392 results on '"Sam M Janes"'
Search Results
352. T2 MSCTRAIL as a Novel Cellular Therapy For Malignant Mesothelioma
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Elizabeth K. Sage, Sam M. Janes, Katrina McNulty, Krishna K. Kolluri, and Adam Giangreco
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Pulmonary and Respiratory Medicine ,education.field_of_study ,Pathology ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Population ,Mesenchymal stem cell ,TRAIL production ,Flow cytometry ,Viral vector ,Cell therapy ,chemistry.chemical_compound ,chemistry ,Cell culture ,Cancer research ,Medicine ,DAPI ,education ,business - Abstract
Background Malignant pleural mesothelioma (MPM) is an aggressive fatal cancer with no effective treatments. Mesenchymal stem cells (MSCs) migrate and incorporate into tumour stroma making them good vehicles for the delivery ofanti-cancer therapies. TNF-relatedapoptosis inducing ligand (TRAIL) selectively induces apoptosis in malignant cells without affecting healthy tissues. This study aimed to test whether MSCs modified to express TRAIL (MSCTRAIL) could be a successful cell therapy for MPM. Methods Human MSCs were transduced with a lentiviral vector containing TRAIL IRES-GFP under the control of a tetracycline dependent promoter. Successful transduction was measured using flow cytometry and TRAIL expression was confirmed by immuno-blotting and ELISA. The biological activity of MSCTRAIL was determined using co-culture experiments. DiI stained MPM cells were plated in a 1:1 ratio with MSCTRAIL cells. TRAIL production was activated and cells were treated for 48 hours. Both cells and supernatant were collected and stained with Annexin V and DAPI to detect apoptosis and death respectively on flow cytometry. To test the effect of MSCTRAIL in vivo a bioluminescent tumour model was established. Plasmid containing fireflyluciferase and YFP was expanded and the correct sequences confirmed by restriction digest. Lentivirus was produced, viral titres were determined using flow cytometry and MPM cells were transduced (MPMLuc). A pure population was generated using hygromycin selection. 80,000 MPMLuc cells were injected into the pleural cavity of NOD/SCID mice and their growth was assessed using an IVIS Lumina system to detect bioluminescence. 1 million MSCTRAIL cells were delivered via tail vein injections on days 5, 9, 12, 15 and 18 post tumour inoculation and bioluminescence was measured twice weekly. Results MSCs were successfully transduced with TRAIL with 96% efficiency and TRAIL production was confirmed by ELISA. Seven human MPM cell lines were tested with 6/7 (86%) being sensitive to MSCTRAIL. In vivo delivery of MSCTRAIL resulted in a significant reduction in MPM tumour growth. Conclusions Delivery of TRAIL via MSCs causes a significant reduction in MPM tumour growth and is a potential novel cellular therapy for this currently incurable disease.
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- 2012
353. S130 Exogenous Macrophages Are Retained in Mouse Lungs After Injury and Target Therapeutic Transgenes to the Injured Lung Parenchyma
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Chris J. Scotton, Sam M. Janes, Elizabeth K. Sage, Katrina McNulty, and R Alexander
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Lung ,business.industry ,Interstitial lung disease ,respiratory system ,Lung injury ,Bleomycin ,medicine.disease ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Fibrosis ,Parenchyma ,Pulmonary fibrosis ,Medicine ,Macrophage ,business - Abstract
Introduction Pulmonary fibrosis evolves in response to epithelial injury in a number of lung diseases, and carries a poor prognosis; novel therapies are urgently needed. The epithelial mitogen keratinocyte growth factor (KGF) has been shown to prevent fibrosis in a number of animal models however its therapeutic utility is limited by its short half-life. There is a growing interest in cell therapy approaches, and we hypothesised that macrophages could be used as vehicles to target KGF therapy to injured lung. Methods Lentiviral vectors expressing luciferase, KGF and GFP (control) were generated and used to transduce the IC-21 macrophage cell line. Appropriate transgene expression was confirmed. KGF macrophages were co-cultured with primary mouse tracheal epithelial cells in a proliferation bioassay. Luciferase-expressing macrophages were tracked longitudinally using bioluminescence imaging after oropharyngeal delivery to the lungs of mice given bleomycin to induce injury, or saline control. Immunostaining was used to localise macrophages within lung sections. KGF and GFP-macrophages were delivered during bleomycin-induced lung injury; endpoint measures included lung histology, micro-CT analysis, and quantification of inflammatory cell infiltrates, vascular leak, lung collagen by HPLC, and inflammatory and fibrotic mediators by ELISA and qPCR. Results Exogenously delivered macrophages were retained in the lungs of bleomycin-injured mice, but not uninjured controls, when given during either the inflammatory or fibrotic phases of injury, and localised to injured lung parenchyma. KGF-transduced macrophages induced proliferation of mouse tracheal epithelial cells during co-culture, but delivery to bleomycin-injured mice was not associated with overall improvements in endpoints when delivered during either the inflammatory or fibrotic phases of injury. Delivery of macrophages per se was associated with an increase in inflammatory mediators consistent with classical M1 macrophage activation, which may have off-set any beneficial effects of KGF-transduced macrophages. Conclusions Exogenously delivered macrophages are preferentially retained in injured lung and show potential as vehicles to target therapeutic transgenes by localising to damaged areas. Whilst KGF-transduced macrophages induced epithelial proliferation in vitro, any protective effects in vivo may have been negated by the exacerbatory effects of macrophage delivery. Future work will determine whether ex vivo manipulation of macrophage phenotype can confer therapeutic benefit.
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- 2012
354. Integrated 18 F-Fluorodeoxyglucose–Positron Emission Tomography/Dynamic Contrast-Enhanced Computed Tomography to Phenotype Non–Small Cell Lung Carcinoma
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Manu Shastry, Peter J. Ell, Sam M. Janes, Thida Win, Raymond Endozo, Marie Meagher, Ashley M. Groves, and Kenneth A. Miles
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Male ,Lung Neoplasms ,medicine.medical_treatment ,Biomedical Engineering ,Standardized uptake value ,Multimodal Imaging ,Article ,Statistics, Nonparametric ,Targeted therapy ,Cohort Studies ,Vascularity ,Fluorodeoxyglucose F18 ,Carcinoma, Non-Small-Cell Lung ,medicine ,Carcinoma ,Humans ,Radiology, Nuclear Medicine and imaging ,Prospective Studies ,Stage (cooking) ,Lung cancer ,Aged ,Neoplasm Staging ,Lung ,business.industry ,Prognosis ,Condensed Matter Physics ,medicine.disease ,Molecular Imaging ,Phenotype ,medicine.anatomical_structure ,Positron-Emission Tomography ,Molecular Medicine ,Female ,Radiopharmaceuticals ,medicine.symptom ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Perfusion ,Biotechnology - Abstract
We applied modern molecular and functional imaging to the pretreatment assessment of lung cancer using combined dynamic contrast-enhanced computed tomography (DCE-CT) and (18)F-fluorodeoxyglucose-positron emission tomography ((18)F-FDG-PET) to phenotype tumors. Seventy-four lung cancer patients were prospectively recruited for (18)F-FDG-PET/DCE-CT using PET/64-detector CT. After technical failures, there were 64 patients (35 males, 29 females; mean age [± SD] 67.5 ± 7.9 years). DCE-CT yielded tumor peak enhancement (PE) and standardized perfusion value (SPV). The uptake of (18)F-FDG quantified on PET as the standardized uptake value (SUV(max)) assessed tumor metabolism. The median values for SUV(max) and SPV were used to define four vascular-metabolic phenotypes. There were associations (Spearman rank correlation [rs]) between tumor size and vascular-metabolic parameters: SUV(max) versus size (rs = .40, p = .001) and SUV/PE versus size (r = .43, p.001). Patients with earlier-stage (I-IIA, n = 30) disease had mean (± SD) SUV/PE 0.36 ± 0.28 versus 0.56 ± 0.32 in later-stage (stage IIB-IV, n = 34) disease (p = .007). The low metabolism with high vascularity phenotype was significantly more common among adenocarcinomas (p = .018), whereas the high metabolism with high vascularity phenotype was more common among squamous cell carcinomas (p = .024). Other non-small cell lung carcinoma tumor types demonstrated a high prevalence of the high metabolism with low vascularity phenotype (p = .028). We show that tumor subtypes have different vascular-metabolic associations, which can be helpful clinically in managing lung cancer patients to hone targeted therapy.
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- 2012
355. Stem Cell Implants for Cancer Therapy: TRAIL-Expressing Mesenchymal Stem Cells Target Cancer CellsIn Situ
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Elizabeth K. Sage, Michaela R. Reagan, David L. Kaplan, Sam M. Janes, Douglas W. McMillin, Irene M. Ghobrial, Constantine S. Mitsiades, and F. Philipp Seib
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Cancer Research ,Pathology ,medicine.medical_specialty ,Stromal cell ,business.industry ,Mesenchymal stem cell ,Cell ,TNF-related apoptosis-inducing ligand ,medicine.disease ,Metastasis ,Tissue therapy ,medicine.anatomical_structure ,Oncology ,Tissue engineering ,Cancer cell ,medicine ,Cancer research ,Mesenchymal stem cells ,Original Article ,Tumor necrosis factor alpha ,Breast neoplasms ,Stem cell ,business - Abstract
Purpose: Tumor-specific delivery of tumor necrosis factor-related apoptosis-inducing ligand (TRAIL), an apoptosis-inducing peptide, at effective doses remains challenging. Herein we demonstrate the utility of a scaffold-based delivery system for sustained therapeutic cell release that capitalizes on the tumor-homing properties of mesenchymal stem cells (MSCs) and their ability to express genetically-introduced therapeutic genes. Methods: Implants were formed from porous, biocompatible silk scaffolds seeded with full length TRAIL-expressing MSCs (FLT-MSCs). under a doxycycline inducible promoter. In vitro studies with FLTMSCs demonstrated TRAIL expression and antitumor effects on breast cancer cells. Next, FLT-MSCs were administered to mice using three administration routes (mammary fat pad co-injections, tail vein injections, and subcutaneous implantation on scaffolds). Results: In vitro cell-specific bioluminescent imaging measured tumor cell specific growth in the presence of stromal cells and demonstrated FLT-MSC inhibition of breast cancer growth. FLT-MSC implants successfully decreased bone and lung metastasis, whereas liver metastasis decreased only with tail vein and co-injection administration routes. Average tumor burden was decreased when doxycycline was used to induce TRAIL expression for co-injection and scaffold groups, as compared to controls with no induced TRAIL expression. Conclusion: This implant-based therapeutic delivery system is an effective and completely novel method of anticancer therapy and holds great potential for clinical applications.
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- 2012
356. 55 Suitability of EBUS-TBNA specimens for the subtyping and genotyping of non-small cell lung cancer: a multi-centre pragmatic implementation study of 774 patients
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Vandana Jeebun, R. Harrison, Joanna L Brown, G. Kocjan, Sam M. Janes, Neal Navani, Robert C. Rintoul, B. Ng, Mary Falzon, M. Munavvar, and Ian Woolhouse
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Pulmonary and Respiratory Medicine ,Ebus tbna ,Oncology ,Cancer Research ,medicine.medical_specialty ,Pathology ,business.industry ,medicine.disease ,Subtyping ,Internal medicine ,medicine ,Non small cell ,Multi centre ,Lung cancer ,business ,Genotyping - Published
- 2012
357. S58 Beta-Catenin determines tracheal cell fate and squamous lung cancer progression by modulating intercellular adhesiveness
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Fiona M. Watt, Jeremy George, K Groot, E Ilieva, Adam Giangreco, C Vickers, L Lu, Andrew G. Nicholson, Sam M. Janes, and Elizabeth K. Sage
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Beta-catenin ,biology ,Cell growth ,Cell ,Cell fate determination ,medicine.disease ,Directed differentiation ,medicine.anatomical_structure ,Cancer research ,biology.protein ,medicine ,Stem cell ,Lung cancer ,Intracellular - Abstract
Human lung cancers including squamous cell carcinoma (SCC) are a leading cause of death, and while evidence suggests that basal stem cells drive SCC initiation and progression, the mechanisms regulating these processes remain unknown. In this study we show that β-catenin signalling regulates basal stem cell fate and subsequent SCC progression. In a cohort of preinvasive SCCs we established that elevated basal stem cell β-catenin signalling is positively associated with increased disease severity, epithelial proliferation, and reduced intercellular adhesiveness. We demonstrate that transgene-mediated β-catenin inhibition within keratin 14-expressing basal stem cells delayed normal airway repair while basal cell-specific β-catenin activation increased cell proliferation, directed differentiation, and promoted an epithelial-to-mesenchymal transition (EMT) that included increased Snail transcription and reduced E-cadherin-mediated adhesiveness. These effects were recapitulated in normal human bronchial epithelial cells in vitro following both pharmacological β-catenin activation and E-cadherin inhibition, and mirrored our findings in preinvasive SCCs. Overall this data shows that airway stem cell β-catenin modulates cell adhesiveness to determine cell fate and its mis-expression is a key step in the development of human lung cancer.
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- 2011
358. S60 Mesenchymal stem cells expressing TRAIL induce apoptosis in malignant pleural mesothelioma
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Adam Giangreco, Krishna K. Kolluri, Sam M. Janes, and Elizabeth K. Sage
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Pulmonary and Respiratory Medicine ,Programmed cell death ,Pathology ,medicine.medical_specialty ,medicine.diagnostic_test ,Mesenchymal stem cell ,Biology ,TRAIL production ,Flow cytometry ,chemistry.chemical_compound ,chemistry ,Cell culture ,Apoptosis ,Cancer research ,medicine ,DAPI ,Cytometry - Abstract
Background Malignant pleural mesothelioma (MPM) is an aggressive fatal cancer caused by asbestos exposure. Current treatments are ineffective with an average survival of 4–18 months. Mesenchymal stem cells (MSCs) migrate to tumours and incorporate into tumour stroma making them good vehicles for the delivery of anti-cancer therapies. TNF-related apoptosis inducing ligand (TRAIL) is a transmembrane protein that selectively induces apoptosis in malignant cells without affecting healthy tissues. In this study I tested the hypothesis that MSCs modified to express TRAIL (MSCTRAIL) would cause MPM cell death. Methods Human MSCs were transduced with a lentiviral vector containing TRAIL IRES-GFP under the control of a tetracycline dependent promoter. Successful transduction was measured using flow cytometry and immunoblotting. The biological activity of MSCTRAIL was determined using co-culture experiments. 5×10 5 MPM cells were stained withDiI and plated with 5×10 5 MSCTRAIL cells. After 24 h doxycycline (10 μg/ml) was added to induce TRAIL production and left for 48 h. Both cells and supernatant were collected and stained with Annexin V and DAPI to detect apoptosis and death respectively onflow cytometry. Results MSCs were successfully transduced with TRAIL with 96% showing GFP positivity on flow cytometry. Seven human MPM cell lines were tested with 6/7 (86%) being sensitive to MSCTRAIL. JU77 was highly sensitive with an increase in apoptosis from 10.32±2.34 to 48.73±4.3 (percentage ± SEM, p≤0.0001), while MSTO-211H and ONE 58 showed increases from 3.46±0.81to 27.68±1.1 and 8.92±0.05 to 32.93±1.08 respectively (p≤0.001). Conclusions MSCs can be successfully transduced to produce TRAIL and can induce significant levels of apoptosis in the majority of MPM cell lines tested.
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- 2011
359. S73 Macrophages as vehicles for delivering cell therapy to injured lung
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Elizabeth K. Sage, Katrina McNulty, Rachel C. Chambers, Chris J. Scotton, and Sam M. Janes
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Lung ,Membrane permeability ,medicine.diagnostic_test ,business.industry ,Inflammation ,respiratory system ,Lung injury ,Bleomycin ,respiratory tract diseases ,Cell therapy ,chemistry.chemical_compound ,medicine.anatomical_structure ,Bronchoalveolar lavage ,chemistry ,medicine ,Macrophage ,medicine.symptom ,business - Abstract
Introduction Injury to the alveolar epithelium underlies a number of important lung diseases, exemplified by the syndromes of acute lung injury and acute respiratory distress syndrome, which currently have a poor prognosis. Keratinocyte growth factor (KGF) is a mitogen for, and exerts beneficial effects on, type II alveolar epithelial cells. Pre-treatment with KGF is associated with improvements in outcomes in animal models of lung injury, but the use of recombinant KGF as a clinical therapy is limited by its short bioavailability and lack of specificity. We sought to determine whether macrophages could be used as vehicles to deliver KGF therapy to the injured lung. Methods Macrophages from a murine macrophage cell line (IC-21) were transduced with a lentiviral vector expressing KGF and the reporter gene GFP. Mice were given oropharyngeal (OP) bleomycin to induce lung injury. On days one and three after induction of lung injury, mice were given 3×10 6 KGF-transduced IC-21 cells (or controls) by OP instillation. Mice were sacrificed on day 5, and bronchoalveolar lavage fluid (BALF) was harvested and lungs were processed for histology. For in vivo tracking experiments, IC-21 macrophages were transduced with a lentiviral vector expressing luciferase and mice were imaged longitudinally using real-time bioluminescence imaging. Results KGF-expression was confirmed in KGF-lentivirus-transduced macrophages, however delivery of these cells was not associated with improvements in measures of alveolar-capillary membrane permeability (BALF albumin) or inflammation (total and differential cell counts) after lung injury. Cells expressing GFP were recovered in BALF, and immunohistochemistry showed groups of cells close to conducting airways. Longitudinal imaging of mice after OP delivery of luciferase-transduced IC-21 cells suggested that cells initially localised to the lungs, but did not persist at 48 h after delivery. Conclusions KGF-expressing macrophages can be generated using lentiviral vectors, but therapeutic delivery of these cells to the lungs did not improve measured outcomes in the mouse bleomycin lung injury model. Longitudinal imaging suggested that the lack of therapeutic efficacy of KGF-transduced macrophages may be due to their limited survival, and future work should focus on optimising macrophage delivery and survival in vivo.
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- 2011
360. Pulmonary mass in a 19-year-old male
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Sam M. Janes, David Lawrence, Laura-Jane Smith, Irfan Kayani, Mary Falzon, Arrigo Capitanio, and Neal Navani
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Lung ,business.industry ,medicine.disease ,Surgery ,medicine.anatomical_structure ,Cardiothoracic surgery ,Wheeze ,medicine ,Salbutamol ,Respiratory system ,medicine.symptom ,Young adult ,Pulmonary Mass ,business ,medicine.drug ,Asthma - Abstract
A 19-year-old student who had never smoked presented with a 6-month history of cough, wheeze, sputum production and generalised fatigue. His exercise tolerance was unaffected and he continued to play rugby competitively. He had a history of childhood asthma and received treatment with inhaled salbutamol with no effect. A chest x-ray revealed a round density at the base of the right lung. A CT chest was performed (figure 1) and subsequently a 68Ga-DOTATATE (1,4,7,10-tetraazacyclododecane-N,N′,N″,N‴-tetraacetic acid-d-Phe(1),Tyr(3)-octreotate) PET-CT (positron emission tomography-CT) was arranged, demonstrating that the mass had a maximum standardised uptake value of 6.6 (figure 2). He was referred for a right lower lobectomy. Histological evaluation of the lobectomy …
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- 2011
361. Lung Cancer Staging With Minimally Invasive Endoscopic Techniques
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Neal Navani, Stephen G. Spiro, and Sam M. Janes
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medicine.medical_specialty ,Text mining ,business.industry ,medicine ,General Medicine ,Radiology ,Lung cancer staging ,business - Published
- 2008
362. Contemporary Issues in Cancer Imaging: Lung Cancer
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Neal Navani and Sam M. Janes
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Cancer Research ,medicine.medical_specialty ,Pathology ,medicine.diagnostic_test ,business.industry ,media_common.quotation_subject ,medicine.medical_treatment ,education ,Disease ,medicine.disease ,humanities ,Book Review ,Radiation therapy ,Presentation ,Oncology ,Multidisciplinary approach ,Positron emission tomography ,Health care ,medicine ,Medical physics ,Stage (cooking) ,business ,Lung cancer ,media_common - Abstract
Imaging has a key role in the multidisciplinary management of lung cancer, which remains the leading cause of cancer mortality worldwide. Rapid advances in imaging techniques for the diagnosis and staging of lung cancer make this book timely, not just for radiologists but also for other healthcare workers managing patients with lung cancer. This relatively short hardback book, one of the Contemporary Issues in Cancer Imaging series, provides a tour of all the aspects of lung cancer from presentation, diagnosis and staging, to management. It begins with the clinical features followed by a chapter on the pathological differentiation of lung cancer. Histological methods of subtyping are described, including the use of immunohistochemistry. This second chapter also has 16 pages of coloured photographs that are referred to during the course of the book. The main role of imaging in the multidisciplinary meeting is for the diagnosis and staging of disease, which determine the treatment options. Non-invasive and invasive methods for staging are discussed, including the relatively novel techniques of endoscopic and endobronchial ultrasound. The advent of multi-detector row CT, accurate volumetric analysis and in particular positron emission tomography (PET) represent significant advances in the way patients are managed. A chapter on the clinical aspects of PET scanning demonstrates its role in the staging of non-small-cell lung cancer, planning of radiotherapy and evaluation of recurrence, as well as highlighting some of the issues that PET scans can raise. The book covers a wide range of basics and adds up-to-date description of the latest techniques and their uses. The nature of the topic, however, means that the field is rapidly advancing and unfortunately discussion of the most recent papers on CT screening is already notable in its absence. The chapter dedicated to screening for lung cancer is however well balanced. The problems of over-diagnosis bias, lead-time bias and the management of indeterminate nodules are discussed. The remainder of the book contains excellent reviews on the management of lung cancer. The chapters on radiotherapy and chemotherapy provide evidence-based information that the non-oncologically trained members of the multidisciplinary team would find particularly valuable. The final chapter on surgical management details patient ‘resectability' according to disease stage, as well as the use of neoadjuvant chemotherapy, but does not include information on the complex area of patient operability according to their physiological status. The authors of all nine chapters are experts in their field and the text is referenced with articles up to 2005. Although most chapters begin with a conventional introduction (overlap, which may have been avoided with a specific chapter on epidemiology), the book is well written and the content easy to assimilate. Each chapter is clearly divided by sub-headings, allowing the reader to rapidly navigate to an area of interest. The key references provided are an excellent source for more detailed reading. It is not within the scope of this book to provide a comprehensive review of lung cancer. It successfully provides a concise overview that radiologists, clinicians, pathologists, trainees and other healthcare professionals involved in the multidisciplinary management of lung cancer should find useful.
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- 2008
363. Crack inhalation induced pneumomediastinum
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P W Ind, J Jackson, and Sam M. Janes
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Lung ,medicine.diagnostic_test ,Inhalation ,business.industry ,Cocaine related disorders ,Chest pain ,medicine.disease ,respiratory tract diseases ,Surgery ,Tomography x ray computed ,medicine.anatomical_structure ,Anesthesia ,mental disorders ,Mediastinal Emphysema ,Medicine ,Pneumomediastinum ,medicine.symptom ,business ,Chest radiograph - Abstract
“Crack lung” is an acute pulmonary syndrome with a spectrum of clinical and histopathological findings. Smoking crack, a potent and highly addictive crystalline form of cocaine, usually involves deep inspiration followed by the valsalva manoeuvre and coughing. A 30 year old man presented 8 hours after smoking crack with severe chest pain and coughing. His chest radiograph showed …
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- 2004
364. The αvβ5 Integrin Induces Anoikis in Squamous Cell Carcinoma (SCC) cells by Activating the Intrinsic and Extrinsic Death Pathways and Inhibiting An Akt/PKB Survival Signal
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Sam M. Janes and F M Watt
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Chemistry ,αvβ5 integrin ,Cancer research ,Anoikis ,Basal cell ,General Medicine ,Signal ,Protein kinase B - Published
- 2003
365. Therapeutic potential of stem cells in lung disease: progress and pitfalls.
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Michael R. Loebinger, Susana Aguilar, and Sam M. Janes
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STEM cells ,CELLULAR therapy ,LUNG disease treatment ,EPITHELIAL cells ,REGENERATION (Biology) ,CLINICAL trials - Abstract
There has been increasing excitement over the last few years with the suggestion that exogenous stem cells may offer new treatment options for a wide range of diseases. Within respiratory medicine, these cells have been shown to have the ability to differentiate and function as both airway and lung parenchyma epithelial cells in both in vitro and increasingly in vivo experiments. The hypothesis is that these cells may actively seek out damaged tissue to assist in the local repair, and the hope is that their use will open up new cellular and genetic treatment modalities. Such is the promise of these cells that they are being rushed from the benchside to the bedside with the commencement of early clinical trials. However, important questions over their use remain and the field is presently littered with controversy and uncertainty. This review evaluates the progress made and the pitfalls encountered to date, and critically assesses the evidence for the use of stem cells in lung disease. [ABSTRACT FROM AUTHOR]
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- 2008
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366. Clinical response to the addition of clarithromycin in Pneumocystis carinii pneumonia refractory to high dose co-trimoxazole
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David Price, N. P. Hollings, Janice Main, Richard Coker, and Sam M. Janes
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Pharmacology ,Microbiology (medical) ,medicine.medical_specialty ,business.industry ,Drug resistance ,medicine.disease ,Trimethoprim ,Pneumonia ,Infectious Diseases ,Pharmacotherapy ,Refractory ,Pneumocystis carinii ,Internal medicine ,Clarithromycin ,Immunology ,medicine ,Pharmacology (medical) ,business ,medicine.drug - Published
- 1994
367. Synthetic data for privacy-preserving clinical risk prediction
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Zhaozhi Qian, Thomas Callender, Bogdan Cebere, Sam M. Janes, Neal Navani, and Mihaela van der Schaar
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Synthetic data ,Machine learning ,Risk-prediction ,Medicine ,Science - Abstract
Abstract Synthetic data promise privacy-preserving data sharing for healthcare research and development. Compared with other privacy-enhancing approaches—such as federated learning—analyses performed on synthetic data can be applied downstream without modification, such that synthetic data can act in place of real data for a wide range of use cases. However, the role that synthetic data might play in all aspects of clinical model development remains unknown. In this work, we used state-of-the-art generators explicitly designed for privacy preservation to create a synthetic version of ever-smokers in the UK Biobank before building prognostic models for lung cancer under several data release assumptions. We demonstrate that synthetic data can be effectively used throughout the medical prognostic modeling pipeline even without eventual access to the real data. Furthermore, we show the implications of different data release approaches on how synthetic biobank data could be deployed within the healthcare system.
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- 2024
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368. Invasive pulmonary aspergillosis in an insulin-dependent diabetic
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K.F. Barker, V. Mak, Derek Bell, and Sam M. Janes
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Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Antifungal Agents ,Diabetic ketoacidosis ,Neutropenia ,Aspergillosis ,Gastroenterology ,Organ transplantation ,Diabetic Ketoacidosis ,Amphotericin B ,Internal medicine ,Immunopathology ,Diabetes mellitus ,medicine ,Humans ,Mycosis ,Lung Diseases, Fungal ,business.industry ,Respiratory disease ,Middle Aged ,medicine.disease ,Immunology ,Drug Therapy, Combination ,Itraconazole ,Tomography, X-Ray Computed ,business - Abstract
Invasive pulmonary aspergillosis (IPA) occurs almost exclusively in patients with profound neutropenia (l), often secondary to the cytotoxic therapy used in the treatment of haematological malignancy or patients undergoing organ transplantation. Patients with severe defects in cellmediated immunity may also develop IPA (2). More rarely, cases have been reported in non-immunocompromised individuals, associated with alcoholism, diabetes mellitus, steroid therapy and influenza virus infection (3-7). Mortality in patients with invasive aspergillosis may be as high as 90% despite antifungal therapy (8-12). We report a patient with diabetic ketoacidosis, who rapidly developed respiratory problems, but with early diagnosis of invasive pulmonary aspergillosis and aggressive treatment with dual antifungal therapy he survived, although he required 57 days in ITU.
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369. Incorporation of paramagnetic, fluorescent and PET/SPECT contrast agents into liposomes for multimodal imaging
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Sam M. Janes, Tammy L. Kalber, Helen C. Hailes, Nick Mitchell, Samantha L. Chalker, Adam Badar, Alethea B. Tabor, Katherine L. Ordidge, Margaret S. Cooper, Philip J. Blower, Karen P. Shaw, Kavitha Sunassee, and Mark F. Lythgoe
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DEG1SL, dioleylethyleneglycol-1-succidimidyl linker ,Gadolinium ,Contrast Media ,DEG3SL, dioleylethyleneglycol-3-succidimidyl linker ,02 engineering and technology ,DOTA, 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid ,01 natural sciences ,chemistry.chemical_compound ,Nuclear magnetic resonance ,DEG6SL, dioleylethyleneglycol-6-succidimidyl linker ,Liposome ,021001 nanoscience & nanotechnology ,Fluorescence ,Magnetic Resonance Imaging ,Imaging agent ,PEG (poly(ethylene)glycol) ,Mechanics of Materials ,0210 nano-technology ,DOTA-lipid ,SPECT, single-photon emission tomography ,DSPE-PEG2000, 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[carboxy(polyethyleneglycol)2000] ,Biophysics ,chemistry.chemical_element ,Bioengineering ,ITLC, instant thin layer chromatography ,010402 general chemistry ,DODEG4, DiOleylDimethyl Ethylene Glycol 4 ,Nanocapsules ,Article ,PET, positron emission tomography ,MR, magnetic resonance ,Biomaterials ,EPR, enhanced permeability and retention effect ,DOTA ,Chelation ,n-EG, n-ethylene glycol ,PEG, polyethylene glycol ,DTPA, diethylenetriamine pentacetic acid ,Tomography, Emission-Computed, Single-Photon ,SPECT (single-photon emission tomography) ,MRI (magnetic resonance imaging) ,FL-DHPE, N-(fluorescein-5-thiocarbamoyl)-1,2-dihexa-decanoyl-sn-glycero-3-phosphoethanolamine ,0104 chemical sciences ,chemistry ,Microscopy, Fluorescence ,Subtraction Technique ,Liposomes ,Ceramics and Composites ,DOTMA, N-[1-(2,3-dioleyloxy)propyl]-N,N,N-trimethylammonium chloride ,DOPE, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine ,HBTU, O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate ,DCC, N,N-dicyclohexylcarbodiimide ,RES, reticuloendothelial system ,Conjugate - Abstract
A series of metal-chelating lipid conjugates has been designed and synthesized. Each member of the series bears a 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid (DOTA) macrocycle attached to the lipid head group, using short n-ethylene glycol (n-EG) spacers of varying length. Liposomes incorporating these lipids, chelated to Gd(3+), (64)Cu(2+), or (111)In(3+), and also incorporating fluorescent lipids, have been prepared, and their application in optical, magnetic resonance (MR) and single-photon emission tomography (SPECT) imaging of cellular uptake and distribution investigated in vitro and in vivo. We have shown that these multimodal liposomes can be used as functional MR contrast agents as well as radionuclide tracers for SPECT, and that they can be optimized for each application. When shielded liposomes were formulated incorporating 50% of a lipid with a short n-EG spacer, to give nanoparticles with a shallow but even coverage of n-EG, they showed good cellular internalization in a range of tumour cells, compared to the limited cellular uptake of conventional shielded liposomes formulated with 7% 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[carboxy(polyethyleneglycol)(2000)] (DSPE-PEG2000). Moreover, by matching the depth of n-EG coverage to the length of the n-EG spacers of the DOTA lipids, we have shown that similar distributions and blood half lives to DSPE-PEG2000-stabilized liposomes can be achieved. The ability to tune the imaging properties and distribution of these liposomes allows for the future development of a flexible tri-modal imaging agent.
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370. Interpolation-split: a data-centric deep learning approach with big interpolated data to boost airway segmentation performance
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Wing Keung Cheung, Ashkan Pakzad, Nesrin Mogulkoc, Sarah Helen Needleman, Bojidar Rangelov, Eyjolfur Gudmundsson, An Zhao, Mariam Abbas, Davina McLaverty, Dimitrios Asimakopoulos, Robert Chapman, Recep Savas, Sam M. Janes, Yipeng Hu, Daniel C. Alexander, John R. Hurst, and Joseph Jacob
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Computer engineering. Computer hardware ,TK7885-7895 ,Information technology ,T58.5-58.64 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
Abstract The morphology and distribution of airway tree abnormalities enable diagnosis and disease characterisation across a variety of chronic respiratory conditions. In this regard, airway segmentation plays a critical role in the production of the outline of the entire airway tree to enable estimation of disease extent and severity. Furthermore, the segmentation of a complete airway tree is challenging as the intensity, scale/size and shape of airway segments and their walls change across generations. The existing classical techniques either provide an undersegmented or oversegmented airway tree, and manual intervention is required for optimal airway tree segmentation. The recent development of deep learning methods provides a fully automatic way of segmenting airway trees; however, these methods usually require high GPU memory usage and are difficult to implement in low computational resource environments. Therefore, in this study, we propose a data-centric deep learning technique with big interpolated data, Interpolation-Split, to boost the segmentation performance of the airway tree. The proposed technique utilises interpolation and image split to improve data usefulness and quality. Then, an ensemble learning strategy is implemented to aggregate the segmented airway segments at different scales. In terms of average segmentation performance (dice similarity coefficient, DSC), our method (A) achieves 90.55%, 89.52%, and 85.80%; (B) outperforms the baseline models by 2.89%, 3.86%, and 3.87% on average; and (C) produces maximum segmentation performance gain by 14.11%, 9.28%, and 12.70% for individual cases when (1) nnU-Net with instant normalisation and leaky ReLU; (2) nnU-Net with batch normalisation and ReLU; and (3) modified dilated U-Net are used respectively. Our proposed method outperformed the state-of-the-art airway segmentation approaches. Furthermore, our proposed technique has low RAM and GPU memory usage, and it is GPU memory-efficient and highly flexible, enabling it to be deployed on any 2D deep learning model.
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- 2024
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371. Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models
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Robert E. Hynds, Ariana Huebner, David R. Pearce, Mark S. Hill, Ayse U. Akarca, David A. Moore, Sophia Ward, Kate H. C. Gowers, Takahiro Karasaki, Maise Al Bakir, Gareth A. Wilson, Oriol Pich, Carlos Martínez-Ruiz, A. S. Md Mukarram Hossain, Simon P. Pearce, Monica Sivakumar, Assma Ben Aissa, Eva Grönroos, Deepak Chandrasekharan, Krishna K. Kolluri, Rebecca Towns, Kaiwen Wang, Daniel E. Cook, Leticia Bosshard-Carter, Cristina Naceur-Lombardelli, Andrew J. Rowan, Selvaraju Veeriah, Kevin Litchfield, Philip A. J. Crosbie, Caroline Dive, Sergio A. Quezada, Sam M. Janes, Mariam Jamal-Hanjani, Teresa Marafioti, TRACERx consortium, Nicholas McGranahan, and Charles Swanton
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Science - Abstract
Abstract Patient-derived xenograft (PDX) models are widely used in cancer research. To investigate the genomic fidelity of non-small cell lung cancer PDX models, we established 48 PDX models from 22 patients enrolled in the TRACERx study. Multi-region tumor sampling increased successful PDX engraftment and most models were histologically similar to their parent tumor. Whole-exome sequencing enabled comparison of tumors and PDX models and we provide an adapted mouse reference genome for improved removal of NOD scid gamma (NSG) mouse-derived reads from sequencing data. PDX model establishment caused a genomic bottleneck, with models often representing a single tumor subclone. While distinct tumor subclones were represented in independent models from the same tumor, individual PDX models did not fully recapitulate intratumor heterogeneity. On-going genomic evolution in mice contributed modestly to the genomic distance between tumors and PDX models. Our study highlights the importance of considering primary tumor heterogeneity when using PDX models and emphasizes the benefit of comprehensive tumor sampling.
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- 2024
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372. Use of a decellularised dermis scaffold and human bronchial epithelial cells to tissue engineer airway mucosa suitable for tracheal transplantation
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Martin A. Birchall, Robert E. Hynds, Colin R. Butler, Sam M. Janes, Nicholas Hamilton, Dani Do Hyang Lee, and Kate H.C. Gowers
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Pathology ,medicine.medical_specialty ,business.industry ,Video microscopy ,Human skin ,General Medicine ,Epithelium ,Staining ,Transplantation ,Cytokeratin ,medicine.anatomical_structure ,Dermis ,medicine ,Respiratory system ,business - Abstract
Background Tracheal reconstruction relies on the use of a split skin graft to re-epithelialise the mucosal layer. Since split skin grafts are made up of a keratinising stratified epithelial layer, sloughing occurs within the airway with mucus retention and subsequent airway obstruction. The delivery of a graft with the same mucociliary function as the native airway would overcome these limitations and greatly improve the safety and effectiveness of this type of surgery. We aimed to generate a transplantable tissue-engineered respiratory epithelial graft with mucociliary function. Methods Cadaveric human skin was decellularised and the epidermal layer removed. Human bronchial epithelial cells were seeded with human respiratory fibroblasts onto the dermis at densities of 1 × 10 6 per cm 2 and 1 × 10 4 per cm 2 , respectively, and cultured at air–liquid interface in a transwell system. At 3 weeks, the constructs were transplanted onto a decellularised trachea that had been prevascularised within a muscle wrap in an immunosuppressed New Zealand White rabbit. Findings After 3 weeks of air–liquid interface culture, high-speed video microscopy showed beating cilia on the surface of the dermis, and the epithelial layer stained positively for the ciliated cell marker acetylated α-tubulin, the secretory cell marker MUC5AC, and the epithelial cell marker pan-cytokeratin on top-down whole-mount confocal microscopy. Staining with haematoxylin and eosin (H&E) demonstrated a pseudostratified mucociliary layer along the length of the dermis. 24 h after transplantation, a pseudostratified, ciliated layer could be observed on H&E staining of sections of trachea. At 5 days, the respiratory epithelial layer consisted of a single layer of cytokeratin 5-positive epithelial cells. Interpretation This study is the first, to our knowledge, to report the delivery of a transplantable tissue-engineered respiratory epithelial graft with mucociliary function. 24 h after transplantation the mucociliary layer was preserved although only a basal layer was demonstrated by 5 days, possibly due to the loss of the air–liquid interface within the muscle wrap. Funding Medical Research Council.
373. Lung cancer screening: where do we stand?
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Georgia Hardavella, Armin Frille, Katherina Bernadette Sreter, Florence Atrafi, Uraujh Yousaf-Khan, Ferhat Beyaz, Fotis Kyriakou, Elena Bellou, Monica L. Mullin, and Sam M. Janes
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Diseases of the respiratory system ,RC705-779 - Abstract
Lung cancer screening (LCS) programmes have emerged over recent years around the world. LCS programmes present differences in delivery, inclusion criteria and resource allocation. On a national scale, only a few LCS programmes have been fully established, but more are anticipated to follow. Evidence has shown that, in combination with a low-dose chest computed tomography scan, smoking cessation should be offered as part of a LCS programme for improved patient outcomes. Promising tools in LCS include further refined risk prediction models, the use of biomarkers, artificial intelligence and radiomics. However, these tools require further study and clinical validation is required prior to routine implementation.
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- 2024
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374. 11β hydroxysteroid dehydrogenase type 1 transgenic mesenchymal stem cells attenuate inflammation in models of sepsis
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Rahul Y. Mahida, Zhengqiang Yuan, Krishna K. Kolluri, Aaron Scott, Dhruv Parekh, Rowan S. Hardy, Michael A. Matthay, Gavin D. Perkins, Sam M. Janes, and David R. Thickett
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mesenchymal stem cell ,HSD-1 ,transfection ,sepsis ,macrophage ,Biotechnology ,TP248.13-248.65 - Abstract
BackgroundHuman bone marrow mesenchymal stem cell (MSC) administration reduces inflammation in pre-clinical models of sepsis and sepsis-related lung injury, however clinical efficacy in patients has not yet been demonstrated. We previously showed that Alveolar Macrophage (AM) 11β-hydroxysteroid dehydrogenase type-1 (HSD-1) autocrine signalling is impaired in critically ill sepsis patients, which promotes inflammatory injury. Administration of transgenic MSCs (tMSCs) which overexpress HSD-1 may enhance the anti-inflammatory effects of local glucocorticoids and be more effective at reducing inflammation in sepsis than cellular therapy alone.MethodsMSCs were transfected using a recombinant lentiviral vector containing the HSD-1 and GPF transgenes under the control of a tetracycline promoter. Thin layer chromatography assessed HSD-1 reductase activity in tMSCs. Mesenchymal stem cell phenotype was assessed by flow cytometry and bi-lineage differentiation. HSD-1 tMSCs were co-cultured with LPS-stimulated monocyte-derived macrophages (MDMs) from healthy volunteers prior to assessment of pro-inflammatory cytokine release. HSD-1 tMSCs were administered intravenously to mice undergoing caecal ligation and puncture (CLP).ResultsMSCs were transfected with an efficiency of 91.1%, and maintained an MSC phenotype. Functional HSD-1 activity was demonstrated in tMSCs, with predominant reductase cortisol activation (peak 8.23 pM/hour/100,000 cells). HSD-1 tMSC co-culture with LPS-stimulated MDMs suppressed TNFα and IL-6 release. Administration of transgene activated HSD-1 tMSCs in a murine model of CLP attenuated neutrophilic inflammation more effectively than transgene inactive tMSCs (medians 0.403 v 1.36 × 106/ml, p = 0.033).ConclusionThe synergistic impact of HSD-1 transgene expression and MSC therapy attenuated neutrophilic inflammation in a mouse model of peritoneal sepsis more effectively than MSC therapy alone. Future studies investigating the anti-inflammatory capacity of HSD-1 tMSCs in models of sepsis-related direct lung injury and inflammatory diseases are required.
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- 2024
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375. Overall and non‐lung cancer incidence and mortality in the National Lung Screening Trial: Opportunities for multi‐cancer early detection
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Alpa V. Patel, Ellen T. Chang, Allan Hackshaw, Sam M. Janes, Diana S. M. Buist, Earl Hubbell, Christina A. Clarke, and Graham A. Colditz
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cancer risk ,cancer screening ,early detection of cancer ,multi‐cancer early detection ,National Lung Screening Trial ,population health ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Currently recommended cancer screening programs address only part of the overall population cancer burden. Even populations deemed high‐risk for certain individual cancers experience a considerable potential burden of other cancers. However, few published cancer screening trials report the incidence of untargeted cancers. Methods The National Lung Screening Trial (NLST), initiated in 2002–2004, was a randomized controlled trial of lung cancer screening in adults with ≥30 pack‐years of smoking. Active follow‐up for incident invasive cancers continued through 2009. Results Among 53,229 NLST subjects (median follow‐up 6.5 years after randomization), the incidence of lung cancer was 615 per 100,000 person‐years (32% of 6142 overall first primary incident invasive cancers), and that of non‐lung cancer was 1327 per 100,000 (68%). Non‐lung cancer incidence exceeded that for lung cancer in all 5‐year age categories and all quintiles of smoking pack‐years. Besides lung cancer, the most common cancers were prostate, breast, colon/rectum, bladder, and head/neck; 23% were smoking‐related cancers, and 54% were cancer types lacking recommended population‐based screening modalities (32% excluding prostate). Non‐lung cancer comprised 48% of 1793 cancer deaths. Conclusions In the NLST, only 32% of first primary cancer incidence after study entry was lung, compared with 68% non‐lung. Even in a population at high risk for lung cancer, a single‐cancer screening test misses most cancers. Thus, in combination with existing single‐cancer screening modalities, multi‐cancer screening tests—which address many of the incident non‐lung cancers in this trial—have potential to address a currently inaccessible portion of cancer morbidity and mortality.
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- 2024
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376. Are We Achieving the Current Waiting Time Targets in Lung Cancer Treatment?
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Stephen G. Spiro and Sam M. Janes
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Pulmonary and Respiratory Medicine ,Waiting time ,Medical Audit ,medicine.medical_specialty ,Government ,Pediatrics ,Lung Neoplasms ,Time Factors ,Waiting Lists ,Referral ,business.industry ,Specialty ,Cancer ,Disease ,Emergency department ,medicine.disease ,United Kingdom ,Oncology ,Family medicine ,medicine ,Humans ,Lung cancer ,business ,Referral and Consultation - Abstract
Most large hospitals in the United Kingdom will see 100 to 150 new cases of lung cancer a year, mostly as new outpatient referals, but as much as 30% of patients are admitted through the emergency department to be cared for by a variety of disciplines. So, it is a significant load, for a disease for which the median survival is 8 to 9 months,it needs prompt and expert attention. Before the National Cancer Plan in 1997, there was no system of prioritization for suspected cancer referrals, and for those patients admitted, much depended on the specialty in charge as to what might happen and at what pace (let alone whether a respiratory refferal was made!). The British government has made cancer care a priority, basically because British 5-year survival figures were considered inferior to those of other comparable European and western countries for several cancer types and because there was inadequate order in the organization of day-to-day cancer care.As discussed in the commentary by Devbhandari et al. in this issue oft The Journal, the expectation is for patients suspected to have lung cancer to be seen within 14 days of a refferal, diagonsed and staged with a decision for intial treatment within 62 days of initial referral. In addition to forming regional cancer centre, each with several units (district general hospitals), the development of weekly multidisciplinary team(MDT) meetings and provision of clinical coordinators to run these meetings, follow patients and speed up,tests the setting has been laid for improvement.
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377. EBUS-TBNA for the Mediastinal Staging of Non-small Cell Lung Cancer
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Neal Navani, Stephen G. Spiro, and Sam M. Janes
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Pulmonary and Respiratory Medicine ,Oncology ,Ebus tbna ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Biopsy fine needle ,medicine.disease ,Mediastinal Neoplasm ,Mediastinal staging ,Positron emission tomography ,Internal medicine ,medicine ,Neoplasm staging ,Radiology ,Non small cell ,Lung cancer ,business - Full Text
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378. Assessing eligibility for lung cancer screening using parsimonious ensemble machine learning models: A development and validation study
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Thomas Callender, Fergus Imrie, Bogdan Cebere, Nora Pashayan, Neal Navani, Mihaela van der Schaar, and Sam M. Janes
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Medicine - Published
- 2023
379. Phenotyping of lymphoproliferative tumours generated in xenografts of non-small cell lung cancer
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David R. Pearce, Ayse U. Akarca, Roel P. H. De Maeyer, Emily Kostina, Ariana Huebner, Monica Sivakumar, Takahiro Karasaki, Kavina Shah, Sam M. Janes, Nicholas McGranahan, Venkat Reddy, Arne N. Akbar, David A. Moore, Teresa Marafioti, Charles Swanton, and Robert E. Hynds
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patient-derived xenograft models ,PDX ,pre-clinical modeling ,non-small cell lung cancer ,lymphoproliferation ,Epstein-Barr virus ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
BackgroundPatient-derived xenograft (PDX) models involve the engraftment of tumour tissue in immunocompromised mice and represent an important pre-clinical oncology research method. A limitation of non-small cell lung cancer (NSCLC) PDX model derivation in NOD-scid IL2Rgammanull (NSG) mice is that a subset of initial engraftments are of lymphocytic, rather than tumour origin. MethodsThe immunophenotype of lymphoproliferations arising in the lung TRACERx PDX pipeline were characterised. To present the histology data herein, we developed a Python-based tool for generating patient-level pathology overview figures from whole-slide image files; PATHOverview is available on GitHub (https://github.com/EpiCENTR-Lab/PATHOverview).ResultsLymphoproliferations occurred in 17.8% of lung adenocarcinoma and 10% of lung squamous cell carcinoma transplantations, despite none of these patients having a prior or subsequent clinical history of lymphoproliferative disease. Lymphoproliferations were predominantly human CD20+ B cells and had the immunophenotype expected for post-transplantation diffuse large B cell lymphoma with plasma cell features. All lymphoproliferations expressed Epstein-Barr-encoded RNAs (EBER). Analysis of immunoglobulin light chain gene rearrangements in three tumours where multiple tumour regions had resulted in lymphoproliferations suggested that each had independent clonal origins. DiscussionOverall, these data suggest that B cell clones with lymphoproliferative potential are present within primary NSCLC tumours, and that these are under continuous immune surveillance. Since these cells can be expanded following transplantation into NSG mice, our data highlight the value of quality control measures to identify lymphoproliferations within xenograft pipelines and support the incorporation of strategies to minimise lymphoproliferations during the early stages of xenograft establishment pipelines.
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- 2023
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380. Delineating associations of progressive pleuroparenchymal fibroelastosis in patients with pulmonary fibrosis
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Eyjolfur Gudmundsson, An Zhao, Nesrin Mogulkoc, Frouke van Beek, Tinne Goos, Christopher J. Brereton, Marcel Veltkamp, Robert Chapman, Hendrik W. van Es, Helen Garthwaite, Bahareh Gholipour, Melissa Heightman, Arjun Nair, Katarina Pontoppidan, Recep Savas, Asia Ahmed, Marie Vermant, Omer Unat, Alex Procter, Laurens De Sadeleer, Emma Denneny, Timothy Wallis, Mark Duncan, Magali Taylor, Stijn Verleden, Sam M. Janes, Daniel C. Alexander, Athol U. Wells, Joanna Porter, Mark G. Jones, Iain Stewart, Coline H.M. van Moorsel, Wim Wuyts, and Joseph Jacob
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Medicine - Abstract
Background Computer quantification of baseline computed tomography (CT) radiological pleuroparenchymal fibroelastosis (PPFE) associates with mortality in idiopathic pulmonary fibrosis (IPF). We examined mortality associations of longitudinal change in computer-quantified PPFE-like lesions in IPF and fibrotic hypersensitivity pneumonitis (FHP). Methods Two CT scans 6–36 months apart were retrospectively examined in one IPF (n=414) and one FHP population (n=98). Annualised change in computerised upper-zone pleural surface area comprising radiological PPFE-like lesions (Δ-PPFE) was calculated. Δ-PPFE >1.25% defined progressive PPFE above scan noise. Mixed-effects models evaluated Δ-PPFE against change in visual CT interstitial lung disease (ILD) extent and annualised forced vital capacity (FVC) decline. Multivariable models were adjusted for age, sex, smoking history, baseline emphysema presence, antifibrotic use and diffusion capacity of the lung for carbon monoxide. Mortality analyses further adjusted for baseline presence of clinically important PPFE-like lesions and ILD change. Results Δ-PPFE associated weakly with ILD and FVC change. 22–26% of IPF and FHP cohorts demonstrated progressive PPFE-like lesions which independently associated with mortality in the IPF cohort (hazard ratio 1.25, 95% CI 1.16–1.34, p
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- 2023
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381. The promises and challenges of early non‐small cell lung cancer detection: patient perceptions, low‐dose CT screening, bronchoscopy and biomarkers
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Lukas Kalinke, Ricky Thakrar, and Sam M. Janes
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biomarkers ,cancer ,detection ,screening ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Lung cancer survival statistics are sobering with survival ranking among the poorest of all cancers despite the addition of targeted therapies and immunotherapies. However, improvements in tools for early detection hold promise. The Nederlands–Leuvens Longkanker Screenings Onderzoek (NELSON) trial recently corroborated the findings from the previous National Lung Screening Trial low‐dose Computerised Tomography (NLST) screening trial in reducing lung cancer mortality. Biomarker research and development is increasing at pace as the molecular life histories of lung cancers become further unravelled. Low‐dose CT screening (LDCT) is effective but targets only those at the highest risk and is burdensome on healthcare. An optimally designed CT screening programme at best will only detect a low proportion of overall lung cancers as only those at very high‐risk meet screening criteria. Biomarkers that help risk stratify suitable patients for LDCT screening, and those that assist in determining which LDCT detected nodules are likely to represent malignant disease are needed. Some biomarkers have been proposed as standalone lung cancer diagnosis tools. Bronchoscopy technology is improving, with better capacity to identify and obtain samples from early lung cancers. Clinicians need to be aware of each early lung cancer detection method’s inherent limitations. We anticipate that the future of early lung cancer diagnosis will involve a synergistic, multimodal approach, combining several early detection methods.
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- 2021
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382. Cell-intrinsic differences between human airway epithelial cells from children and adults
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Elizabeth F. Maughan, Robert E. Hynds, Adam Pennycuick, Ersilia Nigro, Kate H.C. Gowers, Celine Denais, Sandra Gómez-López, Kyren A. Lazarus, Jessica C. Orr, David R. Pearce, Sarah E. Clarke, Dani Do Hyang Lee, Maximillian N.J. Woodall, Tereza Masonou, Katie-Marie Case, Vitor H. Teixeira, Benjamin E. Hartley, Richard J. Hewitt, Chadwan Al Yaghchi, Gurpreet S. Sandhu, Martin A. Birchall, Christopher O’Callaghan, Claire M. Smith, Paolo De Coppi, Colin R. Butler, and Sam M. Janes
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Medical science ,Pediatrics ,Molecular biology ,Science - Abstract
Summary: The airway epithelium is a protective barrier that is maintained by the self-renewal and differentiation of basal stem cells. Increasing age is a principle risk factor for chronic lung diseases, but few studies have explored age-related molecular or functional changes in the airway epithelium. We retrieved epithelial biopsies from histologically normal tracheobronchial sites from pediatric and adult donors and compared their cellular composition and gene expression profile (in laser capture-microdissected whole epithelium, fluorescence-activated cell-sorted basal cells, and basal cells in cell culture). Histologically, pediatric and adult tracheobronchial epithelium was similar in composition. We observed age-associated changes in RNA sequencing studies, including higher interferon-associated gene expression in pediatric epithelium. In cell culture, pediatric cells had higher colony formation ability, sustained in vitro growth, and outcompeted adult cells in a direct competitive proliferation assay. Our results demonstrate cell-intrinsic differences between airway epithelial cells from children and adults in both homeostatic and proliferative states.
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- 2022
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383. Mapping lung squamous cell carcinoma pathogenesis through in vitro and in vivo models
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Sandra Gómez-López, Zoe E. Whiteman, and Sam M. Janes
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Biology (General) ,QH301-705.5 - Abstract
Gómez-López and co-authors discuss advances in the development of in vitro and in vivo models for lung squamous cell carcinoma (LUSC) and their role in understanding the cellular and molecular processes driving LUSC development and responses to therapy.
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- 2021
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384. Lung delivery of MSCs expressing anti-cancer protein TRAIL visualised with 89Zr-oxine PET-CT
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P. Stephen Patrick, Krishna K. Kolluri, May Zaw Thin, Adam Edwards, Elizabeth K. Sage, Tom Sanderson, Benjamin D. Weil, John C. Dickson, Mark F. Lythgoe, Mark Lowdell, Sam M. Janes, and Tammy L. Kalber
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PET-CT ,Cell tracking ,TRAIL ,89Zr-oxine ,Cord-derived MSCs ,Cell therapy ,Medicine (General) ,R5-920 ,Biochemistry ,QD415-436 - Abstract
Abstract Background MSCTRAIL is a cell-based therapy consisting of human allogeneic umbilical cord-derived MSCs genetically modified to express the anti-cancer protein TRAIL. Though cell-based therapies are typically designed with a target tissue in mind, delivery is rarely assessed due to a lack of translatable non-invasive imaging approaches. In this preclinical study, we demonstrate 89Zr-oxine labelling and PET-CT imaging as a potential clinical solution for non-invasively tracking MSCTRAIL biodistribution. Future implementation of this technique should improve our understanding of MSCTRAIL during its evaluation as a therapy for metastatic lung adenocarcinoma. Methods MSCTRAIL were radiolabelled with 89Zr-oxine and assayed for viability, phenotype, and therapeutic efficacy post-labelling. PET-CT imaging of 89Zr-oxine-labelled MSCTRAIL was performed in a mouse model of lung cancer following intravenous injection, and biodistribution was confirmed ex vivo. Results MSCTRAIL retained the therapeutic efficacy and MSC phenotype in vitro at labelling amounts up to and above those required for clinical imaging. The effect of 89Zr-oxine labelling on cell proliferation rate was amount- and time-dependent. PET-CT imaging showed delivery of MSCTRAIL to the lungs in a mouse model of lung cancer up to 1 week post-injection, validated by in vivo bioluminescence imaging, autoradiography, and fluorescence imaging on tissue sections. Conclusions 89Zr-oxine labelling and PET-CT imaging present a potential method of evaluating the biodistribution of new cell therapies in patients, including MSCTRAIL. This offers to improve understanding of cell therapies, including mechanism of action, migration dynamics, and inter-patient variability.
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- 2020
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385. Pleuroparenchymal fibroelastosis in idiopathic pulmonary fibrosis: Survival analysis using visual and computer-based computed tomography assessment
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Eyjolfur Gudmundsson, An Zhao, Nesrin Mogulkoc, Iain Stewart, Mark G. Jones, Coline H.M. Van Moorsel, Recep Savas, Christopher J. Brereton, Hendrik W. Van Es, Omer Unat, Katarina Pontoppidan, Frouke Van Beek, Marcel Veltkamp, Bahareh Gholipour, Arjun Nair, Athol U. Wells, Sam M. Janes, Daniel C. Alexander, and Joseph Jacob
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Pleuroparenchymal fibroelastosis ,PPFE, Idiopathic pulmonary fibrosis ,IPF ,Computed tomography ,Quantitative analysis ,Medicine (General) ,R5-920 - Abstract
Background: Idiopathic pulmonary fibrosis (IPF) and pleuroparenchymal fibroelastosis (PPFE) are known to have poor outcomes but detailed examinations of prognostic significance of an association between these morphologic processes are lacking. Methods: Retrospective observational study of independent derivation and validation cohorts of IPF populations. Upper-lobe PPFE extent was scored visually (vPPFE) as categories of absent, moderate, marked. Computerised upper-zone PPFE extent (cPPFE) was examined continuously and using a threshold of 2·5% pleural surface area. vPPFE and cPPFE were evaluated against 1-year FVC decline (estimated using mixed-effects models) and mortality. Multivariable models were adjusted for age, gender, smoking history, antifibrotic treatment and diffusion capacity for carbon monoxide. Findings: PPFE prevalence was 49% (derivation cohort, n = 142) and 72% (validation cohort, n = 145). vPPFE marginally contributed 3–14% to variance in interstitial lung disease (ILD) severity across both cohorts.In multivariable models, marked vPPFE was independently associated with 1-year FVC decline (derivation: regression coefficient 18·3, 95 CI 8·47–28·2%; validation: 7·51, 1·85–13·2%) and mortality (derivation: hazard ratio [HR] 7·70, 95% CI 3·50–16·9; validation: HR 3·01, 1·33–6·81). Similarly, continuous and dichotomised cPPFE were associated with 1-year FVC decline and mortality (cPPFE ≥ 2·5% derivation: HR 5·26, 3·00–9·22; validation: HR 2·06, 1·28–3·31). Individuals with cPPFE ≥ 2·5% or marked vPPFE had the lowest median survival, the cPPFE threshold demonstrated greater discrimination of poor outcomes at two and three years than marked vPPFE. Interpretation: PPFE quantification supports distinction of IPF patients with a worse outcome independent of established ILD severity measures. This has the potential to improve prognostic management and elucidate separate pathways of disease progression. Funding: This research was funded in whole or in part by the Wellcome Trust [209,553/Z/17/Z] and the NIHR UCLH Biomedical Research Centre, UK.
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- 2021
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386. Monitoring neovascularization and integration of decellularized human scaffolds using photoacoustic imaging
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Olumide Ogunlade, Jasmine O.Y. Ho, Tammy L. Kalber, Robert E. Hynds, Edward Zhang, Sam M. Janes, Martin A. Birchall, Colin R. Butler, and Paul Beard
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Physics ,QC1-999 ,Acoustics. Sound ,QC221-246 ,Optics. Light ,QC350-467 - Abstract
Tissue engineering is a branch of regenerative medicine that aims to manipulate cells and scaffolds to create bioartificial tissues and organs for patients. A major challenge lies in monitoring the blood supply to the new tissue following transplantation: the integration and neovascularization of scaffolds in vivo is critical to their functionality. Photoacoustic imaging (PAI) is a laser-generated ultrasound-based technique that is particularly well suited to visualising microvasculature due to the high optical absorption of haemoglobin. Here, we describe an early proof-of-concept study in which PAI in widefield tomography mode is used to image biological, decellularized human tracheal scaffolds. We found that PAI allowed the longitudinal tracking of scaffold integration into subcutaneous murine tissue with high spatial resolution at depth over an extended period of time. The results of the study were consistent with post-imaging histological analyses, demonstrating that PAI can be used to non-invasively monitor the extent of vascularization in biological tissue-engineered scaffolds. We propose that this technique may be a valuable tool for studies designed to test interventions aimed at improving the speed and extent of scaffold neovascularization in tissue engineering. With technological refinement, it could also permit in vivo monitoring of revascularization in patients, for example to determine timing of heterotopic graft transfer. Keywords: Angiogenesis, Tissue engineering, Trachea, Transplantation, Vascularization, Photoacoustic imaging
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- 2019
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387. Streamlining staging of lung and colorectal cancer with whole body MRI; study protocols for two multicentre, non-randomised, single-arm, prospective diagnostic accuracy studies (Streamline C and Streamline L)
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Stuart A. Taylor, Sue Mallett, Anne Miles, Sandy Beare, Gauraang Bhatnagar, John Bridgewater, Rob Glynne-Jones, Vicky Goh, Ashley M. Groves, Sam M. Janes, Dow Mu Koh, Steve Morris, Alison Morton, Neal Navani, Alf Oliver, Anwar R. Padhani, Shonit Punwani, Andrea G. Rockall, and Steve Halligan
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Colorectal cancer ,Lung cancer ,Staging ,Computed tomography ,Whole body magnetic resonance imaging ,Positron emission tomography ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background and aims Rapid and accurate cancer staging following diagnosis underpins patient management, in particular the identification of distant metastatic disease. Current staging guidelines recommend sequential deployment of various imaging platforms such as computerised tomography (CT) and positron emission tomography (PET) which can be time and resource intensive and onerous for patients. Recent studies demonstrate that whole body magnetic resonance Imaging (WB-MRI) may stage cancer efficiently in a single visit, with potentially greater accuracy than current staging investigations. The Streamline trials aim to evaluate whether WB-MRI increases per patient detection of metastases in non-small cell lung and colorectal cancer compared to standard staging pathways. Methods The Streamline trials are multicentre, non-randomised, single-arm, prospective diagnostic accuracy studies with a novel design to capture patient management decisions during staging pathways. The two trials recruit adult patients with proven or highly suspected new diagnosis of primary colorectal (Streamline C) or non-small cell lung cancer (Streamline L) referred for staging. Patients undergo WB-MRI in addition to standard staging investigations. Strict blinding protocols are enforced for those interpreting the imaging. A first major treatment decision is made by the multi-disciplinary team prior to WB-MRI revelation based on standard staging investigations only, then based on the WB-MRI and any additional tests precipitated by WB-MRI, and finally based on all available test results. The reference standard is derived by a multidisciplinary consensus panel who assess 12 months of follow-up data to adjudicate on the TNM stage at diagnosis. Health psychology assessment of patients’ experiences of the cancer staging pathway will be undertaken via interviews and questionnaires. A cost (effectiveness) analysis of WB-MRI compared to standard staging pathways will be performed. Discussion We describe a novel approach to radiologist and clinician blinding to ascertain the ‘true’ diagnostic accuracy of differing imaging pathways and discuss our approach to assessing the impact of WB-MRI on clinical decision making in real-time. The Streamline trials will compare WB-MRI and standard imaging pathways in the same patients, thereby informing the most accurate and efficient approach to staging. Trial registration Streamline C ISRCTN43958015 (registered 25/7/2012). Streamline L ISRCTN50436483 (registered 31/7/2012).
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- 2017
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388. The secret lives of cancer cell lines
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Robert E. Hynds, Elina Vladimirou, and Sam. M. Janes
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Cancer ,Cell line ,Tissue culture ,Tumor cell line ,Genetic heterogeneity ,Medicine ,Pathology ,RB1-214 - Abstract
The extent of genetic and epigenetic diversity between and within patient tumors is being mapped in ever more detail. It is clear that cancer is an evolutionary process in which tumor cell intrinsic and extrinsic forces shape clonal selection. The pre-clinical oncology pipeline uses model systems of human cancer – including mouse models, cell lines, patient-derived organoids and patient-derived xenografts – to study tumor biology and assess the efficacy of putative therapeutic agents. Model systems cannot completely replicate the environment of human tumors and, even within the same cancer model, data are often irreproducible between laboratories. One hypothesis is that ongoing evolutionary processes remain relevant in laboratory models, leading to divergence over time. In a recent edition of Nature, Ben-David and colleagues showed that different stocks of widely used cancer cell lines – a staple of cancer research over many decades – are highly heterogeneous in terms of their genetics, transcriptomics and responses to therapies. The authors find compelling evidence of positive selection based on ongoing mutational processes and chromosomal instability. Thus, the origin, culture conditions and cumulative number of population doublings of cell lines likely influence experimental outcomes. Here, we summarize the key findings of this important study and discuss the practical implications of this work for researchers using cell lines in the laboratory.
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- 2018
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389. TRAIL delivery by MSC-derived extracellular vesicles is an effective anticancer therapy
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ZhengQiang Yuan, Krishna K. Kolluri, Kate H. C. Gowers, and Sam M. Janes
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EV ,cancer ,MSC ,TRAIL ,Cytology ,QH573-671 - Abstract
Extracellular vesicles (EVs) are lipid membrane-enclosed nanoparticles released by cells. They mediate intercellular communication by transferring biological molecules and therefore have potential as innovative drug delivery vehicles. TNF-related apoptosis-inducing ligand (TRAIL) selectively induces apoptosis of cancer cells. Unfortunately, the clinical application of recombinant rTRAIL has been hampered by its low bioavailability and resistance of cancer cells. EV-mediated TRAIL delivery may circumvent these problems. Mesenchymal stromal cells (MSCs) produce EVs and could be a good source for therapeutic EV production. We investigated if TRAIL could be expressed in MSC-derived EVs and examined their cancer cell-killing efficacy. EVs were isolated by ultracentrifugation and were membranous particles of 50–70 nm in diameter. Both MSC- and TRAIL-expressing MSC (MSCT)-derived EVs express CD63, CD9 and CD81, but only MSCT-EVs express surface TRAIL. MSCT-EVs induced apoptosis in 11 cancer cell lines in a dose-dependent manner but showed no cytotoxicity in primary human bronchial epithelial cells. Caspase activity inhibition or TRAIL neutralisation blocked the cytotoxicity of TRAIL-positive EVs. MSCT-EVs induced pronounced apoptosis in TRAIL-resistant cancer cells and this effect could be further enhanced using a CDK9 inhibitor. These data indicate that TRAIL delivery by MSC-derived EVs is an effective anticancer therapy.
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- 2017
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390. Epithelial cell migration as a potential therapeutic target in early lung cancer
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Fraser R. Millar, Sam M. Janes, and Adam Giangreco
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Diseases of the respiratory system ,RC705-779 - Abstract
Lung cancer is the most lethal cancer type worldwide, with the majority of patients presenting with advanced stage disease. Targeting early stage disease pathogenesis would allow dramatic improvements in lung cancer patient survival. Recently, cell migration has been shown to be an integral process in early lung cancer ontogeny, with preinvasive lung cancer cells shown to migrate across normal epithelium prior to developing into invasive disease. TP53 mutations are the most abundant mutations in human nonsmall cell lung cancers and have been shown to increase cell migration via regulation of Rho-GTPase protein activity. In this review, we explore the possibility of targeting TP53-mediated Rho-GTPase activity in early lung cancer and the opportunities for translating this preclinical research into effective therapies for early stage lung cancer patients.
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- 2017
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391. Correction: Rac1 Deletion Causes Thymic Atrophy.
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Lukas Hunziker, Salvador Aznar Benitah, Kristin M. Braun, Kim Jensen, Katrina McNulty, Colin Butler, Elspeth Potton, Emma Nye, Richard Boyd, Geoff Laurent, Michael Glogauer, Nick A. Wright, Fiona M. Watt, and Sam M. Janes
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Medicine ,Science - Published
- 2011
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392. Bioengineered airway epithelial grafts with mucociliary function based on collagen IV- and laminin-containing extracellular matrix scaffolds.
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Hamilton NJI, Lee DDH, Gowers KHC, Butler CR, Maughan EF, Jevans B, Orr JC, McCann CJ, Burns AJ, MacNeil S, Birchall MA, O'Callaghan C, Hynds RE, and Janes SM
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- Animals, Bronchi, Cells, Cultured, Epithelial Cells, Humans, Rabbits, Collagen, Extracellular Matrix, Laminin, Respiratory Mucosa, Tissue Scaffolds
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Current methods to replace damaged upper airway epithelium with exogenous cells are limited. Existing strategies use grafts that lack mucociliary function, leading to infection and the retention of secretions and keratin debris. Strategies that regenerate airway epithelium with mucociliary function are clearly desirable and would enable new treatments for complex airway disease.Here, we investigated the influence of the extracellular matrix (ECM) on airway epithelial cell adherence, proliferation and mucociliary function in the context of bioengineered mucosal grafts. In vitro , primary human bronchial epithelial cells (HBECs) adhered most readily to collagen IV. Biological, biomimetic and synthetic scaffolds were compared in terms of their ECM protein content and airway epithelial cell adherence.Collagen IV and laminin were preserved on the surface of decellularised dermis and epithelial cell attachment to decellularised dermis was greater than to the biomimetic or synthetic alternatives tested. Blocking epithelial integrin α2 led to decreased adherence to collagen IV and to decellularised dermis scaffolds. At air-liquid interface (ALI), bronchial epithelial cells cultured on decellularised dermis scaffolds formed a differentiated respiratory epithelium with mucociliary function. Using in vivo chick chorioallantoic membrane (CAM), rabbit airway and immunocompromised mouse models, we showed short-term preservation of the cell layer following transplantation.Our results demonstrate the feasibility of generating HBEC grafts on clinically applicable decellularised dermis scaffolds and identify matrix proteins and integrins important for this process. The long-term survivability of pre-differentiated epithelia and the relative merits of this approach against transplanting basal cells should be assessed further in pre-clinical airway transplantation models., Competing Interests: Conflict of interest: N.J.I. Hamilton has nothing to disclose. Conflict of interest: D.D.H. Lee has nothing to disclose. Conflict of interest: K.H.C. Gowers has nothing to disclose. Conflict of interest: C.R. Butler has nothing to disclose. Conflict of interest: E.F. Maughan has nothing to disclose. Conflict of interest: B. Jevans has nothing to disclose. Conflict of interest: J.C. Orr has nothing to disclose. Conflict of interest: C.J. McCann has nothing to disclose. Conflict of interest: A.J. Burns has nothing to disclose. Conflict of interest: S. MacNeil has nothing to disclose. Conflict of interest: M.A. Birchall has nothing to disclose. Conflict of interest: C. O'Callaghan has nothing to disclose. Conflict of interest: R.E. Hynds has nothing to disclose. Conflict of interest: S.M. Janes has nothing to disclose., (Copyright ©ERS 2020.)
- Published
- 2020
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