169,041 results on '"Watkins A."'
Search Results
302. Bicycle infrastructure and the incidence rate of crashes with cars: A case-control study with Strava data in Atlanta
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Garber, Michael D, Watkins, Kari E, Flanders, W Dana, Kramer, Michael R, Lobelo, RL Felipe, Mooney, Stephen J, Ederer, David J, and McCullough, Lauren E
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Transportation ,Logistics and Supply Chains ,Health Sciences ,Commerce ,Management ,Tourism and Services ,Life on Land ,Bicycle infrastructure ,Strava ,Case-control studies ,Bicycling safety ,Atlanta ,Georgia ,Causal inference ,Public Health and Health Services ,Urban and Regional Planning ,Transportation and Freight Services ,Urban and regional planning ,Transportation ,logistics and supply chains ,Public health - Abstract
Bicycling has individual and collective health benefits. Safety concerns are a deterrent to bicycling. Incomplete data on bicycling volumes has limited epidemiologic research investigating safety impacts of bicycle infrastructure, such as protected bike lanes. In this case-control study, set in Atlanta, Georgia, USA between 2016-10-01 and 2018-08-31, we estimated the incidence rate of police-reported crashes between bicyclists and motor vehicles (n = 124) on several types of infrastructure (off-street paved trails, protected bike lanes, buffered bike lanes, conventional bike lanes, and sharrows) per distance ridden and per intersection entered. To estimate underlying bicycling (the control series), we used a sample of high-resolution bicycling data from Strava, an app, combined with data from 15 on-the-ground bicycle counters to adjust for possible selection bias in the Strava data. We used model-based standardization to estimate effects of treatment on the treated. After adjustment for selection bias and confounding, estimated ratio effects on segments (excluding intersections) with protected bike lanes (incidence rate ratio [IRR] = 0.5 [95% confidence interval: 0.0, 2.5]) and buffered bike lanes (IRR = 0 [0,0]) were below 1, but were above 1 on conventional bike lanes (IRR = 2.8 [1.2, 6.0]) and near null on sharrows (IRR = 1.1 [0.2, 2.9]). Per intersection entry, estimated ratio effects were above 1 for entries originating from protected bike lanes (incidence proportion ratio [IPR] = 3.0 [0.0, 10.8]), buffered bike lanes (IPR = 16.2 [0.0, 53.1]), and conventional bike lanes (IPR = 3.2 [1.8, 6.0]), and were near 1 and below 1, respectively, for those originating from sharrows (IPR = 0.9 [0.2, 2.1]) and off-street paved trails (IPR = 0.7 [0.0, 2.9]). Protected bike lanes and buffered bike lanes had estimated protective effects on segments between intersections but estimated harmful effects at intersections. Conventional bike lanes had estimated harmful effects along segments and at intersections.
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- 2023
303. Physical restraint use in children with mental and behavioral health emergencies in the prehospital setting.
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Foster, Ashley, Watkins, Kenshata, Trivedi, Tarak, Cruz-Romero, Marisol, Leibovich, Sara, Kornblith, Aaron, Sporer, Karl, Kellison, Colleen, Grupp-Phelan, Jacqueline, Daftary, Rajesh, and Glomb, Nicolaus
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adolescent ,child ,emergency medical services ,mental health services ,physical ,restraint - Abstract
OBJECTIVE: Emergency medical services (EMS) transport for mental and behavioral health (MBH) emergencies occurs frequently in children, yet little is understood regarding prehospital physical restraint use despite the potential for serious adverse events. We aim to describe restraint use prevalence and primary impressions among children with MBH emergencies. METHODS: This is a retrospective cross-sectional study of children with MBH emergencies evaluated by Alameda County (ALCO), California EMS from January 1, 2012 to December 31, 2018. Patient demographics and clinical variables were collected from the EMS records including sex, age at time of encounter, year of encounter, transport destination, medication use, and primary impression(s). The primary outcome was the use of physical restraints. Descriptive statistics were used to characterize the primary outcome and associated demographic and diagnostic features, as well as temporal use patterns. Sex and age were compared between restrained and non-restrained youth using chi-square analysis. RESULTS: Over the 7-year study period, ALCO EMS transported 9775 children with MBH emergencies. Of these transports, 1205 (12.3%) were physically restrained. Most children restrained had the primary impression of behavioral/psychiatric crisis (51.1%), psychiatric crisis (27.4%), and behavioral-other (12.4%) and the remaining children (9.1%) had a non-psychiatric/behavioral health primary impression. Over time, there was no statistically significant change in either number of children with MBH emergencies transported or physical restraint rate. CONCLUSIONS: More than 1 in 8 children with MBH emergencies are being physically restrained during EMS transport. Restraint rate did not substantially change over time. Further studies to understand existing restraint rates and EMS resources available to address acute agitation in children are needed to inform quality and care enhancing initiatives.
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- 2023
304. Shades of meaning: Uncovering the geometry of ambiguous word representations through contextualised language models
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Cevoli, Benedetta, Watkins, Chris, Gao, Yang, and Rastle, Kathleen
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Computer Science - Computation and Language - Abstract
Lexical ambiguity presents a profound and enduring challenge to the language sciences. Researchers for decades have grappled with the problem of how language users learn, represent and process words with more than one meaning. Our work offers new insight into psychological understanding of lexical ambiguity through a series of simulations that capitalise on recent advances in contextual language models. These models have no grounded understanding of the meanings of words at all; they simply learn to predict words based on the surrounding context provided by other words. Yet, our analyses show that their representations capture fine-grained meaningful distinctions between unambiguous, homonymous, and polysemous words that align with lexicographic classifications and psychological theorising. These findings provide quantitative support for modern psychological conceptualisations of lexical ambiguity and raise new challenges for understanding of the way that contextual information shapes the meanings of words across different timescales.
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- 2023
305. Generating a Graph Colouring Heuristic with Deep Q-Learning and Graph Neural Networks
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Watkins, George, Montana, Giovanni, and Branke, Juergen
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Computer Science - Machine Learning - Abstract
The graph colouring problem consists of assigning labels, or colours, to the vertices of a graph such that no two adjacent vertices share the same colour. In this work we investigate whether deep reinforcement learning can be used to discover a competitive construction heuristic for graph colouring. Our proposed approach, ReLCol, uses deep Q-learning together with a graph neural network for feature extraction, and employs a novel way of parameterising the graph that results in improved performance. Using standard benchmark graphs with varied topologies, we empirically evaluate the benefits and limitations of the heuristic learned by ReLCol relative to existing construction algorithms, and demonstrate that reinforcement learning is a promising direction for further research on the graph colouring problem., Comment: 15 pages, 6 figures, to be published in LION17 conference proceedings
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- 2023
306. Fundamental Symmetries, Neutrons, and Neutrinos (FSNN): Whitepaper for the 2023 NSAC Long Range Plan
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Acharya, B., Adams, C., Aleksandrova, A. A., Alfonso, K., An, P., Baeßler, S., Balantekin, A. B., Barbeau, P. S., Bellini, F., Bellini, V., Beminiwattha, R. S., Bernauer, J. C., Bhattacharya, T., Bishof, M., Bolotnikov, A. E., Breur, P. A., Brodeur, M., Brodsky, J. P., Broussard, L. J., Brunner, T., Burdette, D. P., Caylor, J., Chiu, M., Cirigliano, V., Clark, J. A., Clayton, S. M., Daniels, T. V., Darroch, L., Davoudi, Z., de Gouvêa, A., Dekens, W., Demarteau, M., DeMille, D., Deshpande, A., Detwiler, J. A., Dodson, G. W., Dolinski, M. J., Elliott, S. R., Engel, J., Erler, J., Filippone, B. W., Fomin, N., Formaggio, J. A., Friesen, F. Q. L., Fry, J., Fujikawa, B. K., Fuller, G., Fuyuto, K., Gallant, A. T., Gallina, G., Ruiz, A. Garcia, Ruiz, R. F. Garcia, Gardner, S., Gonzalez, F. M., Gratta, G., Gruszko, J., Gudkov, V., Guiseppe, V. E., Gutierrez, T. D., Hansen, E. V., Hardy, C. A., Haxton, W. C., Hayen, L., Hedges, S., Heeger, K. M., Heffner, M., Heise, J., Henning, R., Hergert, H., Hertzog, D. W., Aguilar, D. Hervas, Holt, J. D., Hoogerheide, S. F., Hoppe, E. W., Horoi, M., Howell, C. R., Huang, M., Hutzler, N. R., Imam, K., Ito, T. M., Jamil, A., Janssens, R. V., Jayich, A. M., Jones, B. J. P., Kammel, P., Liu, K. F., Khachatryan, V., King, P. M., Klein, J. R., Kneller, J. P., Kolomensky, Yu. G., Korsch, W., Krücken, R., Kumar, K. S., Launey, K. D., Lawrence, D., Leach, K. G., Lehnert, B., Lenardo, B. G., Li, Z., Lin, H. -W., Longfellow, B., Lopez-Caceres, S., Lunardini, C., MacLellan, R., Markoff, D. M., Maruyama, R. H., Mathews, D. G., Melconian, D., Mereghetti, E., Mohanmurthy, P., Moore, D. C., Mueller, P. E., Mumm, H. P., Nazarewicz, W., Newby, J., Nicholson, A. N., Novitski, E., Ondze, J. C. Nzobadila, O'Donnell, T., Gann, G. D. Orebi, Orrell, J. L., Ouellet, J. L., Parno, D. S., Paschke, K. D., Pastore, S., Pattie Jr, R. W., Petrov, A. A., Pitt, M. L., Plaster, B., Pocanic, D., Pocar, A., Poon, A. W. P., Radford, D. C., Rahangdale, H., Rasco, B. C., Rasiwala, H., Redwine, R. P., Ritz, A., Rogers, L., Ron, G., Saldanha, R., Sangiorgio, S., Sargsyan, G. H., Saunders, A., Savard, G., Schaper, D. C., Scholberg, K., Scielzo, N. D., Seng, C. -Y., Shindler, A., Singh, J. T., Singh, M., Singh, V., Snow, W. M., Soma, A. K., Souder, P. A., Speller, D. H., Stachurska, J., Surukuchi, P. T., Oregui, B. Tapia, Tomalak, O., Torres, J. A., Tyuka, O. A., VanDevender, B. A., Varriano, L., Vogt, R., Walker-Loud, A., Wamba, K., Watkins, S. L., Wietfeldt, F. E., Williams, W. D., Wilson, J. T., Winslow, L., Yan, X. L., Yang, L., Young, A. R., Zheng, X., and Zhou, Y.
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Nuclear Experiment ,Nuclear Theory - Abstract
This whitepaper presents the research priorities decided on by attendees of the 2022 Town Meeting for Fundamental Symmetries, Neutrons and Neutrinos, which took place December 13-15, 2022 in Chapel Hill, NC, as part of the Nuclear Science Advisory Committee (NSAC) 2023 Long Range Planning process. A total of 275 scientists registered for the meeting. The whitepaper makes a number of explicit recommendations and justifies them in detail.
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- 2023
307. Kinematic analysis of the super-extended HI disk of the nearby spiral galaxy M83
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Eibensteiner, Cosima, Bigiel, Frank, Leroy, Adam K., Koch, Eric W., Rosolowsky, Erik, Schinnerer, Eva, Sardone, Amy, Meidt, Sharon, de Blok, W. J. G, Thilker, David, Pisano, D. J., Ott, Jürgen, Barnes, Ashley, Querejeta, Miguel, Emsellem, Eric, Puschnig, Johannes, Utomo, Dyas, Bešlic, Ivana, Brok, Jakob den, Faridani, Shahram, Glover, Simon C. O., Grasha, Kathryn, Hassani, Hamid, Henshaw, Jonathan D., Jiménez-Donaire, Maria J., Kerp, Jürgen, Dale, Daniel A., Kruijssen, J. M. Diederik, Laudage, Sebastian, Sanchez-Blazquez, Patricia, Smith, Rowan, Stuber, Sophia, Pessa, Ismael, Watkins, Elizabeth J., Williams, Thomas G., and Winkel, Benjamin
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Astrophysics - Astrophysics of Galaxies - Abstract
We present new HI observations of the nearby massive spiral galaxy M83, taken with the VLA at $21^{\prime\prime}$ angular resolution ($\approx500$ pc) of an extended ($\sim$1.5 deg$^2$) 10-point mosaic combined with GBT single dish data. We study the super-extended HI disk of M83 (${\sim}$50 kpc in radius), in particular disc kinematics, rotation and the turbulent nature of the atomic interstellar medium. We define distinct regions in the outer disk ($r_{\rm gal}>$central optical disk), including ring, southern area, and southern and northern arm. We examine HI gas surface density, velocity dispersion and non-circular motions in the outskirts, which we compare to the inner optical disk. We find an increase of velocity dispersion ($\sigma_v$) towards the pronounced HI ring, indicative of more turbulent HI gas. Additionally, we report over a large galactocentric radius range (until $r_{\rm gal}{\sim}$50 kpc) that $\sigma_v$ is slightly larger than thermal (i.e. $>8$km s$^{-1}$ ). We find that a higher star formation rate (as traced by FUV emission) is not always necessarily associated with a higher HI velocity dispersion, suggesting that radial transport could be a dominant driver for the enhanced velocity dispersion. We further find a possible branch that connects the extended HI disk to the dwarf irregular galaxy UGCA365, that deviates from the general direction of the northern arm. Lastly, we compare mass flow rate profiles (based on 2D and 3D tilted ring models) and find evidence for outflowing gas at r$_{\rm gal}$ $\sim$2 kpc, inflowing gas at r$_{\rm gal}$ $\sim$5.5 kpc and outflowing gas at r$_{\rm gal}$ $\sim$14 kpc. We caution that mass flow rates are highly sensitive to the assumed kinematic disk parameters, in particular, to the inclination., Comment: accepted for publication in A&A; 16 pages, 12 figures (+8 pages appendix)
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- 2023
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308. Towards Solving Fuzzy Tasks with Human Feedback: A Retrospective of the MineRL BASALT 2022 Competition
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Milani, Stephanie, Kanervisto, Anssi, Ramanauskas, Karolis, Schulhoff, Sander, Houghton, Brandon, Mohanty, Sharada, Galbraith, Byron, Chen, Ke, Song, Yan, Zhou, Tianze, Yu, Bingquan, Liu, He, Guan, Kai, Hu, Yujing, Lv, Tangjie, Malato, Federico, Leopold, Florian, Raut, Amogh, Hautamäki, Ville, Melnik, Andrew, Ishida, Shu, Henriques, João F., Klassert, Robert, Laurito, Walter, Novoseller, Ellen, Goecks, Vinicius G., Waytowich, Nicholas, Watkins, David, Miller, Josh, and Shah, Rohin
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Computer Science - Artificial Intelligence - Abstract
To facilitate research in the direction of fine-tuning foundation models from human feedback, we held the MineRL BASALT Competition on Fine-Tuning from Human Feedback at NeurIPS 2022. The BASALT challenge asks teams to compete to develop algorithms to solve tasks with hard-to-specify reward functions in Minecraft. Through this competition, we aimed to promote the development of algorithms that use human feedback as channels to learn the desired behavior. We describe the competition and provide an overview of the top solutions. We conclude by discussing the impact of the competition and future directions for improvement.
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- 2023
309. Stellar associations powering HII regions $\unicode{x2013}$ I. Defining an evolutionary sequence
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Scheuermann, Fabian, Kreckel, Kathryn, Barnes, Ashley T., Belfiore, Francesco, Groves, Brent, Hannon, Stephen, Lee, Janice C., Minsley, Rebecca, Rosolowsky, Erik, Bigiel, Frank, Blanc, Guillermo A., Boquien, Médéric, Dale, Daniel A., Deger, Sinan, Egorov, Oleg V., Emsellem, Eric, Glover, Simon C. O., Grasha, Kathryn, Hassani, Hamid, Jeffreson, Sarah, Klessen, Ralf S., Kruijssen, J. M. Diederik, Larson, Kirsten L., Leroy, Adam K., Lopez, Laura, Pan, Hsi-An, Sánchez-Blázquez, Patricia, Santoro, Francesco, Schinnerer, Eva, Thilker, David A., Whitmore, Brad C., Watkins, Elizabeth J., and Williams, Thomas G.
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Astrophysics - Astrophysics of Galaxies - Abstract
Connecting the gas in HII regions to the underlying source of the ionizing radiation can help us constrain the physical processes of stellar feedback and how HII regions evolve over time. With PHANGS$\unicode{x2013}$MUSE we detect nearly 24,000 HII regions across 19 galaxies and measure the physical properties of the ionized gas (e.g. metallicity, ionization parameter, density). We use catalogues of multi-scale stellar associations from PHANGS$\unicode{x2013}$HST to obtain constraints on the age of the ionizing sources. We construct a matched catalogue of 4,177 HII regions that are clearly linked to a single ionizing association. A weak anti-correlation is observed between the association ages and the H$\alpha$ equivalent width EW(H$\alpha$), the H$\alpha$/FUV flux ratio and the ionization parameter, log q. As all three are expected to decrease as the stellar population ages, this could indicate that we observe an evolutionary sequence. This interpretation is further supported by correlations between all three properties. Interpreting these as evolutionary tracers, we find younger nebulae to be more attenuated by dust and closer to giant molecular clouds, in line with recent models of feedback-regulated star formation. We also observe strong correlations with the local metallicity variations and all three proposed age tracers, suggestive of star formation preferentially occurring in locations of locally enhanced metallicity. Overall, EW(H$\alpha$) and log q show the most consistent trends and appear to be most reliable tracers for the age of an HII region., Comment: 15 pages, 12 figures. Accepted for publication in MNRAS
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- 2023
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310. First measurement of the nuclear-recoil ionization yield in silicon at 100 eV
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Albakry, M. F., Alkhatib, I., Alonso, D., Amaral, D. W. P., An, P., Aralis, T., Aramaki, T., Arnquist, I. J., Langroudy, I. Ataee, Azadbakht, E., Banik, S., Barbeau, P. S., Bathurst, C., Bhattacharyya, R., Brink, P. L., Bunker, R., Cabrera, B., Calkins, R., Cameron, R. A., Cartaro, C., Cerdeño, D. G., Chang, Y. -Y., Chaudhuri, M., Chen, R., Chott, N., Cooley, J., Coombes, H., Corbett, J., Cushman, P., Das, S., De Brienne, F., Rios, M., Dharani, S., di Vacri, M. L., Diamond, M. D., Elwan, M., Fascione, E., Figueroa-Feliciano, E., Fink, C. W., Fouts, K., Fritts, M., Gerbier, G., Germond, R., Ghaith, M., Golwala, S. R., Hall, J., Hassan, N., Hedges, S. C., Hines, B. A., Hong, Z., Hoppe, E. W., Hsu, L., Huber, M. E., Iyer, V., Kashyap, V. K. S., Kelsey, M. H., Kubik, A., Kurinsky, N. A., Lee, M., Li, A., Li, L., Litke, M., Liu, J., Liu, Y., Loer, B., Asamar, E. Lopez, Lukens, P., MacFarlane, D. B., Mahapatra, R., Mandic, V., Mast, N., Mayer, A. J., Theenhausen, H. Meyer zu, Michaud, ., Michielin, E., Mirabolfathi, N., Mohanty, B., Nebolsky, B., Nelson, J., Neog, H., Novati, V., Orrell, J. L., Osborne, M. D., Oser, S. M., Page, W. A., Pandey, S., Partridge, R., Pedreros, D. S., Perna, L., Podviianiuk, R., Ponce, F., Poudel, S., Pradeep, A., Pyle, M., Rau, W., Reid, E., Ren, R., Reynolds, T., Roberts, A., Robinson, A. E., Runge, J., Saab, T., Sadek, D., Sadoulet, B., Saikia, I., Sander, J., Sattari, A., Schmidt, B., Schnee, R. W., Scorza, S., Serfass, B., Poudel, S. S., Sincavage, D. J., Sinervo, P., Speaks, Z., Street, J., Sun, H., Thasrawala, F. K., Toback, D., Underwood, R., Verma, S., Villano, A. N., von Krosigk, B., Watkins, S. L., Wen, O., Williams, Z., Wilson, M. J., Winchell, J., Wykoff, K., Yellin, S., Young, B. A., Yu, T. C., Zatschler, B., Zatschler, S., Zaytsev, A., Zeolla, A., Zhang, E., Zheng, L., Zheng, Y., and Zuniga, A.
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Physics - Instrumentation and Detectors ,Astrophysics - Instrumentation and Methods for Astrophysics ,High Energy Physics - Experiment ,Nuclear Experiment - Abstract
We measured the nuclear--recoil ionization yield in silicon with a cryogenic phonon-sensitive gram-scale detector. Neutrons from a mono-energetic beam scatter off of the silicon nuclei at angles corresponding to energy depositions from 4\,keV down to 100\,eV, the lowest energy probed so far. The results show no sign of an ionization production threshold above 100\,eV. These results call for further investigation of the ionization yield theory and a comprehensive determination of the detector response function at energies below the keV scale.
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- 2023
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311. Search for Two-neutrino Double-Beta Decay of $^{136}\rm Xe$ to the $0^+_1$ excited state of $^{136}\rm Ba$ with the Complete EXO-200 Dataset
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Collaboration, EXO-200, Kharusi, S. Al, Anton, G., Badhrees, I., Barbeau, P. S., Beck, D., Belov, V., Bhatta, T., Breidenbach, M., Brunner, T., Cao, G. F., Cen, W. R., Chambers, C., Cleveland, B., Coon, M., Craycraft, A., Daniels, T., Darroch, L., Daugherty, S. J., Davis, J., Delaquis, S., Der Mesrobian-Kabakian, A., DeVoe, R., Dilling, J., Dolgolenko, A., Dolinski, M. J., Echevers, J., Fairbank Jr., W., Fairbank, D., Farine, J., Feyzbakhsh, S., Fierlinger, P., Fu, Y. S., Fudenberg, D., Gautam, P., Gornea, R., Gratta, G., Hall, C., Hansen, E. V., Hoessl, J., Hufschmidt, P., Hughes, M., Iverson, A., Jamil, A., Jessiman, C., Jewell, M. J., Johnson, A., Karelin, A., Kaufman, L. J., Koffas, T., Krücken, R., Kuchenkov, A., Kumar, K. S., Lan, Y., Larson, A., Lenardo, B. G., Leonard, D. S., Li, G. S., Li, S., Li, Z., Licciardi, C., Lin, Y. H., MacLellan, R., McElroy, T., Michel, T., Mong, B., Moore, D. C., Murray, K., Njoya, O., Nusair, O., Odian, A., Ostrovskiy, I., Perna, A., Piepke, A., Pocar, A., Retière, F., Robinson, A. L., Rowson, P. C., Runge, J., Schmidt, S., Sinclair, D., Skarpaas, K., Soma, A. K., Stekhanov, V., Tarka, M., Thibado, S., Todd, J., Tolba, T., Totev, T. I., Tsang, R., Veenstra, B., Veeraraghavan, V., Vogel, P., Vuilleumier, J. -L., Wagenpfeil, M., Watkins, J., Weber, M., Wen, L. J., Wichoski, U., Wrede, G., Wu, S. X., Xia, Q., Yahne, D. R., Yang, L., Yen, Y. -R., Zeldovich, O. Ya., and Ziegler, T.
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High Energy Physics - Experiment ,Nuclear Experiment - Abstract
A new search for two-neutrino double-beta ($2\nu\beta\beta$) decay of $^{136}\rm Xe$ to the $0^+_1$ excited state of $^{136}\rm Ba$ is performed with the full EXO-200 dataset. A deep learning-based convolutional neural network is used to discriminate signal from background events. Signal detection efficiency is increased relative to previous searches by EXO-200 by more than a factor of two. With the addition of the Phase II dataset taken with an upgraded detector, the median 90$\%$ confidence level half-life sensitivity of $2\nu\beta\beta$ decay to the $0^+_1$ state of $^{136}\rm Ba$ is $2.9 \times 10^{24}~\rm yr$ using a total $^{136}\rm Xe$ exposure of $234.1~\rm kg~yr$. No statistically significant evidence for $2\nu\beta\beta$ decay to the $0^+_1$ state is observed, leading to a lower limit of $T^{2\nu}_{1/2}(0^+ \rightarrow 0^+_1) > 1.4\times10^{24}~\rm yr$ at 90$\%$ confidence level, improved by 70$\%$ relative to the current world's best constraint., Comment: 9 pages, 7 figures, 2 tables
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- 2023
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312. Quantum Information Science and Technology for Nuclear Physics. Input into U.S. Long-Range Planning, 2023
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Beck, Douglas, Carlson, Joseph, Davoudi, Zohreh, Formaggio, Joseph, Quaglioni, Sofia, Savage, Martin, Barata, Joao, Bhattacharya, Tanmoy, Bishof, Michael, Cloet, Ian, Delgado, Andrea, DeMarco, Michael, Fink, Caleb, Florio, Adrien, Francois, Marianne, Grabowska, Dorota, Hoogerheide, Shannon, Huang, Mengyao, Ikeda, Kazuki, Illa, Marc, Joo, Kyungseon, Kharzeev, Dmitri, Kowalski, Karol, Lai, Wai Kin, Leach, Kyle, Loer, Ben, Low, Ian, Martin, Joshua, Moore, David, Mehen, Thomas, Mueller, Niklas, Mulligan, James, Mumm, Pieter, Pederiva, Francesco, Pisarski, Rob, Ploskon, Mateusz, Reddy, Sanjay, Rupak, Gautam, Singh, Hersh, Singh, Maninder, Stetcu, Ionel, Stryker, Jesse, Szypryt, Paul, Valgushev, Semeon, VanDevender, Brent, Watkins, Samuel, Wilson, Christopher, Yao, Xiaojun, Afanasev, Andrei, Balantekin, Akif Baha, Baroni, Alessandro, Bunker, Raymond, Chakraborty, Bipasha, Chernyshev, Ivan, Cirigliano, Vincenzo, Clark, Benjamin, Dhiman, Shashi Kumar, Du, Weijie, Dutta, Dipangkar, Edwards, Robert, Flores, Abraham, Galindo-Uribarri, Alfredo, Ruiz, Ronald Fernando Garcia, Gueorguiev, Vesselin, Guo, Fanqing, Hansen, Erin, Hernandez, Hector, Hattori, Koichi, Hauke, Philipp, Hjorth-Jensen, Morten, Jankowski, Keith, Johnson, Calvin, Lacroix, Denis, Lee, Dean, Lin, Huey-Wen, Liu, Xiaohui, Llanes-Estrada, Felipe J., Looney, John, Lukin, Misha, Mercenne, Alexis, Miller, Jeff, Mottola, Emil, Mueller, Berndt, Nachman, Benjamin, Negele, John, Orrell, John, Patwardhan, Amol, Phillips, Daniel, Poole, Stephen, Qualters, Irene, Rumore, Mike, Schaefer, Thomas, Scott, Jeremy, Singh, Rajeev, Vary, James, Galvez-Viruet, Juan-Jose, Wendt, Kyle, Xing, Hongxi, Yang, Liang, Young, Glenn, and Zhao, Fanyi
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Nuclear Experiment ,Nuclear Theory ,Quantum Physics - Abstract
In preparation for the 2023 NSAC Long Range Plan (LRP), members of the Nuclear Science community gathered to discuss the current state of, and plans for further leveraging opportunities in, QIST in NP research at the Quantum Information Science for U.S. Nuclear Physics Long Range Planning workshop, held in Santa Fe, New Mexico on January 31 - February 1, 2023. The workshop included 45 in-person participants and 53 remote attendees. The outcome of the workshop identified strategic plans and requirements for the next 5-10 years to advance quantum sensing and quantum simulations within NP, and to develop a diverse quantum-ready workforce. The plans include resolutions endorsed by the participants to address the compelling scientific opportunities at the intersections of NP and QIST. These endorsements are aligned with similar affirmations by the LRP Computational Nuclear Physics and AI/ML Workshop, the Nuclear Structure, Reactions, and Astrophysics LRP Town Hall, and the Fundamental Symmetries, Neutrons, and Neutrinos LRP Town Hall communities., Comment: A white paper for the 2023 nuclear physics long-range planning activity, emerging from the workshop "Quantum Information Science for U.S. Nuclear Physics Long Range Planning'', held in Santa Fe, New Mexico on January 31 - February 1, 2023. 26 pages with 7 figures
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- 2023
313. JWST-TST Proper Motions: I. High-Precision NIRISS Calibration and Large Magellanic Cloud Kinematics
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Libralato, M., Bellini, A., van der Marel, R. P., Anderson, J., Sohn, S. T., Watkins, L. L., Alderson, L., Allen, N., Clampin, M., Glidden, A., Goyal, J., Hoch, K., Huang, J., Kammerer, J., Lewis, N. K., Lin, Z., Long, D., Louie, D., MacDonald, R. J., Mountain, M., Peña-Guerrero, M., Perrin, M. D., Pueyo, L., Rebollido, I., Rickman, E., Seager, S., Stevenson, K. B., Valenti, J. A., Valentine, D., and Wakeford, H. R.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
We develop and disseminate effective point-spread functions and geometric-distortion solutions for high-precision astrometry and photometry with the JWST NIRISS instrument. We correct field dependencies and detector effects, and assess the quality and the temporal stability of the calibrations. As a scientific application and validation, we study the proper motion (PM) kinematics of stars in the JWST calibration field near the Large Magellanic Cloud (LMC) center, comparing to a first-epoch Hubble Space Telescope (HST) archival catalog with a 16-yr baseline. For stars with G~20, the median PM uncertainty is ~13 $\mu$as yr$^{-1}$ (3.1 km s$^{-1}$), better than Gaia DR3 typically achieves for its very best-measured stars. We kinematically detect the known star cluster OGLE-CL LMC 407, measure its absolute PM for the first time, and show how this differs from other LMC populations. The inferred cluster dispersion sets an upper limit of 24 $\mu$as yr$^{-1}$ (5.6 km s$^{-1}$) on systematic uncertainties. Red-giant-branch stars have a velocity dispersion of 33.8 $\pm$ 0.6 km s$^{-1}$, while younger blue populations have a narrower velocity distribution, but with a significant kinematical substructure. We discuss how this relates to the larger velocity dispersions inferred from Gaia DR3. These results establish JWST as capable of state-of-the-art astrometry, building on the extensive legacy of HST. This is the first paper in a series by our JWST Telescope Scientist Team (TST), in which we will use Guaranteed Time Observations to study the PM kinematics of various stellar systems in the Local Group., Comment: 28 pages, 25 figures, 2 tables. Accepted for publication in ApJ. The effective point-spread-function models, the geometric-distortion solutions and a preliminary version of the code are available at the links provided in the manuscript
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- 2023
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314. Improving Expert Specialization in Mixture of Experts
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Krishnamurthy, Yamuna, Watkins, Chris, and Gaertner, Thomas
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Neural and Evolutionary Computing - Abstract
Mixture of experts (MoE), introduced over 20 years ago, is the simplest gated modular neural network architecture. There is renewed interest in MoE because the conditional computation allows only parts of the network to be used during each inference, as was recently demonstrated in large scale natural language processing models. MoE is also of potential interest for continual learning, as experts may be reused for new tasks, and new experts introduced. The gate in the MoE architecture learns task decompositions and individual experts learn simpler functions appropriate to the gate's decomposition. In this paper: (1) we show that the original MoE architecture and its training method do not guarantee intuitive task decompositions and good expert utilization, indeed they can fail spectacularly even for simple data such as MNIST and FashionMNIST; (2) we introduce a novel gating architecture, similar to attention, that improves performance and results in a lower entropy task decomposition; and (3) we introduce a novel data-driven regularization that improves expert specialization. We empirically validate our methods on MNIST, FashionMNIST and CIFAR-100 datasets., Comment: 14 pages including appendix
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- 2023
315. A possible signature of the influence of tidal perturbations in dwarf galaxy scaling relations
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Watkins, A. E., Salo, H., Kaviraj, S., Collins, C. A., Knapen, J. H., Venhola, A., and Román, J.
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Astrophysics - Astrophysics of Galaxies - Abstract
Dwarf galaxies are excellent cosmological probes, because their shallow potential wells make them very sensitive to the key processes that drive galaxy evolution, including baryonic feedback, tidal interactions, and ram pressure stripping. However, some of the key parameters of dwarf galaxies, which help trace the effects of these processes, are still debated, including the relationship between their sizes and masses. We re-examine the Fornax Cluster dwarf population from the point of view of isomass-radius--stellar mass relations (IRSMRs) using the Fornax Deep Survey Dwarf galaxy Catalogue, with the centrally located (among dwarfs) $3.63 \mathcal{M}_{\odot}$~pc$^{-2}$ isodensity radius defining our fiducial relation. This relation is a powerful diagnostic tool for identifying dwarfs with unusual structure, as dwarf galaxies' remarkable monotonicity in light profile shapes, as a function of stellar mass, reduces the relation's scatter tremendously. By examining how different dwarf properties (colour, tenth-nearest-neighbour distance, etc.) correlate with distance from our fiducial relation, we find a significant population of structural outliers with comparatively lower central mass surface density and larger half-light-radii, residing in locally denser regions in the cluster, albeit with similar red colours. We propose that these faint, extended outliers likely formed through tidal disturbances, which make the dwarfs more diffuse, but with little mass loss. Comparing these outliers with ultra-diffuse galaxies (UDGs), we find that the term UDG lacks discriminatory power; UDGs in the Fornax Cluster lie both on and off of IRSMRs defined at small radii, while IRSMR outliers with masses below $\sim 10^{7.5} \mathcal{M}_{\odot}$ are excluded from the UDG classification due to their small effective radii., Comment: 16 pages (+2 appendix), 10 figures, accepted for publication in MNRAS
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- 2023
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316. Aligning Text-to-Image Models using Human Feedback
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Lee, Kimin, Liu, Hao, Ryu, Moonkyung, Watkins, Olivia, Du, Yuqing, Boutilier, Craig, Abbeel, Pieter, Ghavamzadeh, Mohammad, and Gu, Shixiang Shane
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Deep generative models have shown impressive results in text-to-image synthesis. However, current text-to-image models often generate images that are inadequately aligned with text prompts. We propose a fine-tuning method for aligning such models using human feedback, comprising three stages. First, we collect human feedback assessing model output alignment from a set of diverse text prompts. We then use the human-labeled image-text dataset to train a reward function that predicts human feedback. Lastly, the text-to-image model is fine-tuned by maximizing reward-weighted likelihood to improve image-text alignment. Our method generates objects with specified colors, counts and backgrounds more accurately than the pre-trained model. We also analyze several design choices and find that careful investigations on such design choices are important in balancing the alignment-fidelity tradeoffs. Our results demonstrate the potential for learning from human feedback to significantly improve text-to-image models.
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- 2023
317. A Search for Low-mass Dark Matter via Bremsstrahlung Radiation and the Migdal Effect in SuperCDMS
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Albakry, M. F., Alkhatib, I., Alonso, D., Amaral, D. W. P., Aralis, T., Aramaki, T., Arnquist, I. J., Langroudy, I. Ataee, Azadbakht, E., Banik, S., Bathurst, C., Bhattacharyya, R., Brink, P. L., Bunker, R., Cabrera, B., Calkins, R., Cameron, R. A., Cartaro, C., Cerdeño, D. G., Chang, Y. -Y., Chaudhuri, M., Chen, R., Chott, N., Cooley, J., Coombes, H., Corbett, J., Cushman, P., Das, S., De Brienne, F., Rios, M., Dharani, S., di Vacri, M. L., Diamond, M. D., Elwan, M., Fascione, E., Figueroa-Feliciano, E., Fink, C. W., Fouts, K., Fritts, M., Gerbier, G., Germond, R., Ghaith, M., Golwala, S. R., Hall, J., Hassan, N., Hines, B. A., Hong, Z., Hoppe, E. W., Hsu, L., Huber, M. E., Iyer, V., Jardin, D., Kashyap, V. K. S., Kelsey, M. H., Kubik, A., Kurinsky, N. A., Lee, M., Li, A., Litke, M., Liu, J., Liu, Y., Loer, B., Asamar, E. Lopez, Lukens, P., MacFarlane, D. B., Mahapatra, R., Mast, N., Mayer, A. J., Theenhausen, H. Meyer zu, Michaud, É., Michielin, E., Mirabolfathi, N., Mohanty, B., Nelson, J., Neog, H., Novati, V., Orrell, J. L., Osborne, M. D., Oser, S. M., Page, W. A., Pandey, S., Partridge, R., Pedreros, D. S., Perna, L., Podviianiuk, R., Ponce, F., Poudel, S., Pradeep, A., Pyle, M., Rau, W., Reid, E., Ren, R., Reynolds, T., Roberts, A., Robinson, A. E., Saab, T., Sadek, D., Sadoulet, B., Saikia, I., Sander, J., Sattari, A., Schmidt, B., Schnee, R. W., Scorza, S., Serfass, B., Poudel, S. S., Sincavage, D. J., Sinervo, P., Street, J., Sun, H., Terry, G. D., Thasrawala, F. K., Toback, D., Underwood, R., Verma, S., Villano, A. N., von Krosigk, B., Watkins, S. L., Wen, O., Williams, Z., Wilson, M. J., Winchell, J., Wu, C. -P., Wykoff, K., Yellin, S., Young, B. A., Yu, T. C., Zatschler, B., Zatschler, S., Zaytsev, A., Zhang, E., Zheng, L., and Zuniga, A.
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High Energy Physics - Experiment ,High Energy Physics - Phenomenology - Abstract
We present a new analysis of previously published of SuperCDMS data using a profile likelihood framework to search for sub-GeV dark matter (DM) particles through two inelastic scattering channels: bremsstrahlung radiation and the Migdal effect. By considering these possible inelastic scattering channels, experimental sensitivity can be extended to DM masses that are undetectable through the DM-nucleon elastic scattering channel, given the energy threshold of current experiments. We exclude DM masses down to $220~\textrm{MeV}/c^2$ at $2.7 \times 10^{-30}~\textrm{cm}^2$ via the bremsstrahlung channel. The Migdal channel search provides overall considerably more stringent limits and excludes DM masses down to $30~\textrm{MeV}/c^2$ at $5.0 \times 10^{-30}~\textrm{cm}^2$., Comment: Submitted to PRD
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- 2023
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318. SupSiam: Non-contrastive Auxiliary Loss for Learning from Molecular Conformers
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Maser, Michael, Park, Ji Won, Lin, Joshua Yao-Yu, Lee, Jae Hyeon, Frey, Nathan C., and Watkins, Andrew
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Computer Science - Machine Learning - Abstract
We investigate Siamese networks for learning related embeddings for augmented samples of molecular conformers. We find that a non-contrastive (positive-pair only) auxiliary task aids in supervised training of Euclidean neural networks (E3NNs) and increases manifold smoothness (MS) around point-cloud geometries. We demonstrate this property for multiple drug-activity prediction tasks while maintaining relevant performance metrics, and propose an extension of MS to probabilistic and regression settings. We provide an analysis of representation collapse, finding substantial effects of task-weighting, latent dimension, and regularization. We expect the presented protocol to aid in the development of reliable E3NNs from molecular conformers, even for small-data drug discovery programs., Comment: Submitted to the MLDD workshop, ICLR 2023
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- 2023
319. Guiding Pretraining in Reinforcement Learning with Large Language Models
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Du, Yuqing, Watkins, Olivia, Wang, Zihan, Colas, Cédric, Darrell, Trevor, Abbeel, Pieter, Gupta, Abhishek, and Andreas, Jacob
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Computation and Language - Abstract
Reinforcement learning algorithms typically struggle in the absence of a dense, well-shaped reward function. Intrinsically motivated exploration methods address this limitation by rewarding agents for visiting novel states or transitions, but these methods offer limited benefits in large environments where most discovered novelty is irrelevant for downstream tasks. We describe a method that uses background knowledge from text corpora to shape exploration. This method, called ELLM (Exploring with LLMs) rewards an agent for achieving goals suggested by a language model prompted with a description of the agent's current state. By leveraging large-scale language model pretraining, ELLM guides agents toward human-meaningful and plausibly useful behaviors without requiring a human in the loop. We evaluate ELLM in the Crafter game environment and the Housekeep robotic simulator, showing that ELLM-trained agents have better coverage of common-sense behaviors during pretraining and usually match or improve performance on a range of downstream tasks. Code available at https://github.com/yuqingd/ellm., Comment: ICML 2023
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- 2023
320. Relaxed blue ellipticals: accretion-driven stellar growth is a key evolutionary channel for low mass elliptical galaxies
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Lazar, Ilin, Kaviraj, Sugata, Martin, Garreth, Laigle, Clotilde, Watkins, Aaron E., and Jackson, Ryan A.
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Astrophysics - Astrophysics of Galaxies - Abstract
How elliptical galaxies form is a key question in observational cosmology. While the formation of massive ellipticals is strongly linked to mergers, the low mass (Mstar < 10^9.5 MSun) regime remains less well explored. In particular, studying elliptical populations when they are blue, and therefore rapidly building stellar mass, offers strong constraints on their formation. Here, we study 108 blue, low-mass ellipticals (which have a median stellar mass of 10^8.7 MSun) at z < 0.3 in the COSMOS field. Visual inspection of extremely deep optical HSC images indicates that less than 3 per cent of these systems have visible tidal features, a factor of 2 less than the incidence of tidal features in a control sample of galaxies with the same distribution of stellar mass and redshift. This suggests that the star formation activity in these objects is not driven by mergers or interactions but by secular gas accretion. We combine accurate physical parameters from the COSMOS2020 catalog, with measurements of local density and the locations of galaxies in the cosmic web, to show that our blue ellipticals reside in low-density environments, further away from nodes and large-scale filaments than other galaxies. At similar stellar masses and environments, blue ellipticals outnumber their normal (red) counterparts by a factor of 2. Thus, these systems are likely progenitors of not only normal ellipticals at similar stellar mass but, given their high star formation rates, also of ellipticals at higher stellar masses. Secular gas accretion, therefore, likely plays a significant (and possibly dominant) role in the stellar assembly of elliptical galaxies in the low mass regime., Comment: Published in MNRAS
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- 2023
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321. A portable and high intensity 24 keV neutron source based on $^{124}$Sb-$^{9}$Be photoneutrons and an iron filter
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Biekert, A., Chang, C., Chaplinsky, L., Fink, C. W., Frey, W. D., Garcia-Sciveres, M., Guo, W., Hertel, S. A., Li, X., Lin, J., Lisovenko, M., Mahapatra, R., McKinsey, D. N., Mehrotra, S., Mirabolfathi, N., Patel, P. K., Penning, B., Pinckney, H. D., Reed, M., Romani, R. K., Sadoulet, B., Smith, R. J., Sorensen, P., Suerfu, B., Suzuki, A., Velan, V., Wang, G., Wang, Y., Watkins, S. L., and Williams, M. R.
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Physics - Instrumentation and Detectors ,Astrophysics - Instrumentation and Methods for Astrophysics ,High Energy Physics - Experiment - Abstract
A portable monoenergetic 24 keV neutron source based on the $^{124}$Sb-$^9$Be photoneutron reaction and an iron filter has been constructed and characterized. The coincidence of the neutron energy from SbBe and the low interaction cross-section with iron (mean free path up to 29 cm) makes pure iron specially suited to shield against gamma rays from $^{124}$Sb decays while letting through the neutrons. To increase the $^{124}$Sb activity and thus the neutron flux, a $>$1 GBq $^{124}$Sb source was produced by irradiating a natural Sb metal pellet with a high flux of thermal neutrons in a nuclear reactor. The design of the source shielding structure makes for easy transportation and deployment. A hydrogen gas proportional counter is used to characterize the neutrons emitted by the source and a NaI detector is used for gamma background characterization. At the exit opening of the neutron beam, the characterization determined the neutron flux in the energy range 20-25 keV to be 5.36$\pm$0.20 neutrons per cm$^2$ per second and the total gamma flux to be 213$\pm$6 gammas per cm$^2$ per second (numbers scaled to 1 GBq activity of the $^{124}$Sb source). A liquid scintillator detector is demonstrated to be sensitive to neutrons with incident kinetic energies from 8 to 17 keV, so it can be paired with the source as a backing detector for neutron scattering calibration experiments. This photoneutron source provides a good tool for in-situ low energy nuclear recoil calibration for dark matter experiments and coherent elastic neutrino-nucleus scattering experiments., Comment: 11 pages, 20 figures
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- 2023
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322. Quantifying the energetics of molecular superbubbles in PHANGS galaxies
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Watkins, E. J., Kreckel, K., Groves, B., Glover, S. C. O., Whitmore, B. C., Leroy, A. K., Schinnerer, E., Meidt, S. E., Egorov, O. V., Barnes, A. T., Lee, J. C., Bigiel, F., Boquien, M., Chandar, R., Chevance, M., Dale, D. A., Grasha, K., Klessen, R. S., Kruijssen, J. M. D., Larson, K. L., Li, J., Méndez-Delgado, J. E., Pessa, I., Saito, T., Sanchez-Blazquez, P., Sarbadhicary, S. K., Scheuermann, F., Thilker, D. A., and Williams, T. G.
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Astrophysics - Astrophysics of Galaxies - Abstract
Star formation and stellar feedback are interlinked processes that redistribute energy and matter throughout galaxies. When young, massive stars form in spatially clustered environments, they create pockets of expanding gas termed superbubbles. As these processes play a critical role in shaping galaxy discs and regulating the baryon cycle, measuring the properties of superbubbles provides important input for galaxy evolution models. With wide coverage and high angular resolution (50-150 pc) of the PHANGS-ALMA $^{12}$CO (2-1) survey, we can now resolve and identify a statistically representative number of superbubbles with molecular gas in nearby galaxies. We identify superbubbles by requiring spatial correspondence between shells in CO with stellar populations identified in PHANGS-HST, and combine the properties of the stellar populations with CO to constrain feedback models and quantify their energetics. We visually identify 325 cavities across 18 PHANGS-ALMA galaxies, 88 of which have clear superbubble signatures (unbroken shells, central clusters, kinematic signatures of expansion). We measure their radii and expansion velocities using CO to dynamically derive their ages and the mechanical power driving the bubbles, which we use to compute the expected properties of the parent stellar populations driving the bubbles. We find consistency between the predicted and derived stellar ages and masses of the stellar populations if we use a supernova blast wave model that injects energy with a coupling efficiency of 10%, whereas continuous models fail to explain stellar ages we measure. Not only does this confirm molecular gas accurately traces superbubble properties, but it also provides key observational constraints for superbubble models. We also find evidence that the bubbles sweep up gas as they expand and speculate that these sites have the potential to host new generations of stars., Comment: 21 pages, 15 figures, 3 tables. Accepted to A&A. Abstract abridged for arXiv
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- 2023
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323. PHANGS-MUSE: Detection and Bayesian classification of ~40000 ionised nebulae in nearby spiral galaxies
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Congiu, Enrico, Blanc, Guillermo A., Belfiore, Francesco, Santoro, Francesco, Scheuermann, Fabian, Kreckel, Kathryn, Emsellem, Eric, Groves, Brent, Pan, Hsi-An, Bigiel, Frank, Dale, Daniel A., Glover, Simon C. O., Grasha, Kathryn, Egorov, Oleg V., Leroy, Adam, Schinnerer, Eva, Watkins, Elizabeth J., and Williams, Thomas G.
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Astrophysics - Astrophysics of Galaxies - Abstract
In this work, we present a new catalogue of >40000 ionised nebulae distributed across the 19 galaxies observed by the PHANGS-MUSE survey. The nebulae have been classified using a new model-comparison-based algorithm that exploits the odds ratio principle to assign a probabilistic classification to each nebula in the sample. The resulting catalogue is the largest catalogue containing complete spectral and spatial information for a variety of ionised nebulae available so far in the literature. We developed this new algorithm to address some of the limitations of the traditional classification criteria, such as their binarity, the sharpness of the involved limits, and the limited amount of data they rely on for the classification. The analysis of the catalogue shows that the algorithm performs well when selecting H II regions. We can recover their luminosity function, and its properties are in line with what is available in the literature. We also identify a rather significant population of shock-ionised regions (mostly composed of supernova remnants), an order of magnitude larger than any other homogeneous catalogue of supernova remnants currently available in the literature. The number of supernova remnants we identify per galaxy is in line with results in our Galaxy and other very nearby sources. However, limitations in the source detection algorithm result in an incomplete sample of planetary nebulae, even though their classification seems robust. Finally, we demonstrate how applying a correction for the contribution of the diffuse ionised gas to the nebulae's spectra is essential to obtain a robust classification of the objects and how a correct measurement of the extinction using DIG-corrected line fluxes prompts the use of a higher theoretical Ha/Hb ratio (3.03) than what is commonly used when recovering the E(B-V) via the Balmer decrement technique in massive star-forming galaxies., Comment: 58 pages, 46 figures. Paper accepted for pubblications in A&A. The catalogue will be available via the CDS or at the following link: http://dx.doi.org/10.11570/23.0006
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- 2023
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324. Analyzing the Large-Scale Bulk Flow using CosmicFlows4: Increasing Tension with the Standard Cosmological Model
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Watkins, Richard, Allen, Trey, Bradford, Collin James, Ramon Jr., Albert, Walker, Alexandra, Feldman, Hume A., Cionitti, Rachel, Al-Shorman, Yara, Kourkchi, Ehsan, and Tully, R. Brent
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
We present an estimate of the bulk flow in a volume of radii $150-200h^{-1}$Mpc using the minimum variance (MV) method with data from the CosmicFlows-4 (CF4) catalog. The addition of new data in the CF4 has resulted in an increase in the estimate of the bulk flow in a sphere of radius $150h^{-1}$Mpc relative to the CosmicFlows-3 (CF3). This bulk flow has less than a $0.03\%$ chance of occurring in the Standard Cosmological Model ($\Lambda$CDM) with cosmic microwave background derived parameters. Given that the CF4 is deeper than the CF3, we were able to use the CF4 to accurately estimate the bulk flow on scales of $200h^{-1}$Mpc (equivalent to 266 Mpc for Hubble constant $H_o=75$ km/s/Mpc) for the first time. This bulk flow is in even greater tension with the Standard Model, having less than $0.003\%$ probability of occurring. To estimate the bulk flow accurately, we introduce a novel method to calculate distances and velocities from distance moduli that is unbiased and accurate at all distances. Our results are completely independent of the value of $H_o$., Comment: 9 pages, 8 figures, 1 table
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- 2023
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325. Efficient Graph Field Integrators Meet Point Clouds
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Choromanski, Krzysztof, Sehanobish, Arijit, Lin, Han, Zhao, Yunfan, Berger, Eli, Parshakova, Tetiana, Pan, Alvin, Watkins, David, Zhang, Tianyi, Likhosherstov, Valerii, Chowdhury, Somnath Basu Roy, Dubey, Avinava, Jain, Deepali, Sarlos, Tamas, Chaturvedi, Snigdha, and Weller, Adrian
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Computer Science - Machine Learning - Abstract
We present two new classes of algorithms for efficient field integration on graphs encoding point clouds. The first class, SeparatorFactorization(SF), leverages the bounded genus of point cloud mesh graphs, while the second class, RFDiffusion(RFD), uses popular epsilon-nearest-neighbor graph representations for point clouds. Both can be viewed as providing the functionality of Fast Multipole Methods (FMMs), which have had a tremendous impact on efficient integration, but for non-Euclidean spaces. We focus on geometries induced by distributions of walk lengths between points (e.g., shortest-path distance). We provide an extensive theoretical analysis of our algorithms, obtaining new results in structural graph theory as a byproduct. We also perform exhaustive empirical evaluation, including on-surface interpolation for rigid and deformable objects (particularly for mesh-dynamics modeling), Wasserstein distance computations for point clouds, and the Gromov-Wasserstein variant.
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- 2023
326. Clinical Research Network: JHCRN Infrastructure and Lessons Learned
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Rahul Kashyap, Gayane Yenokyan, Robert Joyner, Melissa Gerstenhaber, Mary Alderfer, Erika Siegrist, Joan Moore, Channing J. Paller, Hanan Aboumatar, James J. Potter, Stanley Watkins Jr, John E. Niederhuber, Daniel E. Ford, and Adrian Dobs
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clinical research network ,collaboration ,infrastructure ,investigators ,Therapeutics. Pharmacology ,RM1-950 ,Public aspects of medicine ,RA1-1270 - Abstract
ABSTRACT Clinical research studies are becoming increasingly complex resulting in compounded work burden and longer study cycle times, each fueling runaway costs. The impact of protocol complexity often results in inadequate recruitment and insufficient sample sizes, which challenges validity and generalizability. Understanding the need to provide an alternative model to engage researchers and sponsors and bringing clinical research opportunities to the broader community, clinical research networks (CRN) have been proposed and initiated in the United States and other parts of the world. We report on the Johns Hopkins Clinical Research Network (JHCRN), established in 2009 as a multi‐disease research collaboration between the academic medical centers and community hospitals/health systems. We have discussed vision, governance, infrastructure, participating hospitals' characteristics, and lessons learned in creating this partnership. Designed to leverage organized patient communities, community‐based investigators, and academic researchers, the JHCRN provides expedited research across nine health systems in the mid‐Atlantic region. With one IRB of record, a centralized contracting office, and a pool of dedicated network coordinators, it facilitates research partnerships to expand research collaborations among the differing sizes and types of hospitals/health systems in a region. As of August 2024, total 81 studies‐clinical trials, cohort studies, and comparative effectiveness research have been conducted, with funding from the NIH, private foundations, and industry. The JHCRN experience has enhanced understanding of the complexity of participating sites and associated ambulatory practices. In conclusion, the CRN, as an academic–community partnership, provides an infrastructure for multiple disease studies, shared risk, and increased investigator and volunteer engagement.
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- 2025
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327. Robust, fully-automated assessment of cerebral perivascular spaces and white matter lesions: a multicentre MRI longitudinal study of their evolution and association with risk of dementia and accelerated brain atrophyResearch in context
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Giuseppe Barisano, Michael Iv, Jeiran Choupan, Melanie Hayden-Gephart, Michael Weiner, Paul Aisen, Ronald Petersen, Clifford R. Jack, William Jagust, John Q. Trojanowki, Arthur W. Toga, Laurel Beckett, Robert C. Green, Andrew J. Saykin, John Morris, Leslie M. Shaw, Enchi Liu, Tom Montine, Ronald G. Thomas, Michael Donohue, Sarah Walter, Devon Gessert, Tamie Sather, Gus Jiminez, Danielle Harvey, Matthew Bernstein, Nick Fox, Paul Thompson, Norbert Schuff, Charles DeCarli, Bret Borowski, Jeff Gunter, Matt Senjem, Prashanthi Vemuri, David Jones, Kejal Kantarci, Chad Ward, Robert A. Koeppe, Norm Foster, Eric M. Reiman, Kewei Chen, Chet Mathis, Susan Landau, Nigel J. Cairns, Erin Householder, Lisa Taylor Reinwald, Virginia Lee, Magdalena Korecka, Michal Figurski, Karen Crawford, Scott Neu, Tatiana M. Foroud, Steven Potkin, Li Shen, Faber Kelley, Sungeun Kim, Kwangsik Nho, Zaven Kachaturian, Richard Frank, Peter J. Snyder, Susan Molchan, Jeffrey Kaye, Joseph Quinn, Betty Lind, Raina Carter, Sara Dolen, Lon S. Schneider, Sonia Pawluczyk, Mauricio Beccera, Liberty Teodoro, Bryan M. Spann, James Brewer, Helen Vanderswag, Adam Fleisher, Judith L. Heidebrink, Joanne L. Lord, Sara S. Mason, Colleen S. Albers, David Knopman, Kris Johnson, Rachelle S. Doody, Javier Villanueva Meyer, Munir Chowdhury, Susan Rountree, Mimi Dang, Yaakov Stern, Lawrence S. Honig, Karen L. Bell, Beau Ances, John C. Morris, Maria Carroll, Sue Leon, Mark A. Mintun, Stacy Schneider, Angela Oliver, Daniel Marson, Randall Griffith, David Clark, David Geld-macher, John Brockington, Erik Roberson, Hillel Grossman, Effie Mitsis, Leyla deToledo-Morrell, Raj C. Shah, Ranjan Duara, Daniel Varon, Maria T. Greig, Peggy Roberts, Marilyn Albert, Chiadi Onyike, Daniel D’Agostino, Stephanie Kielb, James E. Galvin, Dana M. Pogorelec, Brittany Cerbone, Christina A. Michel, Henry Rusinek, Mony J. de Leon, Lidia Glodzik, Susan De Santi, P. Murali Doraiswamy, Jeffrey R. Petrella, Terence Z. Wong, Steven E. Arnold, Jason H. Karlawish, David Wolk, Charles D. Smith, Greg Jicha, Peter Hardy, Partha Sinha, Elizabeth Oates, Gary Conrad, Oscar L. Lopez, MaryAnn Oakley, Donna M. Simpson, Anton P. Porsteinsson, Bonnie S. Goldstein, Kim Martin, Kelly M. Makino, M. Saleem Ismail, Connie Brand, Ruth A. Mulnard, Gaby Thai, Catherine Mc Adams Ortiz, Kyle Womack, Dana Mathews, Mary Quiceno, Ramon Diaz Arrastia, Richard King, Myron Weiner, Kristen Martin Cook, Michael DeVous, Allan I. Levey, James J. Lah, Janet S. Cellar, Jeffrey M. Burns, Heather S. Anderson, Russell H. Swerdlow, Liana Apostolova, Kathleen Tingus, Ellen Woo, Daniel H.S. Silverman, Po H. Lu, George Bartzokis, Neill R. Graff Radford, Francine Parfitt, Tracy Kendall, Heather Johnson, Martin R. Farlow, AnnMarie Hake, Brandy R. Matthews, Scott Herring, Cynthia Hunt, Christopher H. van Dyck, Richard E. Carson, Martha G. MacAvoy, Howard Chertkow, Howard Bergman, Chris Hosein, Sandra Black, Bojana Stefanovic, Curtis Caldwell, Ging-Yuek Robin Hsiung, Howard Feldman, Benita Mudge, Michele Assaly, Andrew Kertesz, John Rogers, Dick Trost, Charles Bernick, Donna Munic, Diana Kerwin, Marek Marsel Mesulam, Kristine Lipowski, Chuang Kuo Wu, Nancy Johnson, Carl Sadowsky, Walter Martinez, Teresa Villena, Raymond Scott Turner, Kathleen Johnson, Brigid Reynolds, Reisa A. Sperling, Keith A. Johnson, Gad Marshall, Meghan Frey, Jerome Yesavage, Joy L. Taylor, Barton Lane, Allyson Rosen, Jared Tinklenberg, Marwan N. Sabbagh, Christine M. Belden, Sandra A. Jacobson, Sherye A. Sirrel, Neil Kowall, Ronald Killiany, Andrew E. Budson, Alexander Norbash, Patricia Lynn Johnson, Thomas O. Obisesan, Saba Wolday, Joanne Allard, Alan Lerner, Paula Ogrocki, Leon Hudson, Evan Fletcher, Owen Carmichael, John Olichney, Smita Kittur, Michael Borrie, T.Y. Lee, Rob Bartha, Sterling Johnson, Sanjay Asthana, Cynthia M. Carlsson, Steven G. Potkin, Adrian Preda, Dana Nguyen, Pierre Tariot, Stephanie Reeder, Vernice Bates, Horacio Capote, Michelle Rainka, Douglas W. Scharre, Maria Kataki, Anahita Adeli, Earl A. Zimmerman, Dzintra Celmins, Alice D. Brown, Godfrey D. Pearlson, Karen Blank, Karen Anderson, Robert B. Santulli, Tamar J. Kitzmiller, Eben S. Schwartz, Kaycee M. Sink, Jeff D. Williamson, Pradeep Garg, Franklin Watkins, Brian R. Ott, Henry Querfurth, Geoffrey Tremont, Stephen Salloway, Paul Malloy, Stephen Correia, Howard J. Rosen, Bruce L. Miller, Jacobo Mintzer, Kenneth Spicer, David Bachman, Elizabeth Finger, Stephen Pasternak, Irina Rachinsky, Dick Drost, Nunzio Pomara, Raymundo Hernando, Antero Sarrael, Susan K. Schultz, Laura L. Boles Ponto, Hyungsub Shim, Karen Elizabeth Smith, Norman Relkin, Gloria Chaing, Lisa Raudin, Amanda Smith, Kristin Fargher, and Balebail Ashok Raj
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Perivascular spaces ,White matter lesions ,Small vessel disease ,Dementia ,Alzheimer’s disease ,Glymphatic system ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Perivascular spaces (PVS) on brain MRI are surrogates for small parenchymal blood vessels and their perivascular compartment, and may relate to brain health. However, it is unknown whether PVS can predict dementia risk and brain atrophy trajectories in participants without dementia, as longitudinal studies on PVS are scarce and current methods for PVS assessment lack robustness and inter-scanner reproducibility. Methods: We developed a robust algorithm to automatically assess PVS count and size on clinical MRI, and investigated 1) their relationship with dementia risk and brain atrophy in participants without dementia, 2) their longitudinal evolution, and 3) their potential use as a screening tool in simulated clinical trials. We analysed 46,478 clinical measurements of cognitive functioning and 20,845 brain MRI scans from 10,004 participants (71.1 ± 9.7 years-old, 56.6% women) from three publicly available observational studies on ageing and dementia (the Alzheimer’s Disease Neuroimaging Initiative, the National Alzheimer’s Coordinating Centre database, and the Open Access Series of Imaging Studies). Clinical and MRI data collected between 2004 and 2022 were analysed with consistent methods, controlling for confounding factors, and combined using mixed-effects models. Findings: Our fully-automated method for PVS assessment showed excellent inter-scanner reproducibility (intraclass correlation coefficients >0.8). Fewer PVS and larger PVS diameter at baseline predicted higher dementia risk and accelerated brain atrophy. Longitudinal trajectories of PVS markers differed significantly in participants without dementia who converted to dementia compared with non-converters. In simulated placebo-controlled trials for treatments targeting cognitive decline, screening out participants at low risk of dementia based on our PVS markers enhanced the power of the trial independently of Alzheimer’s disease biomarkers. Interpretation: These robust cerebrovascular markers predict dementia risk and brain atrophy and may improve risk-stratification of patients, potentially reducing cost and increasing throughput of clinical trials to combat dementia. Funding: US National Institutes of Health.
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- 2025
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328. Associations of prenatal urinary melamine, melamine analogues, and aromatic amines with gestational duration and fetal growth in the ECHO Cohort
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Giehae Choi, Xiaoshuang Xun, Deborah H. Bennett, John D. Meeker, Rachel Morello-Frosch, Sheela Sathyanarayana, Susan L Schantz, Leonardo Trasande, Deborah Watkins, Edo D. Pellizzari, Wenlong Li, Kurunthachalam Kannan, Tracey J. Woodruff, and Jessie P. Buckley
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Melamine ,Cyanuric acid ,Aromatic amines ,Gestational age ,Birthweight ,Preterm birth ,Environmental sciences ,GE1-350 - Abstract
Melamine, its analogues, and aromatic amines (AAs) were commonly detected in a previous study of pregnant women in the Environmental influences on Child Health Outcomes (ECHO) Cohort. While these chemicals have identified toxicities, little is known about their influences on fetal development. We measured these chemicals in gestational urine samples in 3 ECHO cohort sites to assess associations with birth outcomes (n = 1,231). We estimated beta coefficients and 95% confidence intervals (CIs) using adjusted linear mixed models with continuous dilution-standardized concentrations (log2 transformed and scaled by interquartile range, IQR) or binary indicators for detection. As secondary analyses, we repeated analyses using categorical outcomes. Forty-one of 45 analytes were detected in at least one sample, with > 95 % detection of melamine, cyanuric acid, ammelide, and aniline. Higher melamine concentration was associated with longer gestational age (β^ per IQR increase of log2-transformed: 0.082 [95 % CI: −0.012, 0.177]; 2nd vs 1st tertile: 0.173 [-0.048, 0.394]; 3rd vs 1st tertile: 0.186 [-0.035, 0.407]). Similarly in secondary analyses using categorical outcomes, an IQR increase in log2(melamine) was associated with 1.22 [0.99, 1.50] higher odds of post-term (>40 & ≤42 weeks) as compared to full-term (≥38 & ≤40 weeks). Several AAs were associated with birthweight and gestational length, with the direction of associations varying by AA. Some stronger associations were observed in females. Our findings suggest melamine and its analogs and AAs may influence gestational length and birthweight.
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- 2025
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329. Therapeutic effects of platelet-derived extracellular vesicles on viral myocarditis correlate with biomolecular content
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Danielle J. Beetler, Presley Giresi, Damian N. Di Florio, Jessica J. Fliess, Elizabeth J. McCabe, Molly M. Watkins, Vivian Xu, Matthew E. Auda, Katelyn A. Bruno, Emily R. Whelan, Stephen P. C. Kocsis, Brandy H. Edenfield, Sierra A. Walker, Logan P. Macomb, Kevin C. Keegan, Angita Jain, Andrea C. Morales-Lara, Isha Chekuri, Anneliese R. Hill, Houssam Farres, Joy Wolfram, Atta Behfar, Paul G. Stalboerger, Andre Terzic, Leslie T. Cooper, and DeLisa Fairweather
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coxsackievirus B3 ,innate immunity ,complement ,TLR4 ,sex differences ,microRNA ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionExtracellular vesicles (EVs) can potently inhibit inflammation yet there is a lack of understanding about the impact of donor characteristics on the efficacy of EVs. The goal of this study was to determine whether the sex and age of donor platelet-derived EVs (PEV) affected their ability to inhibit viral myocarditis.MethodsPEV, isolated from men and women of all ages, was compared to PEV obtained from women under 50 years of age, which we termed premenopausal PEV (pmPEV). Because of the protective effect of estrogen against myocardial inflammation, we hypothesized that pmPEV would be more effective than PEV at inhibiting myocarditis. We injected PEV, pmPEV, or vehicle control in a mouse model of viral myocarditis and examined histology, gene expression, protein profiles, and performed proteome and microRNA (miR) sequencing of EVs.ResultsWe found that both PEV and pmPEV significantly inhibited myocarditis; however, PEV was more effective, which was confirmed by a greater reduction of inflammatory cells and proinflammatory and profibrotic markers determined using gene expression and immunohistochemistry. Proteome and miR sequencing of EVs revealed that PEV miRs specifically targeted antiviral, Toll-like receptor (TLR)4, and inflammasome pathways known to contribute to myocarditis while pmPEV contained general immunoregulatory miRs.DiscussionThese differences in EV content corresponded to the differing anti-inflammatory effects of the two types of EVs on viral myocarditis.
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- 2025
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330. Antimicrobial prescribing practices for enteric bacterial infections in an integrated health care system, Wisconsin, 2004–2017
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Scott C. Olson, Louise K. Francois Watkins, Elaine Scallan Walter, Cindy R. Friedman, and Huong Q. Nguyen
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Anti-bacterial agents ,Gastroenteritis ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Few studies have evaluated antibiotic prescribing practices for bacterial enteric infections. Unnecessary antibiotics can result in adverse events and contribute to the emergence of antimicrobial resistance. We assessed treatment practices among patients with laboratory-confirmed enteric infections in a regional healthcare system in Wisconsin, USA. Methods: We used electronic health records to identify patients with laboratory-confirmed nontyphoidal Salmonella, Shigella, Shiga toxin-producing Escherichia coli (STEC), and Campylobacter infections during 2004–2017. Relevant clinical data, including diagnosis codes for chronic conditions and receipt of immunosuppressive medications and antibiotic prescriptions, were extracted. We defined appropriate treatment based on pathogen, patient characteristics, and practice guidelines for the study period. Results: We identified 2064 patients infected with Campylobacter (1251; 61 %), Salmonella (564; 27 %), STEC (199; 10 %), or Shigella (50; 2 %). Overall, 425 (20 %) patients were immunocompromised, ranging from 17 % with Salmonella to 46 % with STEC. There were 220 (11 %) hospitalizations. Antibiotics were prescribed most frequently for Campylobacter (53 %), followed by Shigella (46 %) and Salmonella (44 %) infections. Among those prescribed antibiotics, prescriptions were appropriate for 71 % of Campylobacter, 100 % of Shigella, and 81 % of Salmonella infections. Antibiotics were prescribed for 24 % of STEC infections, despite recommendations against use. Guideline adherence generally decreased with age, except for Shigella infections, where adherence was highest for adults ≥ 50 years. Conclusions: Antibiotic prescribing for laboratory-confirmed enteric infections was usually appropriate but did not follow practice guidelines in a substantial minority of cases, presenting opportunity for improvement. Antibiotic stewardship initiatives should address acute bacterial gastrointestinal infections in addition to other common infections.
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- 2025
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331. Eliciting and Measuring Toxic Bias in Human-to-Machine Interactions in Large Language Models.
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Kyle Stein, Alexander Harvey, Aylanna Lopez, Uzma Taj, Shari Watkins, and Lanier A. Watkins
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- 2024
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332. Otolaryngology Head and Neck Surgery
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Watkins, Mariel O., Fayson, Shannon, Truesdale, Carl, Watkins, Paula W., Smith, Connor M., Brown, David J., and Deville Jr., Curtiland, editor
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- 2024
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333. Evacuation from port Moresby
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Watkins, Peter
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- 2024
334. Clinical remission among severe asthmatics on monoclonal antibody therapy: real-world outcomes at 2 years
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Fred Fyles, Rachel Burton, Amy Nuttall, Hannah Joplin, Laura Watkins, and Hassan Burhan
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Medicine - Published
- 2024
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335. Monocultural Authority and Imperialist Extraction in the Primary-Secondary Source Division
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Alexander Watkins and Kathryn Randall
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evaluating information ,Indigenous knowledges ,information literacy ,knowledge organization ,primary source literacy ,ways of knowing ,Bibliography. Library science. Information resources - Abstract
This paper examines one way that colonial logic is embedded in western academic practices. It argues that the conventional dichotomy between primary and secondary sources in the humanities and social sciences reflects western monocultural hegemony in its application to non-western knowledges. In these fields, primary sources are treated as objects, analysed as evidence, and used as data, while secondary sources get to act as subjects and are engaged with as experts. This paper identifies a problematic dynamic where Indigenous authorities whose expertise does not align with western academic norms are categorised and used as primary sources, thereby stripping them of their agency and subjectivity. Their knowledge is extracted, commodified, and appropriated for the benefit of the west. Further, the paper critiques the role of librarians and archivists in perpetuating this colonial logic through their instruction practices and professional frameworks and standards, especially around primary source literacy and evaluating authority. These practices promulgate monocultural tools through which knowledge is extracted and evaluated. This paper calls on librarians to critically assess their role in maintaining colonial structures that continue to marginalise Indigenous Knowledge.
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- 2024
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336. Psychological interventions for weight reduction and sustained weight reduction in adults with overweight and obesity: a scoping review
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Caroline Watkins, Emma P Bray, Cath Harris, Jennifer A Kuroski, Oliver Hamer, Amy Blundell, and Emma Schneider
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Medicine - Abstract
Introduction Overweight and obesity are growing public health problems worldwide. Both diet and physical activity have been the primary interventions for weight reduction over the past decade. With increasing rates of overweight and obesity, it is evident that a primary focus on diet and exercise has not resulted in sustained obesity reduction within the global population. There is now a case to explore other weight management strategies such as psychological therapies. However, there is a dearth of literature that has mapped the types of psychological interventions and the characteristics of these interventions as a means of achieving weight reduction.Objectives The key objectives focused on mapping the types and characteristics of psychological interventions versus usual care for weight reduction and sustained weight reduction in adults with overweight or obesity. The study followed the scoping review methodology by Arksey and O’Malley and was reported in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews guidelines.Eligibility criteria Intervention studies were included if participants were 18 years and over, classified as overweight or obese (body mass index ≥25 kg/m2) and had received a psychological therapy intervention. Studies were excluded if they included a comparison with other active lifestyle interventions (unless classified as usual care), were not available in English, were not full-text articles or were non-peer-reviewed articles.Sources of evidence Six electronic databases were searched from inception to April 2023 to identify relevant articles.Charting methods The study employed a systematic charting method and narrative synthesis to organise and synthesise the data.Results A total of 31 studies met the eligibility criteria and were included in the review. 13 unique psychological interventions for weight reduction in adults with overweight or obesity were identified, with cognitive–behavioural therapy and motivational interviewing being the most common. Eight types of usual care were identified, which largely included education and training on nutrition and physical activity. Gaps in the current research were also identified.Conclusion The findings highlighted several gaps within the existing literature, largely due to a lack of evidence relating to adults with low socioeconomic status, non-white participants, individuals under 40 years of age and the integration of digital health technologies.
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- 2024
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337. Investigation of physicochemical drivers directing ionic liquid assembly on polymeric nanoparticles
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Sara X. Edgecomb, Christine M. Hamadani, Angela Roberts, George Taylor, Anya Merrell, Ember Suh, Mahesh Loku Yaddehige, Indika Chandrasiri, Davita L. Watkins, and Eden E. L. Tanner
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diblock co‐polymers ,intermolecular interactions ,ionic liquids ,LDBCs ,nanoassembly ,nanoparticles ,Industrial electrochemistry ,TP250-261 ,Chemistry ,QD1-999 - Abstract
Abstract Ionic liquids (ILs) have emerged as promising biomaterials for enhancing drug delivery by functionalizing polymeric nanoparticles (NPs). Despite the biocompatibility and biofunctionalization they confer upon the NPs, little is understood regarding the degree in which non‐covalent interactions, particularly hydrogen bonding and electrostatic interactions, govern IL‐NP supramolecular assembly. Herein, we use salt (0‐1 M sodium sulfate) and acid (0.25 M hydrochloric acid at pH 4.8) titrations to disrupt IL‐functionalized nanoassembly for four different polymeric platforms during synthesis. Through quantitative 1H‐nuclear magnetic resonance spectroscopy and dynamic light scattering, we demonstrate that the driving force of choline trans‐2‐hexenoate (CA2HA 1:1) IL assembly varies with either hydrogen bonding or electrostatics dominating, depending on the structure of the polymeric platform. In particular, the covalently bound or branched 50:50 block co‐polymer systems (diblock PEG‐PLGA [DPP] and polycaprolactone [PCl]‐poly[amidoamine] amine‐based linear‐dendritic block co‐polymer) are predominantly affected by hydrogen bonding disruption. In contrast, a purely linear block co‐polymer system (carboxylic acid terminated poly[lactic‐co‐glycolic acid]) necessitates both electrostatics and hydrogen bonding to assemble with IL and a two‐component electrostatically bound system (electrostatic PEG‐PLGA [EPP]) favors hydrogen‐bonding with electrostatics serving as a secondary role.
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- 2024
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338. Corrigendum to ‘There is no ‘I’ in team but there may be a PA’ [Future Healthcare Journal volume 6 (October 2019) 177–180]
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Jeannie Watkins, Kate Straughton, and Natalie King
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Medicine - Published
- 2024
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339. NPS: Challenges and Future Outlooks – the Analytical Toxicologists’ Points of View
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V. Abbate, M. Vigar, C. Watkins, J. Clifford, and M. Jones
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Pharmacy and materia medica ,RS1-441 - Abstract
In recent years, the global market for novel psychoactive substances (NPS) has continued to grow rapidly, presenting significant challenges for analytical toxicologists. Indeed, the constant emergence and the evolving nature of NPS requires their rapid detection and identification; studies on their pharmacokinetics; and ideally the prediction of future analogues to try and stay ahead of the competition with illicit NPS manufacturers. This presentation will provide an overview, from the analytical toxicologists’ point of view, of the current challenges and future outlooks for detecting, identifying, and predicting NPS. It will explore both recent efforts in my group, and what we plan to do in the near future to tackle the emergence of NPS using multidisciplinary approaches. I will discuss the importance of both emerging analytical tools and techniques, including portable instruments, for the rapid and on-site detection and identification of NPS. Finally, I will briefly mention how computational methods could simplify substance identification and aid in predicting the emergence of NPS. It is hoped that some of the described approaches will have positive implications for public health and safety and will create opportunities to promote exchange between various stakeholders, including basic scientists/toxicologists, clinicians, and policy makers.
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- 2024
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340. New Drug Trends across Welsh Prisons: Evaluating the Role of People with Lived Experience of Substance Misuse and Supporting their Recovery
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M. Vigar, C. Watkins, J. Clifford, and M. Jones
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Pharmacy and materia medica ,RS1-441 - Abstract
Introduction: This presentation will cover two areas of work. Firstly, we will provide a summary of the current trends of substance misuse across prisons in South Wales, where novel psychoactive substances continue to be widely used, including the market value for these substances in the prison system. The second element of the presentation will share the findings of our research in the attempt to better understand the lived experience of those affected and provide a more informed support and intervention to other prisoners. Methods: The analysis of trends across Welsh prisons will utilise data from the following sources: Mandatory Drug Test results, drug testing sample data from WEDINOS, prison data on drug finds, intelligence reports and substance misuse observation records being opened. The research into prisoner peer mentoring will utilise standardised interviews with both prisoners with lived experience providing support, and prisoners receiving support. The standardised interviews will aim to identify consistent themes, proposals for good practice and wider mainstream implementation. Results: Early data shows a significant prevalence of Synthetic Cannabinoids and the emergence of new trends related to the consumption of Synthetic Opioids. Conclusions: More attention should be paid to the diffusion on NPS in prison settings. Full results of our investigation will be available and be discussed at the time of the conference.
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- 2024
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341. Using electromagnetic induction to inform precision turfgrass management strategies in sand‐capped golf course fairways
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Dallas M. Williams, Chase M. Straw, A. Peyton Smith, Kathryn L. Watkins, Sarah G. Hong, Weston F. Floyd, and Briana M. Wyatt
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Agriculture ,Environmental sciences ,GE1-350 - Abstract
Abstract To meet the turfgrass standards that players expect, golf course superintendents rely on intense irrigation, fertilization, and cultivation programs. However, the overapplication of irrigation water and fertilizer has been shown to have negative effects on water quality. Precision turfgrass management (PTM) is an emerging area of interest as more golf course superintendents are looking to increase input efficiency while simultaneously reducing water and fertilizer input costs, as well as environmental impacts. Our objectives were to (1) use electromagnetic induction (EMI) to determine the spatial variability of apparent electrical conductivity (EC) in sand‐capped fairways and (2) correlate EC to measured soil and turfgrass characteristics to determine the applicability of mapping EC for PTM. Soil samples and EC data were collected in spring 2021 on four sand‐capped fairways from two golf courses (one hybrid bermudagrass and one zoysiagrass) belonging to the same facility in southeast Texas. Apparent EC was found to be positively and significantly correlated with soil volumetric water content (VWC, 0.40 0.62) and turfgrass normalized difference vegetation index (NDVI; 0.21 0.46) in three of four fairways, while EC was negatively and significantly correlated with penetration resistance (PR, −0.29 −0.48) in two of four fairways studied. The strengths of these relationships were corroborated by strong visual similarities when comparing spatial maps of EC with those of VWC, NDVI, and PR, indicating that EMI‐based EC data have potential for use in delineating site‐specific management zones for water and fertilizer applications, as well as targeted aeration.
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- 2024
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342. Efficacy and pharmacodynamic effect of anti-CD73 and anti-PD-L1 monoclonal antibodies in combination with cytotoxic therapy: observations from mouse tumor models
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Brajesh P. Kaistha, Gozde Kar, Andreas Dannhorn, Amanda Watkins, Grace Opoku-Ansah, Kristina Ilieva, Stefanie Mullins, Judith Anderton, Elena Galvani, Fabien Garcon, Jean-Martin Lapointe, Lee Brown, James Hair, Tim Slidel, Nadia Luheshi, Kelli Ryan, Elizabeth Hardaker, Simon Dovedi, Rakesh Kumar, Robert W. Wilkinson, Scott A. Hammond, and Jim Eyles
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Anti-CD73 ,Oleclumab ,immunotherapy ,chemotherapy ,adenosine ,immune-checkpoint blockade (ICB) ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
CD73 is a cell surface 5’nucleotidase (NT5E) and key node in the catabolic process generating immunosuppressive adenosine in cancer. Using a murine monoclonal antibody surrogate of Oleclumab, we investigated the effect of CD73 inhibition in concert with cytotoxic therapies (chemotherapies as well as fractionated radiotherapy) and PD-L1 blockade. Our results highlight improved survival in syngeneic tumor models of colorectal cancer (CT26 and MC38) and sarcoma (MCA205). This therapeutic outcome was in part driven by cytotoxic CD8 T-cells, as evidenced by the detrimental effect of CD8 depleting antibody treatment of MCA205 tumor bearing mice treated with anti-CD73, anti-PD-L1 and 5-Fluorouracil+Oxaliplatin (5FU+OHP). We hypothesize that the improved responses are tumor microenvironment (TME)-driven, as suggested by the lack of anti-CD73 enhanced cytopathic effects mediated by 5FU+OHP on cell lines in vitro. Pharmacodynamic analysis, using imaging mass cytometry and RNA-sequencing, revealed noteworthy changes in specific cell populations like cytotoxic T cells, B cells and NK cells in the CT26 TME. Transcriptomic analysis highlighted treatment-related modulation of gene profiles associated with an immune response, NK and T-cell activation, T cell receptor signaling and interferon (types 1 & 2) pathways. Inclusion of comparator groups representing the various components of the combination allowed deconvolution of contribution of the individual therapeutic elements; highlighting specific effects mediated by the anti-CD73 antibody with respect to immune-cell representation, chemotaxis and myeloid biology. These pre-clinical data reflect complementarity of adenosine blockade with cytotoxic therapy, and T-cell checkpoint inhibition, and provides new mechanistic insights in support of combination therapy.
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- 2024
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343. Knowledge, experiences, and perceptions of medications for opioid use disorder among Black Kentuckians
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Paris B. Wheeler, Brittany Miller-Roenigk, Jasmine Jester, and Danelle Stevens-Watkins
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Medications for opioid use disorder ,Black Americans ,nonmedical prescription opioid use ,Medicine - Abstract
AbstractBackground Opioid overdoses have continued to increase at higher rates among Black Americans compared to people from other racial groups. Despite demonstrated effectiveness of MOUD in reducing risk of opioid overdose, Black Americans face decreased access to and uptake of MOUD. The current study aimed to examine the knowledge, perceptions, and experiences with MOUD among a sample of Black adults who use prescription opioids nonmedically in order to inform tailored efforts to improve MOUD uptake.Methods Data were derived from a larger study assessing cultural and structural influences on drug use and drug treatment among people who use prescription opioids nonmedically. Semi-structured qualitative interviews were conducted with 34 Black men and women across four generational cohorts: born 1955–1969; 1970–1979; 1980–1994; and 1995–2001. Participant responses were analyzed using thematic analysis.Results Nearly half of participants (44.1%) reported no knowledge or experience with MOUD. Among participants who had any knowledge about MOUD, four major themes regarding their perceptions emerged: MOUD Helps with Recovery; Not Needed for Level of Drug Use; Side Effects and Withdrawal; Equivalence with Illicit Drug Use. The majority reported negative perceptions of MOUD (52.6%), and the youngest cohort (born 1995–2001) had a higher proportion of negative perceptions (80%) relative to other age cohorts (born 1980–1994: 50%; 1970–1979: 75%; 1955–1969: 16.6%).Discussion Findings indicate a significant knowledge gap and clear points of intervention for improving MOUD uptake. Interventions to improve communication of health information in ways that are culturally relevant and tailored by age group can be used in conjunction with efforts to improve MOUD access among Black individuals who use opioids nonmedically.
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- 2024
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344. 'Do all bisexuals have this power?': An exploratory study of 'crippling nicotine addiction,' identity, and other emergent themes in vaping messages on QueerTok
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Coltin Ball, Shannon Lea Watkins, Alexis Fahrion, Makayla Morales, Abigail McDonald, Erin A. Vogel, and Minji Kim
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LGBTQ+ ,E-cigarettes ,Electronic cigarettes ,Social media ,Adolescent health ,Young adult ,Public aspects of medicine ,RA1-1270 - Abstract
Nicotine and tobacco use disproportionally affects sexual and gender minority (SGM) populations in the United States. Social media narratives may contribute to these disparities. This qualitative study delineated perceptions and experiences depicted in SGM-related videos about nicotine vaping on TikTok. Young adult researchers engaged in every step of the research process, adding an insider perspective. Using four TikTok accounts, we used vaping and SGM-related search terms to sample videos in March–April 2022. Three TikTok accounts collected SGM-specific videos; a fourth provided non-SGM specific videos for comparison. We iteratively sorted 303 unique videos into 32 a priori and emergent codes and identified themes in SGM videos and comparison videos. In their videos, creators displayed awareness of and ambivalence toward vaping and nicotine dependence. SGM videos reflected vaping as a salient feature of identity and a consideration in romantic partnership. Studying video-based social media platforms, like TikTok, using an insider-engaged qualitative lens promotes rich interpretation of content to identify prevalent and emerging messages, which can inform appropriate interventions for SGM young people.
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- 2024
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345. The strand exchange domain of tumor suppressor PALB2 is intrinsically disordered and promotes oligomerization-dependent DNA compaction
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Yevhenii Kyriukha, Maxwell B. Watkins, Jennifer M. Redington, Nithya Chintalapati, Abhishek Ganti, Reza Dastvan, Vladimir N. Uversky, Jesse B. Hopkins, Nicola Pozzi, and Sergey Korolev
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Biochemistry ,Molecular biology ,Cell biology ,Science - Abstract
Summary: The partner and localizer of BRCA2 (PALB2) is a scaffold protein linking BRCA1 with BRCA2 and RAD51 during homologous recombination (HR). PALB2 interaction with DNA strongly enhances HR in cells, while the PALB2 DNA-binding domain (PALB2-DBD) supports DNA strand exchange in vitro. We determined that PALB2-DBD is intrinsically disordered beyond a single N-terminal α-helix. Coiled-coil mediated dimerization is stabilized by interaction between intrinsically disordered regions (IDRs) leading to a 2-fold structural compaction. Single-stranded (ss)DNA binding promotes additional structural compaction and protein tetramerization. Using confocal single-molecule FRET, we observed bimodal and oligomerization-dependent compaction of ssDNA bound to PALB2-DBD, suggesting a novel strand exchange mechanism. Bioinformatics analysis and preliminary observations indicate that PALB2 forms protein-nucleic acids condensates. Intrinsically disordered DBDs are prevalent in the human proteome. PALB2-DBD and similar IDRs may use a chaperone-like mechanism to aid formation and resolution of DNA and RNA multichain intermediates during DNA replication, repair and recombination.
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- 2024
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346. 'You said burnout? Whew, chile!' A multigenerational collaborative autoethnography on the complexities of burnout and care among Black women researching substance use
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Natalie Malone, Kaylee A Palomino, Valerie PA Verty, Mona KM Goggins, Jasmine K Jester, Brittany Miller-Roenigk, Paris Wheeler, Jardin Dogan-Dixon, Mekaila Keeling, Kendall A McCleod, India McCray, Zoe A Sigola, Jovonna D Atkinson, Candice N Hargons, and Danelle Stevens-Watkins
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Medicine - Abstract
Background: Researchers and participants who are members of minoritized populations experience negative psychosocial and wellness outcomes like burnout. Burnout may manifest uniquely for Black women in academia conducting research with Black women participants navigating similar sociocultural contexts. Objectives: This article qualitatively interprets our experiences as 15 Black women scholar-practitioners at a midwestern university conducting community-engaged research. We discuss our experiences of care and burnout while working to reduce opioid use disparities among Black women community members as we simultaneously navigate multilevel challenges in academia. Design: We employ collaborative autoethnography, an autobiographical writing method, using a Black feminist framework and intersectionality methodology. Methods: We are 15 Black women researcher-subjects on the REFOCUS study—a mixed-methods National Institute on Health-funded project examining nonmedical prescription opioid misuse among Black Kentuckians. We examined a series of multigenerational sista circles and individual journal entries we completed to understand the multilevel power dynamics impacting our individual and collective work, burnout, and care. Results: Themes were: (1) “I see me in you”: Research with Black Women, (2) “Pervasive, cellular, and epigenetic”: Burnout Experiences; (3) “Taxing but rewarding”: The Price We Pay to See an Outcome, and (4) “Thank God for the collective”: Complexities of Caring Through the Process. Conclusion: We highlight the importance of continued efforts to address workload inequities among Black women in academia, particularly for those working to combat health disparities among Black women or within Black communities. We make recommendations for structural, institutional, and interpersonal steps to improve the support of Black women across career stages.
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- 2024
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347. Developing p21-activated kinase 1 (PAK1) activators to treat hypertrophic cardiomyopathy (HCM)
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Yu He, James S.H. Bae, Ying-Jie Wang, Hugh Watkins, and Ming Lei
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Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2024
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348. Evaluating an App-Based Intervention for Preventing Firearm Violence and Substance Use in Young Black Boys and Men: Usability Evaluation Study
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Chuka Emezue, Dale Dan-Irabor, Andrew Froilan, Aaron Dunlap, Pablo Zamora, Sarah Negron, Janiya Simmons, Jayla Watkins, Wrenetha A Julion, and Niranjan S Karnik
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Medicine - Abstract
BackgroundYoung Black male individuals are 24 times more likely to be impacted by firearm injuries and homicides but encounter significant barriers to care and service disengagement, even in program-rich cities across the United States, leaving them worryingly underserved. Existing community-based interventions focus on secondary and tertiary prevention after firearm violence has occurred and are typically deployed in emergency settings. To address these service and uptake issues, we developed BrotherlyACT—a nurse-led, culturally tailored, multicomponent app—to reduce the risk and effects of firearm injuries and homicides and to improve access to precrisis and mental health resources for young Black male individuals (aged 15-24 years) in low-resource and high-violence settings. Grounded in Acceptance and Commitment Therapy, the app provides life skills coaching, safety planning, artificial intelligence–powered talk therapy, and zip code–based service connections directly to young Black male individuals at risk for violence and substance use. ObjectiveThe primary aim of this study is to evaluate the usability, engagement, and satisfaction of BrotherlyACT among target young Black male users and mobile health (mHealth) experts, using a combination of formative usability testing (UT) and heuristic evaluation (HE). MethodsUsing a convergent mixed methods approach, we evaluated the BrotherlyACT app using HE by 8 mHealth specialists and conducted UT with 23 participants, comprising 15 young Black male users (aged 15-24 years), alongside 4 adult internal team testers and 4 high school students who were part of our youth advisory board. UT included the System Usability Scale and thematic analysis of think-aloud interviews and cognitive walkthroughs. HE involved mHealth experts applying the Nielsen severity rating scale (score 0-3, with 3 indicating a major issue). All testing was conducted via REDCap (Research Electronic Data Capture) and Zoom or in person. ResultsQualitative usability issues were categorized into 8 thematic groups, revealing only minor usability concerns. The app achieved an average System Usability Scale score of 79, equivalent to an A-minus grade and placing it in the 85th percentile, indicating near-excellent usability. Similarly, the HE by testers identified minor and cosmetic usability issues, with a median severity score of 1 across various heuristics (on a scale of 0-3), indicating minimal impact on user experience. Overall, minor adjustments were recommended to enhance navigation, customization, and guidance for app users, while the app’s visual and functional design was generally well received. ConclusionsBrotherlyACT was considered highly usable and acceptable. Testers in the UT stage gave the app a positive overall rating and emphasized that several key improvements were made. Findings from our UT prompted revisions to the app prototype. Moving forward, a pilot study with a pretest-posttest design will evaluate the app’s efficacy in community health and emergency care settings. International Registered Report Identifier (IRRID)RR2-10.2196/43842
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- 2024
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349. Scoping review of review methodologies used for guiding evidence-based practice in critical care: a protocol
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Hugh Davies, Andrew A Udy, Debbie Massey, Kate Brooks, Emma J Ridley, Paige Marie Watkins, Amy Freeman-Sanderson, Marc Richard Nickels, and Melissa Ankravs
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Medicine - Abstract
Introduction A literature review provides a synthesis on a selection of papers about a specific topic. This is used by health practitioners in critical care as in other specialities when making clinical practice decisions. The task of knowledge transfer through the review process of scientific papers involves a variety of methodologies with differing expectations on the quality and rigour that is applied. Exploration on the types of review methodologies selected by the authors of critical care literature may reveal the extent that choice of methodology has on how papers are selected and appraised may influence evidence-based practice recommendations. This scoping review aims to systematically map the breadth of current literature with the objective of identifying the types of review methodologies used by interdisciplinary authors synthesising the literature in adult critical care.Methods and analysis Arksey and O’Malley’s approach in conducting a scoping review will be followed and use of the Preferred Reporting Items for Systematic Reviews and Meta-Analyses Extension for Scoping Review guidelines in the reporting of findings. Papers with diverse review methodologies will be identified by searching four electronic databases (CINAHL/EBSCO, MEDLINE/PubMed, Scopus and Embase). Grey literature will be excluded due to the clinical nature of the review question. Search results will be reviewed independently by two researchers based on title and abstract followed by full-text papers that meet inclusion criteria. Characteristics of review methodologies will be collected and analysed using a tool developed by the interdisciplinary research team.Ethics and dissemination This scoping review will provide an overview of the types of review methodologies most often undertaken with the interdisciplinary research team synthesising the quality of critical care literature. Scrutiny will be applied to the review methodologies selected, the challenges faced and current trends in the transfer of knowledge towards evidence-based practice. The results will be disseminated by publication through a peer-reviewed journal and by presentation as a part of conference proceedings. Ethics approval is not applicable for this scoping review.
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- 2024
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350. Connected Communities | Learning lessons from person-centred community-based support services’ implementation: a mixed-methods study protocol. [version 2; peer review: 1 approved, 2 approved with reservations]
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Danielle L. Christian, Madalina Toma, Kathryn Berzins, Jo C. Weldon, Caroline Watkins, Mark Gabbay, and Julien Forder
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Social prescribing ,community-based ,implementation ,CFIR ,NPT ,social care ,eng ,Medicine - Abstract
Background Person-centred community-based support services (PCCBSS) are an array of non-clinical services provided by organisations such as NHS Trusts, voluntary sector organisations, or local authorities. All PCCBSS involve an individual (variously known as a 'social prescriber’, ‘link worker’, ‘signposter’, ‘navigator’, ‘connector’ or ‘neighbourhood coach’) who talks with a service user before directing them to a range of relevant community sources of social, emotional, and practical support. Despite much recent investment in social prescribing, and its increased prominence within the policy context across England, little is understood about how PCCBSS are implemented. Research is required across different contexts to describe PCCBSS implementation; in particular, how social care providers successfully interact to support the implementation of PCCBSS, and how services responded to circumstances imposed by the COVID-19 pandemic. Purpose The aim of this post-implementation mixed-methods study is to explore how PCCBSS are implemented and become part of usual working practice. Using three services in North West England as case studies, we will examine factors influencing PCCBSS implementation and establish where there is learning for the wider adult social care system. Focus The study comprises two work packages (WPs): WP1: collecting data by reviewing service documents from three PCCBSS case studies; WP2: interviewing staff and service users (≤20 participants per PCCBSS); Key implementation data will be systematically abstracted (from WPs1&2) into a coding frame; combining contextual determinants from the Consolidated Framework for Implementation Research (CFIR) with process-related domains from Normalization Process Theory (NPT). Key outputs The findings from WP1 and WP2 will be presented in the form of an illustrated ‘pen portrait’, developed collaboratively with Applied Research Collaboration North West Coast (ARC NWC) public advisers, to illustrate how implementation evolved for each of the PCCBSS across key time-points in the process (initiation; operation; maintenance). The findings will also inform an online implementation toolkit providing recommendations for setting up future PCCBSS.
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- 2024
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