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There is a growing recognition of the important role of scale-dependent feedback for biogeomorphological landscape formation, where organisms locally improve survival and growth but at the same time negatively affect organisms at larger distance. However, little is known on how scale-dependent bio-geomorphic feedback is influenced by organism traits in combination with abiotic forcing. This was studied by measuring in a flume, the flow patterns around patches of three contrasting marsh species (Spartina anglica, Puccinellia maritima and Salicornia procumbens), using the flow acceleration around vegetation patches and deceleration within vegetation patches as quantitative proxy for the negative and positive feedback to the vegetation performance. The importance of external forcing was assessed by comparing three realistic current velocities: 0.1, 02 and 0.3 m s(-1). Our results showed that the dense clonal growth of stiff Spartina anglica shoots caused strongest flow deviations, irrespective of the applied current velocity. In contrast, the more sparsely growing, shorter stiff shoots of Salicornia procumbens induced much less flow deviation, allowing more water to pass through and over the vegetation canopy. The dense but highly flexible shoots of Puccinellia maritima caused strong flow deviations at low velocities, which diminished at higher velocities due to bending of the vegetation. Overall, these hydrodynamic results demonstrate that plant species traits interact with environmental conditions in creating scale-dependent feedbacks explaining why the effects of vegetation on landscape formation in saltmarshes are species specific.

Many scenarios have been defined in relation to the restoration of estuarine dynamics for the various basins (e.g. Volkerak-Zoommeer, Grevelingenmeer, Haringvliet). However, large scale changes that will be induced in combination with sea level rise might be difficult to foresee. Therefore, a 1D modelling effort was conducted. In this study the effects of climate change and future infrastructural adaptation on the hydrodynamics and water quality of the South West Netherlands are modelled using a 1D approach with the modelling software SOBEK.

[1] Feedback between vegetation growth, water flow, and landform is important for the biogeomorphic evolution of many landscapes, such as tidal marshes, alluvial rivers, and hillslopes. While experimental studies often focus on flow reduction within static homogeneous vegetation, we concentrate on flow acceleration around and between dynamically growing vegetation patches that colonize an initially bare landscape, with specific application to Spartina anglica, a pioneer of intertidal flats. Spartina patches were placed in a large-scale flow facility of 16 × 26 m, simulating the growth of two vegetation patches by increasing the patch diameter (D = 1–3 m) and decreasing the interpatch distance (d = 2.3–0 m). We quantified that the amount of flow acceleration next to vegetation patches, and the distance from the patch where maximum flow acceleration occurs, increases with increasing patch size. In between the patches, the accelerated flow pattern started to interact as soon as D/d ≥ 0.43–0.67. As the patches grew further, the flow acceleration increased until D/d ≥ 6.67–10, from which the flow acceleration between the patches was suppressed, and the two patches started to act as one. These findings are in accordance with theory on flow around and between nonpermeable structures; however, the threshold D/d values found here for permeable vegetation patches are higher than those for nonpermeable structures. The reported flow interactions with dynamic vegetation patches will be essential to further understanding of the larger-scale biogeomorphic evolution of landscapes formed by flowing water, such as tidal flats, floodplain rivers, and hillslopes., [1] Feedback between vegetation growth, water flow, and landform is important for the biogeomorphic evolution of many landscapes, such as tidal marshes, alluvial rivers, and hillslopes. While experimental studies often focus on flow reduction within static homogeneous vegetation, we concentrate on flow acceleration around and between dynamically growing vegetation patches that colonize an initially bare landscape, with specific application to Spartina anglica, a pioneer of intertidal flats. Spartina patches were placed in a large-scale flow facility of 16 × 26 m, simulating the growth of two vegetation patches by increasing the patch diameter (D = 1–3 m) and decreasing the interpatch distance (d = 2.3–0 m). We quantified that the amount of flow acceleration next to vegetation patches, and the distance from the patch where maximum flow acceleration occurs, increases with increasing patch size. In between the patches, the accelerated flow pattern started to interact as soon as D/d ≥ 0.43–0.67. As the patches grew further, the flow acceleration increased until D/d ≥ 6.67–10, from which the flow acceleration between the patches was suppressed, and the two patches started to act as one. These findings are in accordance with theory on flow around and between nonpermeable structures; however, the threshold D/d values found here for permeable vegetation patches are higher than those for nonpermeable structures. The reported flow interactions with dynamic vegetation patches will be essential to further understanding of the larger-scale biogeomorphic evolution of landscapes formed by flowing water, such as tidal flats, floodplain rivers, and hillslopes.

Contains fulltext : 81811.pdf (publisher's version ) (Closed access), In mouse zygotes, many post-translational histone modifications are asymmetrically present in male and female pronuclei. We investigated whether this principle could be used to determine the genetic composition of monopronuclear human zygotes in conventional IVF and ICSI. First we determined whether male female asymmetry is conserved from mouse to human by staining polypronuclear zygotes with antibodies against a subset of histone N-tail post-translational modifications. To analyze human monopronuclear zygotes, a modification, H3K9me3, was selected that is present in the maternal chromatin. After IVF a total of 45 monopronuclear zygotes were obtained. In 39 (87%) of zygotes a nonuniform staining pattern was observed, proof of a bi-parental origin and assumed to result into a diploid conception. Two zygotes showed no staining for the modification, indicating that the single pronucleus was of paternal origin. Four zygotes contained only maternally derived chromatin. ICSI-derived monopronuclear zygotes (n = 33) could also be divided into three groups based on the staining pattern of their chromatin: (1) of maternal origin (n = 15), (2) of paternal origin (n = 8) or (3) consisting of two chromatin domains as dominating in IVF (n = 10). Our data show that monopronuclear zygotes originating from IVF generally arise through fusion of parental chromatin after sperm penetration. Monopronuclear zygotes derived from ICSI in most cases contain uni-parental chromatin. The fact that chromatin was of paternal origin in 24% of ICSI and in 4% of the IVF zygotes confirms earlier results obtained by FISH on cleavage stages. Our findings are of clinical importance in IVF and ICSI practice.

Contains fulltext : 70968.pdf ( ) (Open Access), BACKGROUND: about 15% to 30% of the DNA in human sperm is packed in nucleosomes and transmission of this fraction to the embryo potentially serves as a mechanism to facilitate paternal epigenetic programs during embryonic development. However, hitherto it has not been established whether these nucleosomes are removed like the protamines or indeed contribute to paternal zygotic chromatin, thereby potentially contributing to the epigenome of the embryo. RESULTS: to clarify the fate of sperm-derived nucleosomes we have used the deposition characteristics of histone H3 variants from which follows that H3 replication variants present in zygotic paternal chromatin prior to S-phase originate from sperm. We have performed heterologous ICSI by injecting human sperm into mouse oocytes. Probing these zygotes with an antibody highly specific for the H3.1/H3.2 replication variants showed a clear signal in the decondensed human sperm chromatin prior to S-phase. In addition, staining of human multipronuclear zygotes also showed the H3.1/H3.2 replication variants in paternal chromatin prior to DNA replication. CONCLUSION: these findings reveal that sperm-derived nucleosomal chromatin contributes to paternal zygotic chromatin, potentially serving as a template for replication, when epigenetic information can be copied. Hence, the execution of epigenetic programs originating from transmitted paternal chromatin during subsequent embryonic development is a logical consequence of this observation.

Background. about 15% to 30% of the DNA in human sperm is packed in nucleosomes and transmission of this fraction to the embryo potentially serves as a mechanism to facilitate paternal epigenetic programs during embryonic development. However, hitherto it has not been established whether these nucleosomes are removed like the protamines or indeed contribute to paternal zygotic chromatin, thereby potentially contributing to the epigenome of the embryo. Results. to clarify the fate of sperm-derived nucleosomes we have used the deposition characteristics of histone H3 variants from which follows that H3 replication variants present in zygotic paternal chromatin prior to S-phase originate from sperm. We have performed heterologous ICSI by injecting human sperm into mouse oocytes. Probing these zygotes with an antibody highly specific for the H3.1/H3.2 replication variants showed a clear signal in the decondensed human sperm chromatin prior to S-phase. In addition, staining of human multipronuclear zygotes also showed the H3.1/H3.2 replication variants in paternal chromatin prior to DNA replication. Conclusion. these findings reveal that sperm-derived nucleosomal chromatin contributes to paternal zygotic chromatin, potentially serving as a template for replication, when epigenetic information can be copied. Hence, the execution of epigenetic programs originating from transmitted paternal chromatin during subsequent embryonic development is a logical consequence of this observation.

BACKGROUND: Ovarian stimulation gives rise to supraphysiological estradiol levels, which may affect oocyte quality. This study aims to investigate whether ovarian stimulation deranges the homocysteine pathway thereby affecting the pre-ovulatory follicle. METHODS: Blood samples were collected on cycle day 2 and the day of hCG administration in 181 women undergoing ovarian stimulation for IVF. In each subject, the diameter of the two leading follicles was measured and the corresponding follicular fluids were collected. In blood and follicular fluid samples, total homocysteine (tHcy), folate, cobalamin and pyridoxal'5-phosphate (PLP) were determined.

Background: about 15% to 30% of the DNA in human sperm is packed in nucleosomes and transmission of this fraction to the embryo potentially serves as a mechanism to facilitate paternal epigenetic programs during embryonic development. However, hitherto it has not been established whether these nucleosomes are removed like the protamines or indeed contribute to paternal zygotic chromatin, thereby potentially contributing to the epigenome of the embryo. Results: to clarify the fate of sperm-derived nucleosomes we have used the deposition characteristics of histone H3 variants from which follows that H3 replication variants present in zygotic paternal chromatin prior to S-phase originate from sperm. We have performed heterologous ICSI by injecting human sperm into mouse oocytes. Probing these zygotes with an antibody highly specific for the H3.1/H3.2 replication variants showed a clear signal in the decondensed human sperm chromatin prior to S-phase. In addition, staining of human multipronuclear zygotes also showed the H3.1/H3.2 replication variants in paternal chromatin prior to DNA replication. Conclusion: these findings reveal that sperm-derived nucleosomal chromatin contributes to paternal zygotic chromatin, potentially serving as a template for replication, when epigenetic information can be copied. Hence, the execution of epigenetic programs originating from transmitted paternal chromatin during subsequent embryonic development is a logical consequence of this observation.