132 results on '"Vears, Danya F."'
Search Results
102. Erratum: Legal approaches regarding health-care decisions involving minors: implications for next-generation sequencing
- Author
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Sénécal, Karine, primary, Thys, Kristof, additional, Vears, Danya F, additional, Van Assche, Kristof, additional, Knoppers, Bartha M, additional, and Borry, Pascal, additional
- Published
- 2017
- Full Text
- View/download PDF
103. Readability of informed consent forms for whole-exome and whole-genome sequencing
- Author
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Niemiec, Emilia, Vears, Danya F., Borry, Pascal, Howard, Heidi Carmen, Niemiec, Emilia, Vears, Danya F., Borry, Pascal, and Howard, Heidi Carmen
- Abstract
Whole-exome and whole-genome sequencing (WES, WGS) can generate an unprecedented amount of complex information, making the informed consent (IC) process challenging. The aim of our study was to assess the readability of English IC forms for clinical whole-exome and whole-genome sequencing using the SMOG and Flesch-Kincaid formulas. We analysed 36 forms, most of which were from US providers. The median readability grade levels were 14.75 (the SMOG formula) and 12.2 (the Flesch-Kincaid formula); these values indicate the years of education after which a person would be able to understand a text studied. All forms studied seem to fail to meet the average recommended readability grade level of 8 (e.g. by Institutional Review Boards of US medical schools) for IC forms, indicating that the content of the forms may not be comprehensible to many patients. The sections aimed at health care professionals (HCPs) in the forms indicate that HCPs should be responsible for explaining IC information to the patients. However, WES and WGS may be increasingly offered by primary care professionals who may not (yet) have sufficient training to be able to communicate effectively with patients about genomics. Therefore, to secure an adequate, truly informed consent process, the task of developing good, legible examples of IC forms along with educating HCPs in genomics should be taken seriously, and adequate resources should be allocated to enable these tasks.
- Published
- 2017
104. Ethical sharing of health data in online platforms – which values should be considered?
- Author
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Riso, Brígida; https://orcid.org/0000-0001-5928-8895, Tupasela, Aaro, Vears, Danya F, Felzmann, Heike, Cockbain, Julian, Loi, Michele, Kongsholm, Nana C. H, Zullo, Silvia, Rakic, Vojin, Riso, Brígida; https://orcid.org/0000-0001-5928-8895, Tupasela, Aaro, Vears, Danya F, Felzmann, Heike, Cockbain, Julian, Loi, Michele, Kongsholm, Nana C. H, Zullo, Silvia, and Rakic, Vojin
- Abstract
Intensified and extensive data production and data storage are characteristics of contemporary western societies. Health data sharing is increasing with the growth of Information and Communication Technology (ICT) platforms devoted to the collection of personal health and genomic data. However, the sensitive and personal nature of health data poses ethical challenges when data is disclosed and shared even if for scientific research purposes. With this in mind, the Science and Values Working Group of the COST Action CHIP ME ‘Citizen's Health through public-private Initiatives: Public health, Market and Ethical perspectives’ (IS 1303) identified six core values they considered to be essential for the ethical sharing of health data using ICT platforms. We believe that using this ethical framework will promote respectful scientific practices in order to maintain individuals’ trust in research. We use these values to analyse five ICT platforms and explore how emerging data sharing platforms are reconfiguring the data sharing experience from a range of perspectives. We discuss which types of values, rights and responsibilities they entail and enshrine within their philosophy or outlook on what it means to share personal health information. Through this discussion we address issues of the design and the development process of personal health data and patient-oriented infrastructures, as well as new forms of technologically-mediated empowerment.
- Published
- 2017
105. Testing Children for Genetic Carrier Status
- Author
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Vears, Danya F, primary
- Published
- 2017
- Full Text
- View/download PDF
106. Unsolved challenges in pediatric whole-exome sequencing: A literature analysis
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Bertier, Gabrielle, primary, Sénécal, Karine, additional, Borry, Pascal, additional, and Vears, Danya F., additional
- Published
- 2017
- Full Text
- View/download PDF
107. Legal approaches regarding health-care decisions involving minors: implications for next-generation sequencing
- Author
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Sénécal, Karine, primary, Thys, Kristof, additional, Vears, Danya F, additional, Van Assche, Kristof, additional, Knoppers, Bartha M, additional, and Borry, Pascal, additional
- Published
- 2016
- Full Text
- View/download PDF
108. Kufs disease due to mutation of CLN6: clinical, pathological and molecular genetic features.
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Berkovic, Samuel F, Oliver, Karen L, Canafoglia, Laura, Krieger, Penina, Damiano, John A, Hildebrand, Michael S, Morbin, Michela, Vears, Danya F, Sofia, Vito, Giuliano, Loretta, Garavaglia, Barbara, Simonati, Alessandro, Santorelli, Filippo M, Gambardella, Antonio, Labate, Angelo, Belcastro, Vincenzo, Castellotti, Barbara, Ozkara, Cigdem, Zeman, Adam, and Rankin, Julia
- Abstract
Kufs disease is the major adult form of neuronal ceroid lipofuscinosis, but is rare and difficult to diagnose. Diagnosis was traditionally dependent on the demonstration of characteristic storage material, but distinction from normal age-related accumulation of lipofuscin can be challenging. Mutation of CLN6 has emerged as the most important cause of recessive Kufs disease but, remarkably, is also responsible for variant late infantile ceroid lipofuscinosis. Here we provide a detailed description of Kufs disease due to CLN6 pathogenic variants. We studied 20 cases of Kufs disease with CLN6 pathogenic variants from 13 unrelated families. Mean age of onset was 28 years (range 12-51) with bimodal peaks in teenage and early adult life. The typical presentation was of progressive myoclonus epilepsy with debilitating myoclonic seizures and relatively infrequent tonic-clonic seizures. Patients became wheelchair-bound with a mean 12 years post-onset. Ataxia was the most prominent motor feature. Dementia appeared to be an invariable accompaniment, although it could take a number of years to manifest and occasionally cognitive impairment preceded myoclonic seizures. Patients were usually highly photosensitive on EEG. MRI showed progressive cerebral and cerebellar atrophy. The median survival time was 26 years from disease onset. Ultrastructural examination of the pathology revealed fingerprint profiles as the characteristic inclusions, but they were not reliably seen in tissues other than brain. Curvilinear profiles, which are seen in the late infantile form, were not a feature. Of the 13 unrelated families we observed homozygous CLN6 pathogenic variants in four and compound heterozygous variants in nine. Compared to the variant late infantile form, there was a lower proportion of variants that predicted protein truncation. Certain heterozygous missense variants in the same amino acid position were found in both variant late infantile and Kufs disease. There was a predominance of cases from Italy and surrounding regions; this was partially explained by the discovery of three founder pathogenic variants. Clinical distinction of type A (progressive myoclonus epilepsy) and type B (dementia with motor disturbance) Kufs disease was supported by molecular diagnoses. Type A is usually caused by recessive pathogenic variants in CLN6 or dominant variants in DNAJC5. Type B Kufs is usually associated with recessive CTSF pathogenic variants. The diagnosis of Kufs remains challenging but, with the availability of genetic diagnosis, this will largely supersede the use of diagnostic biopsies, particularly as biopsies of peripheral tissues has unsatisfactory sensitivity and specificity. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
109. Reflexivity and the clinician-researcher: managing participant misconceptions
- Author
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Hiller, Amy J, primary and Vears, Danya F, additional
- Published
- 2016
- Full Text
- View/download PDF
110. Genome-based newborn screening: a conceptual analysis of the best interests of the child standard
- Author
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Sénécal, Karine, primary, Vears, Danya F, additional, Bertier, Gabrielle, additional, Knoppers, Bartha Maria, additional, and Borry, Pascal, additional
- Published
- 2015
- Full Text
- View/download PDF
111. A Mutation in the Golgi Qb-SNARE Gene GOSR2 Causes Progressive Myoclonus Epilepsy with Early Ataxia
- Author
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Corbett, Mark A., Schwake, Michael, Bahlo, Melanie, Dibbens, Leanne M., Lin, Meng, Gandolfo, Luke C., Vears, Danya F., O'Sullivan, John D., Robertson, Thomas, Bayly, Marta A., Gardner, Alison E., Vlaar, Annemarie M., Korenke, G. Christoph, Bloem, Bastiaan R., de Coo, Irenaeus F., Verhagen, Judith M.A., Lehesjoki, Anna-Elina, Gecz, Jozef, and Berkovic, Samuel F.
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- 2011
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- View/download PDF
112. Genetic epilepsy with febrile seizures plus: Refining the spectrum.
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Yue-Hua Zhang, Burgess, Rosemary, Malone, Jodie P., Glubb, Georgie C., Helbig, Katherine L., Vadlamudi, Lata, Kivity, Sara, Afawi, Zaid, Bleasel, Andrew, Grattan-Smith, Padraic, Grinton, Bronwyn E., Bellows, Susannah T., Vears, Danya F., Damiano, John A., Goldberg-Stern, Hadassa, Korczyn, Amos D., Dibbens, Leanne M., Ruzzo, Elizabeth K., Hildebrand, Michael S., and Berkovic, Samuel F.
- Published
- 2017
- Full Text
- View/download PDF
113. Genomic newborn screening: public health policy considerations and recommendations.
- Author
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Friedman, Jan M., Cornel, Martina C., Goldenberg, Aaron J., Lister, Karla J., Sénécal, Karine, and Vears, Danya F.
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NEWBORN screening ,HEALTH policy ,COST effectiveness ,MEDICAL ethics ,PATHOLOGICAL laboratories - Abstract
Background: The use of genome-wide (whole genome or exome) sequencing for population-based newborn screening presents an opportunity to detect and treat or prevent many more serious early-onset health conditions than is possible today. Methods: The Paediatric Task Team of the Global Alliance for Genomics and Health's Regulatory and Ethics Working Group reviewed current understanding and concerns regarding the use of genomic technologies for population-based newborn screening and developed, by consensus, eight recommendations for clinicians, clinical laboratory scientists, and policy makers. Results: Before genome-wide sequencing can be implemented in newborn screening programs, its clinical utility and cost-effectiveness must be demonstrated, and the ability to distinguish disease-causing and benign variants of all genes screened must be established. In addition, each jurisdiction needs to resolve ethical and policy issues regarding the disclosure of incidental or secondary findings to families and ownership, appropriate storage and sharing of genomic data. Conclusion: The best interests of children should be the basis for all decisions regarding the implementation of genomic newborn screening. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
114. Abnormal Processing of Autophagosomes in Transformed B Lymphocytes from SCARB2-Deficient Subjects
- Author
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Gleich, Kurt, primary, Desmond, Michael J., additional, Lee, Darren, additional, Berkovic, Samuel F., additional, Dibbens, Leanne M., additional, Katerelos, Marina, additional, Bayly, Marta A., additional, Fraser, Scott A., additional, Martinello, Paul, additional, Vears, Danya F., additional, Mount, Peter, additional, and Power, David A., additional
- Published
- 2013
- Full Text
- View/download PDF
115. Clinicians' Views and Experiences with Offering and Returning Results from Exome Sequencing to Parents of Infants with Hearing Loss.
- Author
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Notini, Lauren, Gaff, Clara L., Savulescu, Julian, and Vears, Danya F.
- Subjects
HEARING disorders ,MEDICAL personnel ,NEWBORN screening ,AUDITORY neuropathy ,CONDUCTIVE hearing loss ,CHILD death ,CLINICAL medicine - Abstract
Exome sequencing (ES) is an effective method for identifying the genetic cause of hearing loss in infants diagnosed through newborn hearing screening programs. ES has the potential to be integrated into routine clinical care, yet little is known about the experiences of clinicians offering this test to families. To address this gap, clinicians involved in a clinical study using ES to identify the cause of infants' hearing loss were interviewed to explore their experiences with offering and returning results to parents. Interview transcripts were analysed using inductive content analysis. Twelve clinicians participated: seven genetic counsellors, four clinical geneticists, and one paediatrician. Most clinicians were supportive of offering ES to infants with hearing loss, primarily because results may inform the child's clinical management. However, some expressed concerns, questioning the utility of this information, particularly for isolated hearing loss. Clinicians had differing views regarding the optimal time to offer ES to families; while some felt that families can manage everything at once, others recommended delaying testing until parents have come to terms with their child's diagnosis. These findings show the complexity involved in determining how ES should be offered to families following the diagnosis of a child with hearing loss, particularly with regards to when testing is suggested. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
116. Ethical sharing of health data in online platforms – which values should be considered?
- Author
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Riso, Brígida, Tupasela, Aaro, Vears, Danya F., Felzmann, Heike, Cockbain, Julian, Loi, Michele, Kongsholm, Nana C.H., Zullo, Silvia, and Rakic, Vojin
- Subjects
Data sharing ,Information and communication technology platforms ,Ethical values ,Interoperability ,Health data ,Health research ,3. Good health - Abstract
Intensified and extensive data production and data storage are characteristics of contemporary western societies. Health data sharing is increasing with the growth of Information and Communication Technology (ICT) platforms devoted to the collection of personal health and genomic data. However, the sensitive and personal nature of health data poses ethical challenges when data is disclosed and shared even if for scientific research purposes. With this in mind, the Science and Values Working Group of the COST Action CHIP ME ‘Citizen's Health through public-private Initiatives: Public health, Market and Ethical perspectives’ (IS 1303) identified six core values they considered to be essential for the ethical sharing of health data using ICT platforms. We believe that using this ethical framework will promote respectful scientific practices in order to maintain individuals’ trust in research. We use these values to analyse five ICT platforms and explore how emerging data sharing platforms are reconfiguring the data sharing experience from a range of perspectives. We discuss which types of values, rights and responsibilities they entail and enshrine within their philosophy or outlook on what it means to share personal health information. Through this discussion we address issues of the design and the development process of personal health data and patient-oriented infrastructures, as well as new forms of technologically-mediated empowerment., Life Sciences, Society and Policy, 13, ISSN:2195-7819
117. Return of individual research results from genomic research: A systematic review of stakeholder perspectives
- Author
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Vears, Danya F, Minion, Joel T, Roberts, Stephanie J, Cummings, James, Machirori, Mavis, Blell, Mwenza, Budin-Lj��sne, Isabelle, Cowley, Lorraine, Dyke, Stephanie OM, Gaff, Clara, Green, Robert, Hall, Alison, Johns, Amber L, Knoppers, Bartha M, Mulrine, Stephanie, Patch, Christine, Winkler, Eva, and Murtagh, Madeleine J
- Subjects
Medicine and health sciences ,Biology and life sciences ,FOS: Social sciences ,Social sciences ,3. Good health ,Research Article - Abstract
Funder: Canada Research Chair in Law and Medicine, Funder: Genome Quebec, Funder: Genome Canada; funder-id: http://dx.doi.org/10.13039/100008762, Funder: Canada Institute of Health Research, Funder: Franca Fund, Funder: Can-SHARE Connect, Despite the plethora of empirical studies conducted to date, debate continues about whether and to what extent results should be returned to participants of genomic research. We aimed to systematically review the empirical literature exploring stakeholders' perspectives on return of individual research results (IRR) from genomic research. We examined preferences for receiving or willingness to return IRR, and experiences with either receiving or returning them. The systematic searches were conducted across five major databases in August 2018 and repeated in April 2020, and included studies reporting findings from primary research regardless of method (quantitative, qualitative, mixed). Articles that related to the clinical setting were excluded. Our search identified 221 articles that met our search criteria. This included 118 quantitative, 69 qualitative and 34 mixed methods studies. These articles included a total number of 118,874 stakeholders with research participants (85,270/72%) and members of the general public (40,967/35%) being the largest groups represented. The articles spanned at least 22 different countries with most (144/65%) being from the USA. Most (76%) discussed clinical research projects, rather than biobanks. More than half (58%) gauged views that were hypothetical. We found overwhelming evidence of high interest in return of IRR from potential and actual genomic research participants. There is also a general willingness to provide such results by researchers and health professionals, although they tend to adopt a more cautious stance. While all results are desired to some degree, those that have the potential to change clinical management are generally prioritized by all stakeholders. Professional stakeholders appear more willing to return results that are reliable and clinically relevant than those that are less reliable and lack clinical relevance. The lack of evidence for significant enduring psychological harm and the clear benefits to some research participants suggest that researchers should be returning actionable IRRs to participants.
118. Legal approaches regarding health-care decisions involving minors: implications for next-generation sequencing
- Author
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Sénécal, Karine, Thys, Kristof, Vears, Danya F, Van Assche, Kristof, Knoppers, Bartha M, and Borry, Pascal
- Published
- 2017
- Full Text
- View/download PDF
119. Return of individual research results from genomic research: a systematic review of stakeholder perspectives
- Author
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Mavis Machirori, James Cummings, Alison Hall, Eva C. Winkler, Joel T. Minion, Lorraine Cowley, Christine Patch, Stephanie O. M. Dyke, Stephanie J. Roberts, Isabelle Budin-Ljøsne, Mwenza Blell, Stephanie Mulrine, Robert C. Green, Madeleine J. Murtagh, Danya F. Vears, Bartha Maria Knoppers, Clara Gaff, Amber L. Johns, Vears, Danya F [0000-0002-6290-545X], Roberts, Stephanie J [0000-0001-9289-0968], Blell, Mwenza [0000-0002-6794-3826], Cowley, Lorraine [0000-0001-7789-5197], Patch, Christine [0000-0002-4191-0663], and Apollo - University of Cambridge Repository
- Subjects
Biomedical Research ,Medical Journals ,Epidemiology ,Social Sciences ,MEDICAL GENETICS ,Alzheimer's Disease ,Medical Conditions ,Empirical research ,Risk Factors ,Psychological Attitudes ,Medicine and Health Sciences ,Psychology ,ALZHEIMER-DISEASE ,0303 health sciences ,Multidisciplinary ,INFORMED-CONSENT ,BIOBANK PARTICIPANTS PREFERENCES ,Cancer Risk Factors ,SECONDARY FINDINGS ,030305 genetics & heredity ,Stakeholder ,Neurodegenerative Diseases ,Genomics ,GENETIC RISK-ASSESSMENT ,Biobank ,3. Good health ,Multidisciplinary Sciences ,Oncology ,Neurology ,RECEIVING INFORMATION ,WHOLE-GENOME ,Medicine ,Science & Technology - Other Topics ,INCIDENTAL FINDINGS ,Research Article ,Primary research ,medicine.medical_specialty ,Science ,Health Personnel ,Genomic research ,MEDLINE ,03 medical and health sciences ,Genomic Medicine ,Stakeholder Participation ,Mental Health and Psychiatry ,Genetics ,medicine ,Humans ,030304 developmental biology ,Science & Technology ,Genome, Human ,Biology and Life Sciences ,Human Genetics ,C400 ,Harm ,Clinical research ,Medical Risk Factors ,Family medicine ,Genetics of Disease ,HEALTH-CARE ,Dementia ,Medical Humanities - Abstract
Despite the plethora of empirical studies conducted to date, debate continues about whether and to what extent results should be returned to participants of genomic research. We aimed to systematically review the empirical literature exploring stakeholders' perspectives on return of individual research results (IRR) from genomic research. We examined preferences for receiving or willingness to return IRR, and experiences with either receiving or returning them. The systematic searches were conducted across five major databases in August 2018 and repeated in April 2020, and included studies reporting findings from primary research regardless of method (quantitative, qualitative, mixed). Articles that related to the clinical setting were excluded. Our search identified 221 articles that met our search criteria. This included 118 quantitative, 69 qualitative and 34 mixed methods studies. These articles included a total number of 118,874 stakeholders with research participants (85,270/72%) and members of the general public (40,967/35%) being the largest groups represented. The articles spanned at least 22 different countries with most (144/65%) being from the USA. Most (76%) discussed clinical research projects, rather than biobanks. More than half (58%) gauged views that were hypothetical. We found overwhelming evidence of high interest in return of IRR from potential and actual genomic research participants. There is also a general willingness to provide such results by researchers and health professionals, although they tend to adopt a more cautious stance. While all results are desired to some degree, those that have the potential to change clinical management are generally prioritized by all stakeholders. Professional stakeholders appear more willing to return results that are reliable and clinically relevant than those that are less reliable and lack clinical relevance. The lack of evidence for significant enduring psychological harm and the clear benefits to some research participants suggest that researchers should be returning actionable IRRs to participants. ispartof: PLOS ONE vol:16 issue:11 ispartof: location:United States status: published
- Published
- 2021
120. Members of the public in the USA, UK, Canada and Australia expressing genetic exceptionalism say they are more willing to donate genomic data
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Peter Goodhand, Claire Steed, Jason Bobe, Katherine I. Morley, Richard Milne, Christine Critchley, Danya F. Vears, Erick R. Scott, Jerome Atutornu, Adrian Thorogood, Anna Middleton, Paul Bevan, Emilia Niemiec, Erika Kleiderman, Barbara Prainsack, Heidi Carmen Howard, Laurens Robarts, James Smith, Dianne Nicol, Middleton, Anna [0000-0003-3103-8098], Milne, Richard [0000-0002-8770-2384], Nicol, Dianne [0000-0002-6553-2839], Vears, Danya F. [0000-0002-6290-545X], and Apollo - University of Cambridge Repository
- Subjects
Adult ,Male ,Value (ethics) ,Canada ,Health Knowledge, Attitudes, Practice ,medicine.medical_specialty ,Genomics ,Social sciences ,03 medical and health sciences ,706/689/179 ,Genetics ,medicine ,Humans ,Genetic Testing ,Sociology ,Genetik ,Genetic Privacy ,Genetics (clinical) ,Other Social Sciences ,Medicinsk genetik ,030304 developmental biology ,Ethics ,0303 health sciences ,Participant Values Work Stream of the Global Alliance for Genomics and Health ,Genome, Human ,Information Dissemination ,business.industry ,Genetic exceptionalism ,030305 genetics & heredity ,Australia ,article ,706/689 ,Middle Aged ,Public relations ,Publics ,United Kingdom ,United States ,Data sharing ,Public Opinion ,Donation ,Scale (social sciences) ,Annan samhällsvetenskap ,Medical genetics ,Female ,business ,Medical Genetics - Abstract
Funder: State Government of Victoria (Victorian Government); doi: https://doi.org/10.13039/501100004752, Funder: Victorian State Government, Public acceptance is critical for sharing of genomic data at scale. This paper examines how acceptance of data sharing pertains to the perceived similarities and differences between DNA and other forms of personal data. It explores the perceptions of representative publics from the USA, Canada, the UK and Australia (n = 8967) towards the donation of DNA and health data. Fifty-two percent of this public held ‘exceptionalist’ views about genetics (i.e., believed DNA is different or ‘special’ compared to other types of medical information). This group was more likely to be familiar with or have had personal experience with genomics and to perceive DNA information as having personal as well as clinical and scientific value. Those with personal experience with genetics and genetic exceptionalist views were nearly six times more likely to be willing to donate their anonymous DNA and medical information for research than other respondents. Perceived harms from re-identification did not appear to dissuade publics from being willing to participate in research. The interplay between exceptionalist views about genetics and the personal, scientific and clinical value attributed to data would be a valuable focus for future research.
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- 2020
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121. Readability of informed consent forms for whole-exome and whole-genome sequencing
- Author
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Pascal Borry, Danya F. Vears, Emilia Niemiec, Heidi Carmen Howard, Niemiec, Emilia, Vears, Danya F., Borry, Pascal, and Howard, Heidi Carmen
- Subjects
0301 basic medicine ,Medical Ethics ,Dewey Decimal Classification::500 | Naturwissenschaften::570 | Biowissenschaften, Biologie ,Epidemiology ,Genetic counseling ,education ,030105 genetics & heredity ,Bioinformatics ,Medicinsk etik ,Readability ,Task (project management) ,03 medical and health sciences ,Informed consent ,ddc:570 ,Health care ,Medicine ,Genetics (clinical) ,Exome sequencing ,Medical education ,Genetic counselling ,business.industry ,Public Health, Environmental and Occupational Health ,Whole exome sequencing ,Bioethics ,Whole genome sequencing ,Original Article ,business ,Medical ethics - Abstract
Whole-exome and whole-genome sequencing (WES, WGS) can generate an unprecedented amount of complex information, making the informed consent (IC) process challenging. The aim of our study was to assess the readability of English IC forms for clinical whole-exome and whole-genome sequencing using the SMOG and Flesch-Kincaid formulas. We analysed 36 forms, most of which were from US providers. The median readability grade levels were 14.75 (the SMOG formula) and 12.2 (the Flesch-Kincaid formula); these values indicate the years of education after which a person would be able to understand a text studied. All forms studied seem to fail to meet the average recommended readability grade level of 8 (e.g. by Institutional Review Boards of US medical schools) for IC forms, indicating that the content of the forms may not be comprehensible to many patients. The sections aimed at health care professionals (HCPs) in the forms indicate that HCPs should be responsible for explaining IC information to the patients. However, WES and WGS may be increasingly offered by primary care professionals who may not (yet) have sufficient training to be able to communicate effectively with patients about genomics. Therefore, to secure an adequate, truly informed consent process, the task of developing good, legible examples of IC forms along with educating HCPs in genomics should be taken seriously, and adequate resources should be allocated to enable these tasks. ispartof: Journal of Community Genetics vol:9 issue:2 pages:143-151 ispartof: location:Germany status: published
- Published
- 2017
- Full Text
- View/download PDF
122. Current Ethical Issues Related to the Implementation of Whole-Exome and Whole-Genome Sequencing
- Author
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Heidi Carmen Howard, Louiza Kalokairinou, Danya F. Vears, Pascal Borry, Davit Chokoshvili, Emilia Niemiec, Borry, Pascal, Chokoshvili, Davit, Niemiec, Emilia, Kalokairinou, Louiza, Vears, Danya F., and Howard, Heidi Carmen
- Subjects
Whole genome sequencing ,medicine.diagnostic_test ,media_common.quotation_subject ,Context (language use) ,Whole-exome sequencing (WES), Whole-genome sequencing (WGS), Genomic variants, Genetic testing, Opportunistic screening, Hereditary diseases, Informed consent, Direct-to-consumer (DTC) genetic testing, Undiagnosed genetic conditions ,Commercialization ,Informed consent ,Realm ,medicine ,Engineering ethics ,Sociology ,Exome ,Duty ,Genetic testing ,media_common - Abstract
We have briefly discussed herein four of the many aspects that raise concerns in the context of implementation of whole-exome and whole-genome sequencing (mainly) in the clinical realm. Namely, we addressed issues surrounding: (1) the duty to hunt for variants known to have a health impact, (2) such “hunting” or opportunistic screening in children, (3) challenges to the consent process, and (4) the commercialization of genetic testing direct to consumer.
- Published
- 2015
123. Abnormal processing of autophagosomes in transformed B lymphocytes form SCARB2-deficient subjects
- Author
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Kurt Gleich, Michael J. Desmond, Darren Lee, Samuel F. Berkovic, Leanne M. Dibbens, Marina Katerelos, Marta A. Bayly, Scott A. Fraser, Paul Martinello, Danya F. Vears, Peter Mount, David A. Power, Gleich, Kurt, Desmond, Michael J, Lee, Darren, Berkovic, Samuel F, Dibbens, Leanne M, Katerlos, Marina, Bayly, Marta A, Fraser, Scott A, Martinello, Paul, Vears, Danya F, Mount, Peter, and Power, David A
- Subjects
LAMP2 ,Endoplasmic reticulum ,lcsh:R ,lcsh:Medicine ,SCARB2 ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Cell biology ,Cytosol ,medicine.anatomical_structure ,Membrane protein ,lcsh:Biology (General) ,Complementary DNA ,Original Research Articles ,cellular biology ,physiology ,medicine ,biochemistry ,genetics ,Fibroblast ,lcsh:QH301-705.5 ,B cell - Abstract
Mutations of the intrinsic lysosomal membrane protein SCARB2 cause action myoclonus-renal failure syndrome (AMRF syndrome), a rare disease characterized by renal and neurological manifestations. In this study, examination of Cos7 cells transfected with SCARB2 cDNA derived from two patients with AMRF syndrome showed that the resultant protein was truncated and was not incorporated into vesicular structures, as occurred with full-length SCARB2 cDNA. Mutant SCARB2 protein failed to colocalize with lysosomes and was found in the endoplasmic reticulum or the cytosol indicating a loss of function. Cultured skin fibroblast and Epstein-Barrvirus-transformed lymphoblastoid B cell lines (LCLs) were created from these two patients. Despite the loss ofSCARB2 function, studies with lysosomal-associated membrane protein (LAMP) 1 and LAMP2 demonstratednormal lysosomal numbers in fibroblasts and LCLs. Immunofluorescence microscopy using anti-LAMP1 andanti-LAMP2 antibodies also showed normal lysosomal structures in fibroblasts. There was no change in themorphology of fibroblasts examined by electron microscopy compared with cells from unaffected individuals.By contrast, LCLs from individuals bearing SCARB2 mutations had large intracellular vesicles that resembled autophagosomes and contained heterogeneous cellular debris. Some of the autophagosomes were seen to beextruding cellular contents into the media. Furthermore, LCLs had elevated levels of microtubule-associated protein light chain 3-II, consistent with increased autophagy. These data demonstrate that SCARB2 mutations are associated with an inability to process autophagosomes in B lymphocytes, suggesting a novel function for SCARB2 in immune function. Refereed/Peer-reviewed
- Published
- 2013
124. A mutation in the Golgi Qb-SNARE gene GOSR2 causes progressive myoclonus epilepsy with early ataxia
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Meng Lin, Danya F. Vears, Samuel F. Berkovic, Mark A. Corbett, John D. O'Sullivan, G. Christoph Korenke, Jozef Gecz, Judith M.A. Verhagen, Michael Schwake, Luke C. Gandolfo, Alison Gardner, Thomas Robertson, Irenaeus F.M. de Coo, Bastiaan R. Bloem, Marta A. Bayly, Leanne M. Dibbens, Melanie Bahlo, Annemarie M. M. Vlaar, Anna-Elina Lehesjoki, Corbett, Mark A, Schwake, Michael, Bahlo, Melanie, Dibbens, Leanne M, Lin, Meng, Gandolfo, Luke C, Vears, Danya F, O'Sullivan, John D, Robertson, Thomas, Bayly, Marta A, Gardner, Alison E, Vlaar, Annemarie M, Korenke, Christoph, Bloem, Bastiaan R, de Coo, Irenaeus F, Verhagen, Judith MA, Lehesjoki, Anna-Elina, Gecz, Jozef, Berkovic, Samuel F, Neurology, and Clinical Genetics
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Male ,Golgi Apparatus ,Functional Neurogenomics Human Movement & Fatigue [DCN 2] ,Neurological disorder ,Epilepsy ,Consanguinity ,0302 clinical medicine ,Genetics(clinical) ,chromosome ,Child ,Genetics (clinical) ,Spinocerebellar Degenerations ,Genetics ,0303 health sciences ,Homozygote ,Qb-SNARE Proteins ,myoclonus ,Pedigree ,Phenotype ,Female ,medicine.symptom ,SNARE Proteins ,Genetic Markers ,medicine.medical_specialty ,Ataxia ,Molecular Sequence Data ,Locus (genetics) ,Genes, Recessive ,Progressive myoclonus epilepsy ,Biology ,03 medical and health sciences ,Internal medicine ,Report ,medicine ,Humans ,Amino Acid Sequence ,gene ,030304 developmental biology ,medicine.disease ,Myoclonic Epilepsies, Progressive ,Endocrinology ,Mutation ,epilepsy ,mutation ,Lod Score ,protein ,Myoclonus ,030217 neurology & neurosurgery - Abstract
Item does not contain fulltext The progressive myoclonus epilepsies (PMEs) are a group of predominantly recessive disorders that present with action myoclonus, tonic-clonic seizures, and progressive neurological decline. Many PMEs have similar clinical presentations yet are genetically heterogeneous, making accurate diagnosis difficult. A locus for PME was mapped in a consanguineous family with a single affected individual to chromosome 17q21. An identical-by-descent, homozygous mutation in GOSR2 (c.430G>T, p.Gly144Trp), a Golgi vesicle transport gene, was identified in this patient and in four apparently unrelated individuals. A comparison of the phenotypes in these patients defined a clinically distinct PME syndrome characterized by early-onset ataxia, action myoclonus by age 6, scoliosis, and mildly elevated serum creatine kinase. This p.Gly144Trp mutation is equivalent to a loss of function and results in failure of GOSR2 protein to localize to the cis-Golgi.
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- 2011
125. Investigation of the 15q13.3 CNV as a genetic modifier for familial epilepsies with variable phenotypes
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Mulley, John C, Scheffer, Ingrid E, Desai, Tarishi, Bayly, Marta A, Grinton, Bronwyn E, Vears, Danya F, Berkovic, Samuel F, and Dibbens, Leanne M
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genetic heterogeneity ,genetic modifier ,15q13.3 ,copy number variant ,clinical heterogeneity - Abstract
Incomplete penetrance and variable phenotypic expression are characteristic of a number of syndromes of familial epilepsy. The purpose of the present investigation is to determine if the 15q13.3 copy number deletion functions as a locus modifying the epilepsy phenotype caused by other known or presumed pathogenic mutations segregating in families with epilepsies. No 15q13.3 microdeletions were detected in 756 affected or definite obligate carrier individuals across 151 families selected on the basis of having multiple members affected with epilepsy and showing a range of seizure types. Therefore, the 15q13.3 microdeletion does not act as a genetic modifier in this cohort of families and is not responsible for any of the genetic heterogeneity hypothesized to account for failure to detect linkage in previous genome-wide scans in five of the larger families included in this study. Refereed/Peer-reviewed
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- 2011
126. Australian public perspectives on genomic data governance: responsibility, regulation, and logistical considerations.
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Lynch F, Meng Y, Best S, Goranitis I, Savulescu J, Gyngell C, and Vears DF
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- Humans, Australia, Focus Groups, Information Dissemination, Genomics, Computer Security
- Abstract
Genomic sequencing generates huge volumes of data, which may be collected or donated to form large genomic databases. Such information can be stored for future use, either for the data donor themselves or by researchers to help improve our understanding of the genetic basis of disease. Creating datasets of this magnitude and diversity is only possible if patients, their families, and members of the public worldwide share their data. However, there is no consensus on the best technical approach to data sharing that also minimises risks to individuals and exploration of stakeholders' views on aspects of genomic data governance models-the ways genomic data is stored, managed, shared and used-has been minimal. To address this need, we conducted focus groups with 39 members of the Australian public exploring their views and preferences for different aspects of genomic data governance models. We found that consent and control were essential to participants, as they wanted the option to choose who had access to their data and for what purposes. Critically, participants wanted a trustworthy body to enforce regulation of data storage, sharing and usage. While participants recognised the importance of data accessibility, they also expressed a strong desire for data security. Finally, financial responsibility for data storage raised concerns for inequity as well as organisations and individuals using data in ethically contentious ways to generate profit. Our findings highlight some of the trade-offs that need to be considered in the development of genomic data governance systems., (© 2023. The Author(s), under exclusive licence to European Society of Human Genetics.)
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- 2024
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127. Two-step offer and return of multiple types of additional genomic findings to families after ultrarapid trio genomic testing in the acute care setting: a study protocol.
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Bouffler SE, Lee L, Lynch F, Martyn M, Lynch E, Macciocca I, Curnow L, McCorkell G, Lunke S, Chong B, Marum JE, Delatycki M, Downie L, Goranitis I, Vears DF, Best S, Clausen M, Bombard Y, Stark Z, and Gaff CL
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- Adult, Child, Humans, Australia, Critical Care, Genetic Testing, Genomics, Genetic Counseling
- Abstract
Introduction: As routine genomic testing expands, so too does the opportunity to look for additional health information unrelated to the original reason for testing, termed additional findings (AF). Analysis for many different types of AF may be available, particularly to families undergoing trio genomic testing. The optimal model for service delivery remains to be determined, especially when the original test occurs in the acute care setting., Methods and Analysis: Families enrolled in a national study providing ultrarapid genomic testing to critically ill children will be offered analysis for three types of AF on their stored genomic data: paediatric-onset conditions in the child, adult-onset conditions in each parent and reproductive carrier screening for the parents as a couple. The offer will be made 3-6 months after diagnostic testing. Parents will have access to a modified version of the Genetics Adviser web-based decision support tool before attending a genetic counselling appointment to discuss consent for AF. Parental experiences will be evaluated using qualitative and quantitative methods on data collected through surveys, appointment recordings and interviews at multiple time points. Evaluation will focus on parental preferences, uptake, decision support use and understanding of AF. Genetic health professionals' perspectives on acceptability and feasibility of AF will also be captured through surveys and interviews., Ethics and Dissemination: This project received ethics approval from the Melbourne Health Human Research Ethics Committee as part of the Australian Genomics Health Alliance protocol: HREC/16/MH/251. Findings will be disseminated through peer-review journal articles and at conferences nationally and internationally., Competing Interests: Competing interests: The authors declare no competing interests. YB and MC are co-Founders of Genetics Adviser, Inc., (© Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY. Published by BMJ.)
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- 2023
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128. Communicating genetic information to family members: analysis of consent forms for diagnostic genomic sequencing.
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Phillips A, Niemiec E, Howard HC, Kagkelari K, Borry P, and Vears DF
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- Consent Forms standards, Genetic Counseling ethics, Genetic Privacy ethics, Humans, Consent Forms ethics, Disclosure, Family psychology, Genetic Testing ethics, Sequence Analysis, DNA ethics
- Abstract
Communicating results from genomic sequencing to family members can play an essential role allowing access to surveillance, prevention, treatment or prophylactic measures. Yet, many patients struggle with communication of these results and it is unclear to what extent this is discussed during the consent process. We conducted an online systematic search and used content analysis to explore how consent forms for genomic sequencing address communication of genetic information to family members. Our search yielded 68 consent forms from 11 countries. Although 57 forms alluded to the familial nature of results, forms varied in their discussion of the potential familial implications of results. Only 11 addressed communication of genetic information with family members, with differences in who would be responsible for this process. Several forms offered patients options regarding communication, even in countries where national guidelines and legislation allow for the disclosure of results in the absence of patient consent. These findings are concerning because they show how forms may potentially mislead patients and health care professionals about whether communication is permissible in cases where the patient does not consent. We suggest that providers and health care professionals reconsider how consent forms address communicating genetic information to family members.
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- 2020
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129. Members of the public in the USA, UK, Canada and Australia expressing genetic exceptionalism say they are more willing to donate genomic data.
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Middleton A, Milne R, Howard H, Niemiec E, Robarts L, Critchley C, Nicol D, Prainsack B, Atutornu J, Vears DF, Smith J, Steed C, Bevan P, Scott ER, Bobe J, Goodhand P, Kleiderman E, Thorogood A, and Morley KI
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- Adult, Australia, Canada, Female, Genetic Testing ethics, Genome, Human, Humans, Male, Middle Aged, United Kingdom, United States, Genetic Privacy psychology, Health Knowledge, Attitudes, Practice, Information Dissemination, Public Opinion
- Abstract
Public acceptance is critical for sharing of genomic data at scale. This paper examines how acceptance of data sharing pertains to the perceived similarities and differences between DNA and other forms of personal data. It explores the perceptions of representative publics from the USA, Canada, the UK and Australia (n = 8967) towards the donation of DNA and health data. Fifty-two percent of this public held 'exceptionalist' views about genetics (i.e., believed DNA is different or 'special' compared to other types of medical information). This group was more likely to be familiar with or have had personal experience with genomics and to perceive DNA information as having personal as well as clinical and scientific value. Those with personal experience with genetics and genetic exceptionalist views were nearly six times more likely to be willing to donate their anonymous DNA and medical information for research than other respondents. Perceived harms from re-identification did not appear to dissuade publics from being willing to participate in research. The interplay between exceptionalist views about genetics and the personal, scientific and clinical value attributed to data would be a valuable focus for future research.
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- 2020
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130. Exploration of genetic health professional - laboratory specialist interactions in diagnostic genomic sequencing.
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Vears DF, Sénécal K, and Borry P
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- Australia, Canada, Europe, Genome, Human, High-Throughput Nucleotide Sequencing, Humans, Surveys and Questionnaires, Genetic Counseling, Genetic Testing, Genetics, Medical, Genomics, Health Personnel education
- Abstract
Like any new technology, rapid integration of genomic sequencing (GS) into the clinical setting can pose challenges for genetic health professionals (GHPs) using it to diagnose patients. We conducted semi-structured interviews with 31 clinical geneticists and genetic counsellors across Europe, Australia and Canada to gain a better understanding of the issues they were experiencing when requesting GS and receiving reports from laboratories. There was a spectrum of interactions between genetic health professionals and laboratories. This ranged from those that almost exclusively request sequencing from the laboratory that is affiliated with their genetic service, to those who do not have access to exome sequencing 'in-house' and instead send patient samples to a selection of different external laboratories. In general, a closer interaction between the clinicians and the laboratory scientists increased the involvement of the clinicians in the analysis/interpretation process. This appeared to lead to fewer, but more clinically relevant variants being reported, and greater GHP satisfaction in what is reported. Our findings suggest that GHPs consider integration of clinical expertise into the analysis/interpretation process is critical to ensure that the variants reported are of high clinical significance to patients. They also highlight the importance of providing GHPs with training in report interpretation., (Copyright © 2019 Elsevier Masson SAS. All rights reserved.)
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- 2020
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131. Kufs disease due to mutation of CLN6: clinical, pathological and molecular genetic features.
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Berkovic SF, Oliver KL, Canafoglia L, Krieger P, Damiano JA, Hildebrand MS, Morbin M, Vears DF, Sofia V, Giuliano L, Garavaglia B, Simonati A, Santorelli FM, Gambardella A, Labate A, Belcastro V, Castellotti B, Ozkara C, Zeman A, Rankin J, Mole SE, Aguglia U, Farrell M, Rajagopalan S, McDougall A, Brammah S, Andermann F, Andermann E, Dahl HM, Franceschetti S, and Carpenter S
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- Adolescent, Adult, Age of Onset, Aged, Brain ultrastructure, Female, Humans, Male, Middle Aged, Mutation, Neuronal Ceroid-Lipofuscinoses diagnostic imaging, Neuronal Ceroid-Lipofuscinoses pathology, Survival Rate, Young Adult, Membrane Proteins genetics, Neuronal Ceroid-Lipofuscinoses diagnosis, Neuronal Ceroid-Lipofuscinoses genetics
- Abstract
Kufs disease is the major adult form of neuronal ceroid lipofuscinosis, but is rare and difficult to diagnose. Diagnosis was traditionally dependent on the demonstration of characteristic storage material, but distinction from normal age-related accumulation of lipofuscin can be challenging. Mutation of CLN6 has emerged as the most important cause of recessive Kufs disease but, remarkably, is also responsible for variant late infantile ceroid lipofuscinosis. Here we provide a detailed description of Kufs disease due to CLN6 pathogenic variants. We studied 20 cases of Kufs disease with CLN6 pathogenic variants from 13 unrelated families. Mean age of onset was 28 years (range 12-51) with bimodal peaks in teenage and early adult life. The typical presentation was of progressive myoclonus epilepsy with debilitating myoclonic seizures and relatively infrequent tonic-clonic seizures. Patients became wheelchair-bound with a mean 12 years post-onset. Ataxia was the most prominent motor feature. Dementia appeared to be an invariable accompaniment, although it could take a number of years to manifest and occasionally cognitive impairment preceded myoclonic seizures. Patients were usually highly photosensitive on EEG. MRI showed progressive cerebral and cerebellar atrophy. The median survival time was 26 years from disease onset. Ultrastructural examination of the pathology revealed fingerprint profiles as the characteristic inclusions, but they were not reliably seen in tissues other than brain. Curvilinear profiles, which are seen in the late infantile form, were not a feature. Of the 13 unrelated families we observed homozygous CLN6 pathogenic variants in four and compound heterozygous variants in nine. Compared to the variant late infantile form, there was a lower proportion of variants that predicted protein truncation. Certain heterozygous missense variants in the same amino acid position were found in both variant late infantile and Kufs disease. There was a predominance of cases from Italy and surrounding regions; this was partially explained by the discovery of three founder pathogenic variants. Clinical distinction of type A (progressive myoclonus epilepsy) and type B (dementia with motor disturbance) Kufs disease was supported by molecular diagnoses. Type A is usually caused by recessive pathogenic variants in CLN6 or dominant variants in DNAJC5. Type B Kufs is usually associated with recessive CTSF pathogenic variants. The diagnosis of Kufs remains challenging but, with the availability of genetic diagnosis, this will largely supersede the use of diagnostic biopsies, particularly as biopsies of peripheral tissues has unsatisfactory sensitivity and specificity.
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- 2019
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132. Predictive Psychiatric Genetic Testing in Minors: An Exploration of the Non-Medical Benefits.
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Manzini A and Vears DF
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- Adolescent, Age Factors, Child, Dissent and Disputes, Humans, Personal Autonomy, Risk Assessment, Ethics, Medical, Genetic Testing ethics, Mental Disorders genetics, Minors
- Abstract
Predictive genetic testing for susceptibility to psychiatric conditions is likely to become part of standard practice. Because the onset of most psychiatric diseases is in late adolescence or early adulthood, testing minors could lead to early identification that may prevent or delay the development of these disorders. However, due to their complex aetiology, psychiatric genetic testing does not provide the immediate medical benefits that current guidelines require for testing minors. While several authors have argued non-medical benefits may play a crucial role in favour of predictive testing for other conditions, little research has explored such a role in psychiatric disorders. This paper outlines the potential non-medical benefits and harms of psychiatric genetic testing in minors in order to consider whether the non-medical benefits could ever make such testing appropriate. Five non-medical themes arise in the literature: psychological impacts, autonomy/self-determination, implications of the biomedical approach, use of financial and intellectual resources, and discrimination. Non-medical benefits were prominent in all of them, suggesting that psychiatric genetic testing in minors may be appropriate in some circumstances. Further research needs to empirically assess these potential non-medical benefits, incorporate minors in the debate, and include normative reflection to evaluate the very purposes and motivations of psychiatric genetic testing in minors.
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- 2018
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