237 results on '"Otero, Roberto"'
Search Results
202. An STM study of molecular exchange processes in organic thin film growth.
- Author
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Ecija, David, Gallego, José M., Martín, Nazario, Otero, Roberto, and Miranda, Rodolfo
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MOLECULES ,MONOMOLECULAR films ,SEDIMENTATION & deposition ,TETRATHIAFULVALENE derivatives ,MICROSCOPY ,GOLD ,SCANNING tunneling microscopy - Abstract
The growth of a fullerene derivative (PCBM) on top of a layer of a tetrathiafulvalene (TTF) derivative previously deposited on Au(111) has been studied by scanning tunneling microscopy (STM). The results show that the preferential interaction with the gold substrate induces the exchange of PCBM molecules with the exTTF monolayer, expelling exTTF molecules to the outer surface. This exchange process is forbidden when the thickness of the exTTF layer increases above the monolayer, and the larger surface energy of PCBM leads to the growth of 3D islands. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
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203. Shape Evolution of CdSe Nanoparticles Controlled byHalogen Compounds.
- Author
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Meyns, Michaela, Iacono, Fabiola, Palencia, Cristina, Geweke, Jan, Coderch, MauricioD., Fittschen, Ursula E. A., Gallego, José M., Otero, Roberto, Juárez, Beatriz H., and Klinke, Christian
- Published
- 2014
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204. Formation of Self-Assembled Chains of Tetrathiafulvalene on a Cu(100) Surface.
- Author
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Yang Wang, Urban, Christian, Rodríguez-Fernández, Jonathan, Gallego, José M., Otero, Roberto, Martín, Nazario, Miranda, Rodolfo, Alcamí, Manuel, and Martín, Fernando
- Published
- 2011
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205. Charge-transfer-induced structural rearrangements at both sides of organic/metal interfaces.
- Author
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Tzu-Chun Tseng, Urban, Christian, Yang Wang, Otero, Roberto, Tait, Steven L., Alcamí, Manuel, Écija, David, Trelka, Marta, Gallego, José María, Nian Lin, Konuma, Mitsuharu, Starke, Ulrich, Nefedov, Alexei, Langner, Alexander, Wöll, Christof, Herranz, María Ángeles, Martín, Fernando, Martín, Nazario, Kern, Klaus, and Miranda, Rodolfo
- Subjects
SURFACE chemistry ,OPTOELECTRONIC devices ,ELECTRON diffraction ,PHOTOEMISSION ,SPECTRUM analysis ,ABSORPTION ,METALS ,X-rays ,DIODES - Abstract
Organic/metal interfaces control the performance of many optoelectronic organic devices, including organic light-emitting diodes or field-effect transistors. Using scanning tunnelling microscopy, low-energy electron diffraction, X-ray photoemission spectroscopy, near-edge X-ray absorption fine structure spectroscopy and density functional theory calculations, we show that electron transfer at the interface between a metal surface and the organic electron acceptor tetracyano-p-quinodimethane leads to substantial structural rearrangements on both the organic and metallic sides of the interface. These structural modifications mediate new intermolecular interactions through the creation of stress fields that could not have been predicted on the basis of gas-phase neutral tetracyano-p-quinodimethane conformation. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
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206. One-Dimensional Assembly and Selective Orientation of Lander Molecules on an OCu Template
- Author
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Otero, Roberto, Naitoh, Yoshitaka, Rosei, Federico, Jiang, Ping, Thostrup, Peter, Gourdon, André, Lægsgaard, Erik, Stensgaard, Ivan, Joachim, Christian, and Besenbacher, Flemming
- Abstract
No Abstract
- Published
- 2004
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207. Subphthalocyanine-based nanocrystalsElectronic supplementary information (ESI) available: Experimental details, STM images of honeycomb defects and steric model of the triangular structures. See DOI: 10.1039/c1cc11658d.
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Trelka, Marta, Medina, Anaïs, Écija, David, Urban, Christian, Gröning, Oliver, Fasel, Roman, Gallego, José M., Claessens, Christian G., Otero, Roberto, Torres, Tomás, and Miranda, Rodolfo
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PHTHALOCYANINES ,NANOCRYSTALS ,SCANNING tunneling microscopy ,HONEYCOMB structures ,CRYSTAL defects ,VACUUM ,COPPER surfaces - Abstract
Ultra high vacuum scanning tunnelling microscopy revealed chlorosubphthalocyanine to self-organize into discrete well-defined bilayer and trilayer triangular nanocrystallites when evaporated onto a Cu(111) surface. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
208. Directional picoantenna behavior of tunnel junctions formed by an atomic-scale surface defect.
- Author
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Mateos, David, Jover, Oscar, Varea, Miguel, Lauwaet, Koen, Granados, Daniel, Miranda, Rodolfo, Fernandez-Dominguez, Antonio I., Martin-Jimenez, Alberto, and Otero, Roberto
- Subjects
- *
SCANNING tunneling microscopy , *METALLIC surfaces , *ANTENNAS (Electronics) , *SURFACE defects , *OPTICAL antennas - Abstract
Plasmonic nanoantennas have attracted much attention lately, among other reasons because of the directionality of light emitted by fluorophores coupled to their localized surface plasmon resonances. Plasmonic picocavities, i.e., cavities with mode volumes below 1 nm3, could act as enhanced antennas due to their extreme field confinement, but the directionality on their emission is difficult to control. In this work, we show that the plasmonic picocavity formed between the tip of a scanning tunneling microscope and a metal surface with a monoatomic step shows directional emission profiles and, thus, can be considered as a realization of a picoantenna. Electromagnetic calculations demonstrate that the observed directionality arises from the reshaping and tilting of the surface charges induced at the scanning tip due to the atomic step. Our results pave the way to exploiting picoantennas as an efficient way for the far-field probing and control of light-matter interactions below the nanoscale. [ABSTRACT FROM AUTHOR]
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- 2024
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209. Evaluación de pastos nativos de los páramos bajo cuatro sistemas de pastoreo con ovejas
- Author
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Maner, Jerome H., Chaverra Gil, Hernán, and Bautista Otero, Roberto Bautista
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Alimentación animal - L02 ,Páramos ,Permanentes ,Pastoreo ,Pastizal natural ,Ovinos - Abstract
En la Granja San Jorge (Cundinamarca, Colombia), se realiza un experimento de pastoreo con pastos nativos de los parámos bajo 4 sistemas de rotación con ovinos, con el fin de conocer cuál era el más propicio. Se emplea un diseño experimental de bloques al azar con 3 repeticiones. Los tratamientos empleados son: pastoreo continuo, pastoreo alterno con 50 días de ocupación y 50 de descanso, pastoreo en rotación con 3 potreros, cada uno con período de ocupación de 25 días y de descanso de 50, pastoreo en rotación con 6 potreros, cada uno con un período de ocupación de 10 días y de descanso 50. Los animales se pesan cada 14 días y se hace el ajuste de carga. El experimento dura 308 días. La rotación de 6 potreros dá el mayor número de animales/ha (12), siguiendo el de 3 potreros (11), el alterno (10) y el continuo (7.5). De acuerdo con la capacidad de carga, las mayores producciones se obtienen con el sistema de 6 potreros (63.588 kg) y con 3 potreros (61.160 kg). La mayor producción de carne se obtiene con el sistema de 3 potreros (283.063 kg) y el de 6 potreros (257.724 kg) Pastos y forrajes
- Published
- 1970
210. Sermón de Nuestra Señora del Rosario
- Author
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González Otero, Roberto
- Subjects
Capilla ,Sermones ,Fray Cristobal de Torres ,Homenajes ,La Bordadita - Abstract
Sermón predicado en la capilla del colegio, el 15 de octubre de 1916, resalta la importancia de la Bordadita en el Claustro.
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- 1917
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211. Charge-transfer-induced structural rearrangements at both sides of organic/metal interfaces
- Author
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Tseng, Tzu-Chun, Urban, Christian, Wang, Yang, Otero, Roberto, Tait, Steven L., Alcami, Manuel, Ecija, David, Trelka, Marta, Maria Gallego, Jose, Lin, Nian, Konuma, Mitsuharu, Starke, Ulrich, Nefedov, Alexei, Langner, Alexander, Woell, Christof, Angeles Herranz, Maria, Martin, Fernando, Martin, Nazario, Kern, Klaus, and Miranda, Rodolfo
- Subjects
Surfaces ,States ,Energy ,Ttf-Tcnq ,Molecule-Metal Interfaces ,Augmented-Wave Method ,Solar-Cells - Abstract
Organic/metal interfaces control the performance of many optoelectronic organic devices, including organic light-emitting diodes or field-effect transistors. Using scanning tunnelling microscopy, low-energy electron diffraction, X-ray photoemission spectroscopy, near-edge X-ray absorption fine structure spectroscopy and density functional theory calculations, we show that electron transfer at the interface between a metal surface and the organic electron acceptor tetracyano-p-quinodimethane leads to substantial structural rearrangements on both the organic and metallic sides of the interface. These structural modifications mediate new intermolecular interactions through the creation of stress fields that could not have been predicted on the basis of gas-phase neutral tetracyano-p-quinodimethane conformation.
212. Understanding the disorder of the DNA base cytosine on the Au(111) surface
- Author
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Kelly, Ross E. A., Lukas, Maya, Kantorovich, Lev N., Otero, Roberto, Xu, Wei, Mura, Manuela, Laegsgaard, Erik, Stensgaard, Ivan, Besenbacher, Flemming, Kelly, Ross E. A., Lukas, Maya, Kantorovich, Lev N., Otero, Roberto, Xu, Wei, Mura, Manuela, Laegsgaard, Erik, Stensgaard, Ivan, and Besenbacher, Flemming
- Abstract
Using ultrahigh vacuum scanning tunneling microscopy (STM) and ab initio density functional theory, we have investigated in detail structures formed by cytosine on the Au(111) surface in clean ultrahigh vacuum conditions. In spite of the fact that the ground state of this DNA base on the surface is shown to be an ordered arrangement of cytosine one-dimensional branches (filaments), this structure has never been observed in our STM experiments. Instead, disordered structures are observed, which can be explained by only a few elementary structural motifs: filaments, five- and sixfold rings, which randomly interconnect with each other forming bent chains, T junctions, and nanocages. The latter may have trapped smaller structures inside. The formation of such an unusual assembly is explained by simple kinetic arguments as a liquid-glass transition. © 2008 American Institute of Physics.
213. An investigation into the interactions between self-assembled adenine molecules and a Au(111) surface
- Author
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Kelly, Ross E. A., Xu, Wei, Lukas, Maya, Otero, Roberto, Mura, Manuela, Lee, Young-Joo, Laegsgaard, Erik, Stensgaard, Ivan, Kantorovich, Lev N., Besenbacher, Flemming, Kelly, Ross E. A., Xu, Wei, Lukas, Maya, Otero, Roberto, Mura, Manuela, Lee, Young-Joo, Laegsgaard, Erik, Stensgaard, Ivan, Kantorovich, Lev N., and Besenbacher, Flemming
- Abstract
Two molecular phases of the DNA base adenine (A) on a Au(111) surface are observed by using STM under ultrahigh-vacuum conditions. One of these phases is reported for the first time. A systematic approach that considers all possible gas-phase two-dimensional arrangements of A molecules connected by double hydrogen bonds with each other and subsequent ab initio DFT calculations are used to characterize and identify the two phases. The influence of the gold surface on the structure of A assemblies is also discussed. DFT is found to predict a smooth corrugation potential of the gold surface that will enable A molecules to move freely across the surface at room temperature. This conclusion remains unchanged if van der Waals interaction between A and gold is also approximately taken into account. DFT calculations of the A pairs on the Au(111) surface show its negligible effect on the hydrogen bonding between the molecules. These results justify the gas-phase analysis of possible assemblies on flat metal surfaces. Nevertheless, the fact that it is not the most stable gas-phase monolayer that is actually observed on the gold surface indicates that the surface still plays a subtle role, which needs to be property addressed.
214. ChemInform Abstract: Molecular Self-Assembly at Solid Surfaces.
- Author
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Otero, Roberto, Gallego, Jose Maria, Vazquez de Parga, Amadeo L., Martin, Nazario, and Miranda, Rodolfo
- Published
- 2012
- Full Text
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215. La gestión financiera y su influencia en la recuperación de los créditos de la cooperativa de ahorro y crédito Santo Cristo de Bagazán - Sede Chachapoyas – 2020
- Author
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Reyna Reynaga, Damaris, Valqui Santillán, Katerine Jhordany, and Oblitas Otero, Roberto Carlos
- Subjects
purl.org/pe-repo/ocde/ford#5.02.04 [http] ,Gestión Financiera ,Cooperativa de Ahorro y Crédito ,Cartera de clientes - Abstract
Se planteó como objetivo: Determinar la relación entre la gestión financiera y la recuperación de los créditos de la Cooperativa de Ahorro y Crédito Santo Cristo de Bagazán sede Chachapoyas – 2020. Asimismo, utilizar una investigación de diseño no correlacional, de corte transversal, con enfoque cuantitativo, de tipo aplicada y nivel correlacional causal, la población estuvo conformada por los trabajadores, siendo a quienes se les aplicó el cuestionario. Los resultados evidenciaron que el valor del Rho de Spearman obtenido es de 0,645 y el valor de la Sig., es menor al 0,05, llegando a concluir que el nivel de relación de la gestión financiera es significativa directa con la recuperación de créditos, esto revela que, mientras se lleve a cabo una gestión financiera eficiente entonces se podrá recuperar los créditos otorgados a los clientes, permitiendo a la entidad maximizar sus utilidades. Moyobamba Escuela Profesional de Contabilidad Finanzas
- Published
- 2021
216. Zwei-dimensionale Lanthanoid-basierte metallorganische Netzwerke an Oberflächen
- Author
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Urgel Tendero, José Ignacio, Barth, Johannes V. (Prof. Dr.), Lackinger, Markus (Priv.-Doz. Dr.), and Otero, Roberto (Prof., Ph.D.)
- Subjects
Physik ,ddc:530 - Abstract
The design of surface-confined metal-organic nanoarchitectures is a relevant research field providing prospects in functional materials. In this thesis, we have investigated lanthanide-directed metal-organic networks amenable to scanning tunneling microscopy, by exploiting the coordination between appropriate molecular linkers and lanthanide elements. To this aim, cerium (Ce), gadolinium (Gd) and europium (Eu) were chosen as f-block elements, whereas molecular species equipped with terminal carbonitrile or carboxylate functional groups are utilized as linkers. Die Entwicklung von metall-organischen Nanostrukturen auf Oberflächen ist ein wichtiges Forschungsfeld das viele Perspektiven im Hinblick auf funktionelle Materialien eröffnet. Während dieser Doktorarbeit wurden metall-organische Netzwerke untersucht, die durch Atome der Lanthanoid Gruppe verbunden sind und mit einem Rastertunnelmikroskop abgebildet werden können. Dabei wurde die Koordination zwischen geeigneten Molekülen und Elemente der Lanthanoide ausgenutzt. Für diesen Zweck wurden die Elemente Cer (Ce), Gadolinium (Gd) und Europium (Eu) ausgewählt sowie Moleküle mit Carbonitril- oder Carboxylat-Endgruppen als funktionelle Gruppen verwendet.
- Published
- 2016
217. Nanotube-Like Electronic States in [5,5]-C 90 Fullertube Molecules.
- Author
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Jover Ó, Martín-Jiménez A, Franklin HM, Koenig RM, Martínez JI, Martín N, Lauwaet K, Miranda R, Gallego JM, Stevenson S, and Otero R
- Abstract
Fullertubes, that is, fullerenes consisting of a carbon nanotube moiety capped by hemifullerene ends, are emerging carbon nanomaterials whose properties show both fullerene and carbon nanotube (CNT) traits. Albeit it may be expected that their electronic states show a certain resemblance to those of the extended nanotube, such a correlation has not yet been found or described. Here it shows a scanning tunneling microscopy (STM) and spectroscopy (STS) characterization of the adsorption, self-assembly, and electronic structure of 2D arrays of [5,5]-C
90 fullertube molecules on two different noble metal surfaces, Ag(111) and Au(111). The results demonstrate that the shape of the molecular orbitals of the adsorbed fullertubes corresponds closely to those expected for isolated species on the grounds of density functional theory calculations. Moreover, a comparison between the electronic density profiles in the bands of the extended [5,5]-CNT and in the molecules reveals that some of the frontier orbitals of the fullertube molecules can be described as the result of the quantum confinement imposed by the hemifullerene caps to the delocalized band states in the extended CNT. The results thus provide a conceptual framework for the rational design of custom fullertube molecules and can potentially become a cornerstone in the understanding of these new carbon nanoforms., (© 2023 The Authors. Small published by Wiley-VCH GmbH.)- Published
- 2024
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218. Selectively Addressing Plasmonic Modes and Excitonic States in a Nanocavity Hosting a Quantum Emitter.
- Author
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Martín-Jiménez A, Jover Ó, Lauwaet K, Granados D, Miranda R, and Otero R
- Abstract
Controlling the interaction between the excitonic states of a quantum emitter and the plasmonic modes of a nanocavity is key for the development of quantum information processing devices. In this Letter we demonstrate that the tunnel electroluminescence of electrically insulated C
60 nanocrystals enclosed in the plasmonic nanocavity at the junction of a scanning tunneling microscope can be switched from a broad emission spectrum, revealing the plasmonic modes of the cavity, to a narrow band emission, displaying only the excitonic states of the C60 molecules by changing the bias voltage applied to the junction. Interestingly, excitonic emission dominates the spectra in the high-voltage region in which the simultaneously acquired inelastic rate is low, demonstrating that the excitons cannot be created by an inelastic tunnel process. These results point toward new possible mechanisms for tunnel electroluminescence of quantum emitters and offer new avenues to develop electrically tunable nanoscale light sources.- Published
- 2022
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219. Electronic Temperature and Two-Electron Processes in Overbias Plasmonic Emission from Tunnel Junctions.
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Martín-Jiménez A, Lauwaet K, Jover Ó, Granados D, Arnau A, Silkin VM, Miranda R, and Otero R
- Abstract
The accurate determination of electronic temperatures in metallic nanostructures is essential for many technological applications, like plasmon-enhanced catalysis or lithographic nanofabrication procedures. In this Letter, we demonstrate that the electronic temperature can be accurately measured by the shape of the tunnel electroluminescence emission edge in tunnel plasmonic nanocavities, which follows a universal thermal distribution with the bias voltage as the chemical potential of the photon population. A significant deviation between electronic and lattice temperatures is found below 30 K for tunnel currents larger than 15 nA. This deviation is rationalized as the result of a two-electron process in which the second electron excites plasmon modes with an energy distribution that reflects the higher temperature following the first tunneling event. These results dispel a long-standing controversy on the nature of overbias emission in tunnel junctions and adds a new method for the determination of electronic temperatures and quasiparticle dynamics.
- Published
- 2021
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220. Effect of 8-week of dietary micronutrient supplementation on gene expression in elite handball athletes.
- Author
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Molina-López J, Ricalde MAQ, Hernández BV, Planells A, Otero R, and Planells E
- Subjects
- Adult, Humans, Male, Real-Time Polymerase Chain Reaction, Young Adult, Athletes, Athletic Performance, Dietary Supplements, Micronutrients pharmacology, Minerals pharmacokinetics, Transcriptome drug effects, Vitamins pharmacology
- Abstract
Purpose: A study was made of the changes in gene expression in elite handball athletes, comparing gene modulation before, after and in the absence of an 8-week nutritional intervention with multivitamin/mineral supplements., Methods: Thirteen elite handball athletes (aged 22.9 ± 2.7 years) and 13 sedentary controls (aged 20.9 ± 2.8 years) were included. Three timepoints were established: T0 (baseline conditions); T8 (after 8 weeks of supplementation with a multivitamin/mineral complex); and T16 (after 8 weeks in the absence of supplementation). The expressions of a total 112 of genes were evaluated by RT-qPCR analysis with the QuantStudioTM 12K Flex Real-Time PCR System., Results: The analysis revealed different gene regulation profiles of genes implicated in cell communication, cell energy metabolism, inflammation and the immune system, oxidative stress and muscle function in athletes compared to sedentary controls under resting conditions (upregulated genes: effect size = large, ƞ2 = 1.011 to 1.398, p < 0.05; downregulated genes: effect size = large, ƞ2 = 0.846 and 1.070, p < 0.05, respectively). The nutritional intervention encouraged gene upregulation in elite athletes (p < 0.05). In a follow-up investigation, the IRAK1, CD81, ITGB1, ACADS PDHA2 and GPX1 genes were downregulated in athletes, with a moderate main effect for time-by-group interaction (ηP2 = 0.099 to 0.133; p < 0.05). Additionally, nutritional genes such as MTHFR and THTPA revealed a moderate effect over all the timepoints and group interaction in the study (ηP2 = 0.070 to 0.092; p < 0.05)., Conclusions: Elite handball athletes showed a different expression profile in reference to key genes implicated in several sports performance-related functions compared to the sedentary controls, in addition to modulation of gene expression after multivitamin/mineral supplementation., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
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221. Unveiling the radiative local density of optical states of a plasmonic nanocavity by STM.
- Author
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Martín-Jiménez A, Fernández-Domínguez AI, Lauwaet K, Granados D, Miranda R, García-Vidal FJ, and Otero R
- Abstract
Atomically-sharp tips in close proximity of metal surfaces create plasmonic nanocavities supporting both radiative (bright) and non-radiative (dark) localized surface plasmon modes. Disentangling their respective contributions to the total density of optical states remains a challenge. Electroluminescence due to tunnelling through the tip-substrate gap could allow the identification of the radiative component, but this information is inherently convoluted with that of the electronic structure of the system. In this work, we present a fully experimental procedure to eliminate the electronic-structure factors from the scanning tunnelling microscope luminescence spectra by confronting them with spectroscopic information extracted from elastic current measurements. Comparison against electromagnetic calculations demonstrates that this procedure allows the characterization of the meV shifts experienced by the nanocavity plasmonic modes under atomic-scale gap size changes. Therefore, the method gives access to the frequency-dependent radiative Purcell enhancement that a microscopic light emitter would undergo when placed at such nanocavity.
- Published
- 2020
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222. Prevalence of non-aromatic carbonaceous molecules in the inner regions of circumstellar envelopes.
- Author
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Martínez L, Santoro G, Merino P, Accolla M, Lauwaet K, Sobrado J, Sabbah H, Pelaez RJ, Herrero VJ, Tanarro I, Agúndez M, Martín-Jimenez A, Otero R, Ellis GJ, Joblin C, Cernicharo J, and Martín-Gago JA
- Abstract
Evolved stars are a foundry of chemical complexity, gas and dust that provides the building blocks of planets and life, and dust nucleation first occurs in their photosphere. Despite their importance, the circumstellar regions enveloping these stars remain hidden to many observations, thus dust formation processes are still poorly understood. Laboratory astrophysics provides complementary routes to unveil these chemical processes, but most experiments rely on combustion or plasma decomposition of molecular precursors under physical conditions far removed from those in space. We have built an ultra-high vacuum machine combining atomic gas aggregation with advanced in-situ characterization techniques to reproduce and characterize the bottom-up dust formation process. We show that carbonaceous dust analogues formed from low-pressure gas-phase condensation of C atoms in a hydrogen atmosphere, in a C/H
2 ratio similar to that reported for evolved stars, leads to the formation of amorphous C nanograins and aliphatic C-clusters. Aromatic species or fullerenes do not form effectively under these conditions, raising implications for the revision of the chemical mechanisms taking place in circumstellar envelopes., Competing Interests: Competing interests. The authors declare no competing interests.- Published
- 2020
- Full Text
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223. Characterizing the CdSe nanodots in the vicinity of the monolayer covering range.
- Author
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Capitán MJ, Álvarez J, Puebla S, Spilsbury MJ, Conde JJ, Juárez BH, and Otero R
- Abstract
During the past decade, due to their large number of technological applications, a large number of research studies have been devoted to CdSe nanocrystal (NC) systems. Most of the studies of NC grown on substrates present in the literature correspond to a submonolayer coverage. However, interparticle interactions and, consequently, system morphology and its properties can change at higher coverage regime. We combine the X-ray diffraction technique at wide and small angle range with direct space AFM microscopy for the morphological characterization of samples in the monolayer vicinity. We conclude that the CdSe preserves its nanoparticle character and its pyramid shape. This nanoparticle character is also reflected in the CdSe Density Of States (DOS) measured by UPS. We have shown that the particle CdSe atoms are perfectly ordered. They form nanocrystals with a wurtzite structure, grown with an axial and lateral matching with the HOPG substrate lattice in a hexagonal arrangement up to the monolayer coverage, with a strong interaction with the substrate. Above the monolayer coverage this epitaxial match is looser, resulting in a 3D disorder growth., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2019
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224. A Comparative Computational Study of the Adsorption of TCNQ and F4-TCNQ on the Coinage Metal Surfaces.
- Author
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Otero R, Miranda R, and Gallego JM
- Abstract
The adsorption of tetracyanoquinodimethane and of the closely related derivative tetrafluorotetracyanoquinodimethane on the (111) surfaces of the coinage metals, namely, copper, silver, and (unreconstructed) gold, has been studied by dispersion-corrected ab initio density functional theory calculations. In order to separate the molecule-substrate interaction from the effects of molecule-molecule interaction, only the isolated molecules are considered. The results show that, in this case, the strength of the interaction of both molecules with the surfaces decreases in the expected order Cu > Ag > Au. The total amount of charge transfer, however, behaves in a different way, being larger for Ag and smaller for Cu and Au. This trend can be explained by a combination of the differences in the work functions of the three metals and the amount of backdonation between the molecule and the metal., Competing Interests: The authors declare no competing financial interest., (Copyright © 2019 American Chemical Society.)
- Published
- 2019
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225. Long-Range Orientational Self-Assembly, Spatially Controlled Deprotonation, and Off-Centered Metalation of an Expanded Porphyrin.
- Author
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Cirera B, Trukhina O, Björk J, Bottari G, Rodríguez-Fernández J, Martin-Jimenez A, Islyaikin MK, Otero R, Gallego JM, Miranda R, Torres T, and Ecija D
- Abstract
Expanded porphyrins are large-cavity macrocycles with enormous potential in coordination chemistry, anion sensing, photodynamic therapy, and optoelectronics. In the last two decades, the surface science community has assessed the physicochemical properties of tetrapyrrolic-like macrocycles. However, to date, the sublimation, self-assembly and atomistic insights of expanded porphyrins on surfaces have remained elusive. Here, we show the self-assembly on Au(111) of an expanded aza-porphyrin, namely, an "expanded hemiporphyrazine", through a unique growth mechanism based on long-range orientational self-assembly. Furthermore, a spatially controlled "writing" protocol on such self-assembled architecture is presented based on the STM tip-induced deprotonation of the inner protons of individual macrocycles. Finally, the capability of these surface-confined macrocycles to host lanthanide elements is assessed, introducing a novel off-centered coordination motif. The presented findings represent a milestone in the fields of porphyrinoid chemistry and surface science, revealing a great potential for novel surface patterning, opening new avenues for molecular level information storage, and boosting the emerging field of surface-confined coordination chemistry involving f-block elements.
- Published
- 2017
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226. Collective concerted motion in a molecular adlayer visualized through the surface diffusion of isolated vacancies.
- Author
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Urban C, Otero R, Écija D, Trelka M, Martín N, Gallego JM, and Miranda R
- Subjects
- Diffusion, Dimerization, Membrane Glycoproteins, Motion, Surface Properties, Heterocyclic Compounds chemistry, Models, Molecular
- Abstract
We have measured STM movies to study the diffusion of individual vacancies in a self-assembled layer of a tetrathiafulvalene derivative (exTTF) on Au(111) at room temperature. The diffusion is anisotropic, being faster along the compact direction of the molecular lattice. A detailed analysis of the anisotropic displacement distribution of the single vacancies shows that the relative abundance of double jumps (that is, the collective motion of molecular dimers) with respect to single jumps is rather large, the number of double jumps being more than 20% of the diffusion events. We conjecture that the relative abundances of long jumps might be related to the strength of the intermolecular bonding and the misfit of the molecular overlayer with the substrate lattice.
- Published
- 2016
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227. Thermal selectivity of intermolecular versus intramolecular reactions on surfaces.
- Author
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Cirera B, Giménez-Agulló N, Björk J, Martínez-Peña F, Martin-Jimenez A, Rodriguez-Fernandez J, Pizarro AM, Otero R, Gallego JM, Ballester P, Galan-Mascaros JR, and Ecija D
- Subjects
- Cycloaddition Reaction, Isoindoles, Microscopy, Scanning Tunneling, Quantum Theory, Surface Properties, Temperature, Electronics, Gold chemistry, Indoles chemistry, Nanotechnology methods, Porphyrins chemistry
- Abstract
On-surface synthesis is a promising strategy for engineering heteroatomic covalent nanoarchitectures with prospects in electronics, optoelectronics and photovoltaics. Here we report the thermal tunability of reaction pathways of a molecular precursor in order to select intramolecular versus intermolecular reactions, yielding monomeric or polymeric phthalocyanine derivatives, respectively. Deposition of tetra-aza-porphyrin species bearing ethyl termini on Au(111) held at room temperature results in a close-packed assembly. Upon annealing from room temperature to 275 °C, the molecular precursors undergo a series of covalent reactions via their ethyl termini, giving rise to phthalocyanine tapes. However, deposition of the tetra-aza-porphyrin derivatives on Au(111) held at 300 °C results in the formation and self-assembly of monomeric phthalocyanines. A systematic scanning tunnelling microscopy study of reaction intermediates, combined with density functional calculations, suggests a [2+2] cycloaddition as responsible for the initial linkage between molecular precursors, whereas the monomeric reaction is rationalized as an electrocyclic ring closure.
- Published
- 2016
- Full Text
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228. Temperature-controlled metal/ligand stoichiometric ratio in Ag-TCNE coordination networks.
- Author
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Rodríguez-Fernández J, Lauwaet K, Herranz MÁ, Martín N, Gallego JM, Miranda R, and Otero R
- Abstract
The deposition of tetracyanoethylene (TCNE) on Ag(111), both at Room Temperature (RT, 300 K) and low temperatures (150 K), leads to the formation of coordination networks involving silver adatoms, as revealed by Variable-Temperature Scanning Tunneling Microscopy. Our results indicate that TCNE molecules etch away material from the step edges and possibly also from the terraces, which facilitates the formation of the observed coordination networks. Moreover, such process is temperature dependent, which allows for different stoichiometric ratios between Ag and TCNE just by adjusting the deposition temperature. X-ray Photoelectron Spectroscopy and Density Functional Theory calculations reveal that charge-transfer from the surface to the molecule and the concomitant geometrical distortions at both sides of the organic/inorganic interface might facilitate the extraction of silver atoms from the step-edges and, thus, its incorporation into the observed TCNE coordination networks.
- Published
- 2015
- Full Text
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229. Ordering fullerenes at the nanometer scale on solid surfaces.
- Author
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Sánchez L, Otero R, Gallego JM, Miranda R, and Martín N
- Published
- 2009
- Full Text
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230. Adenine monolayers on the Au(111) surface: structure identification by scanning tunneling microscopy experiment and ab initio calculations.
- Author
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Lukas M, Kelly RE, Kantorovich LN, Otero R, Xu W, Laegsgaard E, Stensgaard I, and Besenbacher F
- Subjects
- Algorithms, Microscopy, Scanning Tunneling, Models, Molecular, Surface Properties, Temperature, Adenine chemistry, Gold chemistry, Quantum Theory
- Abstract
From an interplay between scanning tunneling microscopy (STM) and ab initio density functional theory (DFT) we have identified and characterized two different self-assembled adenine (A) structures formed on the Au(111) surface. The STM observations reveal that both structures have a hexagonal geometry in which each molecule forms double hydrogen bonds with three nearest neighbors. One of the A structures, with four molecules in the primitive cell, has p2gg space group symmetry, while the other one, with two molecules in the cell, has p2 symmetry. The first structure is observed more frequently and is found to be the dominating structure after annealing. Experimental as well as theoretical findings indicate that the interaction of A molecules with the gold surface is rather weak and smooth across the surface. This enabled us to unequivocally characterize the observed structures, systematically predict all structural possibilities, based on all known A-A dimers, and provisionally optimize positions of the A molecules in the cell prior to full-scale DFT calculations. The theoretical method is a considerable improvement compared to the approach suggested previously by Kelly and Kantorovich [Surf. Sci. 589, 139 (2005)]. We propose that the less ordered p2gg symmetry structure is observed more frequently due to kinetic effects during island formation upon deposition at room temperature.
- Published
- 2009
- Full Text
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231. Understanding the disorder of the DNA base cytosine on the Au(111) surface.
- Author
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Kelly RE, Lukas M, Kantorovich LN, Otero R, Xu W, Mura M, Laegsgaard E, Stensgaard I, and Besenbacher F
- Subjects
- Dimerization, Kinetics, Nanotechnology, Quantum Theory, Surface Properties, Cytosine chemistry, DNA chemistry, Gold chemistry
- Abstract
Using ultrahigh vacuum scanning tunneling microscopy (STM) and ab initio density functional theory, we have investigated in detail structures formed by cytosine on the Au(111) surface in clean ultrahigh vacuum conditions. In spite of the fact that the ground state of this DNA base on the surface is shown to be an ordered arrangement of cytosine one-dimensional branches (filaments), this structure has never been observed in our STM experiments. Instead, disordered structures are observed, which can be explained by only a few elementary structural motifs: filaments, five- and sixfold rings, which randomly interconnect with each other forming bent chains, T junctions, and nanocages. The latter may have trapped smaller structures inside. The formation of such an unusual assembly is explained by simple kinetic arguments as a liquid-glass transition.
- Published
- 2008
- Full Text
- View/download PDF
232. Elementary structural motifs in a random network of cytosine adsorbed on a gold(111) surface.
- Author
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Otero R, Lukas M, Kelly RE, Xu W, Laegsgaard E, Stensgaard I, Kantorovich LN, and Besenbacher F
- Abstract
Nonsymmetrical organic molecules adsorbed on solid surfaces may assemble into random networks, thereby providing model systems for organic glasses that can be directly observed by scanning tunneling microscopy (STM). We investigated the structure of a disordered cytosine network on a gold(111) surface created by thermal quenching, to temperatures below 150 K, of the two-dimensional fluid present on the surface at room temperature. Comparison of STM images to density functional theory calculations allowed us to identify three elementary structural motifs (zigzag filaments and five- and six-membered rings) that underlie the whole supramolecular random network. The identification of elementary structural motifs may provide a new framework for understanding medium-range order in amorphous and glassy systems.
- Published
- 2008
- Full Text
- View/download PDF
233. Specificity of watson-crick base pairing on a solid surface studied at the atomic scale.
- Author
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Otero R, Xu W, Lukas M, Kelly RE, Laegsgaard E, Stensgaard I, Kjems J, Kantorovich LN, and Besenbacher F
- Subjects
- Gold chemistry, Surface Properties, Base Pairing, DNA chemistry, Nucleotides chemistry
- Published
- 2008
- Full Text
- View/download PDF
234. Chiral close-packing of achiral star-shaped molecules on solid surfaces.
- Author
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Schöck M, Otero R, Stojkovic S, Hümmelink F, Gourdon A, Laegsgaard E, Stensgaard I, Joachim C, and Besenbacher F
- Subjects
- Surface Properties, Stereoisomerism
- Abstract
From the interplay of scanning tunneling microscopy and theoretical calculations, we study the chiral self-assembly of achiral HtB-HBC molecules upon adsorption on the Cu(110) surface. We find that chirality is expressed at two different levels: a +/-5 degrees rotation of the molecular axis with respect to the close-packed direction of the Cu(110) substrate and a chiral close-packed arrangement expected for star-shaped molecules in 2D. Out of the four possible chiral expressions, only two are found to exist due the effect of van der Waals (vdW) interactions forcing the molecules to simultaneously adjust to the atomic template of the substrate geometry and self-assemble in a close-packed geometry.
- Published
- 2006
- Full Text
- View/download PDF
235. Coadsorption of guanine and cytosine on graphite: ordered structure based on GC pairing.
- Author
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Xu S, Dong M, Rauls E, Otero R, Linderoth TR, and Besenbacher F
- Subjects
- Adsorption, DNA chemistry, Microscopy, Scanning Tunneling, Nanostructures, Base Pairing, Cytosine chemistry, Graphite chemistry, Guanine chemistry
- Abstract
Nanostructures formed by coadsorption of the complementary DNA bases guanine (G) and cytosine (C) at a graphite surface in 1-octanol solvent were investigated by in situ scanning tunneling microscopy. The high-resolution observations showed for the first time a well-ordered coadsorption structure, attributed to rows formed from Watson-Crick G-C pairs, which was distinctly different from the structures observed for the individual G/C components. The observed coadsorption structure has been modeled by self-consistent charge density-functional-based tight-binding (SCC-DFTB) calculations, providing information on the intermolecular interactions underlying its formation.
- Published
- 2006
- Full Text
- View/download PDF
236. Scanning tunneling microscopy manipulation of complex organic molecules on solid surfaces.
- Author
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Otero R, Rosei F, and Besenbacher F
- Abstract
Organic molecules adsorbed on solid surfaces display a fascinating variety of new physical and chemical phenomena ranging from self-assembly and molecular recognition to nonlinear optical properties and current rectification. Both the fundamental interest in these systems and the promise of technological applications have motivated a strong research effort in understanding and controlling these properties. Scanning tunneling microscopy (STM) and, in particular, its ability to manipulate individual adsorbed molecules, has become a powerful tool for studying the adsorption geometry and the conformation and dynamics of single molecules and molecular aggregates. Here we review selected case studies demonstrating the enormous capabilities of STM manipulations to explore basic physiochemical properties of adsorbed molecules. In particular, we emphasize the role of STM manipulations in studying the coupling between the multiple degrees of freedom of adsorbed molecules, the phenomenon of molecular molding, and the possibility of creating and breaking individual chemical bonds in a controlled manner, i.e., the concept of single-molecule chemistry.
- Published
- 2006
- Full Text
- View/download PDF
237. One-dimensional assembly and selective orientation of Lander molecules on an O-Cu template.
- Author
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Otero R, Naitoh Y, Rosei F, Jiang P, Thostrup P, Gourdon A, Laegsgaard E, Stensgaard I, Joachim C, and Besenbacher F
- Published
- 2004
- Full Text
- View/download PDF
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