351. Design, Synthesis, and Biophysical and Biological Evaluation of a Series of Pyrrolobenzodiazepine−Poly(N-methylpyrrole) Conjugates
- Author
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Wells, Geoff, R. H. Martin, Christopher, W. Howard, Philip, A. Sands, Zara, A. Laughton, Charles, Tiberghien, Arnaud, Kit Woo, Chi, A. Masterson, Luke, J. Stephenson, Marissa, A. Hartley, John, C. Jenkins, Terence, D. Shnyder, Steven, M. Loadman, Paul, J. Waring, Michael, and E. Thurston, David
- Abstract
A novel series of methyl ester-terminated C8-linked pyrrolobenzodiazepine (PBD)−poly(N-methylpyrrole) conjugates (50a−f) has been synthesized and their DNA interaction evaluated by thermal denaturation, DNA footprinting, and in vitro transcription stop assays. The synergistic effect of attaching a PBD unit to a polypyrrole fragment is illustrated by the large increase in DNA binding affinity (up to 50-fold) compared to the individual PBD and pyrrole components. 50a−fwere found to bind mainly to identical DNA sequences but with apparent binding site widths increasing with molecular length and the majority of sites conforming to the consensus motif 5'-XGXWz(z 3 ± 1; W A or T; X any base but preferably a purine). They also provided robust sequence-selective blockade of transcription at sites corresponding approximately to their DNA footprints. 50a−f were shown to have good cellular/nuclear penetration properties, and a degree of correlation between cytotoxicity and DNA-binding affinity was observed.
- Published
- 2006
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