813 results on '"Bathen, Tone"'
Search Results
352. Additional file 2: of Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome
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Aure, Miriam, Vitelli, Valeria, Jernström, Sandra, Surendra Kumar, Krohn, Marit, Eldri Due, Haukaas, Tonje, Suvi-Katri Leivonen, Vollan, Hans, Lüders, Torben, Rødland, Einar, Vaske, Charles, Zhao, Wei, Møller, Elen, Nord, Silje, Giskeødegård, Guro, Bathen, Tone, Caldas, Carlos, Tramm, Trine, Alsner, Jan, Overgaard, Jens, Geisler, Jürgen, Bukholm, Ida, Naume, Bjørn, Schlichting, Ellen, Sauer, Torill, Mills, Gordon, Kåresen, Rolf, Mælandsmo, Gunhild, Lingjærde, Ole, Frigessi, Arnoldo, Kristensen, Vessela, Anne-Lise Børresen-Dale, and Sahlberg, Kristine
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body regions ,nervous system ,fungi ,skin and connective tissue diseases ,3. Good health - Abstract
a Supplementary methods. b Summary of clinicopathological properties of the 425 primary breast tumors in the Oslo2 cohort. (PDF 137 kb)
353. Additional file 10: of Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome
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Aure, Miriam, Vitelli, Valeria, Jernström, Sandra, Surendra Kumar, Krohn, Marit, Eldri Due, Haukaas, Tonje, Suvi-Katri Leivonen, Vollan, Hans, Lüders, Torben, Rødland, Einar, Vaske, Charles, Zhao, Wei, Møller, Elen, Nord, Silje, Giskeødegård, Guro, Bathen, Tone, Caldas, Carlos, Tramm, Trine, Alsner, Jan, Overgaard, Jens, Geisler, Jürgen, Bukholm, Ida, Naume, Bjørn, Schlichting, Ellen, Sauer, Torill, Mills, Gordon, Kåresen, Rolf, Mælandsmo, Gunhild, Lingjærde, Ole, Frigessi, Arnoldo, Kristensen, Vessela, Anne-Lise Børresen-Dale, and Sahlberg, Kristine
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3. Good health - Abstract
Six proteins differentially expressed between luminal A samples in COCA cluster 1 versus COCA cluster 4. (PDF 771 kb)
354. Integrative clustering reveals a novel split in the luminal A subtype of breast cancer with impact on outcome
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Aure, Miriam Ragle, Vitelli, Valeria, Jernström, Sandra, Kumar, Surendra, Krohn, Marit, Due, Eldri U, Haukaas, Tonje Husby, Leivonen, Suvi-Katri, Vollan, Hans Kristian Moen, Lüders, Torben, Rødland, Einar, Vaske, Charles J, Zhao, Wei, Møller, Elen K, Nord, Silje, Giskeødegård, Guro F, Bathen, Tone Frost, Caldas, Carlos, Tramm, Trine, Alsner, Jan, Overgaard, Jens, Geisler, Jürgen, Bukholm, Ida RK, Naume, Bjørn, Schlichting, Ellen, Sauer, Torill, Mills, Gordon B, Kåresen, Rolf, Mælandsmo, Gunhild M, Lingjærde, Ole Christian, Frigessi, Arnoldo, Kristensen, Vessela N, Børresen-Dale, Anne-Lise, Sahlberg, Kristine K, and OSBREAC
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DNA Copy Number Variations ,Norway ,Gene Expression Profiling ,Integration ,MicroRNA ,Breast Neoplasms ,Prognosis ,3. Good health ,Gene Expression Regulation, Neoplastic ,Luminal A ,MicroRNAs ,Breast cancer ,Biomarkers, Tumor ,Cluster Analysis ,Humans ,Metabolomics ,Consensus clustering ,Female ,Gene Regulatory Networks ,RNA, Messenger ,Metabolic Networks and Pathways - Abstract
BACKGROUND: Breast cancer is a heterogeneous disease at the clinical and molecular level. In this study we integrate classifications extracted from five different molecular levels in order to identify integrated subtypes. METHODS: Tumor tissue from 425 patients with primary breast cancer from the Oslo2 study was cut and blended, and divided into fractions for DNA, RNA and protein isolation and metabolomics, allowing the acquisition of representative and comparable molecular data. Patients were stratified into groups based on their tumor characteristics from five different molecular levels, using various clustering methods. Finally, all previously identified and newly determined subgroups were combined in a multilevel classification using a "cluster-of-clusters" approach with consensus clustering. RESULTS: Based on DNA copy number data, tumors were categorized into three groups according to the complex arm aberration index. mRNA expression profiles divided tumors into five molecular subgroups according to PAM50 subtyping, and clustering based on microRNA expression revealed four subgroups. Reverse-phase protein array data divided tumors into five subgroups. Hierarchical clustering of tumor metabolic profiles revealed three clusters. Combining DNA copy number and mRNA expression classified tumors into seven clusters based on pathway activity levels, and tumors were classified into ten subtypes using integrative clustering. The final consensus clustering that incorporated all aforementioned subtypes revealed six major groups. Five corresponded well with the mRNA subtypes, while a sixth group resulted from a split of the luminal A subtype; these tumors belonged to distinct microRNA clusters. Gain-of-function studies using MCF-7 cells showed that microRNAs differentially expressed between the luminal A clusters were important for cancer cell survival. These microRNAs were used to validate the split in luminal A tumors in four independent breast cancer cohorts. In two cohorts the microRNAs divided tumors into subgroups with significantly different outcomes, and in another a trend was observed. CONCLUSIONS: The six integrated subtypes identified confirm the heterogeneity of breast cancer and show that finer subdivisions of subtypes are evident. Increasing knowledge of the heterogeneity of the luminal A subtype may add pivotal information to guide therapeutic choices, evidently bringing us closer to improved treatment for this largest subgroup of breast cancer.
355. Germline HOXB13 mutations p.G84E and p.R217C do not confer an increased breast cancer risk
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Liu, Jingjing, Prager - Van Der Smissen, Wendy J. C., Collée, J. Margriet, Bolla, Manjeet K., Wang, Qin, Michailidou, Kyriaki, Dennis, Joe, Ahearn, Thomas U., Aittomäki, Kristiina, Ambrosone, Christine B., Andrulis, Irene L., Anton-Culver, Hoda, Antonenkova, Natalia N., Arndt, Volker, Arnold, Norbert, Aronson, Kristan J., Augustinsson, Annelie, Auvinen, Päivi, Becher, Heiko, Beckmann, Matthias W., Behrens, Sabine, Bermisheva, Marina, Bernstein, Leslie, Bogdanova, Natalia V., Bogdanova-Markov, Nadja, Bojesen, Stig E., Brauch, Hiltrud, Brenner, Hermann, Briceno, Ignacio, Brucker, Sara Y., Brüning, Thomas, Burwinkel, Barbara, Cai, Qiuyin, Cai, Hui, Campa, Daniele, Canzian, Federico, Castelao, Jose E., Chang-Claude, Jenny, Chanock, Stephen J., Choi, Ji-Yeob, Christiaens, Melissa, Clarke, Christine L., Couch, Fergus J., Czene, Kamila, Daly, Mary B., Devilee, Peter, Dos-Santos-Silva, Isabel, Dwek, Miriam, Eccles, Diana M., Eliassen, A. Heather, Fasching, Peter A., Figueroa, Jonine, Flyger, Henrik, Fritschi, Lin, Gago-Dominguez, Manuela, Gapstur, Susan M., García-Closas, Montserrat, García-Sáenz, José A., Gaudet, Mia M., Giles, Graham G., Goldberg, Mark S., Goldgar, David E., Guénel, Pascal, Haiman, Christopher A., Håkansson, Niclas, Hall, Per, Harrington, Patricia A., Hart, Steven N., Hartman, Mikael, Hillemanns, Peter, Hopper, John L., Hou, Ming-Feng, Hunter, David J., Huo, Dezheng, Ito, Hidemi, Iwasaki, Motoki, Jakimovska, Milena, Jakubowska, Anna, John, Esther M., Kaaks, Rudolf, Kang, Daehee, Keeman, Renske, Khusnutdinova, Elza, Kim, Sung-Won, Kraft, Peter, Kristensen, Vessela N., Kurian, Allison W., Le Marchand, Loic, Li, Jingmei, Lindblom, Annika, Lophatananon, Artitaya, Luben, Robert N., Lubiński, Jan, Mannermaa, Arto, Manoochehri, Mehdi, Manoukian, Siranoush, Margolin, Sara, Mariapun, Shivaani, Matsuo, Keitaro, Maurer, Tabea, Mavroudis, Dimitrios, Meindl, Alfons, Menon, Usha, Milne, Roger L., Muir, Kenneth, Mulligan, Anna Marie, Neuhausen, Susan L., Nevanlinna, Heli, Offit, Kenneth, Olopade, Olufunmilayo I., Olson, Janet E., Olsson, Håkan, Orr, Nick, Park, Sue K., Peterlongo, Paolo, Peto, Julian, Plaseska-Karanfilska, Dijana, Presneau, Nadege, Rack, Brigitte, Rau-Murthy, Rohini, Rennert, Gad, Rennert, Hedy S., Rhenius, Valerie, Romero, Atocha, Ruebner, Matthias, Saloustros, Emmanouil, Schmutzler, Rita K., Schneeweiss, Andreas, Scott, Christopher, Shah, Mitul, Shen, Chen-Yang, Shu, Xiao-Ou, Simard, Jacques, Sohn, Christof, Southey, Melissa C., Spinelli, John J., Tamimi, Rulla M., Tapper, William J., Teo, Soo H., Terry, Mary Beth, Torres, Diana, Truong, Thérèse, Untch, Michael, Vachon, Celine M., Van Asperen, Christi J., Wolk, Alicja, Yamaji, Taiki, Zheng, Wei, Ziogas, Argyrios, Ziv, Elad, Torres-Mejía, Gabriela, Dörk, Thilo, Swerdlow, Anthony J., Hamann, Ute, Schmidt, Marjanka K., Dunning, Alison M., Pharoah, Paul D. P., Easton, Douglas F., Hooning, Maartje J., Martens, John W. M., Hollestelle, Antoinette, Sahlberg, Kristine K., Børresen-Dale, Anne-Lise, Ottestad, Lars, Kåresen, Rolf, Schlichting, Ellen, Holmen, Marit Muri, Sauer, Toril, Haakensen, Vilde, Engebråten, Olav, Naume, Bjørn, Fosså, Alexander, Kiserud, Cecile E., Reinertsen, Kristin V., Helland, Åslaug, Riis, Margit, Geisler, Jürgen, Alnæs, Grethe I. Grenaker, Bathen, Tone F., Borgen, Elin, Fritzman, Britt, Garred, Øystein, Geitvik, Gry Aarum, Hofvind, Solveig, Langerød, Anita, Lingjærde, Ole Christian, Mælandsmo, Gunhild Mari, Russnes, Hege G, Skjerven, Helle Kristine, Sørlie, Therese, Clarke, Christine, Marsh, Deborah, Scott, Rodney, Baxter, Robert, Yip, Desmond, Carpenter, Jane, Davis, Alison, Pathmanathan, Nirmala, Simpson, Peter, Graham, Dinny, and Sachchithananthan, Mythily
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631/67 ,631/208 ,article ,skin and connective tissue diseases ,692/499 ,3. Good health ,692/4028 - Abstract
In breast cancer, high levels of homeobox protein Hox-B13 (HOXB13) have been associated with disease progression of ER-positive breast cancer patients and resistance to tamoxifen treatment. Since HOXB13 p.G84E is a prostate cancer risk allele, we evaluated the association between HOXB13 germline mutations and breast cancer risk in a previous study consisting of 3,270 familial non-BRCA1/2 breast cancer cases and 2,327 controls from the Netherlands. Although both recurrent HOXB13 mutations p.G84E and p.R217C were not associated with breast cancer risk, the risk estimation for p.R217C was not very precise. To provide more conclusive evidence regarding the role of HOXB13 in breast cancer susceptibility, we here evaluated the association between HOXB13 mutations and increased breast cancer risk within 81 studies of the international Breast Cancer Association Consortium containing 68,521 invasive breast cancer patients and 54,865 controls. Both HOXB13 p.G84E and p.R217C did not associate with the development of breast cancer in European women, neither in the overall analysis (OR = 1.035, 95% CI = 0.859–1.246, P = 0.718 and OR = 0.798, 95% CI = 0.482–1.322, P = 0.381 respectively), nor in specific high-risk subgroups or breast cancer subtypes. Thus, although involved in breast cancer progression, HOXB13 is not a material breast cancer susceptibility gene.
356. A privacy-preserving federated learning infrastructure for prostate segmentation on T2-Weighted MRI
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Zerka, Fadila, primary, Sunoqrot, Mohammed, additional, Abrahamsen, Bendik, additional, Patsanis, Alexandros, additional, Bathen, Tone Frost, additional, and Elschot, Mattijs, additional
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357. PSMA-PET vs mpMRI in prostate cancer patients with biochemical recurrence
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Knudtsen, Ingerid, primary, Abrahamsen, Bendik, additional, Selnæs, Kirsten, additional, Elschot, Mattijs, additional, Langorgen, Sverre, additional, Keil, Thomas, additional, Johansen, Håkon, additional, Bertilsson, Helena, additional, Halvorsen, Dag, additional, Tandstad, Torgrim, additional, and Bathen, Tone, additional
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358. A deep learning-based quality control system for co-registration of prostate MR images
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Sunoqrot, Mohammed R. S., primary, Selnæs, Kirsten M., additional, Abrahamsen, Bendik S., additional, Patsanis, Alexandros, additional, Nketiah, Gabriel A., additional, Bathen, Tone F., additional, and Elschot, Mattijs, additional
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359. Reducing streak artefacts in radial MR fingerprinting of the prostate through automated channel removal
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Sørland, Kaia, primary, Trimble, Cristopher, additional, Sandsmark, Elise, additional, Bathen, Tone, additional, Elschot, Mattijs, additional, and Cloos, Martijn, additional
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360. Developing a Delta Radiomics Framework for Prostate Cancer Progression Biomarkers in Patients under Active Surveillance: Pilot Study
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Dewi, Dyah Ekashanti Octorina, primary, Sunoqrot, Mohammed R. S., additional, Nketiah, Gabriel Addio, additional, Sandsmark, Elise, additional, Langørgen, Sverre, additional, Bertilsson, Helena, additional, Elschot, Mattijs, additional, and Bathen, Tone, additional
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361. Incorporating saturation bands into MR Fingerprinting reduces streaking artefacts
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Trimble, Christopher, primary, Sørland, Kaia, additional, Sandsmark, Elise, additional, Elschot, Mattijs, additional, Bathen, Tone, additional, and Cloos, Martijn, additional
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362. Integrative metabolic and transcriptomic profiling of prostate cancer tissue containing reactive stroma.
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Andersen, Maria K., Rise, Kjersti, Giskeødegård, Guro F., Richardsen, Elin, Bertilsson, Helena, Størkersen, Øystein, Bathen, Tone F., Rye, Morten, and Tessem, May-Britt
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Reactive stroma is a tissue feature commonly observed in the tumor microenvironment of prostate cancer and has previously been associated with more aggressive tumors. The aim of this study was to detect differentially expressed genes and metabolites according to reactive stroma content measured on the exact same prostate cancer tissue sample. Reactive stroma was evaluated using histopathology from 108 fresh frozen prostate cancer samples gathered from 43 patients after prostatectomy (Biobank1). A subset of the samples was analyzed both for metabolic (n = 85) and transcriptomic alterations (n = 78) using high resolution magic angle spinning magnetic resonance spectroscopy (HR-MAS MRS) and RNA microarray, respectively. Recurrence-free survival was assessed in patients with clinical follow-up of minimum five years (n = 38) using biochemical recurrence (BCR) as endpoint. Multivariate metabolomics and gene expression analysis compared low (≤15%) against high reactive stroma content (≥16%). High reactive stroma content was associated with BCR in prostate cancer patients even when accounting for the influence of Grade Group (Cox hazard proportional analysis, p = 0.013). In samples with high reactive stroma content, metabolites and genes linked to immune functions and extracellular matrix (ECM) remodeling were significantly upregulated. Future validation of these findings is important to reveal novel biomarkers and drug targets connected to immune mechanisms and ECM in prostate cancer. The fact that high reactive stroma grading is connected to BCR adds further support for the clinical integration of this histopathological evaluation. [ABSTRACT FROM AUTHOR]
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- 2018
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363. Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized.
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Rye, Morten Beck, Bertilsson, Helena, Andersen, Maria K, Rise, Kjersti, Bathen, Tone F, Drabløs, Finn, and Tessem, May-Britt
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Background: The relationship between cholesterol and prostate cancer has been extensively studied for decades, where high levels of cellular cholesterol are generally associated with cancer progression and less favorable outcomes. However, the role of in vivo cellular cholesterol synthesis in this process is unclear, and data on the transcriptional activity of cholesterol synthesis pathway genes in tissue from prostate cancer patients are inconsistent.Methods: A common problem with cancer tissue data from patient cohorts is the presence of heterogeneous tissue which confounds molecular analysis of the samples. In this study we present a general method to minimize systematic confounding from stroma tissue in any prostate cancer cohort comparing prostate cancer and normal samples. In particular we use samples assessed by histopathology to identify genes enriched and depleted in prostate stroma. These genes are then used to assess stroma content in tissue samples from other prostate cancer cohorts where no histopathology is available. Differential expression analysis is performed by comparing cancer and normal samples where the average stroma content has been balanced between the sample groups. In total we analyzed seven patient cohorts with prostate cancer consisting of 1713 prostate cancer and 230 normal tissue samples.Results: When stroma confounding was minimized, differential gene expression analysis over all cohorts showed robust and consistent downregulation of nearly all genes in the cholesterol synthesis pathway. Additional Gene Ontology analysis also identified cholesterol synthesis as the most significantly altered metabolic pathway in prostate cancer at the transcriptional level.Conclusion: The surprising observation that cholesterol synthesis genes are downregulated in prostate cancer is important for our understanding of how prostate cancer cells regulate cholesterol levels in vivo. Moreover, we show that tissue heterogeneity explains the lack of consistency in previous expression analysis of cholesterol synthesis genes in prostate cancer. [ABSTRACT FROM AUTHOR]- Published
- 2018
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364. Ex vivo metabolic fingerprinting identifies biomarkers predictive of prostate cancer recurrence following radical prostatectomy.
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Braadland, Peder R, Giskeødegård, Guro, Sandsmark, Elise, Bertilsson, Helena, Euceda, Leslie R, Hansen, Ailin F, Guldvik, Ingrid J, Selnæs, Kirsten M, Grytli, Helene H, Katz, Betina, Svindland, Aud, Bathen, Tone F, Eri, Lars M, Nygård, Ståle, Berge, Viktor, Taskén, Kristin A, and Tessem, May-Britt
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This corrects the article DOI: 10.1038/bjc.2017.346 [ABSTRACT FROM AUTHOR]
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- 2018
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365. Metabolic consequences of perioperative oral carbohydrates in breast cancer patients - an explorative study.
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Lende, Tone Hoel, Austdal, Marie, Bathen, Tone Frost, Varhaugvik, Anne Elin, Skaland, Ivar, Gudlaugsson, Einar, Egeland, Nina G., Lunde, Siri, Akslen, Lars A., Jonsdottir, Kristin, Janssen, Emiel A. M., Søiland, Håvard, and Baak, Jan P. A.
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Background: The metabolic consequences of preoperative carbohydrate load in breast cancer patients are not known. The present explorative study investigated the systemic and tumor metabolic changes after preoperative per-oral carbohydrate load and their influence on tumor characteristics and survival.Methods: The study setting was on university hospital level with primary and secondary care functions in south-west Norway. Serum and tumor tissue were sampled from a population-based cohort of 60 patients with operable breast cancer who were randomized to either per-oral carbohydrate load (preOp™; n = 25) or standard pre-operative fasting (n = 35) before surgery. Magnetic resonance (MR) metabolomics was performed on serum samples from all patients and high-resolution magic angle spinning (HR-MAS) MR analysis on 13 tumor samples available from the fasting group and 16 tumor samples from the carbohydrate group.Results: Fourteen of 28 metabolites were differently expressed between fasting and carbohydrate groups. Partial least squares discriminant analysis showed a significant difference in the metabolic profile between the fasting and carbohydrate groups, compatible with the endocrine effects of insulin (i.e., increased serum-lactate and pyruvate and decreased ketone bodies and amino acids in the carbohydrate group). Among ER-positive tumors (n = 18), glutathione was significantly elevated in the carbohydrate group compared to the fasting group (p = 0.002), with a positive correlation between preoperative S-insulin levels and the glutathione content in tumors (r = 0.680; p = 0.002). In all tumors (n = 29), glutamate was increased in tumors with high proliferation (t-test; p = 0.009), independent of intervention group. Moreover, there was a positive correlation between tumor size and proliferation markers in the carbohydrate group only. Patients with ER-positive / T2 tumors and high tumor glutathione (≥1.09), high S-lactate (≥56.9), and high S-pyruvate (≥12.5) had inferior clinical outcomes regarding relapse-free survival, breast cancer-specific survival, and overall survival. Moreover, Integrated Pathway Analysis (IPA) in serum revealed activation of five major anabolic metabolic networks contributing to proliferation and growth.Conclusions: Preoperative carbohydrate load increases systemic levels of lactate and pyruvate and tumor levels of glutathione and glutamate in ER-positive patients. These biological changes may contribute to the inferior clinical outcomes observed in luminal T2 breast cancer patients.Trial Of Registration: ClinicalTrials.gov; NCT03886389. Retrospectively registered March 22, 2019. [ABSTRACT FROM AUTHOR]- Published
- 2019
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366. Performance of magnetic resonance imaging‐based prostate cancer risk calculators and decision strategies in two large European medical centres.
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Davik, Petter, Remmers, Sebastiaan, Elschot, Mattijs, Roobol, Monique J., Bathen, Tone Frost, and Bertilsson, Helena
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DISEASE risk factors , *ENDORECTAL ultrasonography , *MAGNETIC resonance , *PROSTATE cancer , *MAGNETIC resonance imaging - Abstract
Objectives: To compare the performance of currently available biopsy decision support tools incorporating magnetic resonance imaging (MRI) findings in predicting clinically significant prostate cancer (csPCa). Patients and Methods: We retrospectively included men who underwent prostate MRI and subsequent targeted and/or systematic prostate biopsies in two large European centres. Available decision support tools were identified by a PubMed search. Performance was assessed by calibration, discrimination, decision curve analysis (DCA) and numbers of biopsies avoided vs csPCa cases missed, before and after recalibration, at risk thresholds of 5%–20%. Results: A total of 940 men were included, 507 (54%) had csPCa. The median (interquartile range) age, prostate‐specific antigen (PSA) level, and PSA density (PSAD) were 68 (63–72) years, 9 (7–15) ng/mL, and 0.20 (0.13–0.32) ng/mL2, respectively. In all, 18 multivariable risk calculators (MRI‐RCs) and dichotomous biopsy decision strategies based on MRI findings and PSAD thresholds were assessed. The Van Leeuwen model and the Rotterdam Prostate Cancer Risk Calculator (RPCRC) had the best discriminative ability (area under the receiver operating characteristic curve 0.86) of the MRI‐RCs that could be assessed in the whole cohort. DCA showed the highest clinical utility for the Van Leeuwen model, followed by the RPCRC. At the 10% threshold the Van Leeuwen model would avoid 22% of biopsies, missing 1.8% of csPCa, whilst the RPCRC would avoid 20% of biopsies, missing 2.6% of csPCas. These multivariable models outperformed all dichotomous decision strategies based only on MRI‐findings and PSAD. Conclusions: Even in this high‐risk cohort, biopsy decision support tools would avoid many prostate biopsies, whilst missing very few csPCa cases. The Van Leeuwen model had the highest clinical utility, followed by the RPCRC. These multivariable MRI‐RCs outperformed and should be favoured over decision strategies based only on MRI and PSAD. [ABSTRACT FROM AUTHOR]
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- 2024
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367. 1099: Salvage radiotherapy of recurrent prostate cancer after PSMA PET/MRI and PET/CT.
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Knudtsen, Ingerid S., Abrahamsen, Bendik S., Selnæs, Kirsten M., Langørgen, Sverre, Keil, Thomas M., Johansen, Håkon, Castillejo, Miguel J., Bogsrud, Trond V., Aarsæther, Erling J., Haugnes, Hege S., Tandstad, Torgrim, Elschot, Mattijs, and Bathen, Tone F.
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PROSTATE cancer , *MAGNETIC resonance imaging , *RADIOTHERAPY - Published
- 2024
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368. Association of serum cortisol and cortisone levels and risk of recurrence after endocrine treatment in breast cancer.
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Wang, Feng, Giskeødegård, Guro F., Skarra, Sissel, Engstrøm, Monica J., Hagen, Lars, Geisler, Jürgen, Mikkola, Tomi S., Tikkanen, Matti J., Debik, Julia, Reidunsdatter, Randi J., and Bathen, Tone F.
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CORTISONE , *BREAST cancer , *METASTATIC breast cancer , *STEROID hormones , *HYDROCORTISONE , *CANCER radiotherapy , *RADIOTHERAPY - Abstract
Metabolic reprogramming in breast cancer involves changes in steroid hormone synthesis and metabolism. Alterations in estrogen levels in both breast tissue and blood may influence carcinogenesis, breast cancer growth, and response to therapy. Our aim was to examine whether serum steroid hormone concentrations could predict the risk of recurrence and treatment-related fatigue in patients with breast cancer. This study included 66 postmenopausal patients with estrogen receptor-positive breast cancer who underwent surgery, radiotherapy, and adjuvant endocrine treatment. Serum samples were collected at six different time points [before the start of radiotherapy (as baseline), immediately after radiotherapy, and then 3, 6, 12 months, and 7–12 years after radiotherapy]. Serum concentrations of eight steroid hormones (cortisol, cortisone, 17α-hydroxyprogesterone, 17β-estradiol, estrone, androstenedione, testosterone, and progesterone) were measured using a liquid chromatography–tandem mass spectrometry-based method. Breast cancer recurrence was defined as clinically proven relapse/metastatic breast cancer or breast cancer-related death. Fatigue was assessed with the QLQ-C30 questionnaire. Serum steroid hormone concentrations measured before and immediately after radiotherapy differed between relapse and relapse-free patients [(accuracy 68.1%, p = 0.02, and 63.2%, p = 0.03, respectively, partial least squares discriminant analysis (PLS-DA)]. Baseline cortisol levels were lower in patients who relapsed than in those who did not (p < 0.05). The Kaplan–Meier analysis showed that patients with high baseline concentrations of cortisol (≥ median) had a significantly lower risk of breast cancer recurrence than patients with low cortisol levels (
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- 2023
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369. T2-weighted MRI-derived textural features reflect prostate cancer aggressiveness: preliminary results.
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Nketiah, Gabriel, Elschot, Mattijs, Kim, Eugene, Teruel, Jose, Scheenen, Tom, Bathen, Tone, Selnæs, Kirsten, Teruel, Jose R, Scheenen, Tom W, Bathen, Tone F, and Selnæs, Kirsten M
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DIAGNOSIS , *PROSTATE cancer , *PROSTATECTOMY , *DIFFUSION magnetic resonance imaging , *GLEASON grading system , *PHARMACOKINETICS , *TEXTURE analysis (Image processing) - Abstract
Purpose: To evaluate the diagnostic relevance of T2-weighted (T2W) MRI-derived textural features relative to quantitative physiological parameters derived from diffusion-weighted (DW) and dynamic contrast-enhanced (DCE) MRI in Gleason score (GS) 3+4 and 4+3 prostate cancers.Materials and Methods: 3T multiparametric-MRI was performed on 23 prostate cancer patients prior to prostatectomy. Textural features [angular second moment (ASM), contrast, correlation, entropy], apparent diffusion coefficient (ADC), and DCE pharmacokinetic parameters (Ktrans and Ve) were calculated from index tumours delineated on the T2W, DW, and DCE images, respectively. The association between the textural features and prostatectomy GS and the MRI-derived parameters, and the utility of the parameters in differentiating between GS 3+4 and 4+3 prostate cancers were assessed statistically.Results: ASM and entropy correlated significantly (p < 0.05) with both GS and median ADC. Contrast correlated moderately with median ADC. The textural features correlated insignificantly with Ktrans and Ve. GS 4+3 cancers had significantly lower ASM and higher entropy than 3+4 cancers, but insignificant differences in median ADC, Ktrans, and Ve. The combined texture-MRI parameters yielded higher classification accuracy (91%) than the individual parameter sets.Conclusion: T2W MRI-derived textural features could serve as potential diagnostic markers, sensitive to the pathological differences in prostate cancers.Key Points: • T2W MRI-derived textural features correlate significantly with Gleason score and ADC. • T2W MRI-derived textural features differentiate Gleason score 3+4 from 4+3 cancers. • T2W image textural features could augment tumour characterization. [ABSTRACT FROM AUTHOR]- Published
- 2017
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370. Changes to Intermediary Metabolites in Sporadic and LRRK2 Parkinson’s Disease Demonstrated by Proton Magnetic Resonance Spectroscopy
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O. Aasly, Jan, Sæther, Oddbjørn, K. Johansen, Krisztina, F. Bathen, Tone, F. Giskeødegård, Guro, and R. White, Linda
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Background. Parkinson’s disease (PD) remains a clinical diagnosis and biomarkers are needed to detect the disease as early as possible. Genetically determined PD provides an opportunity for studying metabolic differences in connection with disease development. Objectives. To study the levels of intermediary metabolites in cerebrospinal fluid (CSF) from patients with PD, either of sporadic type or in carriers of the LRRK2 p.G2019S mutation. Methods. Results from patients with sporadic PD or LRRK2-PD were compared with asymptomatic LRRK2 mutation carriers and healthy control individuals. CSF was analysed by proton MR spectroscopy (1H-MRS) giving reliable results for 16 intermediary metabolites. Partial least squares discriminant analysis (PLS-DA) was applied to study group differences. Results. PLS-DA distinguished PD patients from healthy individuals based on the metabolites identified in CSF, with 2-hydroxybutyrate, glutamine, and dimethyl sulphone largely contributing to the separations. Conclusion. Speculatively, all three metabolites could alter concentration in response to metabolic changes connected with neurodegeneration; glutamine as a means of removing excess nitrogen from brain, dimethyl sulphone as an anti-inflammatory agent, and 2-hydroxybutyrate in connection with altered glutathione metabolism. Potentially, 1H-MRS is a promising tool for identifying novel biomarkers for PD.
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- 2015
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371. Lipoprotein subfraction profiling in the search of new risk markers for myocardial infarction: The HUNT study.
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Sperstad, Sigri Bakken, Sæther, Julie Caroline, Klevjer, Marie, Giskeødegård, Guro Fanneløb, Bathen, Tone Frost, Røsbjørgen, Ragnhild, Dalen, Håvard, and Bye, Anja
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MYOCARDIAL infarction , *NUCLEAR magnetic resonance spectroscopy , *HIGH density lipoproteins , *BLOOD lipoproteins - Abstract
Background: Traditional biomarkers used to measure risk of myocardial infarction (MI) only explain a modest proportion of the incidence. Lipoprotein subfractions have the potential to improve risk prediction of MI. Aim: We aimed to identify lipoprotein subfractions that were associated with imminent MI risk. Methods: We identified apparently healthy participants with a predicted low 10-year risk of MI from The Trøndelag Health Survey 3 (HUNT3) that developed MI within 5 years after inclusion (cases, n = 50) and 100 matched controls. Lipoprotein subfractions were analyzed in serum by nuclear magnetic resonance spectroscopy at time of inclusion in HUNT3. Lipoprotein subfractions were compared between cases and controls in the full population (N = 150), and in subgroups of males (n = 90) and females (n = 60). In addition, a sub analysis was performed in participants that experienced MI within two years and their matched controls (n = 56). Results: None of the lipoprotein subfractions were significantly associated with future MI when adjusting for multiple testing (p<0.002). At nominal significance level (p<0.05), the concentration of apolipoprotein A1 in the smallest high-density lipoprotein (HDL) subfractions was higher in cases compared to controls. Further, in sub analyses based on sex, male cases had lower lipid concentration within the large HDL subfractions and higher lipid concentration within the small HDL subfractions compared to male controls (p<0.05). No differences were found in lipoprotein subfractions between female cases and controls. In sub analysis of individuals suffering from MI within two years, triglycerides in low-density lipoprotein were higher among cases (p<0.05). Conclusion: None of the investigated lipoprotein subfractions were associated with future MI after adjustment for multiple testing. However, our findings suggests that HDL subfractions may be of interest in relation to risk prediction for MI, especially in males. This need to be further investigated in future studies. [ABSTRACT FROM AUTHOR]
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- 2023
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372. Small LDL subfractions are associated with coronary atherosclerosis despite no differences in conventional lipids.
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Sæther, Julie Caroline, Klevjer, Marie, Giskeødegård, Guro Fanneløb, Bathen, Tone Frost, Gigante, Bruna, Gjære, Sigrid, Myhra, Marthe, Vesterbekkmo, Elisabeth Kleivhaug, Wiseth, Rune, Madssen, Erik, and Bye, Anja
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CORONARY artery disease , *LOW density lipoproteins , *NUCLEAR magnetic resonance , *CORONARY angiography , *LIPIDS , *TWO-way analysis of variance - Abstract
Lipoprotein subfractions currently represent a new source of cardiovascular disease (CVD) risk markers that may provide more information than conventional lipid measures. We aimed to investigate whether lipoprotein subfractions are associated with coronary atherosclerosis in patients without prior known CVD. Fasting serum samples from 60 patients with suspected coronary artery disease (CAD) were collected before coronary angiography and analyzed by nuclear magnetic resonance (NMR) spectroscopy. The severity of coronary atherosclerosis was quantified by the Gensini score (≤20.5 = nonsignificant coronary atherosclerosis, 20.6–30.0 = intermediate coronary atherosclerosis, ≥30.1 = significant CAD). Differences in lipoprotein subfractions between the three Gensini groups were assessed by two-way ANOVA, adjusted for statin use. Despite no differences in conventional lipid measures between the three Gensini groups, patients with significant CAD had higher apolipoprotein-B/apolipoprotein-A1 ratio, 30% more small and dense low-density lipoprotein 5 (LDL-5) particles, and increased levels of cholesterol, triglycerides, and phospholipids within LDL-5 compared with patients with nonsignificant coronary atherosclerosis and intermediate coronary atherosclerosis (P ≤ 0.001). In addition, the low-density lipoprotein (LDL) cholesterol/high-density lipoprotein cholesterol ratio, and triglyceride levels of LDL 4 were significantly increased in patients with significant CAD compared with patients with nonsignificant coronary atherosclerosis. In conclusion, small and dense lipoprotein subfractions were associated with coronary atherosclerosis in patients without prior CVD. Additional studies are needed to explore whether lipoprotein subfractions may represent biomarkers offering a clinically meaningful improvement in the risk prediction of CAD. [ABSTRACT FROM AUTHOR]
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- 2023
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373. Associations of lipoprotein particle profile and objectively measured physical activity and sedentary time in schoolchildren: a prospective cohort study.
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Jones, Paul Remy, Rajalahti, Tarja, Resaland, Geir Kåre, Aadland, Eivind, Steene-Johannessen, Jostein, Anderssen, Sigmund Alfred, Bathen, Tone Frost, Andreassen, Trygve, Kvalheim, Olav Martin, and Ekelund, Ulf
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LIPOPROTEINS , *SEDENTARY lifestyles , *TRIGLYCERIDES , *PROTON magnetic resonance spectroscopy , *SERUM , *ACCELEROMETERS , *PHYSICAL activity , *RANDOMIZED controlled trials , *EXERCISE intensity , *DESCRIPTIVE statistics , *DISEASE prevalence , *SCHOOL children , *STATISTICAL sampling , *LONGITUDINAL method - Abstract
Background: Our understanding of the mechanisms through which physical activity might benefit lipoprotein metabolism is inadequate. Here we characterise the continuous associations between physical activity of different intensities, sedentary time, and a comprehensive lipoprotein particle profile. Methods: Our cohort included 762 fifth grade (mean [SD] age = 10.0 [0.3] y) Norwegian schoolchildren (49.6% girls) measured on two separate occasions across one school year. We used targeted proton nuclear magnetic resonance (1H NMR) spectroscopy to produce 57 lipoprotein measures from fasted blood serum samples. The children wore accelerometers for seven consecutive days to record time spent in light-, moderate-, and vigorous-intensity physical activity, and sedentary time. We used separate multivariable linear regression models to analyse associations between the device-measured activity variables—modelled both prospectively (baseline value) and as change scores (follow-up minus baseline value)—and each lipoprotein measure at follow-up. Results: Higher baseline levels of moderate-intensity and vigorous-intensity physical activity were associated with a favourable lipoprotein particle profile at follow-up. The strongest associations were with the larger subclasses of triglyceride-rich lipoproteins. Sedentary time was associated with an unfavourable lipoprotein particle profile, the pattern of associations being the inverse of those in the moderate-intensity and vigorous-intensity physical activity analyses. The associations with light-intensity physical activity were more modest; those of the change models were weak. Conclusion: We provide evidence of a prospective association between time spent active or sedentary and lipoprotein metabolism in schoolchildren. Change in activity levels across the school year is of limited influence in our young, healthy cohort. Trial registration: ClinicalTrials.gov, #NCT02132494. Registered 7th April 2014 [ABSTRACT FROM AUTHOR]
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- 2022
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374. Lipoprotein and metabolite associations to breast cancer risk in the HUNT2 study.
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Debik, Julia, Schäfer, Hartmut, Andreassen, Trygve, Wang, Feng, Fang, Fang, Cannet, Claire, Spraul, Manfred, Bathen, Tone F., and Giskeødegård, Guro F.
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PERIMENOPAUSE , *TRIGLYCERIDES , *LIPOPROTEINS , *RESEARCH funding , *BREAST tumors , *LONGITUDINAL method - Abstract
Background: The aim of this study was to gain an increased understanding of the aetiology of breast cancer, by investigating possible associations between serum lipoprotein subfractions and metabolites and the long-term risk of developing the disease.Methods: From a cohort of 65,200 participants within the Trøndelag Health Study (HUNT study), we identified all women who developed breast cancer within a 22-year follow-up period. Using nuclear magnetic resonance (NMR) spectroscopy, 28 metabolites and 89 lipoprotein subfractions were quantified from prediagnostic serum samples of future breast cancer patients and matching controls (n = 1199 case-control pairs).Results: Among premenopausal women (554 cases) 14 lipoprotein subfractions were associated with long-term breast cancer risk. In specific, different subfractions of VLDL particles (in particular VLDL-2, VLDL-3 and VLDL-4) were inversely associated with breast cancer. In addition, inverse associations were detected for total serum triglyceride levels and HDL-4 triglycerides. No significant association was found in postmenopausal women.Conclusions: We identified several associations between lipoprotein subfractions and long-term risk of breast cancer in premenopausal women. Inverse associations between several VLDL subfractions and breast cancer risk were found, revealing an altered metabolism in the endogenous lipid pathway many years prior to a breast cancer diagnosis. [ABSTRACT FROM AUTHOR]- Published
- 2022
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375. Evaluating the Impact of High Intensity Interval Training on Axial Psoriatic Arthritis Based on MR Images.
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Chronaiou, Ioanna, Giskeødegård, Guro Fanneløb, Neubert, Ales, Hoffmann-Skjøstad, Tamara Viola, Thomsen, Ruth Stoklund, Hoff, Mari, Bathen, Tone Frost, and Sitter, Beathe
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MAGNETIC resonance imaging , *PSORIATIC arthritis , *INTERVAL training , *COMPUTER-assisted image analysis (Medicine) , *JOINT pain - Abstract
High intensity interval training (HIIT) has been shown to benefit patients with psoriatic arthritis (PsA). However, magnetic resonance (MR) imaging has uncovered bone marrow edema (BME) in healthy volunteers after vigorous exercise. The purpose of this study was to investigate MR images of the spine of PsA patients for changes in BME after HIIT. PsA patients went through 11 weeks of HIIT (N = 19, 4 men, median age 52 years) or no change in physical exercise habits (N = 20, 8 men, median age 45 years). We acquired scores for joint affection and pain and short tau inversion recovery (STIR) and T1-weighted MR images of the spine at baseline and after 11 weeks. MR images were evaluated for BME by a trained radiologist, by SpondyloArthritis Research Consortium of Canada (SPARCC) scoring, and by extraction of textural features. No significant changes of BME were detected in MR images of the spine after HIIT. This was consistent for MR image evaluation by a radiologist, by SPARCC, and by texture analysis. Values of textural features were significantly different in BME compared to healthy bone marrow. In conclusion, BME in spine was not changed after HIIT, supporting that HIIT is safe for PsA patients. [ABSTRACT FROM AUTHOR]
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- 2022
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376. Atherogenic lipidomics profile in healthy individuals with low cardiorespiratory fitness: The HUNT3 fitness study.
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Nodeland, Markus, Klevjer, Marie, Sæther, Julie, Giskeødegård, Guro, Bathen, Tone Frost, Wisløff, Ulrik, and Bye, Anja
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CARDIOPULMONARY fitness , *CHOLESTEROL content of food , *AEROBIC capacity , *PHYSICAL activity , *HIGH density lipoproteins , *NUCLEAR magnetic resonance - Abstract
Low cardiorespiratory fitness is a strong and independent risk factor for cardiovascular disease (CVD). Serum profiling of healthy individuals with large differences in cardiorespiratory fitness may therefore reveal early biomarkers of CVD development. Thus, we aimed to identify circulating lipoprotein subfractions differentially expressed between groups of individuals with large differences in cardiorespiratory fitness, measured as maximal oxygen uptake (VO 2max). Healthy subjects (40–59 years) were selected from the third wave of the Trøndelag health study (HUNT3) based on having an age-dependent high VO 2max (47.1 ± 7.7 mL kg−1·min−1, n = 103) or low VO 2max (31.4 ± 4.9 mL kg−1·min−1, n = 108). The individuals were matched on gender, age, physical activity level and fasting status. 99 lipoprotein subfractions were quantified in serum samples using nuclear magnetic resonance (NMR) lipidomics. Standard clinical analyses showed similar levels of total cholesterol, low-density lipoprotein (LDL)-cholesterol and high-density lipoprotein (HDL)-cholesterol between the groups, and slightly higher levels of triglycerides in participants with low VO 2max. Thirteen lipoprotein subfractions were increased in the low VO 2max group compared to the high VO 2max group (p < 0.005), including mainly large very low-density lipoprotein (VLDL) subfractions. In addition, triglyceride levels in small-sized HDL and LDL particles were increased in participants with low VO 2max. Correlation analyses between VO 2max and lipoproteins subfractions displayed a negative correlation between VO 2max and the levels of cholesterol and phospholipids in the small HDL particles. The lipoprotein profile of individuals with low VO 2max is similar to the profile of insulin resistant individuals. Low VO 2max was associated with enrichment of large VLDL particles, as well as an increased triglycerides content in the small and dense HDL and LDL particles. This unfavorable lipid profile is likely to be involved in the strong associations between VO 2max and CVD. [Display omitted] • The circulating levels of very low-density lipoprotein (VLDL) subfractions were significantly higher in participants with low cardiorespiratory fitness (VO 2max) compared to participants with high VO 2max. • Triglyceride levels in small-sized high-density lipoprotein (HDL) and low-density lipoprotein (LDL) particles were higher in participants with low VO 2max. • When comparing healthy individuals with high and low VO 2max , the lipoprotein subfraction profile of individuals with low VO 2max showed similarities to the profile of insulin resistant individuals. • The identified lipoprotein subfractions associated with VO 2max may represent early risk markers of CVD development. [ABSTRACT FROM AUTHOR]
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- 2022
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377. Cross-sectional and prospective associations between aerobic fitness and lipoprotein particle profile in a cohort of Norwegian schoolchildren.
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Jones, Paul Remy, Rajalahti, Tarja, Resaland, Geir Kåre, Aadland, Eivind, Steene-Johannessen, Jostein, Anderssen, Sigmund Alfred, Bathen, Tone Frost, Andreassen, Trygve, Kvalheim, Olav Martin, and Ekelund, Ulf
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PROTON magnetic resonance , *SCHOOL children , *LOW density lipoproteins , *NUCLEAR magnetic resonance , *LIPID metabolism - Abstract
The associations between aerobic fitness and traditional measures of lipid metabolism in children are uncertain. We investigated whether higher levels of aerobic fitness benefit lipoprotein metabolism by exploring associations with a comprehensive lipoprotein particle profile. In our prospective cohort study, we used targeted proton nuclear magnetic resonance (1H NMR) spectroscopy to profile 57 measures of lipoprotein metabolism from fasting serum samples of 858 fifth-grade Norwegian schoolchildren (49.0% girls; mean age 10.0 years). Aerobic fitness was measured using an intermittent shuttle run aerobic fitness test. We used multiple linear regression adjusted for potential confounders to examine cross-sectional and prospective associations between aerobic fitness and lipoprotein particle profile. Higher levels of aerobic fitness were associated with a favourable lipoprotein particle profile in the cross-sectional analysis, which included inverse associations with all measures of very low-density lipoprotein (VLDL) particles (e.g., −0.06 mmol·L−1 or –0.23 SD units; 95% CI = −0.31, −0.16 for VLDL cholesterol concentration). In the prospective analysis, the favourable pattern of associations persisted, though the individual associations tended to be more consistent with those of the cross-sectional analysis for the VLDL subclass measures compared to the low-density lipoproteins and high-density lipoproteins. Adjustment for adiposity attenuated the associations in both cross-sectional and prospective models. Nevertheless, an independent effect of aerobic fitness remained for some measures. Improving children's aerobic fitness levels should benefit lipoprotein metabolism, though a concomitant reduction in adiposity would likely potentiate this effect. [Display omitted] • Associations between aerobic fitness and lipoprotein particle profile were examined in a cohort of Norwegian schoolchildren. • Aerobic fitness was favourably associated cross-sectionally and prospectively with a number of lipoprotein measures. • The associations tended to be stronger with measures of very low-density lipoprotein (VLDL) particles and triglycerides concentrations. [ABSTRACT FROM AUTHOR]
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- 2021
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378. The effect of sampling procedures and day-to-day variations in metabolomics studies of biofluids.
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Giskeødegård, Guro F., Andreassen, Trygve, Bertilsson, Helena, Tessem, May-Britt, and Bathen, Tone F.
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METABOLITES , *BLOOD lipoproteins , *BENIGN prostatic hyperplasia , *METABOLIC profile tests - Abstract
Metabolomics analysis of biofluids is a feasible tool for disease characterization and monitoring due to its minimally invasive nature. To reduce unwanted variation in biobanks and clinical studies, it is important to determine the effect of external factors on metabolic profiles of biofluids. In this study we examined the effect of sample collection and sample processing procedures on NMR measured serum lipoproteins and small-molecule metabolites in serum and urine, using a cohort of men diagnosed with either prostate cancer or benign prostatic hyperplasia. We determined day-to-day reliability of metabolites by systematic sample collection at two different days, in both fasting and non-fasting conditions. Study participants received prostate massage the first day to assess the differences between urine with and without prostate secretions. Further, metabolic differences between first-void and mid-stream urine samples, and the effect of centrifugation of urine samples before storage were assessed. Our results show that day-to-day reliability is highly variable between metabolites in both serum and urine, while lipoprotein subfractions possess high reliability. Further, fasting status clearly influenced the metabolite concentrations, demonstrating the importance of keeping this condition constant within a study cohort. Day-to-day reliabilities were however comparable in fasting and non-fasting samples. Urine sampling procedures such as sampling of first-void or mid-stream urine, and centrifugation or not before sample storage, were shown to only have minimal effect on the overall metabolic profile, and is thus unlikely to constitute a confounder in clinical studies utilizing NMR derived metabolomics. Image 1 • Serum lipoprotein subfractions possess high day-to-day reliability. • Day-to-day reliability of serum and urine metabolites ranges from low to high. • Prostate massage leads to release of prostate-specific metabolites into urine. • Metabolic differences between first-void and mid-stream urine are small. • Urine metabolite concentrations are minimally affected by pre-freezing centrifugation. [ABSTRACT FROM AUTHOR]
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- 2019
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379. Associations of physical activity and sedentary time with lipoprotein subclasses in Norwegian schoolchildren: The Active Smarter Kids (ASK) study.
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Jones, Paul Remy, Rajalahti, Tarja, Resaland, Geir Kåre, Aadland, Eivind, Steene-Johannessen, Jostein, Anderssen, Sigmund Alfred, Bathen, Tone Frost, Andreassen, Trygve, Kvalheim, Olav Martin, and Ekelund, Ulf
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PHYSICAL activity , *NUCLEAR magnetic resonance spectroscopy , *SCHOOL children - Abstract
Physical activity is favourably associated with certain markers of lipid metabolism. The relationship of physical activity with lipoprotein particle profiles in children is not known. Here we examine cross-sectional associations between objectively measured physical activity and sedentary time with serum markers of lipoprotein metabolism. Our cohort included 880 children (49.0% girls, mean age 10.2 years). Physical activity intensity and time spent sedentary were measured objectively using accelerometers. 30 measures of lipoprotein metabolism were quantified using nuclear magnetic resonance spectroscopy. Multiple linear regression models adjusted for age, sex, sexual maturity and socioeconomic status were used to determine associations of physical activity and sedentary time with lipoprotein measures. Additional models were adjusted for adiposity. Isotemporal substitution models quantified theoretical associations of replacing 30 min of sedentary time with 30 min of moderate- to vigorous-intensity physical activity (MVPA). Time spent in MVPA was associated with a favourable lipoprotein profile independent of sedentary time. There were inverse associations with a number of lipoprotein measures, including most apolipoprotein B-containing lipoprotein subclasses and triglyceride measures, the ratio of total to high-density lipoprotein (HDL) cholesterol, and non-HDL cholesterol concentration. There were positive associations with larger HDL subclasses, HDL cholesterol concentration and particle size. Reallocating 30 min of sedentary time to MVPA had broadly similar associations. Sedentary time was only partly and weakly associated with an unfavourable lipoprotein profile. Physical activity of at least moderate-intensity is associated with a favourable lipoprotein profile in schoolchildren, independent of time spent sedentary, adiposity and other confounders. Image 1 • Moderate- to vigorous-intensity physical activity is associated with a favourable lipoprotein profile in schoolchildren. • These beneficial associations are independent of sedentary time. • Replacing sedentary time with moderate- to vigorous-intensity physical activity is similarly beneficial. • Sedentary time is only partly and weakly associated with an unfavourable profile. [ABSTRACT FROM AUTHOR]
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- 2019
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380. Radiomics in psoriatic arthritis and breast cancer: Assessing disease burden and predicting survival through MR image analysis
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Chronaiou, Ioanna, Sitter, Beate, Bathen, Tone Frost, and Huuse-Røneid, Else Marie
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Medical disciplines: 700 [VDP] - Abstract
Sammendrag Radiomics i psoriasisartritt og brystkreft: Vurdering av sykdom og prediksjon av overlevelse gjennom MR-bildeanalyser Psoriasisartritt er en kronisk inflammatorisk leddsykdom som utvikler seg hos pasienter med hudpsoriasis. Sykdommen innebærer betennelse i ett eller flere ledd og er heterogen med ulike kliniske mønstre. Behandling rettes mot betennelsene og avhenger av sykdommens aggressivitet. Tidlig diagnose og målrettet behandling er viktig for å forhindre progressiv leddskade, deformormasjoner og funksjonshemming som oppstår ved vedvarende betennelse. Brystkreft er den vanligste kreftformen hos kvinner i Norge. Mens kvinner diagnostisert med brystkreft i et tidlig stadium har høy overlevelsesrate, innebærer diagnosen avansert brystkreft en dårligere prognose. Tidlig prognostisk informasjon kan ha betydning for valg av behandling og veilede oppfølging etter behandling. Magnetisk resonans (MR) avbildning kan bistå i diagnose av psoriasisartritt, og brukes t rutinemessig for å vurdere behandlingsrespons i brystkreft. Bildene vurderes kvalitativt ved visuell inspeksjon. Radiologisk tolkning av bilder krever lang trening, er tidkrevende og kan vise høy inter-rater-variasjon. Radiomics, uthenting av kvantitative egenskaper fra medisinske bilder, kan forenkle tolkningav MR-bildene. Det er viktig å finne kvantitative mål fra MR som er pålitelige, sensitive og spesifikke for diagnostiske, prediktive og prognostiske formål. Hensikten med dette prosjektet er å bidra til utvikling av kvantitative analysemetoder for MRbilder og oppnå objektive og kvantitative MR-bildebaserte mål for diagnostiske og prognostiske formål. De spesifikke målene med dette prosjektet var å implementere et rammeverk for behandling og analyse av longitudinelle data innhentet med forskjellige skannere og protokoller, etablere kvantitative MR-bildebaserte mål for subtile beinmargsødem i ryggrad og iliosakralledd hos pasienter med psoriasisartritt, og vurdere prognostisk verdi av tekstur-egenskaper ekstrahert fra dynamisk kontrastforsterkede MR-bilder av lokalavansert brystkreft. Den første artikkelen evaluerte terskling for kvantifisering av benmargsødem i ryggrad og iliosakralledd hos pasienter med psoriasisartritt, og sammenlignet de kvantitative målene fra terskling med et semi-kvantitativt scoringssystem etablert av spondyloarthritis research consortium of Canada (SPARCC). Kvantitative mål fra terskling viste en signifikant positiv Summary Radiomics in psoriatic arthritis and breast cancer: Assessing disease burden and predicting survival through MR image analysis Psoriatic arthritis is a chronic inflammatory joint disease that develops in patients with skin psoriasis and manifests by inflammation in one or multiple joints, and highly heterogeneous distinct clinical patterns. Treatment strategies target inflammation and depend on disease aggressiveness. Early diagnosis and targeted treatment are important in order to prevent progressive joint damage, deformity and disabilities that occur because of persistent inflammation. Breast cancer is the most frequent type of cancer among women in Norway. While women with breast cancer diagnosed at an early stage have high survival rates, advanced breast cancers exhibit poorer prognosis. Early prognostic information can affect the choice of treatment and guide post-treatment follow-up. Magnetic resonance (MR) imaging can assist in the diagnosis of psoriatic arthritis and has been routinely used in assessing treatment response in breast cancer. Clinicians rely mainly on qualitative MR findings, based on visual inspection of the images. Radiological interpretation of images requires long training, is time-consuming and can exhibit high inter-reader variance. Radiomics, the mining of quantitative features from medical images, can assist MR image interpretation. It is important to find quantitative MR image-derived measures that are reliable, sensitive and specific for diagnostic, predictive and prognostic purposes. This project aims to assist in the development of quantitative analysis methods of MR images and obtain objective quantitative MR image-based measures for diagnostic and prognostic purposes. The specific aims of this project included implementing a framework for processing and analysis of data acquired longitudinally and with different scanners and protocols, establishing quantitative MR image-based measures of subtle bone marrow oedema in the spine and the sacroiliac joints (SI) of patients with psoriatic arthritis, and assessing the prognostic value of textural features extracted from dynamic contrast enhanced MR images of locally advanced breast cancer patients. The first paper evaluated thresholding for the quantification of bone marrow oedema in the spine and the SI joints of patients with psoriatic arthritis and compared the quantitative measures provided by thresholding to a semi-quantitative scoring system established by the spondyloarthritis research consortium of Canada (SPARCC). Quantitative measures by thresholding showed a significant positive correlation with the SPARCC scores for both the spine and SI joints, performing better in the spine. The second paper evaluated the effect of high intensity interval training (HIIT) in psoriatic arthritis patients by MR radiological assessment of the spinal bone marrow oedema at baseline and after intervention. In addition, the second paper explored the potential of MR image intensity, gradient and textural features to detect bone marrow oedema changes. Bone marrow oedema in the spine was not changed after HIIT and the features were not associated with HIIT in psoriatic arthritis patients. The third paper assessed the prognostic value of textural features extracted from pre-treatment dynamic contrast-enhanced MR images of breast cancer patients. A clear association between textural features and survival outcome was found. In addition, the textural features showed an added value to the clinical prognostic factors in predicting survival outcomes. In conclusion, this project highlights the use of radiomics, by establishing diagnostic and prognostic quantitative MR image-based measures in both psoriatic arthritis and breast cancer. Results from the studies included in this project should be validated in larger cohorts.
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- 2022
381. Development of an improved pathway analysis - The FunHop story
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Rise, Kjersti, Rye, Morten Beck, Drabløs, Finn, Tessem, May-Britt, Bathen, Tone Frost, and Borgos, Sven Even
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Medisinske Fag: 700::Klinisk medisinske fag: 750 [VDP] - Abstract
Norsk sammendrag Arbeidet som presenteres i denne avhandlingen omhandler metabolisme i prostatakreft, hovedsakelig i form av bruk og forbedring av analyse av biologiske spor. En stor del av oppgaven handler om utvikling av metoden FunHoP, og hvordan denne kan brukes på forskjellige måter og gi ny biologisk innsikt. FunHoP er en Python-basert metode som bruker metabolske spor fra KEGG, sammmen med transkripsjonsuttrykk fra RNA-sekvensering. Basis for avhandlingen er tre vitenskapelige studier. Den første studien handler om metabolisme i prostatakreftprøver gruppert etter innhold av reaktivt stroma. 108 prøver ble histopatologisk evaluert og gradert etter innhold av reaktivt stroma. Av disse ble det målt metabolitter i 85 prøver mens det ble målt genuttrykk i 78 prøver. Multivariat metabolomikk og transkriptomikk ble brukt for å sammenligne grupper med lav andel av stroma (_ 15 %) mot grupper med høy andel reaktivt stroma (_ 16 %). Det ble vist at i grupper med høy andel reaktivt stroma var både gener og metabolitter med tilknytning til funksjoner i immunforsvaret og ekstracellulær matrise oppregulert. Denne studien gav en god introduksjon til metabolisme i prostatakreft, og demonstrerte også hvordan forskjellige typer omics kan brukes sammen for å gi økt forståelse av hvordan biologien henger sammen. I den andre studien sto utvikling og demonstrasjon av FunHoP i fokus. Visualisering er et godt hjelpemiddel i analyse av store mengder data, og en mye brukt metode er å bruke data til å f.eks farge noder for å vise differensielt uttrykte gener, ved hjelp av verktøy som Cytoscape. En ulempe med kombinasjonen KEGG, KEGGScape (som laster inn KEGG-filer i Cytoscape), og Cytoscape er at bare det første genet/proteinet i en node vises. Dette gjør at alle reaksjoner ser ut til å bare kunne katalyseres av ett enzym. Dette stemmer i mange tilfeller ikke overens med biologien. FunHoP utvider noder til å inkludere alle gener i en node, viser brukeren hvordan genene er differensielt uttrykt og hvilken read count de har, før alle genene til slutt slås sammen og differensielt uttrykk på node-nivå kan beregnes. Denne studien viser hvordan FunHoP ble utviklet, og har også to eksempler hvor vi viser hvordan FunHoP gir resultater som både stemmer bedre overens med kjent biologi og gir en bedre visuell forståelse av biologien. I den siste studien ble FunHoP brukt på en alternativ måte for å få fram et nytt nivå av biologisk innsikt. Ved å inkludere lokasjonsdata ble det mulig å differensiere mellom mitokondrielle og ikke-mitokondrielle biologiske spor, samt identifisere de som var en blanding, og se på hvordan differensielt genuttrykk eventuelt endret seg i forskjellige lokasjoner. Her ble genuttrykksdata fra normal- og kreftcellelinjer brukt, sammen med en konsensus av lokasjonsdata fra både eksperimenter og prediksjon. Denne studien viste hvordan FunHoP kunne brukes på alternative måter, at mitokondrielle spor er generelt oppregulert i prostatakreft, og at bruk av lokasjonsdata kan gi mer biologisk innsikt. English summary The work in this thesis revolves around the metabolism of prostate cancer, mainly by using and improving biological pathway analysis. A large part of the thesis is about the development of the method FunHoP, and how this method can be used in different ways and provide new biological insight. FunHoP is a Python based method that uses metabolic pathways from KEGG, along with read counts from RNA-sequencing. The basis for the thesis is three scientific studies. The first study is about metabolism in samples from prostate cancer grouped by their content of reactive stroma. 108 samples were histopathologically evaluated and graded by their content of reactive stroma. Out of these, metabolites were measured in 85 samples and gene expression in 78 samples. Multivariate metabolomics and transcriptomics were used to compare groups with low stroma content (≤ 15 %) to groups with high reactive stroma ≥ 16 %). We found that groups with high content of reactive stroma had upregulated both genes and metabolites related to functions in the immune system and extracellular matrix. This study was a good introduction to metabolism in prostate cancer, and demonstrated how different types of omics can be used together to give new understanding of how the biology works. In the second study, development of FunHoP was the main topic. Visualisation is a great tool in analysis of big data, and a well-known method is to use data to colour nodes in a network to show differential expression, using tools such as Cytoscape. A problem with the combination of KEGG, KEGGScape (which is used to load KEGG files into Cytoscape), and Cytoscape is that only the first gene/protein in each node is shown. This makes all reactions look as if there is only one enzyme able to catalyze the reaction. In many cases, this representation is not biologically correct. FunHoP expands the nodes to include all genes, shows the user how the genes are differentially expressed as well as their read counts, before they are all joined together and differential expression can be calculated on node level. This study shows how FunHoP was developed, and also contains two case studies where we show how FunHoP provides results that both fits better into the known biology, and also gives a better visual understanding to the viewer. In the final study, FunHoP was used in an alternative way to bring out a new level of biological insight. By including cellular localisation data it became possible to differentiate between mitochondrial and nonmitochondrial biological paths, along with those that are a mixture, and see how differentially expressed genes possibly changed between the two location groups. Here we used gene expression from normal and cancerous cell lines, along with a consensus of localisation from both experiments and predictions. This study shows how FunHoP could be used in alternative ways, that mitochondrial pathways are generally upregulated in prostate cancer, and that use of localisation data can give a wider biological insight.
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- 2022
382. Computer-Aided Diagnosis of Prostate Cancer Using Multiparametric MRI: Preprocessing, Segmentation and Quality Control
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Sunoqrot, Mohammed Rasem Sadeq, Elschot, Mattijs, Bathen, Tone Frost, Selnæs, Kirsten Margrete, and Martens, Harald Aagaard
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Medical disciplines: 700 [VDP] - Abstract
Sammendrag Dataassistert diagnostikk av prostatakreft ved bruk av Multiparametrisk MRI: Forbehandling, segmentering og kvalitetskontroll Prostatakreft er den vanligste kreftformen hos menn og den nest hyppigste årsaken til kreftrelaterte dødsfall hos menn på verdensbasis. På grunn av fremskritt innen teknologi og diagnostiske metoder har overlevelsesraten for prostatakreft de siste årene økt og dødeligheten har sunket. Tidlig diagnostikk av prostatakreft er viktig for bedre behandling av sykdommen. Den tradisjonelle diagnostiske prosessen inkluderer måling av forhøyet prostata spesifikt antigen (PSA) i blodet etterfulgt av prøvetaking av prostata biopsi og histopatologisk analyse. Multi-parametrisk magnetisk resonans avbildning (mpMRI) og etablering av internasjonale retningslinjer for bildeopptak og tolkning har bidratt til bedre nøyaktighet i diagnostikken, men tolkningen av MR-bildene er fortsatt i stor grad kvalitativ. Dette har noen begrensninger, for eksempel at tolkningen krever erfarne radiologer, variasjon mellom observatører og at det er tidkrevende arbeid. Med innføring av pakkeforløp for prostatakreft i Norge har antallet MR undersøkelser som gjennomføres for deteksjon av prostatakreft økt kraftig, og det er krevende å skalere opp de nødvendige radiolog-ressursene for å holde tidsrammene som er angitt i pakkeforløpet. Automatiske dataassisterte deteksjons- og diagnosesystemer (CAD) har potensial til å overvinne disse begrensningene ved å bruke MR-bildene i kvantitative modeller som automatiserer, standardiserer og støtter reproduserbar tolkning av radiologiske bilder. Den automatiserte CAD-arbeidsflyten består av flere trinn, for eksempel normalisering og segmentering, før bildene så kan benyttes til å etablere diagnostiske modeller basert på maskinlæring (ML) eller dyp læring (DL). For å sikre effektiv og pålitelig beslutningsstøtte, må alle trinn i arbeidsflyten være generaliserbare, transparente og robuste. CAD for diagnostikk av prostatakreft har ennå ikke blitt innlemmet i klinisk praksis. Målet med denne avhandlingen var derfor å legge til rette for dette ved å utvikle og evaluere nye metoder for bildebehandling, segmentering og kvalitetskontroll for å forbedre generaliserbarheten, gjennomsiktigheten og robustheten til arbeidsflyten i CAD. Denne avhandlingen er basert på tre artikler. I Artikkel I ble en ny automatisert metode for normalisering av T2-vektede (T2W) MR-bilder av prostata utviklet og evaluert ved bruk av to referansevev (fett og muskler). Metoden reduserer intensitetsforskjeller mellom ulike MR-bilder og forbedrer med dette den kvantitative vurderingen av prostatakreft. Artikkel II og III fokuserer på segmenteringsmetoder basert på DL. I Artikkel II ble et helautomatisk kvalitetskontrollsystem for DL-basert prostatasegmentering fra T2-vektete MR-bilder etablert og evaluert. Kvalitetskontrollen identifiserer når segmenteringen blir unøyaktig, og hindrer dermed at senere trinn i CADsystemet baseres på feilaktig informasjon. I Artikkel III blir reproduserbarheten av DLbasert segmentering av hele prostatakjertelen og prostatasoner vurdert. Dette er spesielt viktig for applikasjoner hvor pasienten følges opp med flere MR-undersøkelser over tid (aktiv overvåkning). Forskningsresultatene viser at reproduserbarheten til den beste DLbaserte prostata-segmenteringsmetoden er sammenlignbar med manuell segmentering. Kort oppsummert viser avhandlingen hvordan avanserte, generaliserte og kontrollerte metoder for bildeforbehandling og kvalitetskontroll kan bidra til å forbedre ytelsen og tilliten til CAD-basert beslutningstøtte for diagnostikk av prostatakreft, noe som er et viktig skritt mot klinisk implementering. Summary Computer-Aided Diagnosis of Prostate Cancer Using Multiparametric MRI: Pre-processing, Segmentation and Quality Control Prostate cancer is the most commonly diagnosed cancer in men and the second leading cause of cancer-related deaths in men worldwide. In recent years, and due to advances in technology and diagnostic procedures, prostate cancer survival rates have increased and mortality rates have decreased. Early diagnosis of prostate cancer is critical for better treatment of the disease. The traditional diagnostic process includes measuring elevated prostate-specific antigen (PSA) in the blood followed by prostate biopsy sampling and histopathology analysis. The addition of multiparametric magnetic resonance imaging (mpMRI) and the establishment of international guidelines for image acquisition and interpretation have improved prostate cancer diagnosis. Typically, interpretation of mpMR images is performed qualitatively by a radiologist. This approach has a number of limitations, such as high inter-observer variability, time-consuming nature, dependence on reader opinion and lack of scalability of the manual data processing approach as demand increases. Automated computer-aided detection and diagnosis (CAD) systems have the potential to overcome these limitations and utilize mpMRI by implementing quantitative models to automate, standardize and support reproducible interpretation of radiological images. The automated CAD workflow typically consists of a machine learning algorithm, preceded by several stages of image processing, including pre-processing, segmentation, registration, feature extraction and classification. Each stage depends on the previous stages to finally produce an accurate diagnosis. Errors in any of the stages of the workflow, but especially in the early pre-processing stages, will propagate through the pipeline and can lead to a misdiagnosis of the patient. Consequently, to provide an efficient and trustworthy diagnosis, each stage of a CAD system should be generalizable, transparent and robust. Despite a growing body of evidence showing potential, CAD of prostate cancer has not yet been integrated into clinical practice. This is mainly due to the lack of generalizability, transparency and robustness, which causes a lack of confidence of the radiologists in the capabilities of CAD. To increase the confidence in CAD, its performance should be improved, controlled and generalized. Therefore, the aim of this thesis was to facilitate the integration of automated CAD systems for prostate cancer using mpMRI into clinical practice by developing and evaluating new image normalization, segmentation and quality control methods to improve the generalizability, transparency and robustness of the CAD workflow. This thesis is based on three papers. In Paper I, a novel automated method for prostate T2-weighted (T2W) MR image normalization using dual-reference tissue (fat and muscle) was developed and evaluated. The method was shown to reduce T2W intensity variation between scans and to improve quantitative assessment of prostate cancer on MRI. Papers II and III focused on deep learning (DL)-based prostate segmentation. In Paper II, a fully automated quality control system for DL-based prostate segmentation on T2W MRI was established and evaluated. The system was able to assign an appropriate score based on extracted image features, reflecting the quality of the generated segmentations. This score can be used to distinguish between acceptable and poor DLbased segmentations. In Paper III, the reproducibility of the DL-based segmentations of the whole prostate, peripheral zone, and remaining prostate zones was investigated. This is important for implementing DL-based segmentation methods in CAD system for clinical applications that depend on multiple scans. The study showed that the reproducibility of the best performing DL-based prostate segmentation methods is comparable to that of manual segmentations. In summary, in this thesis advanced image pre-processing and quality control methods were developed and evaluated for CAD of prostate cancer using mpMRI. Ultimately, these automated methods can help improve the performance of and increase the confidence in CAD systems, which is an important step towards their implementation in clinical practice.
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- 2021
383. Bedre seleksjon av pasienter henvist til MR av prostata ved forhøyet PSA eller mistanke om prostatakreft
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Billdal, Daniel Chen, Bertilsson, Helena, and Bathen, Tone Frost
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Bakgrunn: Pakkeforløp for prostatakreft ble introdusert i 2015, og er et standardisert pasientforløp som beskriver organiseringen av utredning og behandling, og konkrete forløpstider. Det er et mål at 70 % av alle Pakkeforløp gjennomføres innenfor anbefalt forløpstid, men kun 48,2 % oppfylte dette kriteriet i Helse Midt-Norge i 2. tertial 2020. Bedre utnyttelse av tilgjengelige ressurser er derfor ønskelig. Hovedoppgaven ønsker å utarbeide en oversiktlig rapport over pasienter som henvises til pre-biopsi MR av prostata, for i fremtiden å kunne utarbeide bedre retningslinjer for henvisning til MR prostata og Pakkeforløp for prostatakreft. Materiale og metode: En retrospektiv deskriptiv studie der vi har sett på pasientjournalene til 412 menn henvist til MR prostata på St. Olavs hospital mellom 1. januar og 31. desember 2016. Det ble samlet inn relevante kliniske variabler om henvisningsårsak, PSA, behandling osv., og forløpstider hvis de var registrert i et Pakkeforløp. Det ble brukt enkel deskriptiv statikk for å beskrive kohorten. Resultater: Forhøyet PSA var den klart vanligste henvisningsårsaken (77 %) til MR prostata. 189 av pasientene hadde positiv biopsi, 106 negativ biopsi, mens det hos 115 manglet informasjon om biopsi-status. 193 pasienter fikk behandling, 46 % med prostatektomi, 27 % med aktiv overvåkning, mens resten fikk stråling eller hormoner. Det var signifikante forskjeller mellom gruppene med positiv eller negativ biopsi når det bl.a. gjaldt alder, PSA, PSA-tetthet og palpasjonsfunn. Av pasienter med positiv eller negativ biopsi var 94 og 92 % registrert i et Pakkeforløp, respektivt, men bare 45 % av de uten informasjon om biopsi-status. Andelen Pakkeforløp som overholdt fristen for behandling var mellom 53-65 %. Konklusjon: Pakkeforløp for prostatakreft starter oftest på bakgrunn av forhøyet PSA. Fastleger bør legge ved informasjon om palpasjonsfunn og familiehistorie i henvisningen til urolog. De fleste pasientene med informasjon om biopsi-status var registrert i et Pakkeforløp. Dagens metoder for screening av prostatakreft er ikke gode nok for å hindre unødvendige MR-undersøkelser og start av Pakkeforløp for prostatakreft. Background: Clinical pathway for prostate cancer was introduced in 2015 and is a standardized patient pathway that describes the organization of diagnosis and treatment, and concrete deadlines for the different steps in the process. The goal is that 70 % of all Clinical pathways are finished within the recommended deadline, but only 48,2 % fulfilled this criterion in Helse Midt-Norge in the 2nd tertial of 2020. Better utilization of available resources is therefore needed. This medical student thesis seeks to present a clear report over the patients that are referred to pre-biopsy MR of the prostate, so we in the future can prepare better guidelines for referral to prostate MR and Clinical pathway for prostate cancer. Materials and methods: A retrospective descriptive study where we investigated the patient journals of 412 men referred to prostate MR at St. Olav’s hospital between January 1st and December 31st, 2016. We gathered relevant clinical variables such as reason for referral, PSA, treatment etc., and time used per step if they were registered in a Clinical pathway. We used simple descriptive statistics to describe this cohort. Results: Elevated PSA was the most common reason for referral (77 %) to prostate MR. 189 of the patients had positive biopsies, 106 had negative biopsies, while 115 lacked information regarding biopsy-status. 193 patients were treated, 46 % with prostatectomy, 27 % with active surveillance, while the rest were treated with radiation or hormones. There was a significant difference in the groups with positive or negative biopsies with respect to age, PSA, PSA-density and prostate examination. Of the patients with positive or negative biopsies, 94 and 92 % were registered in a Clinical pathway, while only 45 % of those without this information was registered. The proportion of Clinical pathways that met the deadline for treatment was between 53-65 %. Conclusion: Clinical pathways for prostate cancer are often started on account of elevated PSA. General practitioners should add information about eventual findings during prostate examination and family history in their referral to the urologist. The majority of patients with information about their biopsy-status were registered in a Clinical pathway. Today’s methods for screening of prostate cancer are not good enough to prevent unnecessary MR-scans and Clinical pathways.
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- 2021
384. Metabolic characterization of breast cancer for improved precision medicine
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Debik, Julia Barbara, Giskeødegård, Guro Fanneløb, Bathen, Tone Frost, and Wang, Hao
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Medisinske Fag: 700::Klinisk medisinske fag: 750 [VDP] - Abstract
Brystkreft er kreftformen som rammer flest kvinner, 1 av 12 kvinner vil bli diagnostisert med brystkreft før fylte 75 år i Norge, og forekomsten fortsetter å øke. Det er en heterogen og kompleks sykdom, pasienter med lik diagnose kan respondere ulikt på samme behandling, og dermed ha forskjellig utfall. Det trengs mer kunnskap om sykdommen for å kunne utvikle mer persontilpasset behandling og bedre metoder for å overvåke behandlingsrespons. Prognosen for de fleste brystkreftpasienter er god, med best prognose ved tidlig oppdagelse. Derfor trengs det også mer kunnskap om de tidlige biologiske mekanismene bak dannelsen av brystkreft, slik at kvinner med høy risiko kan identifiseres tidlig og tilbys tettere oppfølgning, noe som potensielt kan bidra til redusert forekomst av avansert sykdom. Kreftceller har et endret energiomsetning (metabolisme) i forhold til vanlige, friske celler. Raskt voksende kreftceller omdanner næringsstoffer til biomasse samtidig som de må opprettholde en høy energiproduksjon. Denne prosessen kan observeres ved å måle konsentrasjonen av små molekyler, kalt metabolitter, som er aktive komponenter av cellenes energiomsetning. Den metodiske tilnærmingen som benyttes for å måle metabolittene kalles metabolomikk, og kan gjøres blant annet ved magnetisk resonans spektroskopi (MRS), hvor et bredt panel av metabolitter observeres samtidig. Denne metoden har for eksempel vist at metabolske profiler av vevsprøver fra brystkreftpasienter kan si noe om prognosen til pasientene. Hovedmålet i denne avhandlingen har vært å identifisere prognostiske og prediktive biomarkører for brystkreft gjennom en metabolsk tilnærming. For å kunne identifisere robuste biomarkører er det avgjørende å vite hvordan pre-analytiske prosesser kan påvirke metabolittene vi måler. I en biobank blir biologisk materiale oppbevart i fryst form, ofte over mange år. Hvor mange ganger disse prøvene er blitt tint og fryst igjen før analyse kan variere. Det er derfor viktig å vite effekten av slike sykluser på metabolittene, for å kunne tolke resultatene riktig. Artikkel II i denne avhandlingen er en metodeartikkel, hvor det er blitt undersøkt hvordan metabolitter målt i serum og urin, og lipoprotein partikler målt i serum, blir påvirket av gjentatte fryse- og tinesykluser. Denne studien viste at det ikke observeres særlige systematiske effekter av opptil 5 fryse og tine sykluser, noe som betyr at MRS er en god metode for analyser av biobank-prøver. I Artikkel I ble de metabolske effektene av behandling med neoadjuvant kjemoterapi i brystkreftpasienter undersøkt, både i vevsbiopsier og i serum. Tilgangen til to typer biologisk materiale i denne studien gjorde det mulig å undersøke korrelasjonsmønstre mellom metabolitter målt i vev og i serum, i tillegg til innad i hver type biologisk materiale. Svake korrelasjoner ble observert mellom konsentrasjonene av samme metabolitter målt både i vev og i serum. Studien viste også at de metabolske prof Dette skyldes mest sannsynlig at den metabolske profilen av serum gir et mer helhetlig bilde av pasientens tilstand fordi blodet sirkulerer gjennom alle vev og organer i kroppen, mens den metabolske profilen til en vevsprøve beskriver mer direkte hva som foregår i selve svulsten. I Artikkel III ble cirka 2400 serumprøver av friske kvinner fra HUNT2 studien analysert, hvorav halvparten senere utviklet brystkreft. I denne studien fant vi assosiasjoner mellom fremtidig brystkreft og en rekke variabler knyttet til ulike egenskaper av lipoproteiner. Variablene var assosiert med en signifikant økning i risiko, men var ikke sterke nok til å utvikle en robust modell for prediksjon av fremtidig brystkreft. Samlet sett viser avhandlingen at metabolomikk har stor nytteverdi innen brystkreftforskning og kan være et verktøy for utvikling av kliniske biomarkører for forbedret persontilpasset diagnostikk og behandling.ilene av vevsprøvene, men ikke profilene fra serum, kunne predikere overlevelse.
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- 2021
385. Automated segmentation of tumors in dynamic contrast-enhanced MRI of high-risk breast cancer patients undergoing neoadjuvant therapy
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Tafavvoghi, Masoud, Bathen, Tone F., Nketiah, Gabriel A., Jerome, Neil P., and Giskeødegård, Guro F.
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Brystkreft er den vanligste kreft blant kvinner, med nesten 3700 nye tilfeller diagnostisert årlig i Norge. Innenfor denne gruppen diagnostiseres mellom 5 og 10% på stadium III med lokalavansert brystkreft. Presurgical tumor downstaging ved neoadjuvant cellegiftbehandling gjør brystbevarende kirurgi aktuelt for store svulster, og kan også redusere risikoen for lokoregionalt tilbakefall. Tidlig evaluering av brystkreftrespons på behandling kan vise effektiviteten av behandlingen, og gir mulighet for endring av behandlingen hvis det ikke er noe svar. Blant forskjellige bildemodaliteter for evaluering av tumorrespons, har dynamisk kontrastforsterket (DCE) MR vist den høyeste følsomheten ved påvisning av gjenværende svulst etter behandling. Vanligvis segmenterer radiologer svulstene manuelt i hvert stykke DCE-bildeserien, noe som er en svært tidkrevende oppgave. Videre kan manuelle segmenteringer variere mellom forskjellige radiologer, noe som fører til forskjellige estimater av tumorvolumet. Målet med denne oppgaven var å undersøke ved hjelp av en dyp læringsmodell for påvisning og segmentering av brysttumorer i DCE-MR-bilder for å lette måling av tumorvolum for evaluering av respons på behandlingene. For dette formålet ble det brukt et regionalt basert konvolusjonalt nevralt nettverk (maske R-CNN), som sender ut pikselvis forekomst av segmenter av objekter, i dette tilfellet svulster. Et datasett bestående av 111 lokalt avanserte brystkreftpasienter som gjennomgikk neoadjuvant cellegift på tre sykehus - St. Olavs universitetssykehus (Trondheim), Haukeland universitetssykehus (Bergen) og Stavanger universitetssykehus (Stavanger) ble inkludert i studien. Baseline og gjenværende svulst etter hver behandlingssyklus ble segmentert manuelt. Segmenteringene av St. Olavs datasett ble validert av en radiolog, og derfor ble modellen trent på "forskertegnede" segmenteringer av bildene fra de andre institusjonene, og validert separat ved hjelp av bildene fra St. Ytelsen til modellen i segmentering av brysttumorer ble evaluert ved målinger av følsomhet, presisjon, spesifisitet og nøyaktighet. For å vurdere modellens segmenteringer ble også terninglikhetskoeffisientene (DSC) beregnet mellom manuelle segmenteringer og modellspådommene. Modellens nøyaktighet ved påvisning av brysttumorer var 0,84 med sensitivitet og spesifisitet på henholdsvis 0,75 og 0,71. Dessuten var gjennomsnittlig DSC for testsettet 0,84. Basert på de oppnådde resultatene, kan det konkluderes med at den dype læringsmodellen fungerer godt både i deteksjon og segmentering av brysttumorer i DCE-MR-bilder. De oppnådde resultatene var ganske gode, spesielt siden testkullet er helt uavhengig av treningskullene. Imidlertid kan bruk av bilder med forskjellig kontrast til støyforhold (CNR) i opplæringstrinnet forbedre ytelsen til modellen ved å redusere de falske positive deteksjonene. En fremtidig studie bør undersøke den potensielle gunstige effekten av å legge til en del av testsettet i treningssett og videre evaluering av modellen på den gjenværende kohorten. Breast cancer is the most common cancer among women, with nearly 3700 new cases diagnosed annually in Norway. Within this group, between 5 and 10% are diagnosed at stage III with locally-advanced breast cancer. Presurgical tumor downstaging by neoadjuvant chemotherapy treatment makes breast-conserving surgery applicable to large tumors, and may also lower the risk of locoregional relapse. Early evaluation of breast cancer response to treatment can show the effectiveness of that treatment, and gives the opportunity for treatment change if there is no response. Among different imaging modalities for the evaluation of tumor response, dynamic contrast-enhanced (DCE) MRI has shown the highest sensitivity in detection of the residual tumor following treatment. Typically, radiologists manually segment the tumors in each slice of the DCE image series, which is a highly time-consuming task. Moreover, manual segmentations may vary between different radiologists, leading to different estimations of the tumor volume. The aim of this thesis was to investigate using a deep learning model for detection and segmentation of breast tumors in DCE-MR images to facilitate the measurement of tumor volume for evaluation of response to the treatments. For this purpose, a regional-based convolutional neural network (mask R-CNN), which outputs pixel-wise instance segmentation of objects, in this case tumors, was used. A dataset consisting of 111 locally-advanced breast cancer patients who underwent neoadjuvant chemotherapy in three hospitals – St Olav's University Hospital (Trondheim), Haukeland University Hospital (Bergen), and Stavanger University Hospital (Stavanger) was included in the study. The baseline and residual tumor following each treatment cycle was manually segmented. The segmentations of the St. Olav's dataset, was validated by a radiologist, hence, the model was trained on “researcher-drawn” segmentations of the images from the other institutions, and separately validated using the images from St Olav's Hospital. The performance of the model in segmentation of the breast tumors was evaluated by sensitivity, precision, specificity, and accuracy measurements of the model. Also, to assess the model’s segmentations, the dice similarity coefficients (DSC) between manual segmentations and the model predictions was calculated. The model’s accuracy in detection of the breast tumors was 0.84 with sensitivity and specificity of 0.75 and 0.71, respectively. Also, the average DSC of the test set was 0.84. Based on the achieved results, it can be concluded that the deep learning model performs well both in detection and segmentation of the breast tumors in DCE-MR images. The achieved results were quite good especially since the test cohort is completely independent from the training cohorts. However, using images with different contrast to noise ratios (CNR) in the training step could improve the performance of the model, by decreasing the false positive detections. A future study should investigate the potential beneficial effect of adding part of the test set to training set and further evaluation of the model on the remaining cohort.
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- 2021
386. Classification and biomarker identification of prostate tissue from TRAMP mice with hyperpolarized 13C-SIRA.
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Frahm, Anne B., Hill, Deborah, Katsikis, Sotirios, Andreassen, Trygve, Ardenkjær-Larsen, Jan Henrik, Bathen, Tone Frost, Moestue, Siver Andreas, Jensen, Pernille Rose, and Lerche, Mathilde Hauge
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BIOMARKERS , *STABLE isotope analysis , *NUCLEAR magnetic resonance spectroscopy , *CONTRAST media , *PROSTATE , *TISSUE extracts - Abstract
Hyperpolarized 13C isotope resolved spectroscopy boosts NMR signal intensity, which improves signal detection and allows metabolic fluxes to be analyzed. Such hyperpolarized flux data may offer new approaches to tissue classification and biomarker identification that could be translated in vivo. Here we used hyperpolarized stable isotope resolved analysis (SIRA) to measure metabolite specific 13C isotopic enrichments in the central carbon metabolism of mouse prostate. Prostate and tumor tissue samples were acquired from transgenic adenocarcinomas of the mouse prostate (TRAMP) mice. Before euthanasia, mice were injected with [U–13C]glucose intraperitoneally (i.p.). Polar metabolite extracts were prepared, and hyperpolarized 1D-13C NMR spectra were obtained from normal prostate (n = 19) and cancer tissue (n = 19) samples. Binary classification and feature analysis was performed to make a separation model and to investigate differences between samples originating from normal and cancerous prostate tissue, respectively. Hyperpolarized experiments were carried out according to a standardized protocol, which showed a high repeatability (CV = 15%) and an average linewidth in the 1D-13C NMR spectra of 2 ± 0.5 Hz. The resolution of the hyperpolarized 1D-13C spectra was high with little signal overlap in the carbonyl region and metabolite identification was easily accomplished. A discrimination with 95% success rate could be made between samples originating from TRAMP mice prostate and tumor tissue based on isotopomers from uniquely identified metabolites. Hyperpolarized 13C-SIRA allowed detailed metabolic information to be obtained from tissue specimens. The positional information of 13C isotopic enrichments lead to easily interpreted features responsible for high predictive classification of tissue types. This analytical approach has matured, and the robust experimental protocols currently available allow systematic tracking of metabolite flux ex vivo. [Display omitted] • Hyperpolarized 13C NMR on tissue extracts provides high SNR metabolic activity data. • High discernment is obtained between normal and cancer prostate tissue from mice. • Ex vivo biomarker discovery may aid design of in vivo metabolic contrast agents. [ABSTRACT FROM AUTHOR]
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- 2021
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387. Metabolic characterization of breast cancer heterogeneity and response to treatment
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Wood, Leslie Romelia Euceda, Bathen, Tone Frost, and Giskeødegård, Guro Fanneløb
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- 2016
388. Metabolic profiling of breast cancer using ex vivo MR spectroscopy
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Haukaas, Tonje Husby, Bathen, Tone Frost, and Giskeødegård, Guro F.
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- 2016
389. Metabolic biomarkers and reactive stroma grading in human prostate cancer tissue
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Robak, Hanne Schistad, Stoll, Hanna, Tessem, May-Britt, and Bathen, Tone Frodt
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Medical disciplines: 700 [VDP] - Abstract
Introduction Prostate cancer (PCa) is the most common malignancy among men in the western world. Today’s diagnostic methods are not able to separate aggressive and indolent cancer in a sufficient way. Hence, it is difficult to choose which patients who will benefit from active surveillance, and which patients should receive active treatment. The purpose of our study was to reveal more information about metabolic pathways in PCa by combining two novel and emerging diagnostic methods: reactive stroma (RS), the interaction between cancer stroma and epithelium, and metabolic profiling. A grading system for RS has already been proven to add prognostic valuable information, independent of other factors like Gleason score (GS) and Prostate specific antigen (PSA), to today’s predictive model. Altered metabolite concentrations have been found in PCa tissue versus normal tissue, and in high grade versus low grade PCa regarding citrate, spermine and choline containing compounds. The purpose of the study was to investigate whether there is a correlation between RS grade (RSG) and metabolite concentrations. The hypothesis is that RS is an active tissue that is important for cancer development and progression. Because some RSGs have been proven to lead to a worse prognosis than others, one would expect to find an alteration in phenotypes and metabolite concentrations between the different grades. Thereby this could lead to a better understanding of the molecular mechanisms in RS. Methods The tissue samples in the study came from 48 patients who underwent prostatectomy at St. Olavs Hospital, Norway. A new harvesting method was used to obtain one transversal fresh frozen slice from each of the prostates. Later, several samples from each slice were chosen for further examination. Metabolic spectra were acquired by High resolution magic angle spinning (HR-MAS) magnetic resonance spectroscopy (MRS) and each metabolite was quantified by LCModel. A histopathological evaluation considering RSG, GS and tissue composition was made on hematoxylin, erythrosine and saffron (HES) stained sections. The total number of samples was 149, of which 104 contained cancer. Finally, statistical analyses were performed in R to correlate RSG and metabolic concentrations. Linear mixed model (LMM) was used due this model`s ability to adjust for intra-patient correlation, as there are several samples from each patient in our dataset. Fixed effects also adjusted for in the LMM were GS, percentage of tumor, stroma and luminal space. In addition, the Benjamini-Hochberg false discovery rate was applied to correct for multiple testing. Descriptive analyses and log-transformation of the metabolite concentrations were performed in SPSS. Results RSG was graded in the 104 samples that contained cancer tissue. In the dataset, 23 of the samples were graded as RSG 0, 59 graded RSG 1, 16 graded RSG 2 and 6 graded RSG 3. Initially LMM proved significant differences in the concentrations of citrate (p=0,0071), ethanolamine (p= 0,0373) and glucose (p= 0,0100) between different grades of RS. However, ethanolamine and glucose showed lack of standard deviation in qq-plots, and therefore the correlation could not be confirmed. After correction for multiple testing, the p-value for citrate concentration became non-significant (p=0,1150). Discussion/conclusion The results showed that citrate concentration significantly correlated with RSG before correction for multiple testing. Citrate has previously been shown to have a negative correlation with tumor aggressiveness and GS, but these factors were adjusted for in our model. Hence the RSG can be considered to be an independent predictor of citrate concentration. This strengthens the impression of epithelial-stromal interactions as an active contributor in cancer development and progression. However, because the results did not remain significant after correction for multiple testing, it is not possible to conclude anything. Whether a correction for multiple testing was necessary in this case, or if the correction may have lead ty a type II error, can be discussed. Regardless, the association between RSG and citrate concentration is interesting and needs further investigation. Both RSG and MRS have the potential of being implemented in routine diagnostics, and their significance has already been proven in other studies.
- Published
- 2015
390. Incorporating Spatial and Spectral Saturation Modules Into MR Fingerprinting.
- Author
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Trimble CG, Sørland KI, Wu CY, Riel MHCV, Bathen TF, Elschot M, and Cloos MA
- Subjects
- Humans, Male, Algorithms, Magnetic Resonance Imaging methods, Phantoms, Imaging, Artifacts, Prostate diagnostic imaging
- Abstract
In this work, we introduce spatial and chemical saturation options for artefact reduction in magnetic resonance fingerprinting (MRF) and assess their impact on T
1 and T2 mapping accuracy. An existing radial MRF pulse sequence was modified to enable spatial and chemical saturation. Phantom experiments were performed to demonstrate flow artefact reduction and evaluate the accuracy of the T1 and T2 maps. As an in vivo demonstration, MRF of the prostate was performed on an asymptomatic volunteer using saturation modules to reduce flow-related artefacts. T1 , T2 and B1 + maps obtained with and without saturation modules were compared. Application of spatial saturation in prostate MRF reduced streaking artefacts from the femoral vessels. When saturation is enabled T1 accuracy is preserved, and T2 accuracy remains acceptable up to approximately 100 ms. Chemical and spatial saturation can be incorporated into MRF sequences with limited impact on T1 accuracy. Further sequence optimisation may be needed to accurately estimate long T2 components. Spatial saturation modules have potential in prostate MRF applications as a means to reduce flow-related artefacts., (© 2025 The Author(s). NMR in Biomedicine published by John Wiley & Sons Ltd.)- Published
- 2025
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391. Added Value of [18F]PSMA-1007 PET/CT and PET/MRI in Patients With Biochemically Recurrent Prostate Cancer: Impact on Detection Rates and Clinical Management.
- Author
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Abrahamsen BS, Tandstad T, Aksnessæther BY, Bogsrud TV, Castillejo M, Hernes E, Johansen H, Keil TMI, Knudtsen IS, Langørgen S, Selnæs KM, Bathen TF, and Elschot M
- Subjects
- Humans, Male, Aged, Retrospective Studies, Middle Aged, Positron-Emission Tomography, Niacinamide analogs & derivatives, Oligopeptides chemistry, Multimodal Imaging, Radiopharmaceuticals, Prostate diagnostic imaging, Prostate-Specific Antigen, Prostatic Neoplasms diagnostic imaging, Positron Emission Tomography Computed Tomography methods, Magnetic Resonance Imaging methods, Neoplasm Recurrence, Local diagnostic imaging
- Abstract
Background: Prostate-specific membrane antigen (PSMA) positron emission tomography (PET) can change management in a large fraction of patients with biochemically recurrent prostate cancer (BCR)., Purpose: To investigate the added value of PET to MRI and CT for this patient group, and to explore whether the choice of the PET paired modality (PET/MRI vs. PET/CT) impacts detection rates and clinical management., Study Type: Retrospective., Subjects: 41 patients with BCR (median age [range]: 68 [55-78])., Field Strength/sequence: 3T, including T1-weighted gradient echo (GRE), T2-weighted turbo spin echo (TSE) and dynamic contrast-enhanced GRE sequences, diffusion-weighted echo-planar imaging, and a T1-weighted TSE spine sequence. In addition to MRI, [
18 F]PSMA-1007 PET and low-dose CT were acquired on the same day., Assessment: Images were reported using a five-point Likert scale by two teams each consisting of a radiologist and a nuclear medicine physician. The radiologist performed a reading using CT and MRI data and a joint reading between radiologist and nuclear medicine physician was performed using MRI, CT, and PET from either PET/MRI or PET/CT. Findings were presented to an oncologist to create intended treatment plans. Intrareader and interreader agreement analysis was performed., Statistical Tests: McNemar test, Cohen's κ, and intraclass correlation coefficients. A P-value <0.05 was considered significant., Results: 7 patients had positive findings on MRI and CT, 22 patients on joint reading with PET/CT, and 18 patients joint reading with PET/MRI. For overall positivity, interreader agreement was poor for MR and CT (κ = 0.36) and almost perfect with addition of PET (PET/CT κ = 0.85, PET/MRI κ = 0.85). The addition of PET from PET/CT and PET/MRI changed intended treatment in 20 and 18 patients, respectively. Between joint readings, intended treatment was different for eight patients., Data Conclusion: The addition of [18 F]PSMA-1007 PET/MRI or PET/CT to MRI and CT may increase detection rates, could reduce interreader variability, and may change intended treatment in half of patients with BCR., Level of Evidence: 3 TECHNICAL EFFICACY: Stage 3., (© 2024 The Authors. Journal of Magnetic Resonance Imaging published by Wiley Periodicals LLC on behalf of International Society for Magnetic Resonance in Medicine.)- Published
- 2025
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392. Reducing femoral flow artefacts in radial magnetic resonance fingerprinting of the prostate using region-optimised virtual coils.
- Author
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Sørland KI, Trimble CG, Wu CY, Bathen TF, Elschot M, and Cloos MA
- Subjects
- Humans, Male, Adult, Middle Aged, Signal-To-Noise Ratio, Computer Simulation, Femur diagnostic imaging, Femur blood supply, Prostate diagnostic imaging, Prostate blood supply, Artifacts, Magnetic Resonance Imaging
- Abstract
High acceleration factors in radial magnetic resonance fingerprinting (MRF) of the prostate lead to strong streak-like artefacts from flow in the femoral blood vessels, possibly concealing important anatomical information. Region-optimised virtual (ROVir) coils is a beamforming-based framework to create virtual coils that maximise signal in a region of interest while minimising signal in a region of interference. In this study, the potential of removing femoral flow streak artefacts in prostate MRF using ROVir coils is demonstrated in silico and in vivo. The ROVir framework was applied to radial MRF k-space data in an automated pipeline designed to maximise prostate signal while minimising signal from the femoral vessels. The method was tested in 15 asymptomatic volunteers at 3 T. The presence of streaks was visually assessed and measurements of whole prostate T
1 , T2 and signal-to-noise ratio (SNR) with and without streak correction were examined. In addition, a purpose-built simulation framework in which blood flow through the femoral vessels can be turned on and off was used to quantitatively evaluate ROVir's ability to suppress streaks in radial prostate MRF. In vivo it was shown that removing selected ROVir coils visibly reduces streak-like artefacts from the femoral blood flow, without increasing the reconstruction time. On average, 80% of the prostate SNR was retained. A similar reduction of streaks was also observed in silico, while the quantitative accuracy of T1 and T2 mapping was retained. In conclusion, ROVir coils efficiently suppress streaking artefacts from blood flow in radial MRF of the prostate, thereby improving the visual clarity of the images, without significant sacrifices to acquisition time, reconstruction time and accuracy of quantitative values. This is expected to help enable T1 and T2 mapping of prostate cancer in clinically viable times, aiding differentiation between prostate cancer from noncancer and healthy prostate tissue., (© 2024 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd.)- Published
- 2024
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393. Repeat Prostate-specific Antigen Testing Improves Risk-based Selection of Men for Prostate Biopsy After Magnetic Resonance Imaging.
- Author
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Davik P, Elschot M, Frost Bathen T, and Bertilsson H
- Abstract
Background and Objective: The aim of our study was to investigate whether repeat prostate-specific antigen (PSA) testing as currently recommended improves risk stratification for men undergoing magnetic resonance imaging (MRI) and targeted biopsy for suspected prostate cancer (PCa)., Methods: Consecutive men undergoing MRI and prostate biopsy who had at least two PSA tests before prostate biopsy were retrospectively registered and assigned to a development cohort ( n = 427) or a validation ( n = 174) cohort. Change in PSA level was assessed as a predictor of clinically significant PCa (csPCa; Gleason score ≥3 + 4, grade group ≥2) by multivariable logistic regression analysis. We developed a multivariable prediction model (MRI-RC) and a dichotomous biopsy decision strategy incorporating the PSA change. The performance of the MRI-RC model and dichotomous decision strategy was assessed in the validation cohort and compared to prediction models and decision strategies not including PSA change in terms of discriminative ability and decision curve analysis., Results: Men who had a decrease on repeat PSA testing had significantly lower risk of csPCa than men without a decrease (odds ratio [OR] 0.3, 95% confidence interval [CI] 0.16-0.54; p < 0.001). Men with an increased repeat PSA had a significantly higher risk of csPCa than men without an increase (OR 2.97, 95% CI 1.62-5.45; p < 0.001). Risk stratification using both the MRI-RC model and the dichotomous decision strategy was improved by incorporating change in PSA as a parameter., Conclusions and Clinical Implications: Repeat PSA testing gives predictive information regarding men undergoing MRI and targeted prostate biopsy. Inclusion of PSA change as a parameter in an MRI-RC model and a dichotomous biopsy decision strategy improves their predictive performance and clinical utility without requiring additional investigations., Patient Summary: For men with a suspicion of prostate cancer, repeat PSA (prostate-specific antigen) testing after an MRI (magnetic resonance imaging) scan can help in identifying patients who can safely avoid prostate biopsy., (© 2024 The Author(s).)
- Published
- 2024
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394. Comprehensive multi-omics analysis of breast cancer reveals distinct long-term prognostic subtypes.
- Author
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Sharma A, Debik J, Naume B, Ohnstad HO, Bathen TF, and Giskeødegård GF
- Abstract
Breast cancer (BC) is a leading cause of cancer-related death worldwide. The diverse nature and heterogeneous biology of BC pose challenges for survival prediction, as patients with similar diagnoses often respond differently to treatment. Clinically relevant BC intrinsic subtypes have been established through gene expression profiling and are implemented in the clinic. While these intrinsic subtypes show a significant association with clinical outcomes, their long-term survival prediction beyond 5 years often deviates from expected clinical outcomes. This study aimed to identify naturally occurring long-term prognostic subgroups of BC based on an integrated multi-omics analysis. This study incorporates a clinical cohort of 335 untreated BC patients from the Oslo2 study with long-term follow-up (>12 years). Multi-Omics Factor Analysis (MOFA+) was employed to integrate transcriptomic, proteomic, and metabolomic data obtained from the tumor tissues. Our analysis revealed three prominent multi-omics clusters of BC patients with significantly different long-term prognoses (p = 0.005). The multi-omics clusters were validated in two independent large cohorts, METABRIC and TCGA. Importantly, a lack of prognostic association to long-term follow-up above 12 years in the previously established intrinsic subtypes was shown for these cohorts. Through a systems-biology approach, we identified varying enrichment levels of cell-cycle and immune-related pathways among the prognostic clusters. Integrated multi-omics analysis of BC revealed three distinct clusters with unique clinical and biological characteristics. Notably, these multi-omics clusters displayed robust associations with long-term survival, outperforming the established intrinsic subtypes., (© 2024. The Author(s).)
- Published
- 2024
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395. Quantification of multiple steroid hormones in serum and human breast cancer tissue by liquid chromatography-tandem mass spectrometry analysis.
- Author
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Wang F, Eikeland E, Reidunsdatter RJ, Hagen L, Engstrøm MJ, Geisler J, Haanpää M, Hämäläinen E, Giskeødegård GF, and Bathen TF
- Abstract
Introduction: Systemic and local steroid hormone levels may function as novel prognostic and predictive biomarkers in breast cancer patients. We aimed at developing a novel liquid chromatography-tandem mass spectrometry (LC-MS/MS) method for the simultaneous measurement of multiple, biologically pivotal steroid hormones in human serum and breast cancer tissue., Methods: The quantitative method consisted of liquid-liquid extraction, Sephadex LH-20 chromatography for tissue extracts, and analysis of steroid hormones by liquid-chromatography-tandem mass spectrometry. We analyzed serum and tissue steroid hormone levels in 16 and 40 breast cancer patients, respectively, and assessed their correlations with clinical parameters., Results: The method included quantification of nine steroid hormones in serum [including cortisol, cortisone, corticosterone, estrone (E1), 17β-estradiol (E2), 17α-hydroxyprogesterone, androstenedione (A4), testosterone and progesterone) and six (including cortisone, corticosterone, E1, E2, A4, and testosterone) in cancer tissue. The lower limits of quantification were between 0.003-10 ng/ml for serum (250 µl) and 0.038-125 pg/mg for tissue (20 mg), respectively. Accuracy was between 98%-126%, intra-assay coefficient of variations (CV) was below 15%, and inter-assay CV were below 11%. The analytical recoveries for tissue were between 76%-110%. Tissue levels of E1 were positively correlated with tissue E2 levels (p<0.001), and with serum levels of E1, E2 and A4 (p<0.01). Tissue E2 levels were positively associated with serum E1 levels (p=0.02), but not with serum E2 levels (p=0.12). The levels of tissue E2 and ratios of E1 to A4 levels (an index for aromatase activity) were significantly higher in patients with larger tumors (p=0.03 and p=0.02, respectively)., Conclusions: The method was convenient and suitable for a specific and accurate profiling of clinically important steroid hormones in serum. However, the sensitivity of the profile method in steroid analysis in tissue samples is limited, but it can be used for the analysis of steroids in breast cancer tissues if the size of the sample or its steroid content is sufficient., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Wang, Eikeland, Reidunsdatter, Hagen, Engstrøm, Geisler, Haanpää, Hämäläinen, Giskeødegård and Bathen.)
- Published
- 2024
- Full Text
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396. Profiling of serum metabolome of breast cancer: multi-cancer features discriminate between healthy women and patients with breast cancer.
- Author
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Mrowiec K, Debik J, Jelonek K, Kurczyk A, Ponge L, Wilk A, Krzempek M, Giskeødegård GF, Bathen TF, and Widłak P
- Abstract
Introduction: The progression of solid cancers is manifested at the systemic level as molecular changes in the metabolome of body fluids, an emerging source of cancer biomarkers., Methods: We analyzed quantitatively the serum metabolite profile using high-resolution mass spectrometry. Metabolic profiles were compared between breast cancer patients (n=112) and two groups of healthy women (from Poland and Norway; n=95 and n=112, respectively) with similar age distributions., Results: Despite differences between both cohorts of controls, a set of 43 metabolites and lipids uniformly discriminated against breast cancer patients and healthy women. Moreover, smaller groups of female patients with other types of solid cancers (colorectal, head and neck, and lung cancers) were analyzed, which revealed a set of 42 metabolites and lipids that uniformly differentiated all three cancer types from both cohorts of healthy women. A common part of both sets, which could be called a multi-cancer signature, contained 23 compounds, which included reduced levels of a few amino acids (alanine, aspartate, glutamine, histidine, phenylalanine, and leucine/isoleucine), lysophosphatidylcholines (exemplified by LPC(18:0)), and diglycerides. Interestingly, a reduced concentration of the most abundant cholesteryl ester (CE(18:2)) typical for other cancers was the least significant in the serum of breast cancer patients. Components present in a multi-cancer signature enabled the establishment of a well-performing breast cancer classifier, which predicted cancer with a very high precision in independent groups of women (AUC>0.95)., Discussion: In conclusion, metabolites critical for discriminating breast cancer patients from controls included components of hypothetical multi-cancer signature, which indicated wider potential applicability of a general serum metabolome cancer biomarker., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Mrowiec, Debik, Jelonek, Kurczyk, Ponge, Wilk, Krzempek, Giskeødegård, Bathen and Widłak.)
- Published
- 2024
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397. A multivariate curve resolution analysis of multicenter proton spectroscopic imaging of the prostate for cancer localization and assessment of aggressiveness.
- Author
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Stamatelatou A, Bertinetto CG, Jansen JJ, Postma G, Selnaes KM, Bathen TF, Heerschap A, and Scheenen TWJ
- Subjects
- Male, Humans, Protons, Magnetic Resonance Imaging, Magnetic Resonance Spectroscopy methods, Least-Squares Analysis, Prostate diagnostic imaging, Prostate pathology, Prostatic Neoplasms diagnostic imaging
- Abstract
In this study, we investigated the potential of the multivariate curve resolution alternating least squares (MCR-ALS) algorithm for analyzing three-dimensional (3D)
1 H-MRSI data of the prostate in prostate cancer (PCa) patients. MCR-ALS generates relative intensities of components representing spectral profiles derived from a large training set of patients, providing an interpretable model. Our objectives were to classify magnetic resonance (MR) spectra, differentiating tumor lesions from benign tissue, and to assess PCa aggressiveness. We included multicenter 3D1 H-MRSI data from 106 PCa patients across eight centers. The patient cohort was divided into a training set (N = 63) and an independent test set (N = 43). Singular value decomposition determined that MR spectra were optimally represented by five components. The profiles of these components were extracted from the training set by MCR-ALS and assigned to specific tissue types. Using these components, MCR-ALS was applied to the test set for a quantitative analysis to discriminate tumor lesions from benign tissue and to assess tumor aggressiveness. Relative intensity maps of the components were reconstructed and compared with histopathology reports. The quantitative analysis demonstrated a significant separation between tumor and benign voxels (t-test, p < 0.001). This result was achieved including voxels with low-quality MR spectra. A receiver operating characteristic analysis of the relative intensity of the tumor component revealed that low- and high-risk tumor lesions could be distinguished with an area under the curve of 0.88. Maps of this component properly identified the extent of tumor lesions. Our study demonstrated that MCR-ALS analysis of1 H-MRSI of the prostate can reliably identify tumor lesions and assess their aggressiveness. It handled multicenter data with minimal preprocessing and without using prior knowledge or quality control. These findings indicate that MCR-ALS can serve as an automated tool to assess the presence, extent, and aggressiveness of tumor lesions in the prostate, enhancing diagnostic capabilities and treatment planning of PCa patients., (© 2023 The Authors. NMR in Biomedicine published by John Wiley & Sons Ltd.)- Published
- 2024
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398. The impact of pre-processing and disease characteristics on reproducibility of T2-weighted MRI radiomics features.
- Author
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Dewi DEO, Sunoqrot MRS, Nketiah GA, Sandsmark E, Giskeødegård GF, Langørgen S, Bertilsson H, Elschot M, and Bathen TF
- Subjects
- Male, Humans, Reproducibility of Results, Prostate diagnostic imaging, Retrospective Studies, Image Processing, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
Purpose: To evaluate the reproducibility of radiomics features derived via different pre-processing settings from paired T2-weighted imaging (T2WI) prostate lesions acquired within a short interval, to select the setting that yields the highest number of reproducible features, and to evaluate the impact of disease characteristics (i.e., clinical variables) on features reproducibility., Materials and Methods: A dataset of 50 patients imaged using T2WI at 2 consecutive examinations was used. The dataset was pre-processed using 48 different settings. A total of 107 radiomics features were extracted from manual delineations of 74 lesions. The inter-scan reproducibility of each feature was measured using the intra-class correlation coefficient (ICC), with ICC values > 0.75 considered good. Statistical differences were assessed using Mann-Whitney U and Kruskal-Wallis tests., Results: The pre-processing parameters strongly influenced the reproducibility of radiomics features of T2WI prostate lesions. The setting that yielded the highest number of features (25 features) with high reproducibility was the relative discretization with a fixed bin number of 64, no signal intensity normalization, and outlier filtering by excluding outliers. Disease characteristics did not significantly impact the reproducibility of radiomics features., Conclusion: The reproducibility of T2WI radiomics features was significantly influenced by pre-processing parameters, but not by disease characteristics. The selected pre-processing setting yielded 25 reproducible features., (© 2023. The Author(s).)
- Published
- 2023
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399. Restriction spectrum imaging with elastic image registration for automated evaluation of response to neoadjuvant therapy in breast cancer.
- Author
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Andreassen MMS, Loubrie S, Tong MW, Fang L, Seibert TM, Wallace AM, Zare S, Ojeda-Fournier H, Kuperman J, Hahn M, Jerome NP, Bathen TF, Rodríguez-Soto AE, Dale AM, and Rakow-Penner R
- Abstract
Purpose: Dynamic contrast-enhanced MRI (DCE) and apparent diffusion coefficient (ADC) are currently used to evaluate treatment response of breast cancer. The purpose of the current study was to evaluate the three-component Restriction Spectrum Imaging model (RSI
3C ), a recent diffusion-weighted MRI (DWI)-based tumor classification method, combined with elastic image registration, to automatically monitor breast tumor size throughout neoadjuvant therapy., Experimental Design: Breast cancer patients ( n= 27) underwent multi-parametric 3T MRI at four time points during treatment. Elastically-registered DWI images were used to generate an automatic RSI3C response classifier, assessed against manual DCE tumor size measurements and mean ADC values. Predictions of therapy response during treatment and residual tumor post-treatment were assessed using non-pathological complete response (non-pCR) as an endpoint., Results: Ten patients experienced pCR. Prediction of non-pCR using ROC AUC (95% CI) for change in measured tumor size from pre-treatment time point to early-treatment time point was 0.65 (0.38-0.92) for the RSI3C classifier, 0.64 (0.36-0.91) for DCE, and 0.45 (0.16-0.75) for change in mean ADC. Sensitivity for detection of residual disease post-treatment was 0.71 (0.44-0.90) for the RSI3C classifier, compared to 0.88 (0.64-0.99) for DCE and 0.76 (0.50-0.93) for ADC. Specificity was 0.90 (0.56-1.00) for the RSI3C classifier, 0.70 (0.35-0.93) for DCE, and 0.50 (0.19-0.81) for ADC., Conclusion: The automatic RSI3C classifier with elastic image registration suggested prediction of response to treatment after only three weeks, and showed performance comparable to DCE for assessment of residual tumor post-therapy. RSI3C may guide clinical decision-making and enable tailored treatment regimens and cost-efficient evaluation of neoadjuvant therapy of breast cancer., Competing Interests: Author AMD is employed and holds equity in CorTechs Labs, Inc., and serves on its Scientific Advisory Board. He is a member of the Scientific Advisory Board of Human Longevity, Inc. Author RRP is a consultant of Human Longevity, Inc. She has equity interest in CorTechs Labs, Inc. and is on their Scientific Advisory Board, Inc. She has equity interest in Curemetrix and is on the Scientific Advisory Board of Imagine Scientific. Author TMS reports honoraria from Varian Medical Systems and WebMD; he has an equity interest in CorTechs Labs, Inc. and serves on its Scientific Advisory Board. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Andreassen, Loubrie, Tong, Fang, Seibert, Wallace, Zare, Ojeda-Fournier, Kuperman, Hahn, Jerome, Bathen, Rodríguez-Soto, Dale and Rakow-Penner.)- Published
- 2023
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400. Pelvic PET/MR attenuation correction in the image space using deep learning.
- Author
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Abrahamsen BS, Knudtsen IS, Eikenes L, Bathen TF, and Elschot M
- Abstract
Introduction: The five-class Dixon-based PET/MR attenuation correction (AC) model, which adds bone information to the four-class model by registering major bones from a bone atlas, has been shown to be error-prone. In this study, we introduce a novel method of accounting for bone in pelvic PET/MR AC by directly predicting the errors in the PET image space caused by the lack of bone in four-class Dixon-based attenuation correction., Methods: A convolutional neural network was trained to predict the four-class AC error map relative to CT-based attenuation correction. Dixon MR images and the four-class attenuation correction µ -map were used as input to the models. CT and PET/MR examinations for 22 patients ([
18 F]FDG) were used for training and validation, and 17 patients were used for testing (6 [18 F]PSMA-1007 and 11 [68 Ga]Ga-PSMA-11). A quantitative analysis of PSMA uptake using voxel- and lesion-based error metrics was used to assess performance., Results: In the voxel-based analysis, the proposed model reduced the median root mean squared percentage error from 12.1% and 8.6% for the four- and five-class Dixon-based AC methods, respectively, to 6.2%. The median absolute percentage error in the maximum standardized uptake value (SUVmax ) in bone lesions improved from 20.0% and 7.0% for four- and five-class Dixon-based AC methods to 3.8%., Conclusion: The proposed method reduces the voxel-based error and SUVmax errors in bone lesions when compared to the four- and five-class Dixon-based AC models., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Abrahamsen, Knudtsen, Eikenes, Bathen and Elschot.)- Published
- 2023
- Full Text
- View/download PDF
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