168 results on '"Smith, Lydia"'
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152. The Impacts of Intervention on Emotional Awareness & Self-Regulation on Students with Disabilities
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Smith, Lydia and Smith, Lydia
153. Book Review Section 1
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ANGELO, RICHARD, primary, SMITH, LYDIA A. H., additional, KROTSENG, MARSHA V., additional, HUDEN, DAN, additional, LONG, DELBERT, additional, RURY, JOHN L., additional, BERARD, ROBERT NICHOLAS, additional, deCASTELL, SUZANNE, additional, GLASS, THOMAS E., additional, and JUNGCK, SUSAN, additional
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- 1988
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154. Fostering populations of arbuscular mycorrhizal fungi through cover crop choices and soil management
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Crane, George, Smith, Lydia, and Paszkowski, uta
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plant ,mycorrhiza ,amf ,cover ,crop ,metabarcoding ,18S ,microscopy ,fungi ,sustainable ,agriculture - Abstract
Over 70% of land plants, including many key agricultural crops, form a beneficial, symbiotic relationship with arbuscular mycorrhizal (AM) fungi. This has triggered interest in the potential role of these fungi in sustain-able food production for an increasing population. However, it is known that many common farming practices can negatively influence both the diversity, and abundance of the AM fungi. It is therefore desirable to identify farming practices or amendments that can foster these fungal populations to increase crop and soil benefits, including yield. Cover cropping, the growing of non-food crops outside of regular crop produc-tion for the role of protecting and improving soil, has also been suggest-ed to influence both the diversity and abundance of AM fungi. A large-scale analysis of AM fungal diversity in UK agriculture provided a framework for further analysis of how cover crops, and soil amendments influence AM fungal communities. Replicated trials in both glasshouse and field conditions have shown evidence that multiple iterations of cover crops can increase the extent to which plants are colonised by AM fungi, although this had no measurable impact on yield. In the same trial, it was shown that long term application of nitrogen fertiliser influenced AM fungal community composition, but this observation was not made in a shorter validation experiment conducted at the field scale. In a sepa-rate trial, addition of a commercial AM fungal inoculum had little impact on the AM fungal community, crop growth, or yield in field conditions, further suggesting that multiple iterations of soil amendments are re-quired to cause measurable, long-term shifts in AM fungal diversity and benefit.
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- 2021
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155. Annual Report of the President for 1985-86 (Book).
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Smith, Lydia A.H.
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GRADUATE education , *NONFICTION - Abstract
Reviews the book 'Annual Report of the President for 1985-86.'
- Published
- 1988
156. Mapping eye, arm, and reward information in frontal motor cortices using electrocorticography in non-human primates.
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Ouchi T, Scholl LR, Rajeswaran P, Canfield RA, Smith LI, and Orsborn AL
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Goal-directed reaches give rise to dynamic neural activity across the brain as we move our eyes and arms, and process outcomes. High spatiotemporal resolution mapping of multiple cortical areas will improve our understanding of how these neural computations are spatially and temporally distributed across the brain. In this study, we used micro-electrocorticography (μECoG) recordings in two male monkeys performing visually guided reaches to map information related to eye movements, arm movements, and receiving rewards over a 1.37 cm
2 area of frontal motor cortices (primary motor cortex, premotor cortex, frontal eye field, and dorsolateral pre-frontal cortex). Time-frequency and decoding analyses revealed that eye and arm movement information shifts across brain regions during a reach, likely reflecting shifts from planning to execution. We then used phase-based analyses to reveal potential overlaps of eye and arm information. We found that arm movement decoding performance was impacted by task-irrelevant eye movements, consistent with the presence of intermixed eye and arm information across much of motor cortices. Phase-based analyses also identified reward-related activity primarily around the principal sulcus in the pre-frontal cortex as well as near the arcuate sulcus in the premotor cortex. Our results demonstrate μECoG's strengths for functional mapping and provide further detail on the spatial distribution of eye, arm, and reward information processing distributed across frontal cortices during reaching. These insights advance our understanding of the overlapping neural computations underlying coordinated movements and reveal opportunities to leverage these signals to enhance future brain-computer interfaces., Competing Interests: Conflict of interest: A.L.O. is a scientific advisor for Meta Reality Labs- Published
- 2024
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157. Online group-based internal family systems treatment for posttraumatic stress disorder: Feasibility and acceptability of the program for alleviating and resolving trauma and stress.
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Comeau A, Smith LJ, Smith L, Soumerai Rea H, Ward MC, Creedon TB, Sweezy M, Rosenberg LG, and Schuman-Olivier Z
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Objective: Demand for trauma-focused therapy continues to increase, especially in community mental health care settings where group treatment models can be cost-effective and increase access to care. The Internal Family Systems (IFS) model for posttraumatic stress disorder (PTSD) may offer an effective therapeutic approach. The purpose of this proof-of-concept study was to evaluate the feasibility and acceptability of a novel, trauma-focused, group-based treatment approach and investigate potential mechanisms of action., Method: Study participants completed the Program for Alleviating and Resolving Trauma and Stress (PARTS), an online-delivered program including 16 weeks of 90-min IFS-based groups with eight 50-min individual IFS counseling sessions. Participants completed assessments including clinician-administered and self-report measures of PTSD, common comorbid conditions (e.g., complex PTSD [disturbances in self-organization], depression, anxiety, and suicidality), and potential mechanisms (e.g., decentering, self-compassion, and emotion regulation)., Results: Most participants ( n = 11/15; 73%) attended 12+ group sessions, with 92% (12/13 responders) reporting they would recommend PARTS to a friend. All respondents reported the program was helpful (13/13; 100%). PTSD symptom severity was reduced from baseline to Weeks 16 ( d = -0.7, p = .005) and 24 ( d = -0.9, p < .001). A clinically meaningful response (i.e., 10+ point reduction on the Clinician-Administered PTSD Scale for Diagnostic and Statistical Manual of Mental Disorders [5th ed.]) was demonstrated in 53% of participants (8/15) by Week 24. Decentering, self-compassion, and emotion regulation all improved ( p < .05)., Conclusions: PARTS was feasible and acceptable as a group-based, online intervention in an urban, public community health care system. While PARTS showed promise in reducing overall PTSD symptom severity, well-controlled efficacy research is needed. (PsycInfo Database Record (c) 2024 APA, all rights reserved).
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- 2024
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158. Imaging the master regulator of the antioxidant response in non-small cell lung cancer with positron emission tomography.
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Greenwood HE, Edwards RS, Tyrrell WE, Barber AR, Baark F, Tanc M, Khalil E, Falzone A, Ward NP, DeBlasi JM, Torrente L, Pearce DR, Firth G, Smith LM, Timmermand OV, Huebner A, George ME, Swanton C, Hynds RE, DeNicola GM, and Witney TH
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Mutations in the NRF2-KEAP1 pathway are common in non-small cell lung cancer (NSCLC) and confer broad-spectrum therapeutic resistance, leading to poor outcomes. The cystine/glutamate antiporter, system x
c - , is one of the >200 cytoprotective proteins controlled by NRF2, which can be non-invasively imaged by ( S )-4-(3-18 F-fluoropropyl)-l-glutamate ([18 F]FSPG) positron emission tomography (PET). Through genetic and pharmacologic manipulation, we show that [18 F]FSPG provides a sensitive and specific marker of NRF2 activation in advanced preclinical models of NSCLC. We validate imaging readouts with metabolomic measurements of system xc - activity and their coupling to intracellular glutathione concentration. A redox gene signature was measured in patients from the TRACERx 421 cohort, suggesting an opportunity for patient stratification prior to imaging. Furthermore, we reveal that system xc - is a metabolic vulnerability that can be therapeutically targeted for sustained tumour growth suppression in aggressive NSCLC. Our results establish [18 F]FSPG as predictive marker of therapy resistance in NSCLC and provide the basis for the clinical evaluation of both imaging and therapeutic agents that target this important antioxidant pathway.- Published
- 2023
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159. Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards.
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McGuire JA, Cotoras DD, O'Connell B, Lawalata SZS, Wang-Claypool CY, Stubbs A, Huang X, Wogan GOU, Hykin SM, Reilly SB, Bi K, Riyanto A, Arida E, Smith LL, Milne H, Streicher JW, and Iskandar DT
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We used Massively Parallel High-Throughput Sequencing to obtain genetic data from a 145-year old holotype specimen of the flying lizard, Draco cristatellus . Obtaining genetic data from this holotype was necessary to resolve an otherwise intractable taxonomic problem involving the status of this species relative to closely related sympatric Draco species that cannot otherwise be distinguished from one another on the basis of museum specimens. Initial analyses suggested that the DNA present in the holotype sample was so degraded as to be unusable for sequencing. However, we used a specialized extraction procedure developed for highly degraded ancient DNA samples and MiSeq shotgun sequencing to obtain just enough low-coverage mitochondrial DNA (721 base pairs) to conclusively resolve the species status of the holotype as well as a second known specimen of this species. The holotype was prepared before the advent of formalin-fixation and therefore was most likely originally fixed with ethanol and never exposed to formalin. Whereas conventional wisdom suggests that formalin-fixed samples should be the most challenging for DNA sequencing, we propose that evaporation during long-term alcohol storage and consequent water-exposure may subject older ethanol-fixed museum specimens to hydrolytic damage. If so, this may pose an even greater challenge for sequencing efforts involving historical samples., Competing Interests: The authors declare there are no competing interests.
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- 2018
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160. Reading the Centromere Epigenetic Mark.
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Smith L and Maddox PS
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- Centromere, Epigenesis, Genetic, Epigenomics, Chromosomal Proteins, Non-Histone genetics, Reading
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Centromeres epitomize the central problem of propagating non-DNA sequence-based information across generations. In this issue of Developmental Cell, Hori et al. (2017) and French et al. (2017) show that the centromere-associated protein KNL-2/M18BP1 reads the centromere epigenetic code to maintain centromere identity., (Copyright © 2017. Published by Elsevier Inc.)
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- 2017
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161. What do parents perceive are the barriers and facilitators to accessing psychological treatment for mental health problems in children and adolescents? A systematic review of qualitative and quantitative studies.
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Reardon T, Harvey K, Baranowska M, O'Brien D, Smith L, and Creswell C
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- Adolescent, Child, Child, Preschool, Evaluation Studies as Topic, Humans, Qualitative Research, Mental Health standards, Mental Health Services statistics & numerical data, Parents psychology
- Abstract
A minority of children and adolescents with mental health problems access treatment. The reasons for poor rates of treatment access are not well understood. As parents are a key gatekeeper to treatment access, it is important to establish parents' views of barriers/facilitators to accessing treatment. The aims of this study are to synthesise findings from qualitative and quantitative studies that report parents' perceptions of barriers/facilitators to accessing treatment for mental health problems in children/adolescents. A systematic review and narrative synthesis were conducted. Forty-four studies were included in the review and were assessed in detail. Parental perceived barriers/facilitators relating to (1) systemic/structural issues; (2) views and attitudes towards services and treatment; (3) knowledge and understanding of mental health problems and the help-seeking process; and (4) family circumstances were identified. Findings highlight avenues for improving access to child mental health services, including increased provision that is free to service users and flexible to their needs, with opportunities to develop trusting, supportive relationships with professionals. Furthermore, interventions are required to improve parents' identification of mental health problems, reduce stigma for parents, and increase awareness of how to access services.
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- 2017
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162. Introduction to Modern Methods in Light Microscopy.
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Ryan J, Gerhold AR, Boudreau V, Smith L, and Maddox PS
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- Animals, Humans, Image Processing, Computer-Assisted methods, Microscopy classification, Microscopy instrumentation, Microscopy standards, Optics and Photonics, Microscopy methods
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For centuries, light microscopy has been a key method in biological research, from the early work of Robert Hooke describing biological organisms as cells, to the latest in live-cell and single-molecule systems. Here, we introduce some of the key concepts related to the development and implementation of modern microscopy techniques. We briefly discuss the basics of optics in the microscope, super-resolution imaging, quantitative image analysis, live-cell imaging, and provide an outlook on active research areas pertaining to light microscopy.
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- 2017
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163. De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia.
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Mora-Ortiz M, Swain MT, Vickers MJ, Hegarty MJ, Kelly R, Smith LM, and Skøt L
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Background: Sainfoin (Onobrychis viciifolia) is a highly nutritious tannin-containing forage legume. In the diet of ruminants sainfoin can have anti-parasitic effects and reduce methane emissions under in vitro conditions. Many of these benefits have been attributed to condensed tannins or proanthocyanidins in sainfoin. A combination of increased use of industrially produced nitrogen fertilizer, issues with establishment and productivity in the first year and more reliable alternatives, such as red clover led to a decline in the use of sainfoin since the middle of the last century. In recent years there has been a resurgence of interest in sainfoin due to its potential beneficial nutraceutical and environmental attributes. However, genomic resources are scarce, thus hampering progress in genetic analysis and improvement. To address this we have used next generation RNA sequencing technology to obtain the first transcriptome of sainfoin. We used the library to identify gene-based simple sequence repeats (SSRs) and potential single nucleotide polymorphisms (SNPs)., Results: One genotype from each of five sainfoin accessions was sequenced. Paired-end (PE) sequences were generated from cDNA libraries of RNA extracted from 7 day old seedlings. A combined assembly of 92,772 transcripts was produced de novo using the Trinity programme. About 18,000 transcripts were annotated with at least one GO (gene ontology) term. A total of 63 transcripts were annotated as involved in the tannin biosynthesis pathway. We identified 3786 potential SSRs. SNPs were identified by mapping the reads of the individual assemblies against the combined assembly. After stringent filtering a total of 77,000 putative SNPs were identified. A phylogenetic analysis of single copy number genes showed that sainfoin was most closely related to red clover and Medicago truncatula, while Lotus japonicus, bean and soybean are more distant relatives., Conclusions: This work describes the first transcriptome assembly in sainfoin. The 92 K transcripts provide a rich source of SNP and SSR polymorphisms for future use in genetic studies of this crop. Annotation of genes involved in the condensed tannin biosynthesis pathway has provided the basis for further studies of the genetic control of this important trait in sainfoin.
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- 2016
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164. Polyphenol metabolism provides a screening tool for beneficial effects of Onobrychis viciifolia (sainfoin).
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Thill J, Regos I, Farag MA, Ahmad AF, Kusek J, Castro A, Schlangen K, Carbonero CH, Gadjev IZ, Smith LM, Halbwirth H, Treutter D, and Stich K
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- Antioxidants metabolism, Fabaceae enzymology, Fabaceae genetics, Genes, Plant genetics, Polyphenols biosynthesis, Fabaceae metabolism, Polyphenols metabolism
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Onobrychis viciifolia (sainfoin) is a traditional fodder legume showing multiple benefits for the environment, animal health and productivity but weaker agronomic performance in comparison to other legumes. Benefits can be mainly ascribed to the presence of polyphenols. The polyphenol metabolism in O. viciifolia was studied at the level of gene expression, enzyme activity, polyphenol accumulation and antioxidant activity. A screening of 37 accessions regarding each of these characters showed a huge variability between individual samples. Principal component analysis revealed that flavonols and flavan 3-ols are the most relevant variables for discrimination of the accessions. The determination of the activities of dihydroflavonol 4-reductase and flavonol synthase provides a suitable screening tool for the estimation of the ratio of flavonols to flavan 3-ols and can be used for the selection of samples from those varieties that have a specific optimal ratio of these compounds for further breeding., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
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- 2012
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165. Proanthocyanidin diversity in the EU 'HealthyHay' sainfoin (Onobrychis viciifolia) germplasm collection.
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Stringano E, Hayot Carbonero C, Smith LM, Brown RH, and Mueller-Harvey I
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- Cluster Analysis, European Union, Fabaceae classification, Fabaceae genetics, Phylogeny, Proanthocyanidins chemistry, Proanthocyanidins genetics, Fabaceae metabolism, Proanthocyanidins metabolism
- Abstract
This study investigated 37 diverse sainfoin (Onobrychis viciifolia Scop.) accessions from the EU 'HealthyHay' germplasm collection for proanthocyanidin (PA) content and composition. Accessions displayed a wide range of differences: PA contents varied from 0.57 to 2.80 g/100 g sainfoin; the mean degree of polymerisation from 12 to 84; the proportion of prodelphinidin tannins from 53% to 95%, and the proportion of trans-flavanol units from 12% to 34%. A positive correlation was found between PA contents (thiolytic versus acid-butanol degradation; P<0.001; R(2)=0.49). A negative correlation existed between PA content (thiolysis) and mDP (P<0.05; R(2)=-0.30), which suggested that accessions with high PA contents had smaller PA polymers. Cluster analysis revealed that European accessions clustered into two main groups: Western Europe and Eastern Europe/Asia. In addition, accessions from USA, Canada and Armenia tended to cluster together. Overall, there was broad agreement between tannin clusters and clusters that were based on morphological and agronomic characteristics., (Copyright © 2012 Elsevier Ltd. All rights reserved.)
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- 2012
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166. Enhancement of artemisinin concentration and yield in response to optimization of nitrogen and potassium supply to Artemisia annua.
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Davies MJ, Atkinson CJ, Burns C, Woolley JG, Hipps NA, Arroo RR, Dungey N, Robinson T, Brown P, Flockart I, Hill C, Smith L, and Bentley S
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- Artemisinins analysis, Biomass, Fertilizers, Nitrogen metabolism, Potassium metabolism, Antimalarials metabolism, Artemisia annua drug effects, Artemisia annua metabolism, Artemisinins metabolism, Nitrogen pharmacology, Potassium pharmacology
- Abstract
Background and Aims: The resurgence of malaria, particularly in the developing world, is considerable and exacerbated by the development of single-gene multi-drug resistances to chemicals such as chloroquinone. Drug therapies, as recommended by the World Health Organization, now include the use of antimalarial compounds derived from Artemisia annua--in particular, the use of artemisinin-based ingredients. Despite our limited knowledge of its mode of action or biosynthesis there is a need to secure a supply and enhance yields of artemisinin. The present study aims to determine how plant biomass can be enhanced while maximizing artemisinin concentration by understanding the plant's nutritional requirements for nitrogen and potassium., Methods: Experiments were carried out, the first with differing concentrations of nitrogen, at 6, 31, 56, 106, 206 or 306 mg L(-1) being applied, while the other differing in potassium concentration (51, 153 or 301 mg L(-1)). Nutrients were supplied in irrigation water to plants in pots and after a growth period biomass production and leaf artemisinin concentration were measured. These data were used to determine optimal nutrient requirements for artemisinin yield., Key Results: Nitrogen nutrition enhanced plant nitrogen concentration and biomass production successively up to 106 mg N L(-1) for biomass and 206 mg N L(-1) for leaf nitrogen; further increases in nitrogen had no influence. Artemisinin concentration in dried leaf material, measured by HPLC mass spectroscopy, was maximal at a nitrogen application of 106 mg L(-1), but declined at higher concentrations. Increasing potassium application from 51 to 153 mg L(-1) increased total plant biomass, but not at higher applications. Potassium application enhanced leaf potassium concentration, but there was no effect on leaf artemisinin concentration or leaf artemisinin yield., Conclusions: Artemisinin concentration declined beyond an optimal point with increasing plant nitrogen concentration. Maximization of artemisinin yield (amount per plant) requires optimization of plant biomass via control of nitrogen nutrition.
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- 2009
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167. Exploring the radiation of a diverse reef fish family: phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera.
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James Cooper W, Smith LL, and Westneat MW
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- Animals, Bayes Theorem, Cell Nucleus genetics, DNA, Mitochondrial genetics, Fish Proteins genetics, Genetic Speciation, Likelihood Functions, Models, Genetic, Sequence Alignment, Sequence Analysis, DNA, Species Specificity, Evolution, Molecular, Perciformes classification, Perciformes genetics, Phylogeny
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The damselfishes (Perciformes, Pomacentridae) are an important family of marine reef fishes that occupy a range of ecological positions in the world's oceans. In order to determine the evolutionary pattern of their radiation, we used multiple methods to examine molecular data from 104 species representing all extant genera. The analysis of 4291 DNA nucleotides (1281bp were parsimony informative) from three nuclear genes (rag-1, rag-2 and bmp-4) and three mitochondrial genes (12s, 16s and nd3), produced well-resolved phylogenies with strong evidence for a monophyletic Pomacentridae, and support for five major damselfish clades. We found that the monotypic subfamily Lepidozyginae evolved early in the pomacentrid radiation. The placement of the genus Altrichthys indicates that brood care has evolved at least twice among the damselfishes. The subfamilies Chrominae and Pomacentrinae, and the genera Abudefduf, Chromis, Chrysiptera, Plectroglyphidodon, and Stegastes, were always found to be polyphyletic, and monophyly was rejected for the genus Amphiprion by almost every analysis. All phylogenetic studies of the Pomacentridae have indicated that their taxonomy is in need of revision at multiple levels. We provide a new classification scheme wherein each subfamily is now monophyletic, and this reorganization is consistent with all previous molecular studies of the damselfishes. The Chrominae are restricted to the genera Chromis and Dascyllus; the Pomacentrinae now represent a lineage of 16 genera that constitute a major, and relatively recent, radiation of coral reef fishes throughout the Indo-West Pacific; we erect the new subfamlies Abudefdufinae and Stegastinae; we relegate the anemonefishes (the Amphiprioninae sensu Allen) to the tribe Amphiprionini within the Pomacentrinae, and synonomize the genus Azurina with Chromis.
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- 2009
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168. Local phylogenetic divergence and global evolutionary convergence of skull function in reef fishes of the family Labridae.
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Westneat MW, Alfaro ME, Wainwright PC, Bellwood DR, Grubich JR, Fessler JL, Clements KD, and Smith LL
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- Animals, Base Sequence, Bayes Theorem, Biomechanical Phenomena, DNA, Mitochondrial genetics, Histological Techniques, Likelihood Functions, Models, Genetic, Molecular Sequence Data, Perciformes anatomy & histology, Perciformes physiology, Sequence Analysis, DNA, Species Specificity, Feeding Behavior physiology, Perciformes genetics, Phylogeny, Skull anatomy & histology, Skull physiology
- Abstract
The Labridae is one of the most structurally and functionally diversified fish families on coral and rocky reefs around the world, providing a compelling system for examination of evolutionary patterns of functional change. Labrid fishes have evolved a diverse array of skull forms for feeding on prey ranging from molluscs, crustaceans, plankton, detritus, algae, coral and other fishes. The species richness and diversity of feeding ecology in the Labridae make this group a marine analogue to the cichlid fishes. Despite the importance of labrids to coastal reef ecology, we lack evolutionary analysis of feeding biomechanics among labrids. Here, we combine a molecular phylogeny of the Labridae with the biomechanics of skull function to reveal a broad pattern of repeated convergence in labrid feeding systems. Mechanically fast jaw systems have evolved independently at least 14 times from ancestors with forceful jaws. A repeated phylogenetic pattern of functional divergence in local regions of the labrid tree produces an emergent family-wide pattern of global convergence in jaw function. Divergence of close relatives, convergence among higher clades and several unusual 'breakthroughs' in skull function characterize the evolution of functional complexity in one of the most diverse groups of reef fishes.
- Published
- 2005
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