351. Sequence characterization, in silico mapping and cytosine methylation analysis of markers linked to apospory in Paspalum notatum
- Author
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Silvina Andrea Felitti, Lorena Adelina Siena, Juliana Stein, Erci Javier Martínez, Silvina Claudia Pessino, María Pía Rodríguez, Juan Pablo A. Ortiz, Camilo Luis Quarin, and Maricel Podio
- Subjects
Genetics ,lcsh:QH426-470 ,molecular markers ,In silico ,Locus (genetics) ,gene mapping ,Biology ,Plant Genetics ,lcsh:Genetics ,Gene mapping ,Genetic linkage ,chromosome walking ,Primer walking ,apomixis ,Amplified fragment length polymorphism ,Restriction fragment length polymorphism ,Molecular Biology ,Research Article ,Synteny - Abstract
Fil: Podio, Maricel. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina. Fil: Podio, Maricel. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil. Rodríguez, María Pía. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil: Felitti, Silvina Andrea. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil: Stein, Juliana. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil: Martínez, Eric J. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina. Fil: Siena, Lorena Adelina. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil: Quarin, Camilo Luis. Universidad Nacional del Nordeste. Facultad de Ciencias Agrarias; Argentina. Fil: Pessino, Silvina Claudia. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. Fil: Ortíz, Juan Pablo Amelio. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias, Argentina. In previous studies we reported the identification of several AFLP, RAPD and RFLP molecular markers linked to apospory in Paspalum notatum. The objective of this work was to sequence these markers, obtain their flanking regions by chromosome walking and perform an in silico mapping analysis in rice and maize. The methylation status of two apospory-related sequences was also assessed using methylation-sensitive RFLP experiments. Fourteen molecular markers were analyzed and several protein-coding sequences were identified. Copy number estimates and RFLP linkage analysis showed that the sequence PnMAI3 displayed 2-4 copies per genome and linkage to apospory. Extension of this marker by chromosome walking revealed an additional protein-coding sequence mapping in silico in the apospory-syntenic regions of rice and maize. Approximately 5 kb corresponding to different markers were characterized through the global sequencing procedure. A more refined analysis based on sequence information indicated synteny with segments of chromosomes 2 and 12 of rice and chromosomes 3 and 5 of maize. Two loci associated with apomixis locus were tested in methylation-sensitive RFLP experiments using genomic DNA extracted from leaves. Although both target sequences were methylated no methylation polymorphisms associated with the mode of reproduction were detected.
- Published
- 2012