0.002, 0.682)), with a larger magnitude in females and with age acting as a moderator of the effect of BMI on severity of depression (0.22(0.050, 0.389)). Multivariable MR analyses suggested an independent causal effect of BMI on TRD not through CRP (0.395(0.004, 0.732)). Our mediation analyses suggested that the effect of CRP on severity of depression was partly mediated by BMI. Individuals with TRD ( $$n=2199$$ n = 2199 ) observationally had higher CRP and BMI compared with individuals with MDD alone and healthy controls. Discussion Our work supports the assertion that BMI exerts a causal effect on a range of clinical and questionnaire-based depression phenotypes, with the effect being stronger in females and in younger individuals. We show that this effect is independent of inflammation proxied by CRP levels as the effects of CRP do not persist when jointly estimated with BMI. This is consistent with previous evidence suggesting that overweight contributed to depression even in the absence of any metabolic consequences. It appears that BMI exerts an effect on TRD that persists when we account for BMI influencing MDD.
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- 2023
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420. EMI policy in practice
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Bowden, Rachel, primary, Dushimimana, Jean Claude, additional, Uwineza, Innocente, additional, and Uworwabayeho, Alphonse, additional
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- 2023
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421. English and Irish Women Religious at Home and Abroad, c.1530–c.1640
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Bowden, Caroline, primary and McShane, Bronagh Ann, additional
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- 2023
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422. Russia-Ukraine War
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Mahuku, Darlington N., primary, Chipaike, Ronald, additional, and Mbanje, Bowden B. C., additional
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- 2023
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423. The Technological Revolution That Never Was
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Bowden, Sue, primary and Offer, Avner, additional
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- 2023
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424. Trees in Nineteenth-Century English Fiction: The Silvicultural Novel by Anna Burton (review)
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Bowden, Mary
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- 2024
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425. Evidence-based brief interventions targeting acute mental health presentations for children and adolescents: systematic review
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Valsamma Eapen, Brigitte Gerstl, Bright Opoku Ahinkorah, James Rufus John, Patrick Hawker, Thomas P. Nguyen, Febe Brice, Teresa Winata, and Michael Bowden
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Mental health services ,child and adolescent mental health services ,brief intervention ,early intervention ,crisis intervention ,Psychiatry ,RC435-571 - Abstract
Background Brief intervention services provide rapid, mobile and flexible short-term delivery of interventions to resolve mental health crises. These interventions may provide an alternative pathway to the emergency department or in-patient psychiatric services for children and young people (CYP), presenting with an acute mental health condition. Aims To synthesise evidence on the effectiveness of brief interventions in improving mental health outcomes for CYP (0–17 years) presenting with an acute mental health condition. Method A systematic literature search was conducted, and the studies’ methodological quality was assessed. Five databases were searched for peer-reviewed articles between January 2000 and September 2022. Results We synthesised 30 articles on the effectiveness of brief interventions in the form of (a) crisis intervention, (b) integrated services, (c) group therapies, (d) individualised therapy, (e) parent–child dyadic therapy, (f) general services, (g) pharmacotherapy, (h) assessment services, (i) safety and risk planning and (j) in-hospital treatment, to improve outcomes for CYP with an acute mental health condition. Among included studies, one study was rated as providing a high level of evidence based on the National Health and Medical Research Council levels of evidence hierarchy scale, which was a crisis intervention showing a reduction in length of stay and return emergency department visits. Other studies, of moderate-quality evidence, described multimodal brief interventions that suggested beneficial effects. Conclusions This review provides evidence to substantiate the benefits of brief interventions, in different settings, to reduce the burden of in-patient hospital and readmission rates to the emergency department.
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- 2024
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426. Role of Solvent in the Oriented Growth of Conductive Ni‐CAT‐1 Metal‐Organic Framework at Solid–Liquid Interfaces
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Sun Hae Ra Shin, Jinhui Tao, Nathan L. Canfield, Mark E. Bowden, Lili Liu, Bhuvaneswari M. Sivakumar, Jun Liu, James J. De Yoreo, Praveen K. Thallapally, and Maria L. Sushko
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2D materials ,heterogeneous nucleation ,metal‐organic frameworks ,oriented growth ,solvent ,Physics ,QC1-999 ,Technology - Abstract
Abstract A controlled growth of two‐dimensional (2D) π‐conjugated metal‐organic frameworks (MOFs) on solid substrates can open exciting opportunities for the application of 2D MOFs as optoelectronic devices. Some factors like solvent composition and type of substrates are known to influence the properties of solution‐processed 2D MOF crystals; however, a mechanistic understanding of how interactions between solvent, substrate, and precursors affect heterogeneous nucleation has been limited. Here, it is reported that the structure of Ni‐catecholate (Ni‐CAT‐1) MOFs at a solid–liquid interface is controlled by solvent–substrate and solvent–MOF precursor interactions. Specifically, the structure of the MOF film can be controlled by varying the affinity of the solvent to the substrate. As a fraction of N,N‐dimethylformamide (DMF) in a binary solvent mixture of water and DMF increases, the arrangement of Ni‐CAT‐1 crystals varies from vertically aligned nanorods to the graphite substrate to less ordered nanorods with the lower initial nucleation number density of Ni‐CAT‐1 crystals on the surface.
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- 2024
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427. Combining neuropsychological assessment and structural neuroimaging to identify early Alzheimer's disease in a memory clinic cohort
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Yi‐En Quek, Yi Leng Fung, Pierrick Bourgeat, Simon J. Vogrin, Steven J. Collins, and Stephen C. Bowden
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Alzheimer's disease ,magnetic resonance imaging ,memory clinic ,neuropsychology ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Introduction The current study examined the contributions of comprehensive neuropsychological assessment and volumetric assessment of selected mesial temporal subregions on structural magnetic resonance imaging (MRI) to identify patients with amnestic mild cognitive impairment (aMCI) and mild probable Alzheimer's disease (AD) dementia in a memory clinic cohort. Methods Comprehensive neuropsychological assessment and automated entorhinal, transentorhinal, and hippocampal volume measurements were conducted in 40 healthy controls, 38 patients with subjective memory symptoms, 16 patients with aMCI, 16 patients with mild probable AD dementia. Multinomial logistic regression was used to compare the neuropsychological and MRI measures. Results Combining the neuropsychological and MRI measures improved group membership prediction over the MRI measures alone but did not improve group membership prediction over the neuropsychological measures alone. Conclusion Comprehensive neuropsychological assessment was an important tool to evaluate cognitive impairment. The mesial temporal volumetric MRI measures contributed no diagnostic value over and above the determinations made through neuropsychological assessment.
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- 2024
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428. Current policies in Europe and South Asia do not prevent veterinary use of drugs toxic to vultures
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Sophie E. Cook, Rhys E. Green, Eva Lieberherr, Christopher G. R. Bowden, Muhammed Jamshed Iqbal Chaudhry, A. B. M. Sarowar Alam, S. Bharathidasan, Vibhu Prakash, Abhishek Ghoshal, Antoni Margalida, Mohammed Shobrak, and Ishana Thapa
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aceclofenac ,diclofenac ,drug licensing ,flunixin ,ketoprofen ,meloxicam ,Environmental sciences ,GE1-350 ,Ecology ,QH540-549.5 - Abstract
Abstract Population declines of vultures of the genus Gyps in the Indian Subcontinent in the 1990s and 2000s were among the most rapid global population declines recorded for any bird species. Multiple lines of evidence identified veterinary treatment of cattle with the non‐steroidal anti‐inflammatory drug (NSAID) diclofenac as the principal cause of the vulture population crash. Diclofenac causes kidney failure and death within a few days of a vulture scavenging the carcass of a recently treated cow. Despite coordinated regulatory action by governments to ban veterinary diclofenac in South Asia, enforcement has been incomplete in many areas. Progress in preventing the veterinary use of other NSAIDs now also known to be vulture‐toxic has been slow. A mosaic of inconsistent licensing processes currently exists across South Asian vulture range states, leading to issues with successful policy implementation, legitimacy and effectiveness. At present, mandatory safety testing to ensure NSAIDs already in use or proposed for use are vulture‐safe is not part of drug licensing procedures in any vulture range state. In 2021, Bangladesh became the first country to ban a vulture‐toxic NSAID, in addition to diclofenac, by banning veterinary use of ketoprofen. In 2023, India became the second country to take this step when the government announced a ban on veterinary aceclofenac and ketoprofen. This government action in India may have been triggered by a recent legal challenge. Despite its veterinary use now being banned in South Asian and the Middle Eastern countries, diclofenac has been authorised for sale since 2013 as a veterinary drug in Spain, even though Spain holds 90% of the vulture population of Europe. The European Commission's decision to leave the authorisation of this drug to Member States is at odds with a central pillar of environmental law in the European Union (EU): the precautionary principle. Furthermore, this approach is not consistent with the stringent standards and burden of proof applied to the licensing of EU plant protection products. Solution. A solution to this lack of protection of Gyps vulture populations is for regulatory regimes for veterinary NSAIDs to be augmented.
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- 2024
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429. Evidence-based long term interventions targeting acute mental health presentations for children and adolescents: systematic review
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Brigitte Gerstl, Bright Opoku Ahinkorah, Thomas P. Nguyen, James Rufus John, Patrick Hawker, Teresa Winata, Febe Brice, Michael Bowden, and Valsamma Eapen
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mental health services ,child and adolescent mental health services ,mental health intervention ,psychological distress ,evidence base ,Psychiatry ,RC435-571 - Abstract
BackgroundLong term intervention services have proven to be effective in improving mental health (MH) outcomes and the quality of life for children and young people (CYP).AimTo synthesize evidence on the effectiveness of long-term interventions in improving MH outcomes for CYP, 0-17 years, presenting with MH conditions.MethodsA systematic search was carried out and the methodological quality of included long term MH intervention studies were assessed. Six databases were searched for peer-reviewed articles between January 2000 and September 2022.ResultsWe found 30 studies that reported on the effectiveness of a range of long-term MH interventions in the form of (i) group therapy, (ii) multisystemic behavior therapy, (iii) general services, (iv) integrated services, (v) psychotherapy, (vi) intensive intervention services, (vii) comprehensive collaborative care, (viii) parent training, and (ix) home outreach service. Among the included studies, seven were rated as high level of evidence based on the National Health and Medical Research Council (NHMRC) levels of evidence hierarchy scale and seven were of moderate quality evidence. Others were rated as lower-quality evidence. Among the studies providing high quality evidence, most were reported for group therapy, general services, and psychotherapy studies demonstrating beneficial effects.ConclusionThis systematic review provides evidence to demonstrate the benefits of a range of long-term interventions, in a range of settings, can be effective in improving MH outcomes for CYP and their families.Systematic review registrationhttps://www.crd.york.ac.uk/prospero/, identifier CRD42022323324.
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- 2024
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430. Electrical impedance tomography in anaesthetised chickens (Gallus domesticus)
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Adrian M. Wong, Hei Y. Lum, Gabrielle C. Musk, Timothy H. Hyndman, Andreas D. Waldmann, Deborah J. Monks, Ross S. Bowden, and Martina Mosing
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air sacs ,avian ,birds ,breathing pattern ,distribution of ventilation ,recumbency ,Veterinary medicine ,SF600-1100 - Abstract
The applicability of electrical impedance tomography (EIT) in birds is unknown. This study aimed to evaluate the use of EIT in anaesthetised chickens in four recumbency positions. Four adult Hyline chickens were anaesthetised with isoflurane in oxygen, and intubated endotracheally for computed tomography (CT). A rubber belt was placed around the coelom caudal to the shoulder joint. A chicken-specific finite element (FE) model, which is essential to generate anatomically accurate functional EIT images for analysis, was constructed based on the CT images obtained at the belt level. Ten additional chickens were anaesthetised with the same protocol. An EIT electrode belt was placed at the same location. The chickens were breathing spontaneously and positioned in dorsal, ventral, right and left lateral recumbency in a randomised order. For each recumbency, raw EIT data were collected over 2 min after 13 min of stabilisation. The data were reconstructed into functional EIT images. EIT variables including tidal impedance variation (TIV), centre of ventilation right to left (CoVRL) and ventral to dorsal (CoVVD), right to left (RL) ratio, impedance change (ΔZ) and eight regional impedance changes including the dorsal, central-dorsal, central-ventral and ventral regions of the right and left regions were analysed. Four breathing patterns (BrP) were observed and categorised based on the expiratory curve. A linear mixed model was used to compare EIT variables between recumbencies. Fisher's exact test was used to compare the frequencies of breathing patterns for each recumbency. The ΔZ observed was synchronous to ventilation, and represented tidal volume of the cranial air sacs as confirmed by CT. Significant differences were found in CoVVD and regional impedance changes between dorsal and ventral recumbencies (P < 0.05), and in CoVRL, RL ratio and regional impedance changes between right and left recumbencies (P < 0.05), which suggested a tendency for the distribution of ventilation to shift towards non-dependent air sacs. No differences were found for TIV and respiratory rate between recumbencies. Recumbency had a significant effect on the frequencies of each of the four BrPs (P = 0.001). EIT can monitor the magnitude and distribution of ventilation of the cranial air sacs in different recumbencies in anaesthetised chickens.
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- 2024
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431. Bacteriophage specificity is impacted by interactions between bacteria
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Ave T. Bisesi, Wolfram Möbius, Carey D. Nadell, Eleanore G. Hansen, Steven D. Bowden, and William R. Harcombe
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bacteriophages ,virus-host interactions ,microbial communities ,microbial ecology ,competition ,mutualism ,Microbiology ,QR1-502 - Abstract
ABSTRACTPredators play a central role in shaping community structure, function, and stability. The degree to which bacteriophage predators (viruses that infect bacteria) evolve to be specialists with a single bacterial prey species versus generalists able to consume multiple types of prey has implications for their effect on microbial communities. The presence and abundance of multiple bacterial prey types can alter selection for phage generalists, but less is known about how interactions between prey shape predator specificity in microbial systems. Using a phenomenological mathematical model of phage and bacterial populations, we find that the dominant phage strategy depends on prey ecology. Given a fitness cost for generalism, generalist predators maintain an advantage when prey species compete, while specialists dominate when prey are obligately engaged in cross-feeding interactions. We test these predictions in a synthetic microbial community with interacting strains of Escherichia coli and Salmonella enterica by competing a generalist T5-like phage able to infect both prey against P22vir, an S. enterica-specific phage. Our experimental data conform to our modeling expectations when prey species are competing or obligately mutualistic, although our results suggest that the in vitro cost of generalism is caused by a combination of biological mechanisms not anticipated in our model. Our work demonstrates that interactions between bacteria play a role in shaping ecological selection on predator specificity in obligately lytic bacteriophages and emphasizes the diversity of ways in which fitness trade-offs can manifest.IMPORTANCEThere is significant natural diversity in how many different types of bacteria a bacteriophage can infect, but the mechanisms driving this diversity are unclear. This study uses a combination of mathematical modeling and an in vitro system consisting of Escherichia coli, Salmonella enterica, a T5-like generalist phage, and the specialist phage P22vir to highlight the connection between bacteriophage specificity and interactions between their potential microbial prey. Mathematical modeling suggests that competing bacteria tend to favor generalist bacteriophage, while bacteria that benefit each other tend to favor specialist bacteriophage. Experimental results support this general finding. The experiments also show that the optimal phage strategy is impacted by phage degradation and bacterial physiology. These findings enhance our understanding of how complex microbial communities shape selection on bacteriophage specificity, which may improve our ability to use phage to manage antibiotic-resistant microbial infections.
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- 2024
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432. An End-to-End Solution for Named Entity Recognition in eCommerce Search
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Cheng, Xiang, Bowden, Mitchell, Bhange, Bhushan Ramesh, Goyal, Priyanka, Packer, Thomas, and Javed, Faizan
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Named entity recognition (NER) is a critical step in modern search query understanding. In the domain of eCommerce, identifying the key entities, such as brand and product type, can help a search engine retrieve relevant products and therefore offer an engaging shopping experience. Recent research shows promising results on shared benchmark NER tasks using deep learning methods, but there are still unique challenges in the industry regarding domain knowledge, training data, and model production. This paper demonstrates an end-to-end solution to address these challenges. The core of our solution is a novel model training framework "TripleLearn" which iteratively learns from three separate training datasets, instead of one training set as is traditionally done. Using this approach, the best model lifts the F1 score from 69.5 to 93.3 on the holdout test data. In our offline experiments, TripleLearn improved the model performance compared to traditional training approaches which use a single set of training data. Moreover, in the online A/B test, we see significant improvements in user engagement and revenue conversion. The model has been live on homedepot.com for more than 9 months, boosting search conversions and revenue. Beyond our application, this TripleLearn framework, as well as the end-to-end process, is model-independent and problem-independent, so it can be generalized to more industrial applications, especially to the eCommerce industry which has similar data foundations and problems., Comment: Accepted by AAAI IAAI-2021 Highly Innovative Applications of AI track
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- 2020
433. Connecting Instrumental Variable methods for causal inference to the Estimand Framework
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Bowden, Jack, Bornkamp, Bjoern, Glimm, Ekkehard, and Bretz, Frank
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Statistics - Methodology ,Statistics - Applications - Abstract
Causal inference methods are gaining increasing prominence in pharmaceutical drug development in light of the recently published addendum on estimands and sensitivity analysis in clinical trials to the E9 guideline of the International Council for Harmonisation. The E9 addendum emphasises the need to account for post-randomization or `intercurrent' events that can potentially influence the interpretation of a treatment effect estimate at a trial's conclusion. Instrumental Variables (IV) methods have been used extensively in economics, epidemiology and academic clinical studies for `causal inference', but less so in the pharmaceutical industry setting until now. In this tutorial paper we review the basic tools for causal inference, including graphical diagrams and potential outcomes, as well as several conceptual frameworks that an IV analysis can sit within. We discuss in detail how to map these approaches to the Treatment Policy, Principal Stratum and Hypothetical `estimand strategies' introduced in the E9 addendum, and provide details of their implementation using standard regression models. Specific attention is given to discussing the assumptions each estimation strategy relies on in order to be consistent, the extent to which they can be empirically tested and sensitivity analyses in which specific assumptions can be relaxed. We finish by applying the methods described to simulated data closely matching two recent pharmaceutical trials to further motivate and clarify the ideas, Comment: 29 pages, 9 Figures, 1 Table
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- 2020
434. Athena: Constructing Dialogues Dynamically with Discourse Constraints
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Harrison, Vrindavan, Juraska, Juraj, Cui, Wen, Reed, Lena, Bowden, Kevin K., Wu, Jiaqi, Schwarzmann, Brian, Ebrahimi, Abteen, Rajasekaran, Rishi, Varghese, Nikhil, Wechsler-Azen, Max, Whittaker, Steve, Flanigan, Jeffrey, and Walker, Marilyn
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Computer Science - Computation and Language - Abstract
This report describes Athena, a dialogue system for spoken conversation on popular topics and current events. We develop a flexible topic-agnostic approach to dialogue management that dynamically configures dialogue based on general principles of entity and topic coherence. Athena's dialogue manager uses a contract-based method where discourse constraints are dispatched to clusters of response generators. This allows Athena to procure responses from dynamic sources, such as knowledge graph traversals and feature-based on-the-fly response retrieval methods. After describing the dialogue system architecture, we perform an analysis of conversations that Athena participated in during the 2019 Alexa Prize Competition. We conclude with a report on several user studies we carried out to better understand how individual user characteristics affect system ratings., Comment: 3rd Proceedings of Alexa Prize (Alexa Prize 2019)
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- 2020
435. Everybody Sign Now: Translating Spoken Language to Photo Realistic Sign Language Video
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Saunders, Ben, Camgoz, Necati Cihan, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computation and Language ,Computer Science - Machine Learning - Abstract
To be truly understandable and accepted by Deaf communities, an automatic Sign Language Production (SLP) system must generate a photo-realistic signer. Prior approaches based on graphical avatars have proven unpopular, whereas recent neural SLP works that produce skeleton pose sequences have been shown to be not understandable to Deaf viewers. In this paper, we propose SignGAN, the first SLP model to produce photo-realistic continuous sign language videos directly from spoken language. We employ a transformer architecture with a Mixture Density Network (MDN) formulation to handle the translation from spoken language to skeletal pose. A pose-conditioned human synthesis model is then introduced to generate a photo-realistic sign language video from the skeletal pose sequence. This allows the photo-realistic production of sign videos directly translated from written text. We further propose a novel keypoint-based loss function, which significantly improves the quality of synthesized hand images, operating in the keypoint space to avoid issues caused by motion blur. In addition, we introduce a method for controllable video generation, enabling training on large, diverse sign language datasets and providing the ability to control the signer appearance at inference. Using a dataset of eight different sign language interpreters extracted from broadcast footage, we show that SignGAN significantly outperforms all baseline methods for quantitative metrics and human perceptual studies.
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- 2020
436. Improving the Q factor of an optical atomic clock using quantum non-demolition measurement
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Bowden, William, Vianello, Alvise, Hill, Ian R, Schioppo, Marco, and Hobson, Richard
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Physics - Atomic Physics ,Physics - Optics ,Quantum Physics - Abstract
Quantum non-demolition (QND) measurement is a remarkable tool for the manipulation of quantum systems. It allows specific information to be extracted while still preserving fragile quantum observables of the system. Here we apply cavity-based QND measurement to an optical lattice clock---a type of atomic clock with unrivalled frequency precision---preserving the quantum coherence of the atoms after readout with 80\% fidelity. We apply this technique to stabilise the phase of an ultrastable laser to a coherent atomic state via a series of repeated QND measurements. We exploit the improved phase-coherence of the ultrastable laser to interrogate a separate optical lattice clock, using a Ramsey spectroscopy time extended from 300~ms to 2~s. With this technique we maintain 95\% contrast and observe a seven-fold increase in the clock's \emph{Q} factor to $1.7\times10^{15}$., Comment: 11 pages, 5 figures
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- 2020
437. Targeted VAE: Variational and Targeted Learning for Causal Inference
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Vowels, Matthew James, Camgoz, Necati Cihan, and Bowden, Richard
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Statistics - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Undertaking causal inference with observational data is incredibly useful across a wide range of tasks including the development of medical treatments, advertisements and marketing, and policy making. There are two significant challenges associated with undertaking causal inference using observational data: treatment assignment heterogeneity (\textit{i.e.}, differences between the treated and untreated groups), and an absence of counterfactual data (\textit{i.e.}, not knowing what would have happened if an individual who did get treatment, were instead to have not been treated). We address these two challenges by combining structured inference and targeted learning. In terms of structure, we factorize the joint distribution into risk, confounding, instrumental, and miscellaneous factors, and in terms of targeted learning, we apply a regularizer derived from the influence curve in order to reduce residual bias. An ablation study is undertaken, and an evaluation on benchmark datasets demonstrates that TVAE has competitive and state of the art performance.
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- 2020
438. On the investigation of the closure relations for Gamma-Ray Bursts observed by Swift in the post-plateau phase and the GRB fundamental plane
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Srinivasaragavan, Gokul Prem, Dainotti, Maria Giovanna, Fraija, Nissim, Hernandez, Xavier, Nagataki, Shigehiro, Lenart, Aleksander, Bowden, Luke, and Wagner, Robert
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
Gamma-Ray Bursts (GRBs) are the most explosive phenomena in the Universe after the Big Bang. A large fraction of GRB lightcurves (LCs) shows X-ray plateaus. We perform the most comprehensive analysis of all GRBs (with known and unknown redshifts) with plateau emission observed by The Neil Gehrels Swift Observatory from its launch until August 2019. We fit 455 LCs showing a plateau and explore whether these LCs follow closure relations, relations between the temporal and spectral indices of the afterglow, corresponding to 2 distinct astrophysical environments and cooling regimes within the external forward shock (ES) model, and find that the ES model works for the majority of cases. The most favored environments are a constant density interstellar or wind medium with slow cooling. We also confirm the existence of the fundamental plane relation between the rest-frame time and luminosity at the end of the plateau emission and the peak prompt luminosity for this enlarged sample, and test this relation on groups corresponding to the astrophysical environments of our known redshift sample. The plane becomes a crucial discriminant corresponding to these environments in terms of the best fitting parameters and dispersions. Most GRBs for which the closure relations are fulfilled with respect to astrophysical environments have an intrinsic scatter sigma compatible within 1 sigma of that of the Gold GRBs, a subset of long GRBs with relatively flat plateaus. We also find that GRBs satisfying closure relations indicating a fast cooling regime have a lower sigma than ever previously found in literature., Comment: Accepted in ApJ, 24 pages, 10 figures; modified order of co-author list; updated Acknowledgements and journal proofs; updated journal acceptance Information
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- 2020
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439. Multi-channel Transformers for Multi-articulatory Sign Language Translation
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Camgoz, Necati Cihan, Koller, Oscar, Hadfield, Simon, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Sign languages use multiple asynchronous information channels (articulators), not just the hands but also the face and body, which computational approaches often ignore. In this paper we tackle the multi-articulatory sign language translation task and propose a novel multi-channel transformer architecture. The proposed architecture allows both the inter and intra contextual relationships between different sign articulators to be modelled within the transformer network itself, while also maintaining channel specific information. We evaluate our approach on the RWTH-PHOENIX-Weather-2014T dataset and report competitive translation performance. Importantly, we overcome the reliance on gloss annotations which underpin other state-of-the-art approaches, thereby removing future need for expensive curated datasets.
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- 2020
440. Measurement of Muon-induced High-energy Neutrons from Rock in an Underground Gd-doped Water Detector
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Sutanto, F., Akindele, O. A., Askins, M., Bergevin, M., Bernstein, A., Bowden, N. S., Dazeley, S., Jaffke, P., Jovanovic, I., Quillin, S., Roecker, C., and Rountree, S. D.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
We present a measurement of the rate of correlated neutron captures in the WATCHBOY detector, deployed at a depth of approximately 390 meters water equivalent (m.w.e.) in the Kimballton Underground Research Facility (KURF). WATCHBOY consists of a cylindrical 2 ton water target doped with 0.1% gadolinium, surrounded by a 40 ton undoped water hermetic shield. We present a comparison of our results with the expected rate of correlated neutron captures arising from high-energy neutrons incident on the outside of the WATCHBOY shield, predicted by a hybrid FLUKA/GEANT4-based simulation. The incident neutron energy distribution used in the simulation was measured by a fast neutron spectrometer, the 1.8-ton Multiplicity and Recoil Spectrometer (MARS) detector, at the same depth. We find that the measured detection rate of two correlated neutrons is consistent with that predicted by simulation. The result lends additional confidence in the detection technique used by MARS, and therefore in the MARS spectra as measured at three different depths. Confirmation of the fast neutron flux and spectrum is important as it helps validate the scaling models used to predict the fast neutron fluxes at different overburdens., Comment: 11 pages, 16 figures, Phys. Rev. C (forthcoming)
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- 2020
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441. Adversarial Training for Multi-Channel Sign Language Production
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Saunders, Ben, Camgoz, Necati Cihan, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Sign Languages are rich multi-channel languages, requiring articulation of both manual (hands) and non-manual (face and body) features in a precise, intricate manner. Sign Language Production (SLP), the automatic translation from spoken to sign languages, must embody this full sign morphology to be truly understandable by the Deaf community. Previous work has mainly focused on manual feature production, with an under-articulated output caused by regression to the mean. In this paper, we propose an Adversarial Multi-Channel approach to SLP. We frame sign production as a minimax game between a transformer-based Generator and a conditional Discriminator. Our adversarial discriminator evaluates the realism of sign production conditioned on the source text, pushing the generator towards a realistic and articulate output. Additionally, we fully encapsulate sign articulators with the inclusion of non-manual features, producing facial features and mouthing patterns. We evaluate on the challenging RWTH-PHOENIX-Weather-2014T (PHOENIX14T) dataset, and report state-of-the art SLP back-translation performance for manual production. We set new benchmarks for the production of multi-channel sign to underpin future research into realistic SLP.
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- 2020
442. Note on arXiv:2005.05301, 'Preparation of the Neutrino-4 experiment on search for sterile neutrino and the obtained results of measurements'
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Almazán, H., Andriamirado, M., Balantekin, A. B., Band, H. R., Bass, C. D., Bergeron, D. E., Berish, D., Bonhomme, A., Bowden, N. S., Brodsky, J. P., Bryan, C. D., Buck, C., Classen, T., Conant, A. J., Deichert, G., Sanchez, P. del Amo, Diwan, M. V., Dolinski, M. J., Atmani, I. El, Erickson, A., Foust, B. T., Gaison, J. K., Galindo-Uribarri, A., Gilbert, C. E., Hackett, B. T., Hans, S., Hansell, A. B., Heeger, K. M., Jaffe, D. E., Ji, X., Jones, D. C., Kyzylova, O., Labit, L., Lamblin, J., Lane, C. E., Langford, T. J., LaRosa, J., Letourneau, A., Lhuillier, D., Licciardi, M., Littlejohn, B. R., Lu, X., Maricic, J., Materna, T., Mendenhall, M. P., Meyer, A. M., Milincic, R., Mitchell, I., Mueller, P. E., Mumm, H. P., Napolitano, J., Nave, C., Neilson, R., Nikkel, J. A., Norcini, D., Nour, S., Palomino-Gallo, J. L., Pessard, H., Pushin, D. A., Qian, X., Réal, J. -S., Roca, C., Rogly, R., Romero-Romero, E., Rosero, R., Savu, V., Schoppmann, S., Soldner, T., Stutz, A., Surukuchi, P. T., Tyra, M. A., Varner, R. L., Venegas-Vargas, D., Vialat, M., Weatherly, P. B., White, C., Wilhelmi, J., Woolverton, A., Yeh, M., Zhang, A., Zhang, C., and Zhang, X.
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High Energy Physics - Experiment ,Nuclear Experiment - Abstract
We comment on the claimed observation [arXiv:arXiv:2005.05301] of sterile neutrino oscillations by the Neutrino-4 collaboration. Such a claim, which requires the existence of a new fundamental particle, demands a level of rigor commensurate with its impact. The burden lies with the Neutrino-4 collaboration to provide the information necessary to prove the validity of their claim to the community. In this note, we describe aspects of both the data and analysis method that might lead to an oscillation signature arising from a null experiment and describe additional information needed from the Neutrino-4 collaboration to support the oscillation claim. Additionally, as opposed to the assertion made by the Neutrino-4 collaboration, we also show that the method of 'coherent summation' using the $L/E$ parameter produces similar results to the methods used by the PROSPECT and the STEREO collaborations., Comment: 5 pages, 3 figures
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- 2020
443. Improved Short-Baseline Neutrino Oscillation Search and Energy Spectrum Measurement with the PROSPECT Experiment at HFIR
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Andriamirado, M., Balantekin, A. B., Band, H. R., Bass, C. D., Bergeron, D. E., Berish, D., Bowden, N. S., Brodsky, J. P., Bryan, C. D., Classen, T., Conant, A. J., Deichert, G., Diwan, M. V., Dolinski, M. J., Erickson, A., Foust, B. T., Gaison, J. K., Galindo-Uribarri, A., Gilbert, C. E., Goddard, B. W., Hackett, B. T., Hans, S., Hansell, A. B., Heeger, K. M., Heffron, B., Jaffe, D. E., Ji, X., Jones, D. C., Kyzylova, O., Lane, C. E., Langford, T. J., LaRosa, J., Littlejohn, B. R., Lu, X., Maricic, J., Mendenhall, M. P., Meyer, A. M., Milincic, R., Mitchell, I., Mueller, P. E., Mumm, H. P., Napolitano, J., Nave, C., Neilson, R., Nikkel, J. A., Norcini, D., Nour, S., Palomino, J. L., Pushin, D. A., Qian, X., Romero-Romero, E., Rosero, R., Surukuchi, P. T., Tyra, M. A., Varner, R. L., Venegas-Vargas, D., Weatherly, P. B., White, C., Wilhelmi, J., Woolverton, A., Yeh, M., Zhang, A., Zhang, C., and Zhang, X.
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High Energy Physics - Experiment ,Nuclear Experiment - Abstract
We present a detailed report on sterile neutrino oscillation and U-235 antineutrino energy spectrum measurement results from the PROSPECT experiment at the highly enriched High Flux Isotope Reactor (HFIR) at Oak Ridge National Laboratory. In 96 calendar days of data taken at an average baseline distance of 7.9 m from the center of the 85 MW HFIR core, the PROSPECT detector has observed more than 50,000 interactions of antineutrinos produced in beta decays of U-235 fission products. New limits on the oscillation of antineutrinos to light sterile neutrinos have been set by comparing the detected energy spectra of ten reactor-detector baselines between 6.7 and 9.2 meters. Measured differences in energy spectra between baselines show no statistically significant indication of antineutrinos to sterile neutrino oscillation and disfavor the Reactor Antineutrino Anomaly best-fit point at the 2.5$\sigma$ confidence level. The reported U-235 antineutrino energy spectrum measurement shows excellent agreement with energy spectrum models generated via conversion of the measured U-235 beta spectrum, with a $\chi^2$/DOF of 31/31. PROSPECT is able to disfavor at 2.4$\sigma$ confidence level the hypothesis that U-235 antineutrinos are solely responsible for spectrum discrepancies between model and data obtained at commercial reactor cores. A data-model deviation in PROSPECT similar to that observed by commercial core experiments is preferred with respect to no observed deviation, at a 2.2$\sigma$ confidence level., Comment: 42 pages, 52 Figures. Submitted to Phys. Rev. D. Supplementary Material Included
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- 2020
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444. A strontium optical lattice clock with $1 \times 10^{-17}$ uncertainty and measurement of its absolute frequency
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Hobson, Richard, Bowden, William, Silva, Alissa, Baynham, Charles F. A., Margolis, Helen S., Baird, Patrick E. G., Gill, Patrick, and Hill, Ian R.
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Physics - Atomic Physics - Abstract
We present a measurement of the absolute frequency of the 5s$^2$ $^1$S$_0$ to 5s5p $^3$P$_0$ transition in $^{87}$Sr, which is a secondary representation of the SI second. We describe the optical lattice clock apparatus used for the measurement, and we focus in detail on how its systematic frequency shifts are evaluated with a total fractional uncertainty of $1 \times 10^{-17}$. Traceability to the International System of Units is provided via comparison to International Atomic Time (TAI). Gathering data over 5- and 15-day periods, with the lattice clock operating on average 74$\%$ of the time, we measure the frequency of the transition to be 429228004229873.1(5) Hz, which corresponds to a fractional uncertainty of $1 \times 10^{-15}$. We describe in detail how this uncertainty arises from the intermediate steps linking the optical frequency standard, through our local time scale UTC(NPL), to an ensemble of primary and secondary frequency standards which steer TAI. The calculated absolute frequency of the transition is in good agreement with recent measurements carried out in other laboratories around the world.
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- 2020
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445. Progressive Transformers for End-to-End Sign Language Production
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Saunders, Ben, Camgoz, Necati Cihan, and Bowden, Richard
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computation and Language ,Computer Science - Machine Learning - Abstract
The goal of automatic Sign Language Production (SLP) is to translate spoken language to a continuous stream of sign language video at a level comparable to a human translator. If this was achievable, then it would revolutionise Deaf hearing communications. Previous work on predominantly isolated SLP has shown the need for architectures that are better suited to the continuous domain of full sign sequences. In this paper, we propose Progressive Transformers, a novel architecture that can translate from discrete spoken language sentences to continuous 3D skeleton pose outputs representing sign language. We present two model configurations, an end-to-end network that produces sign direct from text and a stacked network that utilises a gloss intermediary. Our transformer network architecture introduces a counter that enables continuous sequence generation at training and inference. We also provide several data augmentation processes to overcome the problem of drift and improve the performance of SLP models. We propose a back translation evaluation mechanism for SLP, presenting benchmark quantitative results on the challenging RWTH-PHOENIX-Weather-2014T(PHOENIX14T) dataset and setting baselines for future research.
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- 2020
446. Sign Language Transformers: Joint End-to-end Sign Language Recognition and Translation
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Camgoz, Necati Cihan, Koller, Oscar, Hadfield, Simon, and Bowden, Richard
- Subjects
Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Computation and Language ,Computer Science - Human-Computer Interaction ,Computer Science - Machine Learning - Abstract
Prior work on Sign Language Translation has shown that having a mid-level sign gloss representation (effectively recognizing the individual signs) improves the translation performance drastically. In fact, the current state-of-the-art in translation requires gloss level tokenization in order to work. We introduce a novel transformer based architecture that jointly learns Continuous Sign Language Recognition and Translation while being trainable in an end-to-end manner. This is achieved by using a Connectionist Temporal Classification (CTC) loss to bind the recognition and translation problems into a single unified architecture. This joint approach does not require any ground-truth timing information, simultaneously solving two co-dependant sequence-to-sequence learning problems and leads to significant performance gains. We evaluate the recognition and translation performances of our approaches on the challenging RWTH-PHOENIX-Weather-2014T (PHOENIX14T) dataset. We report state-of-the-art sign language recognition and translation results achieved by our Sign Language Transformers. Our translation networks outperform both sign video to spoken language and gloss to spoken language translation models, in some cases more than doubling the performance (9.58 vs. 21.80 BLEU-4 Score). We also share new baseline translation results using transformer networks for several other text-to-text sign language translation tasks.
- Published
- 2020
447. DeFeat-Net: General Monocular Depth via Simultaneous Unsupervised Representation Learning
- Author
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Spencer, Jaime, Bowden, Richard, and Hadfield, Simon
- Subjects
Computer Science - Computer Vision and Pattern Recognition - Abstract
In the current monocular depth research, the dominant approach is to employ unsupervised training on large datasets, driven by warped photometric consistency. Such approaches lack robustness and are unable to generalize to challenging domains such as nighttime scenes or adverse weather conditions where assumptions about photometric consistency break down. We propose DeFeat-Net (Depth & Feature network), an approach to simultaneously learn a cross-domain dense feature representation, alongside a robust depth-estimation framework based on warped feature consistency. The resulting feature representation is learned in an unsupervised manner with no explicit ground-truth correspondences required. We show that within a single domain, our technique is comparable to both the current state of the art in monocular depth estimation and supervised feature representation learning. However, by simultaneously learning features, depth and motion, our technique is able to generalize to challenging domains, allowing DeFeat-Net to outperform the current state-of-the-art with around 10% reduction in all error measures on more challenging sequences such as nighttime driving.
- Published
- 2020
448. Same Features, Different Day: Weakly Supervised Feature Learning for Seasonal Invariance
- Author
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Spencer, Jaime, Bowden, Richard, and Hadfield, Simon
- Subjects
Computer Science - Computer Vision and Pattern Recognition - Abstract
"Like night and day" is a commonly used expression to imply that two things are completely different. Unfortunately, this tends to be the case for current visual feature representations of the same scene across varying seasons or times of day. The aim of this paper is to provide a dense feature representation that can be used to perform localization, sparse matching or image retrieval, regardless of the current seasonal or temporal appearance. Recently, there have been several proposed methodologies for deep learning dense feature representations. These methods make use of ground truth pixel-wise correspondences between pairs of images and focus on the spatial properties of the features. As such, they don't address temporal or seasonal variation. Furthermore, obtaining the required pixel-wise correspondence data to train in cross-seasonal environments is highly complex in most scenarios. We propose Deja-Vu, a weakly supervised approach to learning season invariant features that does not require pixel-wise ground truth data. The proposed system only requires coarse labels indicating if two images correspond to the same location or not. From these labels, the network is trained to produce "similar" dense feature maps for corresponding locations despite environmental changes. Code will be made available at: https://github.com/jspenmar/DejaVu_Features
- Published
- 2020
449. Nonfuel Antineutrino Contributions in the High Flux Isotope Reactor
- Author
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Balantekin, A. B., Band, H. R., Bass, C. D., Bergeron, D. E., Berish, D., Bowden, N. S., Brodsky, J. P., Bryan, C. D., Classen, T., Conant, A. J., Deichert, G., Diwan, M. V., Dolinski, M. J., Erickson, A., Foust, B. T., Gaison, J. K., Galindo-Uribarri, A., Gilbert, C. E., Hans, B. T. Hackett S., Hansell, A. B., Heeger, K. M., Jaffe, B. Heffron D. E., Ji, X., Jones, D. C., Kyzylova, O., Lane, C. E., Langford, T. J., LaRosa, J., Littlejohn, B. R., Lu, X., Maricic, J., Mendenhall, M. P., Milincic, R., Mitchell, I., Mueller, P. E., Mumm, H. P., Napolitano, J., Neilson, R., Nikkel, J. A., Norcini, D., Nour, S., Palomino-Gallo, J. L., Pushin, D. A., Qian, X., Romero-Romero, E., Rosero, R., Surukuchi, P. T., Tyra, M. A., Varner, R. L., White, C., Wilhelmi, J., Woolverton, A., Yeh, M., Zhang, A., Zhang, C., and Zhang, X.
- Subjects
Nuclear Experiment ,High Energy Physics - Experiment - Abstract
Reactor neutrino experiments have seen major improvements in precision in recent years. With the experimental uncertainties becoming lower than those from theory, carefully considering all sources of $\overline{\nu}_{e}$ is important when making theoretical predictions. One source of $\overline{\nu}_{e}$ that is often neglected arises from the irradiation of the nonfuel materials in reactors. The $\overline{\nu}_{e}$ rates and energies from these sources vary widely based on the reactor type, configuration, and sampling stage during the reactor cycle and have to be carefully considered for each experiment independently. In this article, we present a formalism for selecting the possible $\overline{\nu}_{e}$ sources arising from the neutron captures on reactor and target materials. We apply this formalism to the High Flux Isotope Reactor (HFIR) at Oak Ridge National Laboratory, the $\overline{\nu}_{e}$ source for the the Precision Reactor Oscillation and Spectrum Measurement (PROSPECT) experiment. Overall, we observe that the nonfuel $\overline{\nu}_{e}$ contributions from HFIR to PROSPECT amount to 1\% above the inverse beta decay threshold with a maximum contribution of 9\% in the 1.8--2.0~MeV range. Nonfuel contributions can be particularly high for research reactors like HFIR because of the choice of structural and reflector material in addition to the intentional irradiation of target material for isotope production. We show that typical commercial pressurized water reactors fueled with low-enriched uranium will have significantly smaller nonfuel $\overline{\nu}_{e}$ contribution.
- Published
- 2020
- Full Text
- View/download PDF
450. Risk factors for human papillomavirus infection, cervical intraepithelial neoplasia and cervical cancer: an umbrella review and follow-up Mendelian randomisation studies
- Author
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Bowden, Sarah J., Doulgeraki, Triada, Bouras, Emmanouil, Markozannes, Georgios, Athanasiou, Antonios, Grout-Smith, Harriet, Kechagias, Konstantinos S., Ellis, Laura Burney, Zuber, Verena, Chadeau-Hyam, Marc, Flanagan, James M., Tsilidis, Konstantinos K., Kalliala, Ilkka, and Kyrgiou, Maria
- Published
- 2023
- Full Text
- View/download PDF
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