230 results on '"Anil Kumar, V."'
Search Results
202. The Applications of Compressive Sensing to Radio Astronomy
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Li, Feng, Cornwell, Tim J., De hoog, Frank, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
- Published
- 2010
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203. Research on Enhanced Spectrum Efficiency for BWA Networks
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Wang, Xu-hui, Zhao, Cheng-lin, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
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- 2010
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204. Energy Efficient Water Filling Ultra Wideband Waveform Shaping Based on Radius Basis Function Neural Networks
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Zou, Weixia, Li, Bin, Zhou, Zheng, Wang, Shubin, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
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- 2010
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205. Fuzzy C-Means Clustering Based Robust and Blind Noncoherent Receivers for Underwater Sensor Networks
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Li, Bin, Zhou, Zheng, Zou, Weixia, Wang, Shubin, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
- Published
- 2010
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206. Energy-Efficient Algorithm for the Target Q-coverage Problem in Wireless Sensor Networks
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Liu, Hui, Chen, Wenping, Ma, Huan, Li, Deying, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
- Published
- 2010
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207. Approaching the Optimal Schedule for Data Aggregation in Wireless Sensor Networks
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Wang, Pei, He, Yuan, Huang, Liusheng, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
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- 2010
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208. Arbitrary Obstacles Constrained Full Coverage in Wireless Sensor Networks
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Tan, Haisheng, Wang, Yuexuan, Hao, Xiaohong, Hua, Qiang-Sheng, Lau, Francis C. M., Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
- Published
- 2010
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209. Heuristic Algorithms for Constructing Connected Dominating Sets with Minimum Size and Bounded Diameter in Wireless Networks
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Yu, Jiguo, Wang, Nannan, Wang, Guanghui, Hutchison, David, Series editor, Kanade, Takeo, Series editor, Kittler, Josef, Series editor, Kleinberg, Jon M., Series editor, Mattern, Friedemann, Series editor, Mitchell, John C., Series editor, Naor, Moni, Series editor, Nierstrasz, Oscar, Series editor, Pandu Rangan, C., Series editor, Steffen, Bernhard, Series editor, Sudan, Madhu, Series editor, Terzopoulos, Demetri, Series editor, Tygar, Doug, Series editor, Vardi, Moshe Y., Series editor, Weikum, Gerhard, Series editor, Pandurangan, Gopal, editor, Anil Kumar, V. S., editor, Ming, Gu, editor, Liu, Yunhao, editor, and Li, Yingshu, editor
- Published
- 2010
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210. Seasonal variability in chemical composition and source apportionment of sub-micron aerosol over a high altitude site in Western Ghats, India.
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Mukherjee, Subrata, Singla, Vyoma, Pandithurai, Govindan, Safai, P.D., Meena, G.S., Dani, K.K., and Anil Kumar, V.
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AEROSOLS , *ALTITUDES , *COLLOIDS , *GEOSPATIAL data , *SULFATES - Abstract
This manuscript reports the seasonal variation of chemically speciated sub-micron aerosol particles (diameter < 1 μm). An Aerosol Chemical Speciation Monitor (ACSM) was used to measure the mass concentration of non-refractory particulate matter (NR-PM 1 ) at a high-altitude site in the Western Ghats, India from March 2016 to February 2017. The mass concentration of NR-PM 1 averaged at 7.5 ± 6.5 μgm –3 , with major contributions from organics (59%) and sulfates (23%). Positive matrix factorization (PMF) was applied on the measured mass spectra of organic aerosol (OA) to derive the sources distinctive of each season (Summer, Monsoon, Post-Monsoon and Winter). The four OA factors (two primary OA and two oxygenated OA) resolved during summer, post-monsoon and winter season. However, only one oxygenated factor resolved during monsoon and contributed only 20% to the total OA. The factors associated with primary emissions dominated during the monsoon, whereas factors related to secondary formation dominated in other three seasons. During summer, an isoprene derived SOA – IEPOX-OA (isoprene-epoxydiol OA) contributed ∼17% to the total OA. Cluster and concentration weighted trajectory (CWT) analyses were performed to identify the possible source regions of NR-PM 1 mass concentration observed at the receptor site. The analysis identifies Central India as the potential source region of transported aerosol during post-monsoon and winter season. Our study suggests that contributions from both local sources and regional transport are important in governing mass concentration of PM 1 over Mahabaleshwar. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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211. Preparation, characterization and efficacy of lysostaphin-chitosan gel against Staphylococcus aureus.
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Nithya, Sai, Nimal, T.R., Baranwal, Gaurav, Suresh, Maneesha K., C.P., Anju, Anil Kumar, V., Gopi Mohan, C., Jayakumar, R., and Biswas, Raja
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LYSOSTAPHIN , *CHITOSAN , *STAPHYLOCOCCUS aureus , *HYDROGELS , *CELL survival , *POLYSACCHARIDES - Abstract
L y s os t aphin (LST) is a bacteriocin that cleaves within the pentaglycine cross bridge of Staphylococcus aureus peptidoglycan. Previous studies have reported the high efficiency of LST even against multi drug resistant S. aureus including methicillin resistant S. aureus (MRSA). In this study, we have developed a new chitosan based hydrogel formulation of LST to exploit its anti-staphylococcal activity. The atomic interactions of LST with chitosan were studied by molecular docking studies. The rheology and the antibacterial properties of the developed LSTC gel were evaluated. The developed LST containing chitosan hydrogel (LSTC gel) was flexible, flows smoothly and remains stable at physiological temperature. The in vitro studies by agar well diffusion and ex vivo studies in porcine skin model exhibited a reduction in S. aureus survival by ∼3 Log 10 CFU/mL in the presence of LSTC gel. The cytocompatibility of the gel was tested in vitro using macrophage RAW 264.7 cell line and in vivo in Drosophila melanogaster . A gradual disruption of S. aureus biofilms with the increase of LST concentrations in the LSTC gel was observed which was confirmed by SEM analysis. We conclude that LSTC gel could be highly effectual and advantageous over antibiotics in treating staphylococcal-topical and biofilm infections. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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212. Comparative efficacy of chloramphenicol loaded chondroitin sulfate and dextran sulfate nanoparticles to treat intracellular Salmonella infections.
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Kiruthika, V., Maya, S., Suresh, Maneesha K., Anil Kumar, V., Jayakumar, R., and Biswas, Raja
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CHLORAMPHENICOL , *ANTIBACTERIAL agents , *DEXTRAN sulfate , *NANOPARTICLES , *CARBOHYDRATES - Abstract
Salmonella Paratyphi A is a food-borne Gram-negative pathogen and a major public health challenge in the developing world. Upon reaching the intestine, S . Paratyphi A penetrates the intestinal epithelial barrier; and infects phagocytes such as macrophages and dendritic cells. S . Paratyphi A surviving within macrophages is protected from the lethal action of antibiotics due to their poor penetration into the intracellular compartments. Hence we have developed chloramphenicol loaded chondroitin sulfate (CS-Cm Nps) and dextran sulfate (DS-Cm Nps) nanoparticles through ionotropic-gelation method for the intracellular delivery of chloramphenicol. The size of these nanoparticles ranged between 100 and 200 nm in diameter. The encapsulation efficiency of both the nanoparticles was found to be around 65%. Both the nanoparticles are found to be non-hemolytic and non-toxic to fibroblast and epithelial cells. The prepared nanoparticles exhibited sustained release of the drug of up to 40% at pH 5 and 20–25% at pH 7.0 after 168 h. The anti-microbial activities of both nanoparticles were tested under in vitro and ex vivo conditions. The delivery of DS-Cm Nps into the intracellular compartments of the macrophages was 4 fold more compared to the CS-Cm Nps which lead to the enhanced intracellular antimicrobial activity of Ds-Cm Nps. Enhanced anti-microbial activity of Ds-Cm Nps was further confirmed in an ex vivo chicken intestine infection model. Our results showed that Cm loaded DS Nps can be used to treat intracellular Salmonella infections. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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213. Aerosol optical properties and their relationship with meteorological parameters during wintertime in Delhi, India.
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Tiwari, S., Pandithurai, G., Attri, S.D., Srivastava, A.K., Soni, V.K., Bisht, D.S., Anil Kumar, V., and Srivastava, Manoj K.
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OPTICAL properties of atmospheric aerosols , *METEOROLOGY , *WINTER , *OPTICAL depth (Astrophysics) , *PARAMETER estimation , *COLUMNAR structure (Metallurgy) - Abstract
In situ and columnar measurements of aerosol optical properties (AOPs) [Aerosol optical depth (AOD), Angstrom Exponent (AE), Aerosol scattering (σ scat ) and absorption (σ abs ) coefficients and single scattering albedo (SSA)] along with soot particles (Black carbon: BC) and fine particles (PM 2.5 : d ≤ 2.5) were continuously measured at an urban site in Delhi, India during winter period (December 2011 to March 2012). Average values of AOD, σ scat , σ abs, and SSA at 500 nm; and AE for the observation period were found to be 0.95 ± 0.32, 1027.36 ± 797.1 Mm − 1 , 85.95 ± 73.2 Mm − 1 and 0.93 ± 0.03; and 0.94 ± 0.19, respectively. Higher values of σ scat and σ abs were occurred in the month of December (1857 and 148 Mm − 1 ) while relatively lower values of σ scat (585 Mm − 1 ) and σ abs (44 Mm − 1 ) were occurred in March and February respectively. SSA, however, was higher during January (0.94) and lower in March (0.89). The mass concentration of PM 2.5 and BC were 195.34 ± 157.99 and 10.11 ± 8.83 μg m − 3 respectively during study period. Bimodal distributions were observed in σ scat and σ abs coefficients during 0800 and 0900 h LT (traffic rush hours) and at 2200 and 2300 h LT (low boundary layer conditions) with lower values during daytime between 1500 and 1700 h LT, respectively. The σ scat peak in morning may be attributed to large emissions of aerosol in the traffic rush hours and production of secondary aerosols with increasing solar radiation and temperature. During study period, the σ scat (mean) coefficient was 13% lower during daytime as compared to nighttime. An interesting feature was seen in monthly analysis of σ scat in between day and nighttime which was 18% and 22% higher in December and January in nighttime however ~ 4% lower during February and March; it is due to effect of local meteorology. The impact of meteorological parameters such as wind speed (WS), wind direction (WD), visibility (VIS) and mixed layer depths (MLDs) on AOPs along with fine and soot particles were studied. A clear negative significant correlation between atmospheric visibility with σ scat (− 0.64); σ abs (− 0.57) and PM 2.5 (− 0.56) were observed. During foggy days (VIS ≤ 1000 m), the AOPs, fine and soot particles were substantially (~ 1.8 times) higher as compared to clean days, however, it was ~ 2.3 times higher during dense foggy days (VIS ≤ 500 m). Similarly higher (~ 2 times) AOPs and aerosol concentrations were also seen below 200 m MLDs. In addition to this, ~ 4 times higher AOPs and aerosol mass concentrations were observed when WS was below 1 m/s. In view of the above results and regression analysis, we can say that the meteorological parameters play a crucial role in enhancement of aerosols at ground level during winter period over Delhi. [ABSTRACT FROM AUTHOR]
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- 2015
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214. On strategy improvement algorithms for simple stochastic games
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Anil Kumar, V.
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- 2011
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215. Innate immune recognition of microbial cell wall components and microbial strategies to evade such recognitions
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Sukhithasri, V., Nisha, N., Biswas, Lalitha, Anil Kumar, V., and Biswas, Raja
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NATURAL immunity , *IMMUNE recognition , *OLIGOMERIZATION , *PEPTIDOGLYCANS , *TOLL-like receptors , *CELLULAR signal transduction , *PEPTIDE antibiotics , *LECTINS - Abstract
Abstract: The innate immune system constitutes the first line of defence against invading microbes. The basis of this defence resides in the recognition of defined structural motifs of the microbes called “Microbial associated molecular patterns” that are absent in the host. Cell wall, the outer layer of both bacterial and fungal cells, a unique structure that is absent in the host and is recognized by the germ line encoded host receptors. Nucleotide oligomerization domain proteins, peptidoglycan recognition proteins and C-type lectins are host receptors that are involved in the recognition of bacterial cell wall (usually called peptidoglycan), whereas fungal cell wall components (N- and O-linked mannans, β-glucans etc.) are recognized by host receptors like C-type lectins (Dectin-1, Dectin-2, mannose receptor, DC-SIGN), Toll like receptors-2 and -4 (TLR-2 and TLR-4). These recognitions lead to activation of a variety of host signaling cascades and ultimate production of anti-microbial compounds including phospholipase A2, antimicrobial peptides, lysozyme, reactive oxygen and nitrogen species. These molecules act in cohort against the invading microbes to eradicate infections. Additionally pathogen recognition leads to the production of cytokines, which further activate the adaptive immune system. Both pathogenic and commensal bacteria and fungus use numerous strategies to subvert the host defence. These strategies include bacterial peptidoglycan glycan backbone modifications by O-acetylation, N-deacetylation, N-glycolylation and stem peptide modifications by amidation of meso-Diaminopimelic acid; fungal cell wall modifications by shielding the β-glucan layer with mannoproteins and α-1,3 glucan. This review focuses on the recent advances in understanding the role of bacterial and fungal cell wall in their innate immune recognition and evasion strategies. [Copyright &y& Elsevier]
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- 2013
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216. Premature chromosome condensation assay to study influence of high-level natural radiation on the initial DNA double strand break repair in human G0 lymphocytes.
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Vivek Kumar, P.R., Karuppasamy, C.V., Ramachandran, E.N., Anil Kumar, V., Jaikrishan, G., and Das, Birajalaxmi
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DOUBLE-strand DNA breaks , *BACKGROUND radiation , *HUMAN chromosomes , *CHROMOSOMES , *SINGLE-stranded DNA , *IONIZING radiation , *DNA repair - Abstract
• Influence of chronic low dose radiation on initial DNA DSB repair was studied. • Blood lymphocyte samples of individuals from H& NLNRA of Kerala, India were used. • A modified cell fusion-based PCC assay quantitated repair at chromosome level. • Mean initial repair ratio (IRR) was significantly higher in individuals from HLNRA. • A probable influence of chronic low dose radiation on DNA DSB repair was observed. The inherent capacity of individuals to efficiently repair ionizing radiation induced DNA double strand breaks (DSBs) may be inherited, however, it is influenced by several epigenetic and environmental factors. A pilot study tested whether chronic low dose natural radiation exposure influences the rejoining of initial DNA DSBs induced by a 2 Gy γ-irradiation in 22 individuals from high (>1.5 mGy/year) and normal (≤1.5 mGy/year) level natural radiation areas (H&NLNRA) of Kerala. Rejoining of DSBs (during 1 h at 37 °C, immediately after irradiation) was evaluated at the chromosome level in the presence and absence of wortmannin (a potent inhibitor of DSB repair in normal human cells) using a cell fusion-induced premature chromosome condensation (PCC) assay. The PCC assay quantitates DSBs in the form of excess chromosome fragments in human G 0 lymphocytes without the requirement for cell division. A quantitative difference was observed in the early rejoining of DNA DSBs between individuals from HLNRA and NLNRA, with HLNRA individuals showing a higher (P = 0.05) mean initial repair ratio. The results indicate an influence of chronic low dose natural radiation on initial DNA DSB repair in inhabitants of HLNRA of the Kerala coast. [ABSTRACT FROM AUTHOR]
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- 2020
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217. Optimizing speed breeding and seed/pod chip based genotyping techniques in pigeonpea: A way forward for high throughput line development.
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Gangashetty PI, Belliappa SH, Bomma N, Kanuganahalli V, Sajja SB, Choudhary S, Gaviyappanavar R, Bomireddy D, Anil Kumar V, Pranati J, Sharma M, and Pandey MK
- Abstract
Background: The challenge of pigeonpea breeding lies in its photosensitivity and seasonal specificity. This poses a problem to the breeder, as it restricts to single generation advancement in a year. Currently, the cross to cultivar gap is twelve to thirteen years resulting in a limited number of varietal releases over the past six decades. Shortening the breeding cycle was need of the hour, unlikely achieved by conventional breeding. To overcome these hindrances speed breeding was a necessary leap. An experiment was planned to optimize the speed breeding coupled with single seed descent and seed or pod chip-based genotyping to shorten the breeding cycle in pigeonpea at ICRISAT, Hyderabad. Monitored photoperiod, light wavelength, temperature and crop management regime were the indicators attributing to the success of speed breeding., Result: A photoperiod of 13 h: 8 h: 13 h at vegetative: flowering and pod filling stages is ideal for shortening the breeding cycle. Broad spectrum light (5700 K LED) hastened early vegetative growth and pod formation. Whereas far-red (735 nm) light favoured early flowering. A significant difference between the photoperiods, genotypes as well as photoperiod x genotype interaction for both days to flowering and plant height was noted., Conclusion: The optimized protocol serves as a road map for rapid generation advancement in pigeonpea. Deploying this protocol, it is possible to advance 2-4 generations per year. The breeding cycle can be reduced to 2-4 years which otherwise takes 7 years under conventional breeding. Single Seed Descent and seed or pod chip-based genotyping for early generation marker assisted selection, strengthened the precision of this technique aiding in high throughput line development., (© 2024. The Author(s).)
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- 2024
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218. Characterization of plastic debris from surface waters of the eastern Arabian Sea-Indian Ocean.
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Naidu SA, Mawii L, Ranga Rao V, Anitha G, Mishra P, Narayanaswamy BE, Anil Kumar V, Ramana Murthy MV, and Gvm G
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- Ecosystem, Environmental Monitoring, Indian Ocean, Plastics, Water Pollutants, Chemical analysis
- Abstract
The quantity of floating plastic debris (FPD) is continuously being increased in the oceans. To assess their size, structure, and composition along the eastern Arabian Sea (EAS), FPD samples were collected by using a surface plankton net. The microplastic size fraction (0.5-5 mm) was the most prevalent accounting for >50% of the total, followed by mesoplastics (5-25 mm; ~40%) and macroplastics (>25 mm; ~10%). The collected FPDs were categorized into five different types and eight colours. Attenuated Total Reflectance-Fourier Transform Infrared Spectrometry (ATR-FTIR) analysis of the plastics revealed that polypropylene, polyethylene, and nylon were the most dominant polymers, and these comprised mostly of fibre/fishing line. The abundance of FPD in the EAS (0.013 ± 0.012 no.s/m
3 ) was found to be very low compared to elsewhere. The prevalent microplastics presence in the oceans might have occurred mainly by the degradation of larger items. It increases bioavailability, and hence, is a risk to marine ecosystems., (Copyright © 2021. Published by Elsevier Ltd.)- Published
- 2021
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219. Current Status and Future Prospects of Next-Generation Data Management and Analytical Decision Support Tools for Enhancing Genetic Gains in Crops.
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Rathore A, Singh VK, Pandey SK, Rao CS, Thakur V, Pandey MK, Anil Kumar V, and Das RR
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- Agriculture trends, Phenotype, Plant Breeding, Agriculture methods, Crops, Agricultural genetics, Data Analysis, Decision Making, Computer-Assisted, Genomics trends
- Abstract
Agricultural disciplines are becoming data intensive and the agricultural research data generation technologies are becoming sophisticated and high throughput. On the one hand, high-throughput genotyping is generating petabytes of data; on the other hand, high-throughput phenotyping platforms are also generating data of similar magnitude. Under modern integrated crop breeding, scientists are working together by integrating genomic and phenomic data sets of huge data volumes on a routine basis. To manage such huge research data sets and use them appropriately in decision making, Data Management Analysis & Decision Support Tools (DMASTs) are a prerequisite. DMASTs are required for a range of operations including generating the correct breeding experiments, maintaining pedigrees, managing phenotypic data, storing and retrieving high-throughput genotypic data, performing analytics, including trial analysis, spatial adjustments, identifications of MTAs, predicting Genomic Breeding Values (GEBVs), and various selection indices. DMASTs are also a prerequisite for understanding trait dynamics, gene action, interactions, biology, GxE, and various other factors contributing to crop improvement programs by integrating data generated from various science streams. These tools have simplified scientists' lives and empowered them in terms of data storage, data retrieval, data analytics, data visualization, and sharing with other researchers and collaborators. This chapter focuses on availability, uses, and gaps in present-day DMASTs. Graphical Abstract.
- Published
- 2018
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220. Mycobacterium tuberculosis virulence-regulator PhoP interacts with alternative sigma factor SigE during acid-stress response.
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Bansal R, Anil Kumar V, Sevalkar RR, Singh PR, and Sarkar D
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- Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial, Hydrogen-Ion Concentration, Mycobacterium tuberculosis metabolism, Oleic Acid pharmacology, Sigma Factor metabolism, Stress, Physiological genetics, Bacterial Proteins genetics, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis pathogenicity, Sigma Factor genetics
- Abstract
The ability to sense acid stress and mount an appropriate adaptive response by Mycobacterium tuberculosis, which adapts a long-term residence in the macrophage phagosome, remains one of the critical features that defines mycobacterial physiology and its intracellular location. To understand the mechanistic basis of adaptation of the intracellular pathogen, we studied global regulation of M. tuberculosis gene expression in response to acid stress. Although recent studies indicate a role for the virulence-associated phoP locus in pH-driven adaptation, in this study, we discovered a strikingly novel regulatory mechanism, which controls acid-stress homeostasis. Using mycobacterial protein fragment complementation and in vitro interaction analyses, we demonstrate that PhoP interacts with acid-inducible extracytoplasmic SigE (one of the 13 M. tuberculosis sigma factors) to regulate a complex transcriptional program. Based on these results, we propose a model to suggest that PhoP-SigE interaction represents a major requirement for the global acid stress response, absence of which leads to strongly reduced survival of the bacilli under acidic pH conditions. These results account for the significant growth attenuation of the phoP mutant in both cellular and animal models, and unravel the underlying global mechanism of how PhoP induces an adaptive program in response to acid stress., (© 2017 John Wiley & Sons Ltd.)
- Published
- 2017
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221. Larvicidal activity of green synthesized silver nanoparticles using Excoecaria agallocha L. (Euphorbiaceae) leaf extract against Aedes aegypti .
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Anil Kumar V, Ammani K, Jobina R, Parasuraman P, and Siddhardha B
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- Animals, Green Chemistry Technology, Larva, Mosquito Vectors, Plant Leaves chemistry, Silver, Aedes, Euphorbiaceae chemistry, Insecticides, Metal Nanoparticles, Plant Extracts chemistry
- Abstract
Green synthesis of silver nanoparticles (AgNPs) using plant extracts has been achieved by eco-friendly reducing and capping agents. The present study was conducted to evaluate the larvicidal efficacies of AgNPs synthesized using aqueous leaf extracts of Excoecaria agallocha against dengue vector, Aedes aegypti . The 3
rd and 4th instar larvae of A. aegypti were exposed to various concentrations of aqueous extracts of E. agallocha , synthesized AgNPs and also crude solvent extracts (methanol and chloroform) for 24 h. The formation of AgNPs using aqueous leaf extracts was observed after 30 min with a characteristic colour change. The results recorded from UV-Vis spectrum, XRD, FTIR, EDX, SEM and HR-TEM were used to characterize and confirm the biosynthesis of AgNPs. The highest larvicidal efficacy of synthesized AgNPs was observed against 3rd instar larvae at LC50 4.65 mg/L, LC90 14.17 mg/L and 4th instar larvae with a concentration of LC50 6.10 mg/L, LC90 15.64 mg/L. A significant larvicidal activity was also observed with crude methanolic extracts against 3rd instar larvae at a concentration LC50 41.74 mg/L, LC90 123.61 mg/L and 4th instar larvae at a concentration of LC50 52.06 mg/L, LC90 166.40 mg/L as compared to the chloroform extract.- Published
- 2016
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222. EspR-dependent ESAT-6 Protein Secretion of Mycobacterium tuberculosis Requires the Presence of Virulence Regulator PhoP.
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Anil Kumar V, Goyal R, Bansal R, Singh N, Sevalkar RR, Kumar A, and Sarkar D
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- Antigens, Bacterial genetics, Bacterial Proteins genetics, Bacterial Secretion Systems genetics, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis pathogenicity, Operon physiology, Response Elements physiology, Transcription Factors genetics, Virulence Factors genetics, Bacterial Proteins metabolism, Bacterial Secretion Systems metabolism, Gene Expression Regulation, Bacterial physiology, Mycobacterium tuberculosis metabolism, Transcription Factors metabolism, Virulence Factors biosynthesis
- Abstract
Attenuation of Mycobacterium bovis BCG strain is related to the loss of the RD1-encoded ESX-1 secretion system. The ESX-1 system secretes virulence factor ESAT-6 that plays a critical role in modulation of the host immune system, which is essential for establishment of a productive infection. Previous studies suggest that among the reasons for attenuation of Mycobacterium tuberculosis H37Ra is a mutation in the phoP gene that interferes with the ESX-1 secretion system and inhibits secretion of ESAT-6. Here, we identify a totally different and distinct regulatory mechanism involving PhoP and transcription regulator EspR on transcriptional control of the espACD operon, which is required for ESX-1-dependent ESAT-6 secretion. Although both of these regulators are capable of influencing espACD expression, we show that activation of espACD requires direct recruitment of both PhoP and EspR at the espACD promoter. The most fundamental insights are derived from the inhibition of EspR binding at the espACD regulatory region of the phoP mutant strain because of PhoP-EspR protein-protein interactions. Based on these results, a model is proposed suggesting how PhoP and EspR protein-protein interactions contribute to activation of espACD expression and, in turn, control ESAT-6 secretion, an essential pathogenic determinant of M. tuberculosis Together, these results have significant implications on the mechanism of virulence regulation of M. tuberculosis., (© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2016
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223. Antibiotic resistance in Pseudomonas aeruginosa and alternative therapeutic options.
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Chatterjee M, Anju CP, Biswas L, Anil Kumar V, Gopi Mohan C, and Biswas R
- Subjects
- Humans, Biological Products pharmacology, Biological Products therapeutic use, Biological Therapy methods, Drug Resistance, Bacterial, Pseudomonas Infections microbiology, Pseudomonas Infections therapy, Pseudomonas aeruginosa drug effects
- Abstract
Pseudomonas aeruginosa is a leading cause of nosocomial infections and is responsible for ∼10% of all hospital-acquired infections worldwide. It continues to pose a therapeutic challenge because of the high rate of morbidity and mortality associated with it and the possibility of development of drug resistance during therapy. Standard antibiotic regimes against P. aeruginosa are increasingly becoming ineffective due to the rise in drug resistance. With the scope for developing new antibiotics being limited, alternative treatment options are gaining more and more attention. A number of recent studies reported complementary and alternative treatment options to combat P. aeruginosa infections. Quorum sensing inhibitors, phages, probiotics, anti-microbial peptides, vaccine antigens and antimicrobial nanoparticles have the potential to act against drug resistant strains. Unfortunately, most studies considering alternative treatment options are still confined in the pre-clinical stages, although some of these findings have tremendous potential to be turned into valuable therapeutics. This review is intended to raise awareness of several novel approaches that can be considered further for combating drug resistant P. aeruginosa infections., (Copyright © 2015 Elsevier GmbH. All rights reserved.)
- Published
- 2016
- Full Text
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224. Inhibiting diffusion of complex contagions in social networks: theoretical and experimental results.
- Author
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Kuhlman CJ, Anil Kumar VS, Marathe MV, Ravi SS, and Rosenkrantz DJ
- Abstract
We consider the problem of inhibiting undesirable contagions (e.g. rumors, spread of mob behavior) in social networks. Much of the work in this context has been carried out under the 1-threshold model, where diffusion occurs when a node has just one neighbor with the contagion. We study the problem of inhibiting more complex contagions in social networks where nodes may have thresholds larger than 1. The goal is to minimize the propagation of the contagion by removing a small number of nodes (called critical nodes ) from the network. We study several versions of this problem and prove that, in general, they cannot even be efficiently approximated to within any factor ρ ≥ 1, unless P = NP . We develop efficient and practical heuristics for these problems and carry out an experimental study of their performance on three well known social networks, namely epinions, wikipedia and slashdot. Our results show that these heuristics perform significantly better than five other known methods. We also establish an efficiently computable upper bound on the number of nodes to which a contagion can spread and evaluate this bound on many real and synthetic networks.
- Published
- 2015
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225. A transcriptional co-repressor regulatory circuit controlling the heat-shock response of Mycobacterium tuberculosis.
- Author
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Singh R, Anil Kumar V, Das AK, Bansal R, and Sarkar D
- Subjects
- Binding Sites, Co-Repressor Proteins metabolism, Macrophages immunology, Macrophages microbiology, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis physiology, Promoter Regions, Genetic, Protein Interaction Mapping, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial, Gene Regulatory Networks, Heat-Shock Proteins metabolism, Heat-Shock Response, Mycobacterium tuberculosis radiation effects, Repressor Proteins metabolism, alpha-Crystallins metabolism
- Abstract
The co-ordinated regulation of heat shock proteins is critically important for the stress response of M. tuberculosis, failure of which results in enhanced immune recognition of the tubercle bacilli with reduced survival during chronic infections. In this study, we show that PhoP regulates the transcription of α-crystallin 2 (acr2), expression of which increases more than any other gene of M. tuberculosis during heat-shock or following macrophage infection. We also show that regulation of acr2 by PhoP is attributable to direct regulator-promoter interactions at specific sites proximal to a sequence motif comprising the target site of another virulence factor, HspR. While both these regulators, on their own, are capable of influencing acr2 expression, remarkably our results show that the two virulence regulators PhoP and HspR interact with each other to influence their in vivo recruitment at the acr2 regulatory region, and in turn, contribute to stress-specific regulation of acr2 expression. We propose a model to suggest how protein-protein interactions between PhoP and HspR influence the regulation of α-crystallin 2, an essential pathogenic determinant of M. tuberculosis., (© 2014 John Wiley & Sons Ltd.)
- Published
- 2014
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- View/download PDF
226. Multidrug-resistant endemic clonal strain of Candida auris in India.
- Author
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Chowdhary A, Anil Kumar V, Sharma C, Prakash A, Agarwal K, Babu R, Dinesh KR, Karim S, Singh SK, Hagen F, and Meis JF
- Subjects
- Adult, Aged, Aged, 80 and over, Amplified Fragment Length Polymorphism Analysis, Candida classification, Candida genetics, Candidiasis drug therapy, Child, Preschool, Cluster Analysis, DNA, Fungal genetics, Drug Resistance, Multiple, Fungal, Female, Genotype, Humans, India epidemiology, Male, Microbial Sensitivity Tests, Middle Aged, Molecular Typing, Mycological Typing Techniques, Tertiary Care Centers, Treatment Failure, Young Adult, Antifungal Agents pharmacology, Candida drug effects, Candida isolation & purification, Candidiasis epidemiology, Candidiasis microbiology, Endemic Diseases
- Abstract
Candida auris is a recently described rare agent of fungemia. It is notable for its antifungal resistance. A total of 15 C. auris isolates, originating from seven cases of fungemia, three cases of diabetic gangrenous foot, and one case of bronchopneumonia from a tertiary care hospital in south India, were investigated. All of the 15 isolates were identified by sequencing and 14 of these along with 12 C. auris isolates previously reported from two hospitals in Delhi, north India, two each from Japan and Korea were genotyped by amplified fragment length polymorphism (AFLP). In vitro antifungal susceptibility testing (AFST) was done by the Clinical and Laboratory Standards Institute (CLSI) broth microdilution method. Candida auris isolates were misidentified as Candida haemulonii by VITEK. All were resistant to fluconazole [geometric mean minimum inhibitory concentration (MIC) 64 μg/ml] and 11 isolates were resistant to voriconazole (MIC ≥1 μg/ml). Forty-seven percent of the C. auris isolates were resistant to flucytosine (MIC ≥64 μg/ml) and 40% had high MIC (≥1 μg/ml) of caspofungin. Breakthrough fungemia developed in 28.6% of patients and therapeutic failure in 4 (66.7%) patients. Interestingly, the 26 Indian C. auris isolates from north and south India were clonal and phenotypically and genotypically distinct from Korean and Japanese isolates. The present study demonstrates that C. auris is a potential emerging pathogen that can cause a wide spectrum of human mycotic infections. The prevalence of a C. auris endemic clonal strain resistant to azoles and other antifungals in Indian hospitals with high rates of therapeutic failure in cases of fungemia is worrisome.
- Published
- 2014
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227. Establishment of cell suspension culture in Marchantia linearis Lehm & Lindenb. for the optimum production of flavonoids.
- Author
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Krishnan R, Anil Kumar VS, and Murugan K
- Abstract
Bryophytes are the second largest group in the plant kingdom, but studies conducted to better understand their chemical composition are limited and scattered. Axenically grown bryophytes expressed potential in biotechnological processes. The present study was designed to investigate the in vitro cell growth, culture parameters and their effect on flavonoid synthesis. Chlorophyll-containing callus cells of Marchantia linearis Lehm & Lindenb. is able to grow under low light in the presence of organic carbon source and retain the ability to produce flavonoids. Highest flavonoid production was achieved using 2,4-dichlorophenoxyacetic acid as growth hormone. Inoculum size, light intensity, organic carbon source and cations are the culture parameters affecting flavonoid productivity. Maximum flavonoid productivity is observed under low light intensity, with a photon flux density ca. 20 μmol/m
2 /s. Optimal inoculum size and glucose concentration for flavonoid production are 10-14 and 2-3 %, respectively. Cations like ferrous trigger flavonoid synthesis by increasing its intracellular concentrations. Flavonoid production in the cell culture is shown to be significantly growth related. Osmotic stress is ineffective in triggering flavonoid synthesis. Methyl jasmonate and 2-(2-fluoro-6-nitrobenzylsulfanyl) pyridine-4-carbothioamide elicitors showed positive effect on intracellular flavonoid content in cultured cells. Using the standard plot of quercetin (y = 0.0148x, R2 = 0.975), the flavonoid contents of in vitro samples were found ranging from 4.0 to 17.7 mg quercetin equivalent/g tissue. Flavonoids are fractionated by HPLC-PAD revealed the presence of quercetin (182.5 μg/g), luteolin (464.5 μg/g) and apigenin (297.5 μg/g). Further studies are warranted to analyze the therapeutic potentiality of the flavonoids in the liverwort.- Published
- 2014
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228. Inferring population-level contact heterogeneity from common epidemic data.
- Author
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Stack JC, Bansal S, Anil Kumar VS, and Grenfell B
- Subjects
- Animals, Female, Humans, Male, Communicable Diseases epidemiology, Communicable Diseases transmission, Disease Outbreaks, Models, Biological
- Abstract
Models of infectious disease spread that incorporate contact heterogeneity through contact networks are an important tool for epidemiologists studying disease dynamics and assessing intervention strategies. One of the challenges of contact network epidemiology has been the difficulty of collecting individual and population-level data needed to develop an accurate representation of the underlying host population's contact structure. In this study, we evaluate the utility of common epidemiological measures (R0, epidemic peak size, duration and final size) for inferring the degree of heterogeneity in a population's unobserved contact structure through a Bayesian approach. We test the method using ground truth data and find that some of these epidemiological metrics are effective at classifying contact heterogeneity. The classification is also consistent across pathogen transmission probabilities, and so can be applied even when this characteristic is unknown. In particular, the reproductive number, R0, turns out to be a poor classifier of the degree heterogeneity, while, unexpectedly, final epidemic size is a powerful predictor of network structure across the range of heterogeneity. We also evaluate our framework on empirical epidemiological data from past and recent outbreaks to demonstrate its application in practice and to gather insights about the relevance of particular contact structures for both specific systems and general classes of infectious disease. We thus introduce a simple approach that can shed light on the unobserved connectivity of a host population given epidemic data. Our study has the potential to inform future data-collection efforts and study design by driving our understanding of germane epidemic measures, and highlights a general inferential approach to learning about host contact structure in contemporary or historic populations of humans and animals.
- Published
- 2013
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229. From biological and social network metaphors to coupled bio-social wireless networks.
- Author
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Barrett CL, Channakeshava K, Eubank S, Anil Kumar VS, and Marathe MV
- Abstract
Biological and social analogies have been long applied to complex systems. Inspiration has been drawn from biological solutions to solve problems in engineering products and systems, ranging from Velcro to camouflage to robotics to adaptive and learning computing methods. In this paper, we present an overview of recent advances in understanding biological systems as networks and use this understanding to design and analyse wireless communication networks. We expand on two applications, namely cognitive sensing and control and wireless epidemiology. We discuss how our work in these two applications is motivated by biological metaphors. We believe that recent advances in computing and communications coupled with advances in health and social sciences raise the possibility of studying coupled bio-social communication networks. We argue that we can better utilise the advances in our understanding of one class of networks to better our understanding of the other.
- Published
- 2011
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230. CYP1A1m2 polymorphisms regulate estrogen and interleukin-6 in lung cancer.
- Author
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Sreelekha TT, Rajesh M, Anil Kumar V, Madhavan J, and Balaram P
- Abstract
Lung cancer, the most common cause of cancer-related death in men and women, is responsible for 1.3 million deaths worldwide annually. Women are diagnosed to a greater extent than men with adenocarcinoma and small cell carcinoma, both of which are secretory-type tumors. Never smokers diagnosed with lung cancer are also predominantly female, demonstrating the association of genetic factors with lung carcinogenesis. Several epidemiologic studies have associates certain CYP1A1 genotypes, alone or in combination, with an increased risk of estrogen-related cancer. The aim of this study was to investigate the impact of the CYP and GST polymorphisms along with estrogen and interleukin-6 (IL-6) levels on the risk of lung cancer. Eighty-six lung cancer patients and 60 controls were included in the study. A significantly higher frequency of polymorphisms in the genes was observed in lung cancer patients compared to controls. Mean estradiol concentration was reduced and IL-6 levels were elevated in patients compared to controls. In conclusion, increased polymorphisms in metabolic genes may be the reason for the reduced estradiol and, thereby, the increased expression of IL-6 in the serum of lung cancer patients.
- Published
- 2010
- Full Text
- View/download PDF
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