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This paper describes the design of stimuli-sensitive theranostic nanoparticles, composed of reduced graphene oxide (rGO) self-assembled on thermosensitive liposomes encapsulated doxorubicin (DOX) and carbon quantum dot (CQD) (CQD-DOX-rGO-Tlip). The rGO-Tlip particles have been observed to be flower-shaped objects. The thermoresponsive and theranostic potential of CQD-DOX-rGO-Tlips have been studied using differential scanning calorimetry (DSC), ultraviolet visible spectroscopy (UV–Vis), Raman spectroscopy and photoluminescent assays. The chemo-photothermal potential of rGO–Tlip on MD-MB-231 cells during NIR laser irradiation has been examined using MTT assay. Also, the ability of rGO–Tlip to be taken up by MD-MB-231 cells has been studied using confocal microscopy and flowcytometry. The results indicate that CQD-DOX-rGO-Tlips achieve a synergistic effect between photothermal therapy and chemotherapy for cancer treatment. Furthermore, online monitoring drug release is accomplished by studying the emission intensity of CQD while DOX released. • CQD-DOX-rGO-Tlips are introduced as a theranostic nanoparticles. • CQD-DOX-rGO-Tlips have a stimuli sensitive chemo-photothermal effect. • Online monitoring drug release can be achieved by using CQD-DOX-rGO-Tlips. • Flow cytometry confirm high cellular uptake of CQD-DOX-rGO-Tlips. [ABSTRACT FROM AUTHOR]

Background: In this study, we want to evaluate the response to Lutetium-177 ( 177 Lu)-DOTATATE treatment in patients with neuroendocrine tumors (NETs) using single-photon emission computed tomography (SPECT) and computed tomography (CT), based on image-based radiomics and clinical features., Methods: The total volume of tumor areas was segmented into 61 SPECT and 41 SPECT-CT images from 22 patients with NETs. A total of 871 radiomics and clinical features were extracted from the SPECT and SPECT-CT images. Subsequently, a feature reduction method called maximum relevance minimum redundancy (mRMR) was used to select the best combination of features. These selected features were modeled using a decision tree (DT), random forest (RF), K-nearest neighbor (KNN), and support vector machine (SVM) classifiers to predict the treatment response in patients. For the SPECT and SPECT-CT images, ten and eight features, respectively, were selected using the mRMR algorithm., Results: The results revealed that the RF classifier with feature selection algorithms through mRMR had the highest classification accuracies of 64% and 83% for the SPECT and SPECT-CT images, respectively. The accuracy of the classifications of DT, KNN, and SVM for SPECT-CT images is 79%, 74%, and 67%, respectively. The poor accuracy obtained from different classifications in SPECT images (≈64%) showed that these images are not suitable for predicting treatment response., Conclusions: Modeling the selected features of SPECT-CT images based on their anatomy and the presence of extensive gray levels makes it possible to predict responses to the treatment of 177 Lu-DOTATATE for patients with NETs., Competing Interests: There are no conflicts of interest., (Copyright: © 2024 Journal of Medical Signals & Sensors.)

Schizophrenia (SZ) is a serious mental disorder that can mainly be distinguished by symptoms including delusions and hallucinations. This mental disorder makes difficult conditions for the person and her/his relatives. Electroencephalogram (EEG) signal is a sophisticated neuroimaging technique that helps neurologists to diagnose this mental disorder. Estimating and evaluating brain effective connectivity between electrode pairs is an appropriate way of diagnosing brain states in neuroscience studies. In this study, we construct a novel image from multi-channels of EEG based on the fusion of three effective connectivity, partial directed coherence (PDC), and direct directed transfer function (dDTF) and transfer entropy (TE) at three consecutive time windows. Then, this image was used as input of five well-known convolutional neural networks (CNNs) through transfer learning (TL) to learn patterns related to SZ patients to diagnose this disorder from normal participants from two public databases. Also, the majority voting method was used to improve these results based on ensemble results of the five CNNs, i.e., ResNet-50, Inception-v3, DenseNet-201, EfficientNetB0, and NasNet-Mobile. The highest average accuracy, specificity and sensitivity to diagnose SZ patients from healthy participants were obtained using EfficientNetB0 through the Leave-One-Subject-out (LOSO) Cross-Validation criterion equal to 96.67%, 96.23%, 96.82%, 95.15%, 94.42% and 96.28% for the first and second databases, respectively. Also, as we suggested, the ensemble approach of EfficientNetB0, ResNet-50 and NasNet-Mobile increased the accuracy by approximately 3%. Our results show the effectiveness of providing fused images from multichannel EEG signals to the ensemble of CNNs through TL to diagnose SZ than state-of-the-art studies., Competing Interests: Competing interestThe authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© The Author(s), under exclusive licence to Springer Nature B.V. 2024. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)

Estimation of mental workload from electroencephalogram (EEG) signals aims to accurately measure the cognitive demands placed on an individual during multitasking mental activities. By analyzing the brain activity of the subject, we can determine the level of mental effort required to perform a task and optimize the workload to prevent cognitive overload or underload. This information can be used to enhance performance and productivity in various fields such as healthcare, education, and aviation. In this paper, we propose a method that uses EEG and deep neural networks to estimate the mental workload of human subjects during multitasking mental activities. Notably, our proposed method employs subject-independent classification. We use the "STEW" dataset, which consists of two tasks, namely "No task" and "simultaneous capacity (SIMKAP)-based multitasking activity". We estimate the different workload levels of two tasks using a composite framework consisting of brain connectivity and deep neural networks. After the initial preprocessing of EEG signals, an analysis of the relationships between the 14 EEG channels is conducted to evaluate effective brain connectivity. This assessment illustrates the information flow between various brain regions, utilizing the direct Directed Transfer Function (dDTF) method. Then, we propose a deep hybrid model based on pre-trained Convolutional Neural Networks (CNN) and Long Short-Term Memory (LSTM) for the classification of workload levels. The accuracy of the proposed deep model achieved 83.12% according to the subject-independent leave-subject-out (LSO) approach. The pre-trained CNN + LSTM approaches to EEG data have been found to be an accurate method for assessing the mental workload.

The early diagnosis of NASH disease can decrease the risk of proceeding elements and treatment costs for patients. This study aims to present an optimal combination of intelligent algorithms using advanced machine learning methods, including different feature selections and classifications based on clinical data and blood factors. In this work, collected data were from 176 patients to investigate NASH disease, and 19 features were extracted. We then sought to find the best combination of features based on different feature selection algorithms such as Feature Forward Selection (FFS), Minimum Redundancy Maximum Relevance (MRMR), and Mutual Information (MI). Finally, we used nine classifier frameworks with different mathematical mechanisms, including random forest (RF), logistic regression (LR), Linear Discriminant Analysis (LDA), AdaBoost, K nearest neighbors (KNN), multilayer perceptron model (MLP), support vector machine (SVM), and decision tree (DT) to estimate NASH disease. Our investigation revealed that the combination of dominant features, namely body mass index (BMI), glutamic pyruvic transaminase (GPT), total cholesterol (TC), high-density lipoprotein (HDL), Ezetimibe, lipoprotein level Lp(a), Loge(Lp(a)), total triglyceride (TG), Creatinine (Cre), HbA1c, Fibrate, and Sex, selected by the MRMR algorithm and classified by the RF method can provide the most appropriate performance based on less computation effort and maximum performance with accuracy, AUC, precision, and recall indices, which are 81.51 ± 9.35 , 82.53 ± 11.24 , 85.28 ± 9.68 , and 89.49 ± 7.92 , respectively. This study investigated the configuration of feature selection and classifier that is most suitable for classifying NASH disease based on clinical data and blood factors. The proposed intelligent algorithm based on MRMR and RF classifier can automatically diagnose NASH disease with appropriate performance and present an initial report without any further invasive methods. It also clarifies the diagnostic process and, as a result, the continuation of their prevention and treatment cycle.

In this study, we have developed a novel method based on deep learning and brain effective connectivity to classify responders and non-responders to selective serotonin reuptake inhibitors (SSRIs) antidepressants in major depressive disorder (MDD) patients prior to the treatment using EEG signal. The effective connectivity of 30 MDD patients was determined by analyzing their pretreatment EEG signals, which were then concatenated into delta, theta, alpha, and beta bands and transformed into images. Using these images, we then fine tuned a hybrid Convolutional Neural Network that is enhanced with bidirectional Long Short-Term Memory cells based on transfer learning. The Inception-v3, ResNet18, DenseNet121, and EfficientNet-B0 models are implemented as base models. Finally, the models are followed by BiLSTM and dense layers in order to classify responders and non-responders to SSRI treatment. Results showed that the EfficiencyNet-B0 has the highest accuracy of 98.33, followed by DensNet121, ResNet18 and Inception-v3. Therefore, a new method was proposed in this study that uses deep learning models to extract both spatial and temporal features automatically, which will improve classification results. The proposed method provides accurate identification of MDD patients who are responding, thereby reducing the cost of medical facilities and patient care., (© 2024. Australasian College of Physical Scientists and Engineers in Medicine.)

Mental workload refers to the cognitive effort required to perform tasks, and it is an important factor in various fields, including system design, clinical medicine, and industrial applications. In this paper, we propose innovative methods to assess mental workload from EEG data that use effective brain connectivity for the purpose of extracting features, a hierarchical feature selection algorithm to select the most significant features, and finally machine learning models. We have used the Simultaneous Task EEG Workload (STEW) dataset, an open-access collection of raw EEG data from 48 subjects. We extracted brain-effective connectivities by the direct directed transfer function and then selected the top 30 connectivities for each standard frequency band. Then we applied three feature selection algorithms (forward feature selection, Relief-F, and minimum-redundancy-maximum-relevance) on the top 150 features from all frequencies. Finally, we applied sevenfold cross-validation on four machine learning models (support vector machine (SVM), linear discriminant analysis, random forest, and decision tree). The results revealed that SVM as the machine learning model and forward feature selection as the feature selection method work better than others and could classify the mental workload levels with accuracy equal to 89.53% (± 1.36)., (© 2024. The Author(s).)

Introduction: Repetitive transcranial magnetic stimulation (rTMS) is a non-pharmacological treatment for drug-resistant major depressive disorder (MDD) patients. Since the success rate of rTMS treatment is about 50%-55%, it is essential to predict the treatment outcome before starting based on electroencephalogram (EEG) signals, leading to identifying effective biomarkers and reducing the burden of health care centers., Methods: To this end, pretreatment EEG data with 19 channels in the resting state from 34 drug-resistant MDD patients were recorded. Then, all patients received 20 sessions of rTMS treatment, and a reduction of at least 50% in the total beck depression inventory (BDI-II) score before and after the rTMS treatment was defined as a reference. In the current study, effective brain connectivity features were determined by the direct directed transfer function (dDTF) method from patients' pretreatment EEG data in all frequency bands separately. Then, the brain functional connectivity patterns were modeled as graphs by the dDTF method and examined with the local graph theory indices, including degree, out-degree, in-degree, strength, out-strength, in-strength, and betweenness centrality., Results: The results indicated that the betweenness centrality index in the Fp2 node and the δ frequency band are the best biomarkers, with the highest area under the receiver operating characteristic curve value of 0.85 for predicting the rTMS treatment outcome in drug-resistant MDD patients., Conclusion: The proposed method investigated the significant biomarkers that can be used to predict the rTMS treatment outcome in drug-resistant MDD patients and help clinical decisions., (Copyright© 2024 Iranian Neuroscience Society.)

Background: The Gleason grading system has been the most effective prediction for prostate cancer patients. This grading system provides this possibility to assess prostate cancer's aggressiveness and then constitutes an important factor for stratification and therapeutic decisions. However, determining Gleason grade requires highly-trained pathologists and is time-consuming and tedious, and suffers from inter-pathologist variability. To remedy these limitations, this paper introduces an automatic methodology based on transfer learning with pretrained convolutional neural networks (CNNs) for automatic Gleason grading of prostate cancer tissue microarray (TMA)., Methods: Fifteen pretrained (CNNs): Efficient Nets (B0-B5), NasNetLarge, NasNetMobile, InceptionV3, ResNet-50, SeResnet 50, Xception, DenseNet121, ResNext50, and inception_resnet_v2 were fine-tuned on a dataset of prostate carcinoma TMA images. Six pathologists separately identified benign and cancerous areas for each prostate TMA image by allocating benign, 3, 4, or 5 Gleason grade for 244 patients. The dataset was labeled by these pathologists and majority vote was applied on pixel-wise annotations to obtain a unified label., Results: Results showed the NasnetLarge architecture is the best model among them in the classification of prostate TMA images of 244 patients with accuracy of 0.93 and area under the curve of 0.98., Conclusion: Our study can act as a highly trained pathologist to categorize the prostate cancer stages with more objective and reproducible results., Competing Interests: There are no conflicts of interest., (Copyright: © 2024 Journal of Medical Signals & Sensors.)

This study aims to develop a machine learning approach leveraging clinical data and blood parameters to predict non-alcoholic steatohepatitis (NASH) based on the NAFLD Activity Score (NAS). Using a dataset of 181 patients, we performed preprocessing including normalization and categorical encoding. To identify predictive features, we applied sequential forward selection (SFS), chi-square, analysis of variance (ANOVA), and mutual information (MI). The selected features were used to train machine learning classifiers including SVM, random forest, AdaBoost, LightGBM, and XGBoost. Hyperparameter tuning was done for each classifier using randomized search. Model evaluation was performed using leave-one-out cross-validation over 100 repetitions. Among the classifiers, random forest, combined with SFS feature selection and 10 features, obtained the best performance: Accuracy: 81.32% ± 6.43%, Sensitivity: 86.04% ± 6.21%, Specificity: 70.49% ± 8.12% Precision: 81.59% ± 6.23%, and F1-score: 83.75% ± 6.23% percent. Our findings highlight the promise of machine learning in enhancing early diagnosis of NASH and provide a compelling alternative to conventional diagnostic techniques. Consequently, this study highlights the promise of machine learning techniques in enhancing early and non-invasive diagnosis of NASH based on readily available clinical and blood data. Our findings provide the basis for developing scalable approaches that can improve screening and monitoring of NASH progression., (© 2024. The Author(s).)

Introduction: Functional neuroimaging has developed a fundamental ground for understanding the physical basis of the brain. Recent studies have extracted invaluable information from the underlying substrate of the brain. However, cognitive deficiency has insufficiently been assessed by researchers in multiple sclerosis (MS). Therefore, extracting the brain network differences among relapsing-remitting MS (RRMS) patients and healthy controls as biomarkers of cognitive task functional magnetic resonance imaging (fMRI) data and evaluating such biomarkers using machine learning were the aims of this study., Methods: In order to activate cognitive functions of the brain, blood-oxygen-level-dependent (BOLD) data were collected throughout the application of a cognitive task. Accordingly, a nonlinear-based brain network was established using kernel mutual information based on the automated anatomical labeling atlas (AAL). Subsequently, a statistical test was carried out to determine the variation in brain network measures between the two groups on binary adjacency matrices. We also found the prominent graph features by merging the Wilcoxon rank-sum test with the Fisher score as a hybrid feature selection method., Results: The results of the classification performance measures showed that the construction of a brain network using a new nonlinear connectivity measure in task-fMRI performs better than the linear connectivity measures in terms of classification. The Wilcoxon rank-sum test also demonstrated a superior result for clinical applications., Conclusion: We believe that non-linear connectivity measures, like KMI, outperform linear connectivity measures, like correlation coefficient in finding the biomarkers of MS disease according to classification performance metrics., Highlights: The performance of some brain regions (the hippocampus, parahippocampus, cuneus, pallidum, and two segments of the cerebellum) is different between healthy and MS people.Non-linear connectivity measures, such as Kernel mutual information, perform better than linear connectivity measures, such as correlation coefficient, in finding the biomarkers of MS disease., Plain Language Summary: Multiple sclerosis (MS) can disrupt the function of the central nervous system. The function of brain network is impaired in these patients. In this study, we evaluated the change in brain network based on a non-linear connectivity measure using cognitive task-based fMRI data between MS patients and healthy controls. We used Kernel mutual information (KMI) and designed a graph network based on the results of connectivity analysis. The the paced auditory serial addition test was used to activate cognitive functions of the brain. The classification was employed for the results using different decision tree -based technique and support vector machine. KMI can be considered a valid measure of connectivity over linear measures, like the correlation coefficient. KMI does not have the drawbacks of mutual information technique. However, further studies should be implemented on brain data of MS patients to draw more definite conclusions., Competing Interests: The authors declared no conflict of interest., (Copyright© 2023 Iranian Neuroscience Society.)

Emotions are a critical aspect of daily life and serve a crucial role in human decision-making, planning, reasoning, and other mental states. As a result, they are considered a significant factor in human interactions. Human emotions can be identified through various sources, such as facial expressions, speech, behavior (gesture/position), or physiological signals. The use of physiological signals can enhance the objectivity and reliability of emotion detection. Compared with peripheral physiological signals, electroencephalogram (EEG) recordings are directly generated by the central nervous system and are closely related to human emotions. EEG signals have the great spatial resolution that facilitates the evaluation of brain functions, making them a popular modality in emotion recognition studies. Emotion recognition using EEG signals presents several challenges, including signal variability due to electrode positioning, individual differences in signal morphology, and lack of a universal standard for EEG signal processing. Moreover, identifying the appropriate features for emotion recognition from EEG data requires further research. Finally, there is a need to develop more robust artificial intelligence (AI) including conventional machine learning (ML) and deep learning (DL) methods to handle the complex and diverse EEG signals associated with emotional states. This paper examines the application of DL techniques in emotion recognition from EEG signals and provides a detailed discussion of relevant articles. The paper explores the significant challenges in emotion recognition using EEG signals, highlights the potential of DL techniques in addressing these challenges, and suggests the scope for future research in emotion recognition using DL techniques. The paper concludes with a summary of its findings., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 Elsevier Ltd. All rights reserved.)

Major Depressive Disorder (MDD) is a high prevalence disease that needs an effective and timely treatment to prevent its progress and additional costs. Repetitive Transcranial Magnetic Stimulation (rTMS) is an effective treatment option for MDD patients which uses strong magnetic pulses to stimulate specific regions of the brain. However, some patients do not respond to this treatment which causes the waste of multiple weeks as treatment time and clinical resources. Therefore developing an effective way for the prediction of response to the rTMS treatment of depression is necessary. In this work, we proposed a hybrid model created by pre-trained Convolutional Neural Networks (CNN) models and Bidirectional Long Short-Term Memory (BLSTM) cells to predict response to rTMS treatment from raw EEG signal. Three pre-trained CNN models named VGG16, InceptionResNetV2, and EffecientNetB0 were utilized as Transfer Learning (TL) models to construct hybrid TL-BLSTM models. Then an ensemble of these models was created using weighted majority voting which the weights were optimized by Differential Evolution (DE) optimization algorithm. Evaluation of these models shows the superior performance of the ensemble model by the accuracy of 98.51%, sensitivity of 98.64%, specificity of 98.36%, F1-score of 98.6%, and AUC of 98.5%. Therefore, the ensemble of the proposed hybrid convolutional recurrent networks can efficiently predict the treatment outcome of rTMS using raw EEG data., Competing Interests: Competing InterestsThe authors have no relevant financial or non-financial interests to disclose., (© The Author(s), under exclusive licence to Springer Nature B.V. 2022. Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.)

Prediction of response to Repetitive Transcranial Magnetic Stimulation (rTMS) can build a very effective treatment platform that helps Major Depressive Disorder (MDD) patients to receive timely treatment. We proposed a deep learning model powered up by state-of-the-art methods to classify responders (R) and non-responders (NR) to rTMS treatment. Pre-treatment Electro-Encephalogram (EEG) signal of public TDBRAIN dataset and 46 proprietary MDD subjects were utilized to create time-frequency representations using Continuous Wavelet Transform (CWT) to be fed into the two powerful pre-trained Convolutional Neural Networks (CNN) named VGG16 and EfficientNetB0. Equipping these Transfer Learning (TL) models with Bidirectional Long Short-Term Memory (BLSTM) and attention mechanism for the extraction of most discriminative spatiotemporal features from input images, can lead to superior performance in the prediction of rTMS treatment outcome. Five brain regions named Frontal, Central, Parietal, Temporal, and occipital were assessed and the highest evaluated performance in 46 proprietary MDD subjects was acquired for the Frontal region using the TL-LSTM-Attention model based on EfficientNetB0 with accuracy, sensitivity, specificity, and Area Under the Curve (AUC) of 97.1%, 97.3%, 97.0%, and 0.96 respectively. Additionally, to test the generalizability of the proposed models, these TL-BLSTM-Attention models were evaluated on a public dataset called TDBRAIN and the highest accuracy of 82.3%, the sensitivity of 80.2%, the specificity of 81.9% and the AUC of 0.83 were obtained. Therefore, advanced deep learning methods using a time-frequency representation of EEG signals from the frontal brain region and the convolutional recurrent neural networks equipped with the attention mechanism can construct an accurate platform for the prediction of response to the rTMS treatment., (© 2023. The Author(s).)

One of the most effective treatments for drug-resistant Major depressive disorder (MDD) patients is repetitive transcranial magnetic stimulation (rTMS). To improve treatment efficacy and reduce health care costs, it is necessary to predict the treatment response. In this study, we intend to predict the rTMS treatment response in MDD patients from electroencephalogram (EEG) signals before starting the treatment using machine learning approaches. Effective brain connectivity of 19-channel EEG data of MDD patients was calculated by the direct directed transfer function (dDTF) method. Then, using three feature selection methods, the best features were selected and patients were classified as responders or non-responders to rTMS treatment by using the support vector machine (SVM). Results on the 34 MDD patients indicated that the Fp2 region in the delta and theta frequency bands has a significant difference between the two groups and can be used as a significant brain biomarker to assess the rTMS treatment response. Also, the highest accuracy (89.6%) using the SVM classifier for the best features of the dDTF method based on the area under the receiver operating characteristic curve (AUC-ROC) criteria was obtained by combining the delta and theta frequency bands. Consequently, the proposed method can accurately detect the rTMS treatment response in MDD patients before starting treatment on the EEG signal to avoid financial and time costs to patients and medical centers., (© 2022. Australasian College of Physical Scientists and Engineers in Medicine.)

Repetitive Transcranial Magnetic Stimulation (rTMS) is proposed as an effective treatment for major depressive disorder (MDD). However, because of the suboptimal treatment outcome of rTMS, the prediction of response to this technique is a crucial task. We developed a deep learning (DL) model to classify responders (R) and non-responders (NR). With this aim, we assessed the pre-treatment EEG signal of 34 MDD patients and extracted effective connectivity (EC) among all electrodes in four frequency bands of EEG signal. Two-dimensional EC maps are put together to create a rich connectivity image and a sequence of these images is fed to the DL model. Then, the DL framework was constructed based on transfer learning (TL) models which are pre-trained convolutional neural networks (CNN) named VGG16, Xception, and EfficientNetB0. Then, long short-term memory (LSTM) cells are equipped with an attention mechanism added on top of TL models to fully exploit the spatiotemporal information of EEG signal. Using leave-one subject out cross validation (LOSO CV), Xception-BLSTM-Attention acquired the highest performance with 98.86% of accuracy and 97.73% of specificity. Fusion of these models as an ensemble model based on optimized majority voting gained 99.32% accuracy and 98.34% of specificity. Therefore, the ensemble of TL-LSTM-Attention models can predict accurately the treatment outcome.

Convolutional Neural Networks (CNN) have recently made considerable advances in the field of biomedical signal processing. These methodologies can assist in emotion recognition for affective brain computer interface. In this paper, a novel emotion recognition system based on the effective connectivity and the fine-tuned CNNs from multichannel Electroencephalogram (EEG) signal is presented. After preprocessing EEG signals, the relationships among 32 channels of EEG in the form of effective brain connectivity analysis which represents information flow between regions are computed by direct Directed Transfer Function (dDTF) method which yields a 32*32 image. Then, these constructed images from EEG signals for each subject were fed as input to four versions of pre-trained CNN models, AlexNet, ResNet-50, Inception-v3 and VGG-19 and the parameters of these models are fine-tuned, independently. The proposed deep learning architectures automatically learn patterns in the constructed image of the EEG signals in frequency bands. The efficiency of the proposed approach is evaluated on MAHNOB-HCI and DEAP databases. The experiments for classifying five emotional states show that the ResNet-50 applied on dDTF images in alpha band achieves best results due to specific architecture which captures the brain connectivity, efficiently. The accuracy and F1-score values for MAHNOB-HCI were obtained 99.41, 99.42 and for DEAP databases, 98.17, and 98.23. Newly proposed model is capable of effectively analyzing the brain function using information flow from multichannel EEG signals using effective connectivity measure of dDTF and ResNet-50., Competing Interests: Conflict of interestThere is no conflicts of interest., (© The Author(s), under exclusive licence to Springer Nature B.V. 2021.)

The aim of this study is to classify patients suspected from COVID-19 to five stages as normal, early, progressive, peak, and absorption stages using radiomics approach based on lung computed tomography images. Lung CT scans of 683 people were evaluated. A set of statistical texture features was extracted from each CT image. The people were classified using the random forest algorithm as an ensemble method based on the decision trees outputs to five stages of COVID-19 disease. Proposed method attains the highest result with an accuracy of 93.55% (96.25% in normal, 74.39% in early, 100% in progressive, 82.19% in peak, and 96% in absorption stage) compared to the other three common classifiers. Radiomics method can be used for the classification of the stage of COVID-19 disease with good accuracy to help decide the length of time required to hospitalize patients, determine the type of treatment process required for patients in each category, and reduce the cost of care and treatment for hospitalized individuals., (© 2022. Australasian College of Physical Scientists and Engineers in Medicine.)

Purpose: Alzheimer's is the most common irreversible neurodegenerative disease. Its symptoms range from memory impairments to degradation of multiple cognitive abilities and ultimately death. Mild cognitive impairment (MCI) is the earliest detectable stage that happens between normal aging and early dementia, and even though MCI subjects have a chance of changing back to cognitively normal or even staying the same, there is a risk that their condition progresses to Alzheimer's disease (AD) annually. Therefore predicting AD among MCI subjects is pivotal for starting treatments at an opportune time in case of progression, and if staying stable is the case, the need for consistent medical observations would eliminate. Thus, we aim to diagnose possible conversion from MCI to AD by exploiting a class of deep learning (DL) methods called convolutional neural network (CNN)., Methods: We proposed a three-dimensional CNN (3D-CNN) to combine and analyze resting-state functional magnetic resonance imaging (rs-fMRI), clinical assessment results, and demographic information to predict conversion from MCI to AD in an average 5-years interval. Initially, a 3D-CNN was developed based on fMRI single volumes of 266 samples from 81 subjects; then, we used neuron layers to combine clinical data with fMRI to improve the results., Results: At first, the CNN model demonstrated an AUC of 87.67% and an accuracy of 85.7%, then after combining clinical and rs-fMRI features, we observed the following improved scores: an AUC of 91.72%, an accuracy of 87.6%, a sensitivity of 75.58% and a specificity of 92.57%., Conclusion: Our developed algorithm managed to predict prognosis from MCI to AD with high levels of accuracy, proving the potential of DL approaches in solving the matter and the efficiency of integrating clinical information with imaging according to the proposed method., (© 2022. CARS.)

Detection of mental disorders such as schizophrenia (SZ) through investigating brain activities recorded via Electroencephalogram (EEG) signals is a promising field in neuroscience. This study presents a hybrid brain effective connectivity and deep learning framework for SZ detection on multichannel EEG signals. First, the effective connectivity matrix is measured based on the Transfer Entropy (TE) method that estimates directed causalities in terms of brain information flow from 19 EEG channels for each subject. Then, TE effective connectivity elements were represented by colors and formed a 19 × 19 connectivity image which, simultaneously, represents the time and spatial information of EEG signals. Created images are used to be fed into the five pre-trained Convolutional Neural Networks (CNN) models named VGG-16, ResNet50V2, InceptionV3, EfficientNetB0, and DenseNet121 as Transfer Learning (TL) models. Finally, deep features from these TL models equipped with the Long Short-Term Memory (LSTM) model for the extraction of most discriminative spatiotemporal features are used to classify 14 SZ patients from 14 healthy controls. Results show that the hybrid framework of pre-trained CNN-LSTM models achieved higher accuracy than pre-trained CNN models. The highest average accuracy and F1-score were achieved using the EfficientNetB0-LSTM model through the 10-fold cross-validation method equal to 99.90% and 99.93%, respectively. Therefore, the superior performance of the hybrid framework of brain effective connectivity images from EEG signals and pre-trained CNN-LSTM models show that the proposed method is highly capable of detecting SZ patients from healthy controls., (Copyright © 2022 Elsevier Ltd. All rights reserved.)

Acute lymphoblastic leukemia (ALL) is the most frequently leukemia and categorized into three morphological subtypes named L1, L2 and L3. Early diagnosis of ALL plays a key role in treatment procedure especially in the case of children. Several similarities between morphology of three subtypes ALL (L1, L2, L3) and lymphocyte subtypes (normal, reactive and atypical) as noncancerous cells have remained a high challenge. Diagnosis of ALL and lymphocyte subtypes are done by microscopic viewing examination of cells in the peripheral blood samples by hematologists. Since this exam is time-consuming, boring and dependent on the skill of the hematologists, automatic systems are desired to overcome these limitations. In this study, 312 microscopic images including 958 cells are obtained from blood samples of 7 normal subjects and 14 patients. The first step of proposed system is image enhancement to decreases the effects of various luminosity situations with transformation from RGB to HSV color space and then applying histogram equalization on V channel for equalizing the grey level of image lightness. Nuclei segmentation from the blood cell images is the second step and performed using fuzzy c-means (FCM) clustering. After identify cluster of nuclei, we performed opening and closing process in morphological operation binary in order to remove extra noises and fill some minor holes in the nuclei. Moreover, to discrete the link between nuclei, watershed transform was applied. Then, a set of quantitative features (five geometric features about the size and figure of a cell and 36 statistical features about the spatial arrangement of intensities of nuclei image) are extracted to characterize the properties of these nuclei. In the next step, due to high number of features, the best features are selected by exhaustive search of all of the subsets of features and 13 features are selected. The final step is the classification of L1, L2, L3, normal, reactive and atypical cells by applying Random Forest (RF) classifier and result in 98% accuracy. We compared RF classifier with two other commonly classifiers named: MultiLayer Perceptron (MLP), and multi-SVM classifier with more success especially for recognition of L1, normal and reactive cells. So, this system can be used as an assistant diagnostic tool for hematologists to recognize subtypes of ALL and lymphocyte.

Deep learning techniques have recently made considerable advances in the field of artificial intelligence. These methodologies can assist psychologists in early diagnosis of mental disorders and preventing severe trauma. Major Depression Disorder (MDD) is a common and serious medical condition whose exact manifestations are not fully understood. So, early discovery of MDD patients helps to cure or limit the adverse effects. Electroencephalogram (EEG) is prominently used to study brain diseases such as MDD due to having high temporal resolution information, and being a noninvasive, inexpensive and portable method. This paper has proposed an EEG-based deep learning framework that automatically discriminates MDD patients from healthy controls. First, the relationships among EEG channels in the form of effective brain connectivity analysis are extracted by Generalized Partial Directed Coherence (GPDC) and Direct directed transfer function (dDTF) methods. A novel combination of sixteen connectivity methods (GPDC and dDTF in eight frequency bands) was used to construct an image for each individual. Finally, the constructed images of EEG signals are applied to the five different deep learning architectures. The first and second algorithms were based on one and two-dimensional convolutional neural network (1DCNN-2DCNN). The third method is based on long short-term memory (LSTM) model, while the fourth and fifth algorithms utilized a combination of CNN with LSTM model namely, 1DCNN-LSTM and 2DCNN-LSTM. The proposed deep learning architectures automatically learn patterns in the constructed image of the EEG signals. The efficiency of the proposed algorithms is evaluated on resting state EEG data obtained from 30 healthy subjects and 34 MDD patients. The experiments show that the 1DCNN-LSTM applied on constructed image of effective connectivity achieves best results with accuracy of 99.24% due to specific architecture which captures the presence of spatial and temporal relations in the brain connectivity. The proposed method as a diagnostic tool is able to help clinicians for diagnosing the MDD patients for early diagnosis and treatment., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© Springer Nature B.V. 2020.)

Schizophrenia (SZ) is a severe disorder of the human brain which disturbs behavioral characteristics such as interruption in thinking, memory, perception, speech and other living activities. If the patient suffering from SZ is not diagnosed and treated in the early stages, damage to human behavioral abilities in its later stages could become more severe. Therefore, early discovery of SZ may help to cure or limit the effects. Electroencephalogram (EEG) is prominently used to study brain diseases such as SZ due to having high temporal resolution information, and being a noninvasive and inexpensive method. This paper introduces an automatic methodology based on transfer learning with deep convolutional neural networks (CNNs) for the diagnosis of SZ patients from healthy controls. First, EEG signals are converted into images by applying a time-frequency approach called continuous wavelet transform (CWT) method. Then, the images of EEG signals are applied to the four popular pre-trained CNNs: AlexNet, ResNet-18, VGG-19 and Inception-v3. The output of convolutional and pooling layers of these models are used as deep features and are fed into the support vector machine (SVM) classifier. We have tuned the parameters of SVM to classify SZ patients and healthy subjects. The efficiency of the proposed method is evaluated on EEG signals from 14 healthy subjects and 14 SZ patients. The experiments showed that the combination of frontal, central, parietal, and occipital regions applied to the ResNet-18-SVM achieved best results with accuracy, sensitivity and specificity of 98.60% ± 2.29, 99.65% ± 2.35 and 96.92% ± 2.25, respectively. Therefore, the proposed method as a diagnostic tool can help clinicians in detection of the SZ patients for early diagnosis and treatment.

Monitoring level of hypnosis is a major ongoing challenge for anesthetists to reduce anesthetic drug consumption, avoiding intraoperative awareness and prolonged recovery. This paper proposes a novel automated method for accurate assessing of the level of hypnosis with sevoflurane in 17 patients using the electroencephalogram signal. In this method, a set of distinctive features and a hierarchical classification structure based on support vector machine (SVM) methods, is proposed to discriminate the four levels of anesthesia (awake, light, general and deep states). The first stage of the hierarchical SVM structure identifies the awake state by extracting Shannon Permutation Entropy, Detrended Fluctuation Analysis and frequency features. Then deep state is identified by extracting the sample entropy feature; and finally light and general states are identified by extracting the three mentioned features of the first step. The accuracy of the proposed method of analyzing the brain activity during anesthesia is 94.11%; which was better than previous studies and also a commercial monitoring system (Response Entropy Index).

Quantifying brain dynamics during anesthesia is an important challenge for understanding the neurophysiological mechanisms of anesthetic drug effect. Several single channel Electroencephalogram (EEG) indices have been proposed for monitoring anesthetic drug effect. The most commonly used single channel commercial index is the Bispectral index (BIS). However, this monitor has shown some drawbacks. In this study, a nonlinear functional connectivity measure named Standardized Permutation Mutual Information (SPMI) is proposed to describe communication between two-channel EEG signals at frontal and temporal brain regions during a controlled propofol-induced anesthesia and recovery design from eight subjects. The SPMI index has higher correlation with estimated propofol effect-site concentration and has better ability to distinguish three anesthetic states of patient than the other functional connectivity indexes (cross-correlation, coherence, phase analysis) and also the BIS index. Moreover, the SPMI index has a faster reaction to the effect of drug concentration, less variability at the consciousness state and better robustness to noise than BIS., (© Springer Nature B.V. 2019.)

Several studies have already assessed brain network variations in multiple sclerosis (MS) patients and healthy controls (HCs). The underlying neural system's functioning is apparently too complicated, however. Therefore, the neural time series' analysis through new methods is the aim of any recent research. Functional magnetic resonance imaging (fMRI) is a prominent modality for investigating the human brain's neural substrate, especially when cognitive impairment occurs. The present study was an attempt to investigate the brain network's differences between MS patients and HCs using graph-theoretic measures constructed by an effective connectivity measure through statistical tests. The results of the significant measures were then evaluated through machine learning methods. To this end, we gathered blood-oxygen level dependent (BOLD) fMRI data of the participants during the execution of paced auditory serial addition test (PASAT). Granger causality analysis (GCA) was then employed between brain regions' time series on each subject in order to construct a brain network. Afterward, the Wilcoxon rank-sum test was implemented to find the alteration of brain networks between the mentioned groups. According to the results, Global flow coefficient was significantly different between HCs and patients. Moreover, MS disease impacted several areas of the brain including Hippocampus, Para Hippocampal, Thalamus, Cuneus, Superior temporal gyrus, Heschl, Caudate, Medial Frontal Superior Gyrus, Fusiform, Pallidum, and several parts of Cerebellum in centrality measures and local flow coefficient. Most of the obtained regions were related to the cognitive impacts of the disease. We also found the best subset of graph features by means of Fisher score, and classified them to evaluate the features strength for the discrimination of MS patients from HCs via several machine learning methods. Having used the combination of Wilcoxon rank-sum test and Fisher score, we were able to classify MS patients from HCs using linear support vector machine (SVM) with an accuracy of 95%. With regard to the few existing studies on brain network of MS patients, especially during a cognitive task execution, our findings showed that the selected graph measures by Wilcoxon rank-sum test and Fisher score from the GCA-based brain networks resulted in a promising classification accuracy., (Copyright © 2019 Elsevier Ltd. All rights reserved.)