184 results on '"Wang, Qigui"'
Search Results
152. Abnormal macrosegregation induced by formed porosity during solidification of an Al–Sn alloy
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Zhao, Lei, primary, Liao, Hengcheng, additional, Pan, Ye, additional, Wang, Lin, additional, and Wang, Qigui, additional
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- 2011
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153. Adipocyte fatty acid-binding protein: An important gene related to lipid metabolism in chicken adipocytes
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Shi, Hui, primary, Wang, Qigui, additional, Wang, Yuxiang, additional, Leng, Li, additional, Zhang, Qingqiu, additional, Shang, Zhouchun, additional, and Li, Hui, additional
- Published
- 2010
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154. An experimental study of heat transfer in aluminum castings during water quenching
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Xiao, Bowang, primary, Wang, Qigui, additional, Jadhav, Parag, additional, and Li, Keyu, additional
- Published
- 2010
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155. An Experimental Study of Heat Transfer During Forced Air Convection
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Xiao, Bowang, primary, Wang, Gang, additional, Wang, Qigui, additional, Maniruzzaman, Mohammed, additional, Sisson, Richard D., additional, and Rong, Yiming, additional
- Published
- 2010
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156. A Single Nucleotide Polymorphism of Chicken Acetyl-CoA Carboxylase A Gene Associated with Fatness Traits
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Tian, Jianwei, primary, Wang, Shouzhi, additional, Wang, Qigui, additional, Leng, Li, additional, Hu, Xiaoxiang, additional, and Li, Hui, additional
- Published
- 2009
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157. A novel polymorphism in the chicken adipocyte fatty acid-binding protein gene (FABP4) that alters ligand-binding and correlates with fatness
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Wang, Qigui, primary, Guan, Tianzhu, additional, Li, Hui, additional, and Bernlohr, David A., additional
- Published
- 2009
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158. Microsatellite Markers Linked to Quantitative Trait Loci Affecting Fatness in Divergently Selected Chicken Lines for Abdominal Fat
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Zhang, Hui, primary, Wang, Shouzhi, additional, Li, Hui, additional, Yu, Xijiang, additional, Li, Ning, additional, Zhang, Qin, additional, Liu, Xiaofeng, additional, Wang, Qigui, additional, Hu, Xiaoxiang, additional, Wang, Yuxiang, additional, and Tang, Zhiquan, additional
- Published
- 2008
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159. Residual Stresses in As-Quenched Aluminum Castings
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Li, Keyu, primary, Xiao, Bowang, additional, and Wang, Qigui, additional
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- 2008
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160. Polymorphism of Heart Fatty Acid-Binding Protein Gene Associatied with Fatness Traits in the Chicken
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Wang, Qigui, primary, Li, Hui, additional, Leng, Li, additional, Wang, Yuxiang, additional, Tang, Zhiquan, additional, Li, Ning, additional, and Zhang, Fuchun, additional
- Published
- 2007
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161. Analysis on Association of a SNP in the Chicken OBR Gene with Growth and Body Composition Traits
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Wang, Ying, primary, Li, Hui, additional, Zhang, YuanDan, additional, Gu, ZhiLiang, additional, Li, ZhiHui, additional, and Wang, QiGui, additional
- Published
- 2006
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162. Cloning and Tissue Expression of Chicken Heart Fatty Acid-Binding Protein and Intestine Fatty Acid-Binding Protein Genes
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Wang, Qigui, primary, Li, Hui, additional, Liu, Shuang, additional, Wang, Guihua, additional, and Wang, Yuxiang, additional
- Published
- 2005
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163. Cloning and Characterization of Chicken Adipocyte Fatty Acid Binding Protein Gene
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Wang, Qigui, primary, Li, Hui, additional, Li, Ning, additional, Gu, Zhiliang, additional, and Wang, Yuxiang, additional
- Published
- 2004
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164. Cloning, sequencing and phylogenic analysis of duck prion gene
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Wang, Qigui, primary, Zhang, Lei, additional, Hu, Xiaoxiang, additional, Fan, Baoliang, additional, Li, Ning, additional, Li, Hui, additional, and Wu, Changxin, additional
- Published
- 2004
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165. Effect of Sr content on porosity formation in directionally solidified Al-12.3wt.%Si alloy.
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Liao Hengcheng, Wu Yuna, Fan Ran, and Wang Qigui
- Subjects
STRONTIUM ,X-ray detection ,POROSITY ,NUCLEATION ,HYDROGEN ,SOLIDIFICATION - Abstract
The influence of Sr addition on pore formation in directionally solidified Al-12.3wt.% alloy was investigated using X-ray detection, optical microscope, and SEM-EDX. Results indicate that addition of Sr significantly increases the number density and volume fraction of porosity. The considerable rise in volume fraction of porosity is attributed to the remarkable increase in the numbers of pores formed. It is found that Sr solute in liquid Al-Si alloy can diffuse into the oxide inclusions to form loose oxide aggregations which have more activity as the nucleation sites for porosity. Adding more Sr considerably increases the numbers of active nucleation sites. There is an obvious fluctuation of pore number density during steady state solidification, which is believed to be related to a fluctuation of local hydrogen supersaturation induced by the competition of pore nucleation and growth for hydrogen solute supplement. [ABSTRACT FROM AUTHOR]
- Published
- 2014
166. Comprehensive analysis of Sichuan white geese ( Anser cygnoides) transcriptome.
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Ding, Ning, Han, Qing, Li, Qin, Zhao, Xianzhi, Li, Jing, Su, Jian, and Wang, Qigui
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SWAN goose ,RNA sequencing ,ANTISENSE DNA ,GENITALIA ,HYPOTHALAMUS ,GENE ontology - Abstract
High-throughput RNA sequencing was performed for comprehensively analyzing the transcriptome of geese. A total of 28 803 759 bp of raw sequence data was generated by 454 GS Flx+. After removal of adaptor sequences, 28 730 361 bp remained and 117 279 reads were obtained, with an average length of 244 bases. Simultaneously, complementary DNA samples from two different reproductive stages of goose ovarian, hypothalamus and pituitary tissue were sequenced separately using Illumina MiSeq platform. A total of 12 688 673 148 bp of raw sequence data were generated by Illumina MiSeq. After removal of adaptor sequences, 8 198 126 562 bp remained and 60 382 786 clean reads were obtained, with an average length of 135 bases. Assembly of all the reads from both 454 Flx+ and Illumina platforms formed 56 839 contigs. The sequence size ranges from 38 to 28 206 bp in size, with an average size of 2584 bp and an N50 of 4624. The assembly produced a substantial number of large contigs: 35 545 (62.5%) were longer than 1 kb, of which 8850 (15.6%) were longer than 5 kb. The sequencing depth was 85 X on average. We performed comprehensive function annotations on unigenes including protein sequence similarity, gene ontology ( GO) term classification, and Kyoto Encylcopedia of Genes and Genomes ( KEGG) pathway enrichment. GO analysis showed that approximately 63% of the contigs had annotation information, among the 35 953 annotated isotigs in Nr database, 24 783 (68.9%) sequences were assigned with one or more GO terms. There were 14 634 (40.7%) isotigs for biological processes, 10 557(29.3%) isotigs for cellular component, 22 607 (62.9%) isotigs for molecular function. The result of KEGG pathway mapping 8926 sequences had the pathway annotation, and took part in 477 pathways. Additionally, 10 685 simple sequence repeat ( SSR) markers were identified from the assembled sequences. The most frequent repeat motifs were trinucleotides, which accounted for 53.03% of all SSRs, followed by dinucleotides (39.9%), tetranucleotides (5.08%), pentanucleotides (1.68%) and hexanucleotides (0.32%). Transcriptome sequencing on mixture issue of the geese yielded substantial transcriptional sequences and potentially useful SSR markers which provide an important data source for geese research. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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167. A Single Nucleotide Polymorphism of Chicken Acetyl-CoA Carboxylase A Gene Associated with Fatness Traits.
- Author
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Tian, Jianwei, Wang, Shouzhi, Wang, Qigui, Leng, Li, Hu, Xiaoxiang, and Li, Hui
- Subjects
OBESITY genetics ,NUCLEOTIDES ,GENETIC polymorphisms ,ACETYLCOENZYME A ,GENES - Abstract
Acetyl-CoA carboxylase α (ACCα) is a major rate-limiting enzyme in the biogenesis of long-chain fatty acids. It can catalyze the carboxylation of acetyl-CoA to form malonyl-CoA that plays a key role in the regulation of fatty acid metabolism. The objective of the present study was to investigate the associations of ACCα gene polymorphisms with chicken growth and body composition traits. The Northeast Agricultural University broiler lines divergently selected for abdominal fat content and the Northeast Agricultural University F2 Resource Population were used in the current study. Body weight and body composition traits were measured in the aforementioned two populations. A synonymous mutation was detected in the exon 19 region of ACCα gene, then polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method was developed to genotype all the individuals derived from the aforementioned populations. Association analysis revealed that the polymorphism was associated with abdominal fat weight and percentage of abdominal fat in the two populations. The results suggested that ACCα gene could be a candidate locus or linked to a major gene that affects abdominal fat content in the chicken. [ABSTRACT FROM AUTHOR]
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- 2010
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168. Single nucleotide polymorphism analysis of the encoding region of EX-FABP gene and its association with fattiness trait in chicken.
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Wang Qigui, Li Ning, Hu Xiaoxiang, Deng Xuemei, Lian Zhengxing, Li Hui, and Wu Changxin
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NUCLEOTIDES , *GENETIC polymorphisms , *CHICKENS , *CARRIER proteins - Abstract
Examines the single nucleotide polymorphism analysis of the encoding region of extracellular fatty acid binding protein gene in chicken. Amplification of exons and partial introns of the gene; Variations of nucleotides found in the chicken; Definition of chickens with HH genotype.
- Published
- 2002
169. Non-proportionally multiaxial fatigue behavior of A319 casting alloy: effects of strontium addition and hot isostatic pressing.
- Author
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Zhang Chen, Liu Xiaoshan, He Guoqiu, Weng Zhenzhen, Dai Liquan, Peiwen Le, Bin Ge, Wang Qigui, and He Qiao
- Published
- 2019
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170. Three-dimensional thermosolutal simulation of dendritic and eutectic growth.
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Zhang, Ang, Du, Jinglian, Meng, Shaoxing, Liu, Fengyuan, Guo, Zhipeng, Wang, Qigui, and Xiong, Shoumei
- Subjects
- *
SOLIDIFICATION , *LATTICE Boltzmann methods , *CRYSTAL growth , *LATENT heat , *CRYSTAL lattices , *EUTECTICS - Abstract
• Three-dimensional thermosolutal crystal growth including dendrite and eutectic. • Effect of release of latent heat on crystal pattern transition. • Effect of boundary condition on crystal pattern transition. • Morphological difference between dendrite and eutectic. Numerical simulation on the thermosolutal crystal growth is challenging because of multiscale nature. In this work, three-dimensional (3D) thermosolutal dendritic and eutectic growth are simulated by a phase-field lattice-Boltzmann approach. The phase-field model is used to simulate the crystal growth and the lattice Boltzmann method is employed to determine the thermal evolution. Results show that the temperature obtains the extreme at the solid/liquid interface due to the release of latent heat, which increases local temperature and alters crystal growth velocity. The thermal distribution during dendrite growth is unevenly distributed inside the domain, while that during eutectic solidification becomes uniform along the direction parallel to the growth front. Crystal growth under different boundary conditions is also discussed. The 3D crystal simulations demonstrate the feasibility of the present numerical scheme in modeling thermosolutal interaction during solidification. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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171. Phase-field lattice-Boltzmann study on eutectic growth with coupled heat and solute diffusion.
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Zhang, Ang, Liu, Fengyuan, Du, Jinglian, Guo, Zhipeng, Wang, Qigui, and Xiong, Shoumei
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DIFFUSION , *LATENT heat , *CONTACT angle , *HEAT , *EUTECTIC reactions , *PHASE transitions , *EUTECTICS - Abstract
• Thermosolutal eutectic phase transition in both 2D and 3D cases. • A multilevel numerical approach to solve the thermosolutal eutectic growth. • Validation by both thermal evaluation and contact angle between interfaces. • Effect of both released latent heat and heat sink on eutectic growth. • Prospect on eutectic growth with a larger Lewis number (e.g., 106). The thermosolutal interaction influences eutectic evolution and thus properties of solidified materials. Limited by numerical capability, however, very few studies are performed on the eutectic growth with coupled heat and solute diffusion. Combining the phase-field lattice-Boltzmann approach and a parallel-adaptive mesh refinement algorithm, a novel numerical scheme is developed to efficiently simulate the thermosolutal multiphase eutectic evolution. The contact angles at the triple point agree well with the analytical solution, and the temperature always obtains the local extreme at the solid/liquid interface due to the release of latent heat. The effects of the Lewis number and imposed heat sink on the eutectic evolution are discussed in detail, which includes the change of the lamellar growth velocity and the form of lamellae creation. The dimension is further extended to 3D to investigate the evolution of plate- and rod-like eutectics. How to simulate eutectic evolution with a larger Lewis number (e.g., 106) and how to develop a more general eutectic model are also discussed. As the first attempt to solve the thermosolutal eutectic evolution, our investigation paves a way for further quantitative analysis and direct comparison with experiments. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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172. Detection of Avian Leukosis Virus Subgroup J (ALV-J) Using RAA and CRISPR-Cas13a Combined with Fluorescence and Lateral Flow Assay.
- Author
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Chen S, Li Y, Liao R, Liu C, Zhou X, Wang H, Wang Q, and Lan X
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- Animals, Nucleic Acid Amplification Techniques methods, Chickens virology, Sensitivity and Specificity, Poultry Diseases virology, Poultry Diseases diagnosis, Molecular Diagnostic Techniques methods, Avian Leukosis Virus genetics, Avian Leukosis Virus isolation & purification, CRISPR-Cas Systems, Avian Leukosis diagnosis, Avian Leukosis virology
- Abstract
Avian Leukosis Virus (ALV) is a retrovirus that induces immunosuppression and tumor formation in poultry, posing a significant threat to the poultry industry. Currently, there are no effective vaccines or treatments for ALV. Therefore, the early diagnosis of infected flocks and farm sanitation are crucial for controlling outbreaks of this disease. To address the limitations of traditional diagnostic methods, which require sophisticated equipment and skilled personnel, a dual-tube detection method for ALV-J based on reverse transcription isothermal amplification (RAA) and the CRISPR-Cas13a system has been developed. This method offers the advantages of high sensitivity, specificity, and rapidity; it is capable of detecting virus concentrations as low as 5.4 × 10
0 copies/μL without cross-reactivity with other avian viruses, with a total testing time not exceeding 85 min. The system was applied to 429 clinical samples, resulting in a positivity rate of 15.2% for CRISPR-Cas13a, which was higher than the 14.7% detected by PCR and 14.2% by ELISA, indicating superior detection capability and consistency. Furthermore, the dual-tube RAA-CRISPR detection system provides visually interpretable results, making it suitable for on-site diagnosis in remote farms lacking laboratory facilities. In conclusion, the proposed ALV-J detection method, characterized by its high sensitivity, specificity, and convenience, is expected to be a vital technology for purification efforts against ALV-J., Competing Interests: The authors declare no conflict of interest.- Published
- 2024
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173. Mechanisms of Rho GTPases in regulating tumor proliferation, migration and invasion.
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Liu C, Chen S, Zhang Y, Zhou X, Wang H, Wang Q, and Lan X
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The occurrence of most cancers is due to the clonal proliferation of tumor cells, immune evasion, and the ability to spread to other body parts. Rho GTPases, a family of small GTPases, are key regulators of cytoskeleton reorganization and cell polarity. Additionally, Rho GTPases are key proteins that induce the proliferation and metastasis of tumor cells. This review focuses on the complex regulatory mechanisms of Rho GTPases, exploring their critical role in promoting tumor cell proliferation and dissemination. Regarding tumor cell proliferation, attention is given to the role of Rho GTPases in regulating the cell cycle and mitosis. In terms of tumor cell dissemination, the focus is on the role of Rho GTPases in regulating cell migration and invasion. Overall, this review elucidates the mechanisms of Rho GTPases members in the development of tumor cells, aiming to provide theoretical references for the treatment of mammalian tumor diseases and related applications., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
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- 2024
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174. Multiomics analyses reveal high yield-related genes in the hypothalamic-pituitary-ovarian/liver axis of chicken.
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Shi J, Xiong H, Su J, Wang Q, Wang H, Yang C, Hu C, Cui Z, and Liu L
- Abstract
Egg production, regulated by multiple tissues, is among the most important economic traits in poultry. However, current research only focuses on the hypothalamic-pituitary-ovarian axis, ignoring the most important organ for substance metabolism in the body, the liver. Eggs are rich in lipids, proteins, and other nutrients, which are biosynthesized in the liver. Therefore, here the liver was included in the study of the hypothalamic-pituitary axis. This study used hypothalamus (HH_vs_LH), pituitary (HP_vs_LP), liver (HL_vs_LL), and ovary (HO_vs_LO) tissue samples from high- and low-laying Chengkou mountain chickens (CMC) for epihistological, transcriptome and metabolomic analyses aimed at improving the reproductive performance of CMC. The results showed that the liver of the high-laying group was yellowish, the cell boundary was clear, and the lipid droplets were evenly distributed. The ovaries of the high-laying group had a complete sequence of hierarchical follicles, which were rich in yolk. In contrast, the ovaries of the low-laying group were atrophic, except for a few small yellow follicles, and numerous primordial follicles that remained. The transcriptome sequences yielded 167.11 Gb of clean data, containing 28,715 genes. Furthermore, 285, 822, 787, and 1,183 differentially expressed genes (DEG) were identified in HH_vs_LH, HP_vs_LP, HL_vs_LL and HO_vs_LO and the DEGs significantly enriched 77, 163, 170, 171 pathways, respectively. Metabolome sequencing yielded 21,808 peaks containing 4,006 metabolites. The differential metabolite analysis yielded 343 and 682 significantly different metabolites (SDM) that significantly enriched 136 and 87 pathways in the liver and ovaries, respectively. A combined analysis of the transcriptome and metabolome of the liver and ovaries identified "CYP51A1-4α-carboxy-stigmasta7, 24(24(1))-dien-3β-ol" and "ACSS1B-estrone 3-sulfate" and other multiple gene-metabolite pairs. The DEGs in the hypothalamus and pituitary mainly enriched signaling transduction. In contrast, the DEGs and SDMs in the liver and ovaries mainly enriched the substance metabolism pathways: "gap junction", "extracellular matrix (ECM)-receptor interaction", "Steroid biosynthesis", and "Steroid hormone biosynthesis". These results suggest that the hypothalamic-pituitary axis may affect egg production mainly by regulating lipid metabolism in the liver and ovaries., Competing Interests: DISCLOSURES Authors have no conflict of interest to declare., (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2024
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175. Genome-wide characteristics and potential functions of circular RNAs from the embryo muscle development in Chengkou mountain chicken.
- Author
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Zhang Y, Wang H, Li X, Yang C, Yu C, Cui Z, Liu A, Wang Q, and Liu L
- Abstract
The Chengkou mountain chicken, a native Chinese poultry breed, holds significant importance in the country's poultry sector due to its delectable meat and robust stress tolerance. Muscle growth and development are pivotal characteristics in poultry breeding, with muscle fiber development during the embryonic period crucial for determining inherent muscle growth potential. Extensive evidence indicates that non-coding RNAs (ncRNAs) play a regulatory role in muscle growth and development. Among ncRNAs, circular RNAs (circRNAs), characterized by a closed-loop structure, have been shown to modulate biological processes through the regulation of microRNAs (miRNAs). This study seeks to identify and characterize the spatiotemporal-specific expression of circRNAs during embryonic muscle development in Chengkou mountain chicken, and to construct the potential regulatory network of circRNAs-miRNA-mRNAs. The muscle fibers of HE-stained sections became more distinct, and their boundaries were more defined over time. Subsequent RNA sequencing of 12 samples from four periods generated 9,904 novel circRNAs, including 917 differentially expressed circRNAs. The weighted gene co-expression network analysis (WGCNA)-identified circRNA source genes significantly enriched pathways related to cell fraction, cell growth, and muscle fiber growth regulation. Furthermore, a competitive endogenous RNA (ceRNA) network constructed using combined data of present and previous differentially expressed circRNAs, miRNA, and mRNA revealed that several circRNA transcripts regulate MYH1D , MYH1B , CAPZA1 , and PERM1 proteins. These findings provide insight into the potential pathways and mechanisms through which circRNAs regulate embryonic muscle development in poultry, a theoretical support for trait improvement in domestic chickens., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Zhang, Wang, Li, Yang, Yu, Cui, Liu, Wang and Liu.)
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- 2024
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176. Exploring the dynamic three-dimensional chromatin architecture and transcriptional landscape in goose liver tissues underlying metabolic adaptations induced by a high-fat diet.
- Author
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Gao G, Liu R, Hu S, He M, Zhang J, Gao D, Li J, Hu J, Wang J, Wang Q, Li M, and Jin L
- Abstract
Background: Goose, descendants of migratory ancestors, have undergone extensive selective breeding, resulting in their remarkable ability to accumulate fat in the liver and exhibit a high tolerance for significant energy intake. As a result, goose offers an excellent model for studying obesity, metabolic disorders, and liver diseases in mammals. Although the impact of the three-dimensional arrangement of chromatin within the cell nucleus on gene expression and transcriptional regulation is widely acknowledged, the precise functions of chromatin architecture reorganization during fat deposition in goose liver tissues still need to be fully comprehended., Results: In this study, geese exhibited more pronounced changes in the liver index and triglyceride (TG) content following the consumption of the high-fat diet (HFD) than mice without significant signs of inflammation. Additionally, we performed comprehensive analyses on 10 goose liver tissues (5 HFD, 5 normal), including generating high-resolution maps of chromatin architecture, conducting whole-genome gene expression profiling, and identifying H3K27ac peaks in the livers of geese and mice subjected to the HFD. Our results unveiled a multiscale restructuring of chromatin architecture, encompassing Compartment A/B, topologically associated domains, and interactions between promoters and enhancers. The dynamism of the three-dimensional genome architecture, prompted by the HFD, assumed a pivotal role in the transcriptional regulation of crucial genes. Furthermore, we identified genes that regulate chromatin conformation changes, contributing to the metabolic adaptation process of lipid deposition and hepatic fat changes in geese in response to excessive energy intake. Moreover, we conducted a cross-species analysis comparing geese and mice exposed to the HFD, revealing unique characteristics specific to the goose liver compared to a mouse. These chromatin conformation changes help elucidate the observed characteristics of fat deposition and hepatic fat regulation in geese under conditions of excessive energy intake., Conclusions: We examined the dynamic modifications in three-dimensional chromatin architecture and gene expression induced by an HFD in goose liver tissues. We conducted a cross-species analysis comparing that of mice. Our results contribute significant insights into the chromatin architecture of goose liver tissues, offering a novel perspective for investigating mammal liver diseases., (© 2024. The Author(s).)
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- 2024
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177. Modulation of Performance, Plasma Constituents, Small Intestinal Morphology, and Cecum Microbiota in Growing Geese by Dietary Citric Acid Supplementation.
- Author
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Zhang Y, Xue J, Chen Y, Huang X, Liu Z, Zhong H, Xie Q, Luo Y, Wang Q, and Wang C
- Abstract
To investigate the efficiency and optimum inclusion level of CA in growing geese diets on performance, plasma constituents, and intestinal health, 240 healthy female geese at the age of 28d were randomly allotted six treatment diets incorporated with 0, 0.8, 1.6, 2.4, 3.2, and 4% CA. Each treatment group consisted of five replicates and eight birds per replicate. The findings demonstrated that 3.2% CA supplementation resulted in improved growth performance (ADG, ADFI, and FBW) ( p = 0.001), and geese who received CA also showed lower body fat contents ( p < 0.05) than the control group. Moreover, geese from the 2.4% and 3.2% CA group had the highest plasma glutathione peroxidase and insulin-like growth factor 1 levels compared to the other groups ( p < 0.05). A microbial diversity analysis of the cecum conducted by 16S rDNA sequencing revealed that 3.2% CA supplementation showed a significantly higher abundance of beneficial bacteria ( Muribaculaceae , CHKCI001 , Erysipelotricha-ceae_UCG_003 , and UCG_009 ) ( p < 0.05) and a lower abundance of harmful bacteria ( Atopobiaceae , Streptococcus , Acinetobacter , Pseudomonas , and Alistipes ) ( p < 0.10). Collectively, our results revealed that dietary supplementation with 3.2% CA had several benefits on the performance and physiological health of growing geese by promoting nutrients metabolism, improving antioxidant capacity, and modulating cecum microbiota.
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- 2024
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178. Effects of Heat Stress and Lipopolysaccharides on Gene Expression in Chicken Immune Cells.
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Yang G, Zhou X, Chen S, Liu A, Liu L, Wang H, Wang Q, and Lan X
- Abstract
Prolonged exposure to high temperatures and humidity can trigger heat stress in animals, leading to subsequent immune suppression. Lipopolysaccharides (LPSs) act as upstream regulators closely linked to heat stress, contributing to their immunosuppressive effects. After an initial examination of transcriptome sequencing data from individual samples, 48 genes displaying interactions were found to potentially be associated with heat stress. Subsequently, to delve deeper into this association, we gathered chicken bone marrow dendritic cells (BMDCs). We combined heat stress with lipopolysaccharides and utilized a 48 × 48 Fluidigm IFC quantitative microarray to analyze the patterns of gene changes under various treatment conditions. The results of the study revealed that the combination of heat stress and LPSs in a coinfection led to reduced expressions of CRHR1 , MEOX1 , and MOV10L1 . These differentially expressed genes triggered a pro-inflammatory response within cells via the MAPK and IL-17 signaling pathways. This response, in turn, affected the intensity and duration of inflammation when experiencing synergistic stimulation. Therefore, LPSs exacerbate the immunosuppressive effects of heat stress and prolong cellular adaptation to stress. The combination of heat stress and LPS stimulation induced a cellular inflammatory response through pathways involving cAMP, IL-17, MAPK, and others, consequently leading to decreased expression levels of CRHR1 , MEOX1 , and MOV10L1 .
- Published
- 2024
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179. Insights into genetic diversity and phenotypic variations in domestic geese through comprehensive population and pan-genome analysis.
- Author
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Gao G, Zhang H, Ni J, Zhao X, Zhang K, Wang J, Kong X, and Wang Q
- Abstract
Background: Domestic goose breeds are descended from either the Swan goose (Anser cygnoides) or the Greylag goose (Anser anser), exhibiting variations in body size, reproductive performance, egg production, feather color, and other phenotypic traits. Constructing a pan-genome facilitates a thorough identification of genetic variations, thereby deepening our comprehension of the molecular mechanisms underlying genetic diversity and phenotypic variability., Results: To comprehensively facilitate population genomic and pan-genomic analyses in geese, we embarked on the task of 659 geese whole genome resequencing data and compiling a database of 155 RNA-seq samples. By constructing the pan-genome for geese, we generated non-reference contigs totaling 612 Mb, unveiling a collection of 2,813 novel genes and pinpointing 15,567 core genes, 1,324 softcore genes, 2,734 shell genes, and 878 cloud genes in goose genomes. Furthermore, we detected an 81.97 Mb genomic region showing signs of genome selection, encompassing the TGFBR2 gene correlated with variations in body weight among geese. Genome-wide association studies utilizing single nucleotide polymorphisms (SNPs) and presence-absence variation revealed significant genomic associations with various goose meat quality, reproductive, and body composition traits. For instance, a gene encoding the SVEP1 protein was linked to carcass oblique length, and a distinct gene-CDS haplotype of the SVEP1 gene exhibited an association with carcass oblique length. Notably, the pan-genome analysis revealed enrichment of variable genes in the "hair follicle maturation" Gene Ontology term, potentially linked to the selection of feather-related traits in geese. A gene presence-absence variation analysis suggested a reduced frequency of genes associated with "regulation of heart contraction" in domesticated geese compared to their wild counterparts. Our study provided novel insights into gene expression features and functions by integrating gene expression patterns across multiple organs and tissues in geese and analyzing population variation., Conclusion: This accomplishment originates from the discernment of a multitude of selection signals and candidate genes associated with a wide array of traits, thereby markedly enhancing our understanding of the processes underlying domestication and breeding in geese. Moreover, assembling the pan-genome for geese has yielded a comprehensive apprehension of the goose genome, establishing it as an indispensable asset poised to offer innovative viewpoints and make substantial contributions to future geese breeding initiatives., (© 2023. The Author(s).)
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- 2023
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180. Identification of SNPs Associated with Goose Meat Quality Traits Using a Genome-Wide Association Study Approach.
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Gao G, Zhang K, Huang P, Zhao X, Li Q, Xie Y, Yin C, Li J, Wang Z, Zhong H, Xue J, Chen Z, Wu X, and Wang Q
- Abstract
(1) Background: Goose meat is highly valued for its economic significance and vast market potential due to its desirable qualities, including a rich nutritional profile, tender texture, relatively low-fat content, and high levels of beneficial unsaturated fatty acids. However, there is an urgent need to improve goose breeding by identifying molecular markers associated with meat quality. (2) Methods: We evaluated meat quality traits, such as meat color, shear force (SF), cooking loss rate (CLR), and crude fat content (CFC), in a population of 215 male Sichuan white geese at 70 days of age. A GWAS was performed to identify potential molecular markers associated with goose meat quality. Furthermore, the selected SNPs linked to meat quality traits were genotyped using the MALDI-TOP MS method. (3) Results: A dataset of 2601.19 Gb of WGS data was obtained from 215 individuals, with an average sequencing depth of 10.89×. The GWAS revealed the identification of 43 potentially significant SNP markers associated with meat quality traits in the Sichuan white goose population. Additionally, 28 genes were identified as important candidate genes for meat quality. The gene enrichment analysis indicated a substantial enrichment of genes within a 1Mb vicinity of SNPs in both the protein digestion and absorption pathway and the Glycerolipid metabolism pathway. (4) Conclusion: This study provides valuable insights into the genetic and molecular mechanisms underlying goose meat quality traits, offering crucial references for molecular breeding in this field.
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- 2023
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181. Transcriptome analysis of embryonic muscle development in Chengkou Mountain Chicken.
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Ren L, Liu A, Wang Q, Wang H, Dong D, and Liu L
- Subjects
- Animals, Embryonic Development genetics, Gene Expression Profiling, Muscle Development genetics, Phosphatidylinositol 3-Kinases, Chickens genetics, Transcriptome
- Abstract
Background: Muscle is the predominant portion of any meat product, and growth performance and product quality are the core of modern breeding. The embryonic period is highly critical for muscle development, the number, shape and structure of muscle fibers are determined at the embryonic stage. Herein, we performed transcriptome analysis to reveal the law of muscle development in the embryonic stage of Chengkou Mountain Chicken at embryonic days (E) 12, 16, 19, 21., Results: Diameter and area of muscle fibers exhibited significant difference at different embryonic times(P < 0.01). A total of 16,330 mRNAs transcripts were detected, including 109 novel mRNAs transcripts. By comparing different embryonic muscle development time points, 2,262 in E12vsE16, 5,058 in E12vsE19, 6139 in E12vsE21, 1,282 in E16vsE19, 2,920 in E16vsE21, and 646 in E19vsE21differentially expressed mRNAs were identified. It is worth noting that 7,572 mRNAs were differentially expressed. The time-series expression profile of differentially expressed genes (DEGs) showed that the rising and falling expression trends were significantly enriched. The significant enrichment trends included 3,150 DEGs. GO enrichment analysis provided three significantly enriched categories of significantly enriched differential genes, including 65 cellular components, 88 molecular functions, and 453 biological processes. Through KEGG analysis, we explored the biological metabolic pathways involved in differentially expressed genes. A total of 177 KEGG pathways were enriched, including 19 significant pathways, such as extracellular matrix-receptor interactions. Similarly, numerous pathways related to muscle development were found, including the Wnt signaling pathway (P < 0.05), MAPK signalingpathway, TGF-beta signaling pathway, PI3K-Akt signaling pathway and mTOR signaling pathway. Among the differentially expressed genes, we selected those involved in developing 4-time points; notably, up-regulated genes included MYH1F, SLC25A12, and HADHB, whereas the down-regulated genes included STMN1, VASH2, and TUBAL3., Conclusions: Our study explored the embryonic muscle development of the Chengkou Mountain Chicken. A large number of DEGs related to muscle development have been identified ,and validation of key genes for embryonic development and preliminary explanation of their role in muscle development. Overall, this study broadened our current understanding of the phenotypic mechanism for myofiber formation and provides valuable information for improving chicken quality.
- Published
- 2021
- Full Text
- View/download PDF
182. Microevolutionary Dynamics of Chicken Genomes under Divergent Selection for Adiposity.
- Author
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Zhang H, Liang Q, Wang N, Wang Q, Leng L, Mao J, Wang Y, Wang S, Zhang J, Liang H, Zhou X, Li Y, Cao Z, Luan P, Wang Z, Yuan H, Wang Z, Zhou X, Lamont SJ, Da Y, Li R, Tian S, Du Z, and Li H
- Abstract
Decades of artificial selection have significantly improved performance and efficiency of animal production systems. However, little is known about the microevolution of genomes due to intensive breeding. Using whole-genome sequencing, we document dynamic changes of chicken genomes under divergent selection on adiposity over 19 generations. Directional selection reduced within-line but increased between-line genomic differences. We observed that artificial selection tended to result in recruitment of preexisting variations of genes related to adipose tissue growth. In addition, novel mutations contributed to divergence of phenotypes under selection but contributed significantly less than preexisting genomic variants. Integration of 15 generations genome sequencing, genome-wide association study, and multi-omics data further identified that genes involved in signaling pathways important to adipogenesis, such as autophagy and lysosome (URI1, MBL2), neural system (CHAT), and endocrine (PCSK1) pathways, were under strong selection. Our study provides insights into the microevolutionary dynamics of domestic animal genomes under artificial selection., Competing Interests: Declaration of Interests The authors declare no conflicts of interest., (Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
183. [Construction and expression characterization of transgenic chicken bioreactor vector].
- Author
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Yang P, Wang X, Wang Y, Wang Q, and Li H
- Subjects
- 3T3-L1 Cells, Animals, Cattle, Cytomegalovirus genetics, Cytomegalovirus metabolism, Epithelial Cells cytology, Female, Green Fluorescent Proteins genetics, Lentivirus genetics, Lentivirus metabolism, Luciferases genetics, Mice, Oviducts cytology, Promoter Regions, Genetic genetics, Transfection, Animals, Genetically Modified, Chickens genetics, Genetic Vectors genetics, Ovalbumin genetics, Oviducts metabolism
- Abstract
We constructed transgenic chicken bioreactor vector, driven by chicken ovalbumin promoter, lentiviral vector and cytomegalovirus (CMV) promoter control vector encoding green fluorescent protein (GFP) and luciferase (Luc) as reporter genes. The three vectors were used to transfect or infect chicken primary oviduct epithelial cells, embryo fibroblasts cells, mouse 3T3-L1 preadipocytes cells and bovine mammary epithelial cells. High efficient and specific expression vector for transgenic chicken bioreactor was determined by detecting fluorescence and luciferase activity. Reporter gene analysis showed that chicken ovalbumin promoter expression vector was not cell type-specific in these four different cells. Additionally, luciferase reporter analysis illustrated that the chicken ovalbumin promoter activity was over 100 times lower than that of the CMV promoter in four different cells. Both of these two reporter genes were expressed in those four different cells infected by lentiviral expression vectors. Similarly, the GFP reached the similar expression level in cells infected by lentivirus and cells transfected with CMV promoter plasmid vectors when the multiplicity of infection was 20. In conclusion, the transgenic chicken bioreactor vector under the control of chicken ovalbumin promoter was not highly efficient and cell type-specific. However, the efficient expression and extensiveness oflentiviral vector could be used for studying chicken oviduct bioreactor.
- Published
- 2011
184. [KCNQ4 gene mutations affected a pedigree with autosomal dominant hereditary hearing loss].
- Author
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Wang Q, Cao J, Li N, Yang Y, Wang Q, Yu L, Han D, and Yang W
- Subjects
- Exons, Female, Genes, Dominant, Humans, KCNQ Potassium Channels, Male, Pedigree, Hearing Loss, Sensorineural genetics, Mutation, Potassium Channels genetics, Potassium Channels, Voltage-Gated
- Abstract
Objective: To investigate if the KCNQ4 gene contributes to a Chinese non-syndromic hearing loss pedigree and to detect the gene mutations in the pedigree using candidate approach., Methods: PCR-SSCP and clone sequencing were performed to identify the mutations and polymorphism in PCR products of KCNQ4 coding sequence in the six-generations pedigree of autosomal dominant hereditary hearing loss., Results: Mutations and polymorphism detection were performed on the KCNQ4 coding sequence in 36 family members of the pedigree. A molecular polymorphism marker located in the exon2 and exon3 intron sequence, which resulted from a copy variation of 47 base pairs insertion or deletion, was found in KCNQ4 sequence., Conclusion: A new molecular polymorphism marker with different genotypes was proved to locate at the intron sequence between at exon2 and exon3. The correlation between genotype and phenotype was analyzed. Deaf individuals were accompanied by the increase of the intron copies in the family. These findings suggest that the changes of the copies of intron between exon2 and exon3 of KCNQ4 might be a specific marker for the hearing loss of the pedigree.
- Published
- 2002
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