8,168 results on '"J., Harvey"'
Search Results
302. Choice of Inversion Time for Arterial Spin Labeling MRI in the U.S. POINTER Lifestyle Intervention Trial
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Youngkyoo Jung, Sarah Y. Hong, Donghoon Kim, Prashanthi Vemuri, Bret J. Borowski, Clifford R. Jack, Robert A. Koeppe, Samuel N. Lockhart, Theresa M. Harrison, Leslie Gordineer, Nancy Woolard, Mark A. Espeland, Danielle J. Harvey, Laura Lovato, Arthur W. Toga, Joseph C. Masdeu, Hwamee Oh, Darren R. Gitelman, Neelum T. Aggarwal, Maria C. Carrillo, Heather M. Snyder, Rachel A. Whitmer, Laura D. Baker, Charles S. DeCarli, and Susan M. Landau
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2022
303. The Relationship between Vascular Risk Factors and White Matter Structural and Vascular Imaging Metrics
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Donghoon Kim, Tim M. Hughes, Jeongchul Kim, Danielle J. Harvey, Samuel N. Lockhart, Suzanne Craft, Laura D. Baker, Christopher T. Whitlow, Stephanie E. Okonmah‐Obazee, Christina E Hugenschmidt, Matthew Bobinski, and Youngkyoo Jung
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2022
304. Altered HDL Cholesterol Efflux Capacity and LCAT Activity is APOE‐Specific in Alzheimer Disease and Mild Cognitive Impairment Patients
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Brian V. Hong, Joanne Agus, Jack Jingyuan Zheng, Carlito B. Lebrilla, Lee‐Way Jin, Izumi Maezawa, Danielle J. Harvey, and Angela M. Zivkovic
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2022
305. Effects of Elevated Temperature and CO2 Concentration on Seedling Growth of Ventenata dubia (Leers) Coss. and Bromus tectorum L.
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Audrey J. Harvey, Lisa J. Rew, Tim S. Prather, and Jane M. Mangold
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annual grass ,cheatgrass ,climate change ,downy brome ,growth chamber ,seedling competition ,Agriculture - Abstract
The impacts of climate change are expected to alter the abundance and distribution of invasive annual grasses, such as Bromus tectorum L. (cheatgrass) and Ventenata dubia (Leers) Coss. (ventenata). High temperature extremes will be more frequent and for longer periods, and increased atmospheric CO2 is expected to double even with the most conservative estimates. Climate change draws concern for the potential success of winter annual grasses in arid and semi-arid plant communities. Information on B. tectorum’s growth response to climate change in laboratory and field experiments are available for monocultures; however, more knowledge is needed on the response when growing with other invasive grasses, such as V. dubia. We examined differences in seedling growth for V. dubia and B. tectorum growing alone and with each other under current (4 °C/23 °C at 400 ppm CO2) and elevated (10.6 °C/29.6 °C at 800 ppm CO2) climate conditions. There was one trial per climate scenario with 10 replications per competition type (inter-, intra-specific competition for each species). Bromus tectorum was larger than V. dubia across climate and competition treatments, but contrary to previous studies, both species were smaller in the elevated climate treatment. Ventenata dubia allocated more growth to its roots than B. tectorum across both climate treatments, indicating V. dubia may have a competitive advantage for soil resources now and in the future.
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- 2020
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306. Microelectrochemical Smart Needle for Real Time Minimally Invasive Oximetry
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Daniela Vieira, Francis McEachern, Romina Filippelli, Evan Dimentberg, Edward J Harvey, and Geraldine Merle
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oxygen biosensor ,spin dipping ,laccase ,acupuncture needles ,nanomaterials ,Biotechnology ,TP248.13-248.65 - Abstract
A variety of brain disorders such as neural injury, brain dysfunction, vascular malformation, and neurodegenerative diseases are associated with abnormal levels of oxygen. Current methods to directly monitor tissue oxygenation in the brain are expensive and invasive, suffering from a lack of accuracy. Electrochemical detection has been used as an invasiveness and cost-effectiveness method, minimizing pain, discomfort, and injury to the patient. In this work, we developed a minimally invasive needle-sensor with a high surface area to monitor O2 levels in the brain using acupuncture needles. The approach was to directly etch the iron from stainless steel acupuncture needles via a controlled pitting corrosion process, obtaining a high microporous surface area. In order to increase the conductivity and selectivity, we designed and applied for the first time a low-cost coating process using non-toxic chemicals to deposit high surface area carbon nanoparticle, catalytically active laccase, and biocompatible polypyrrole. The physicochemical properties of the materials were characterized as well as their efficacy and viability as probes for the electrochemical detection of PO2. Our modified needles exhibited efficient electrocatalysis and high selectivity toward O2, with excellent repeatability. We well engineered a small diagnostic tool to monitor PO2, minimally invasive, able to monitor real-time O2 in vivo complex environments.
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- 2020
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307. Cognitive Training Deep Dive: The Impact of Child, Training Behavior and Environmental Factors within a Controlled Trial of Cogmed for Fragile X Syndrome
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Haleigh Scott, Danielle J. Harvey, Yueju Li, Yingratana A. McLennan, Cindy K. Johnston, Ryan Shickman, Joseph Piven, Julie B. Schweitzer, and David Hessl
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FMRP ,FMR1 gene ,intellectual disability ,treatment ,working memory ,fragile X syndrome ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Children with fragile X syndrome (FXS) exhibit deficits in a variety of cognitive processes within the executive function domain. As working memory (WM) is known to support a wide range of cognitive, learning and adaptive functions, WM computer-based training programs have the potential to benefit people with FXS and other forms of intellectual and developmental disability (IDD). However, research on the effectiveness of WM training has been mixed. The current study is a follow-up “deep dive” into the data collected during a randomized controlled trial of Cogmed (Stockholm, Sweden) WM training in children with FXS. Analyses characterized the training data, identified training quality metrics, and identified subgroups of participants with similar training patterns. Child, parent, home environment and training quality metrics were explored in relation to the clinical outcomes during the WM training intervention. Baseline cognitive level and training behavior metrics were linked to gains in WM performance-based assessments and also to reductions in inattention and other behaviors related to executive functioning during the intervention. The results also support a recommendation that future cognitive intervention trials with individuals with IDD such as FXS include additional screening of participants to determine not only baseline feasibility, but also capacity for training progress over a short period prior to inclusion and randomization. This practice may also better identify individuals with IDD who are more likely to benefit from cognitive training in clinical and educational settings.
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- 2020
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308. The Impact of Ensemble Meteorology on Inverse Modeling Estimates of Volcano Emissions and Ash Dispersion Forecasts: Grímsvötn 2011
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Natalie J. Harvey, Helen F. Dacre, Helen N. Webster, Isabelle A. Taylor, Sujan Khanal, Roy G. Grainger, and Michael C. Cooke
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dispersion modeling ,volcanic ash ,inversion modeling ,meteorological ensemble ,wet deposition ,risk framework ,Meteorology. Climatology ,QC851-999 - Abstract
Volcanic ash can interact with the earth system on many temporal and spatial scales and is a significant hazard to aircraft. In the event of a volcanic eruption, fast and robust decisions need to be made by aviation authorities about which routes are safe to operate. Such decisions take into account forecasts of ash location issued by Volcanic Ash Advisory Centers (VAACs) which are informed by simulations from Volcanic Ash Transport and Dispersion (VATD) models. The estimation of the time-evolving vertical distribution of ash emissions for use in VATD simulations in real time is difficult which can lead to large uncertainty in these forecasts. This study presents a method for constraining the ash emission estimates by combining an inversion modeling technique with an ensemble of meteorological forecasts, resulting in an ensemble of ash emission estimates. These estimates of ash emissions can be used to produce a robust ash forecast consistent with observations. This new ensemble approach is applied to the 2011 eruption of the Icelandic volcano Grímsvötn. The resulting emission profiles each have a similar temporal evolution but there are differences in the magnitude of ash emitted at different heights. For this eruption, the impact of precipitation uncertainty (and the associated wet deposition of ash) on the estimate of the total amount of ash emitted is larger than the impact of the uncertainty in the wind fields. Despite the differences that are dominated by wet deposition uncertainty, the ensemble inversion provides confidence that the reduction of the unconstrained emissions (a priori), particularly above 4 km, is robust across all members. In this case, the use of posterior emission profiles greatly reduces the magnitude and extent of the forecast ash cloud. The ensemble of posterior emission profiles gives a range of ash column loadings much closer in agreement with a set of independent satellite retrievals in comparison to the a priori emissions. Furthermore, airspace containing volcanic ash concentrations deemed to be associated with the highest risk (likelihood of exceeding a high concentration threshold) to aviation are reduced by over 85%. Such improvements could have large implications in emergency response situations. Future research will focus on quantifying the impact of uncertainty in precipitation forecasts on wet deposition in other eruptions and developing an inversion system that makes use of the state-of-the-art meteorological ensembles which has the potential to be used in an operational setting.
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- 2020
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309. Histidine-Rich Defensins from the Solanaceae and Brasicaceae Are Antifungal and Metal Binding Proteins
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Mark R. Bleackley, Shaily Vasa, Peta J. Harvey, Thomas M. A. Shafee, Bomai K. Kerenga, Tatiana P. Soares da Costa, David J. Craik, Rohan G. T. Lowe, and Marilyn A. Anderson
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plant defensin ,antifungal ,metal binding ,histidine ,Biology (General) ,QH301-705.5 - Abstract
Plant defensins are best known for their antifungal activity and contribution to the plant immune system. The defining feature of plant defensins is their three-dimensional structure known as the cysteine stabilized alpha-beta motif. This protein fold is remarkably tolerant to sequence variation with only the eight cysteines that contribute to the stabilizing disulfide bonds absolutely conserved across the family. Mature defensins are typically 46–50 amino acids in length and are enriched in lysine and/or arginine residues. Examination of a database of approximately 1200 defensin sequences revealed a subset of defensin sequences that were extended in length and were enriched in histidine residues leading to their classification as histidine-rich defensins (HRDs). Using these initial HRD sequences as a query, a search of the available sequence databases identified over 750 HRDs in solanaceous plants and 20 in brassicas. Histidine residues are known to contribute to metal binding functions in proteins leading to the hypothesis that HRDs would have metal binding properties. A selection of the HRD sequences were recombinantly expressed and purified and their antifungal and metal binding activity was characterized. Of the four HRDs that were successfully expressed all displayed some level of metal binding and two of four had antifungal activity. Structural characterization of the other HRDs identified a novel pattern of disulfide linkages in one of the HRDs that is predicted to also occur in HRDs with similar cysteine spacing. Metal binding by HRDs represents a specialization of the plant defensin fold outside of antifungal activity.
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- 2020
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310. Abstract 143: Improvement Of Pulmonary Function After Removal Of Breast Implant And Total Capsulectomy: An Objective Outcome Assessment In Breast Implant Illness
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Corinne Wee, Joseph Younis, Kelsey Isbester, Arvin Smith, Katherine Grunzweig, Sam Boas, Donald J. Harvey, Anand Kumar, and Lu-Jean Feng
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Surgery ,RD1-811 - Published
- 2020
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311. Hierarchical probabilistic regression for AUV-based adaptive sampling of marine phenomena.
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Jnaneshwar Das, Julio B. J. Harvey, Frederic Py, Harshvardhan Vathsangam, Rishi Graham, Kanna Rajan, and Gaurav S. Sukhatme
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- 2013
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312. Alpha2-Containing Glycine Receptors Promote Neonatal Spontaneous Activity of Striatal Medium Spiny Neurons and Support Maturation of Glutamatergic Inputs
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Joris Comhair, Jens Devoght, Giovanni Morelli, Robert J. Harvey, Victor Briz, Sarah C. Borrie, Claudia Bagni, Jean-Michel Rigo, Serge N. Schiffmann, David Gall, Bert Brône, and Svetlana M. Molchanova
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autism spectrum disorders ,dorsal striatum ,medium spiny neurons ,glycine receptors ,spontaneous activity ,synaptic development ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Glycine receptors (GlyRs) containing the α2 subunit are highly expressed in the developing brain, where they regulate neuronal migration and maturation, promote spontaneous network activity and subsequent development of synaptic connections. Mutations in GLRA2 are associated with autism spectrum disorder, but the underlying pathophysiology is not described yet. Here, using Glra2-knockout mice, we found a GlyR-dependent effect on neonatal spontaneous activity of dorsal striatum medium spiny neurons (MSNs) and maturation of the incoming glutamatergic innervation. Our data demonstrate that functional GlyRs are highly expressed in MSNs of one-week-old mice, but they do not generate endogenous chloride-mediated tonic or phasic current. Despite of that, knocking out the Glra2 severely affects the shape of action potentials and impairs spontaneous activity and the frequency of miniature AMPA receptor-mediated currents in MSNs. This reduction in spontaneous activity and glutamatergic signaling can attribute to the observed changes in neonatal behavioral phenotypes as seen in ultrasonic vocalizations and righting reflex. In adult Glra2-knockout animals, the glutamatergic synapses in MSNs remain functionally underdeveloped. The number of glutamatergic synapses and release probability at presynaptic site remain unaffected, but the amount of postsynaptic AMPA receptors is decreased. This deficit is a consequence of impaired development of the neuronal circuitry since acute inhibition of GlyRs by strychnine in adult MSNs does not affect the properties of glutamatergic synapses. Altogether, these results demonstrate that GlyR-mediated signaling supports neonatal spontaneous MSN activity and, in consequence, promotes the functional maturation of glutamatergic synapses on MSNs. The described mechanism might shed light on the pathophysiological mechanisms in GLRA2-linked autism spectrum disorder cases.
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- 2018
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313. Functional Consequences of the Postnatal Switch From Neonatal to Mutant Adult Glycine Receptor α1 Subunits in the Shaky Mouse Model of Startle Disease
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Natascha Schaefer, Fang Zheng, Johannes van Brederode, Alexandra Berger, Sophie Leacock, Hiromi Hirata, Christopher J. Paige, Robert J. Harvey, Christian Alzheimer, and Carmen Villmann
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glycine receptor ,startle disease ,β8-β9 loop ,mouse model ,fast decay ,shaky ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Mutations in GlyR α1 or β subunit genes in humans and rodents lead to severe startle disease characterized by rigidity, massive stiffness and excessive startle responses upon unexpected tactile or acoustic stimuli. The recently characterized startle disease mouse mutant shaky carries a missense mutation (Q177K) in the β8-β9 loop within the large extracellular N-terminal domain of the GlyR α1 subunit. This results in a disrupted hydrogen bond network around K177 and faster GlyR decay times. Symptoms in mice start at postnatal day 14 and increase until premature death of homozygous shaky mice around 4–6 weeks after birth. Here we investigate the in vivo functional effects of the Q177K mutation using behavioral analysis coupled to protein biochemistry and functional assays. Western blot analysis revealed GlyR α1 subunit expression in wild-type and shaky animals around postnatal day 7, a week before symptoms in mutant mice become obvious. Before 2 weeks of age, homozygous shaky mice appeared healthy and showed no changes in body weight. However, analysis of gait and hind-limb clasping revealed that motor coordination was already impaired. Motor coordination and the activity pattern at P28 improved significantly upon diazepam treatment, a pharmacotherapy used in human startle disease. To investigate whether functional deficits in glycinergic neurotransmission are present prior to phenotypic onset, we performed whole-cell recordings from hypoglossal motoneurons (HMs) in brain stem slices from wild-type and shaky mice at different postnatal stages. Shaky homozygotes showed a decline in mIPSC amplitude and frequency at P9-P13, progressing to significant reductions in mIPSC amplitude and decay time at P18-24 compared to wild-type littermates. Extrasynaptic GlyRs recorded by bath-application of glycine also revealed reduced current amplitudes in shaky mice compared to wild-type neurons, suggesting that presynaptic GlyR function is also impaired. Thus, a distinct, but behaviorally ineffective impairment of glycinergic synapses precedes the symptoms onset in shaky mice. These findings extend our current knowledge on startle disease in the shaky mouse model in that they demonstrate how the progression of GlyR dysfunction causes, with a delay of about 1 week, the appearance of disease symptoms.
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- 2018
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314. Distinct Mechanisms of Pathogenic DJ-1 Mutations in Mitochondrial Quality Control
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Daniela Strobbe, Alexis A. Robinson, Kirsten Harvey, Lara Rossi, Caterina Ferraina, Valerio de Biase, Carlo Rodolfo, Robert J. Harvey, and Michelangelo Campanella
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mitochondria ,mitophagy ,DJ-1 ,DJBP/EFCAB6 ,PARK7 ,SUMO-1 ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The deglycase and chaperone protein DJ-1 is pivotal for cellular oxidative stress responses and mitochondrial quality control. Mutations in PARK7, encoding DJ-1, are associated with early-onset familial Parkinson’s disease and lead to pathological oxidative stress and/or disrupted protein degradation by the proteasome. The aim of this study was to gain insights into the pathogenic mechanisms of selected DJ-1 missense mutations, by characterizing protein–protein interactions, core parameters of mitochondrial function, quality control regulation via autophagy, and cellular death following dopamine accumulation. We report that the DJ-1M26I mutant influences DJ-1 interactions with SUMO-1, in turn enhancing removal of mitochondria and conferring increased cellular susceptibility to dopamine toxicity. By contrast, the DJ-1D149A mutant does not influence mitophagy, but instead impairs Ca2+ dynamics and free radical homeostasis by disrupting DJ-1 interactions with a mitochondrial accessory protein known as DJ-1-binding protein (DJBP/EFCAB6). Thus, individual DJ-1 mutations have different effects on mitochondrial function and quality control, implying mutation-specific pathomechanisms converging on impaired mitochondrial homeostasis.
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- 2018
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315. Structure/Function Studies of the α4 Subunit Reveal Evolutionary Loss of a GlyR Subtype Involved in Startle and Escape Responses
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Sophie Leacock, Parnayan Syed, Victoria M. James, Anna Bode, Koichi Kawakami, Angelo Keramidas, Maximiliano Suster, Joseph W. Lynch, and Robert J. Harvey
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α4 subunit ,glycine receptor ,GLRA4 ,hyperekplexia ,startle disease ,zebrafish ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Inhibitory glycine receptors (GlyRs) are pentameric ligand-gated anion channels with major roles in startle disease/hyperekplexia (GlyR α1), cortical neuronal migration/autism spectrum disorder (GlyR α2), and inflammatory pain sensitization/rhythmic breathing (GlyR α3). However, the role of the GlyR α4 subunit has remained enigmatic, because the corresponding human gene (GLRA4) is thought to be a pseudogene due to an in-frame stop codon at position 390 within the fourth membrane-spanning domain (M4). Despite this, a recent genetic study has implicated GLRA4 in intellectual disability, behavioral problems and craniofacial anomalies. Analyzing data from sequenced genomes, we found that GlyR α4 subunit genes are predicted to be intact and functional in the majority of vertebrate species—with the exception of humans. Cloning of human GlyR α4 cDNAs excluded alternative splicing and RNA editing as mechanisms for restoring a full-length GlyR α4 subunit. Moreover, artificial restoration of the missing conserved arginine (R390) in the human cDNA was not sufficient to restore GlyR α4 function. Further bioinformatic and mutagenesis analysis revealed an additional damaging substitution at K59 that ablates human GlyR α4 function, which is not present in other vertebrate GlyR α4 sequences. The substitutions K59 and X390 were also present in the genome of an ancient Denisovan individual, indicating that GLRA4 has been a pseudogene for at least 30,000–50,000 years. In artificial synapses, we found that both mouse and gorilla α4β GlyRs mediate synaptic currents with unusually slow decay kinetics. Lastly, to gain insights into the biological role of GlyR α4 function, we studied the duplicated genes glra4a and glra4b in zebrafish. While glra4b expression is restricted to the retina, using a novel tol2-GAL4FF gene trap line (SAIGFF16B), we found that the zebrafish GlyR α4a subunit gene (glra4a) is strongly expressed in spinal cord and hindbrain commissural neurones. Using gene knockdown and a dominant-negative GlyR α4aR278Q mutant, we found that GlyR α4a contributes to touch-evoked escape behaviors in zebrafish. Thus, although GlyR α4 is unlikely to be involved in human startle responses or disease states, this subtype may contribute to escape behaviors in other organisms.
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- 2018
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316. Genomic evidence for genes encoding leucine-rich repeat receptors linked to resistance against the eukaryotic extra- and intracellular Brassica napus pathogens Leptosphaeria maculans and Plasmodiophora brassicae.
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Henrik U Stotz, Pascoe J Harvey, Parham Haddadi, Alla Mashanova, Andreas Kukol, Nicholas J Larkan, M Hossein Borhan, and Bruce D L Fitt
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Medicine ,Science - Abstract
Genes coding for nucleotide-binding leucine-rich repeat (LRR) receptors (NLRs) control resistance against intracellular (cell-penetrating) pathogens. However, evidence for a role of genes coding for proteins with LRR domains in resistance against extracellular (apoplastic) fungal pathogens is limited. Here, the distribution of genes coding for proteins with eLRR domains but lacking kinase domains was determined for the Brassica napus genome. Predictions of signal peptide and transmembrane regions divided these genes into 184 coding for receptor-like proteins (RLPs) and 121 coding for secreted proteins (SPs). Together with previously annotated NLRs, a total of 720 LRR genes were found. Leptosphaeria maculans-induced expression during a compatible interaction with cultivar Topas differed between RLP, SP and NLR gene families; NLR genes were induced relatively late, during the necrotrophic phase of pathogen colonization. Seven RLP, one SP and two NLR genes were found in Rlm1 and Rlm3/Rlm4/Rlm7/Rlm9 loci for resistance against L. maculans on chromosome A07 of B. napus. One NLR gene at the Rlm9 locus was positively selected, as was the RLP gene on chromosome A10 with LepR3 and Rlm2 alleles conferring resistance against L. maculans races with corresponding effectors AvrLm1 and AvrLm2, respectively. Known loci for resistance against L. maculans (extracellular hemi-biotrophic fungus), Sclerotinia sclerotiorum (necrotrophic fungus) and Plasmodiophora brassicae (intracellular, obligate biotrophic protist) were examined for presence of RLPs, SPs and NLRs in these regions. Whereas loci for resistance against P. brassicae were enriched for NLRs, no such signature was observed for the other pathogens. These findings demonstrate involvement of (i) NLR genes in resistance against the intracellular pathogen P. brassicae and a putative NLR gene in Rlm9-mediated resistance against the extracellular pathogen L. maculans.
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- 2018
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317. Physiological oxygen culture reveals retention of metabolic memory in human induced pluripotent stem cells.
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Alexandra J Harvey, Carmel O'Brien, Jack Lambshead, John R Sheedy, Joy Rathjen, Andrew L Laslett, and David K Gardner
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Medicine ,Science - Abstract
Reprogramming somatic cells to a pluripotent cell state (induced Pluripotent Stem (iPS) cells) requires reprogramming of metabolism to support cell proliferation and pluripotency, most notably changes in carbohydrate turnover that reflect a shift from oxidative to glycolytic metabolism. Some aspects of iPS cell metabolism differ from embryonic stem (ES) cells, which may reflect a parental cell memory, or be a consequence of the reprogramming process. In this study, we compared the metabolism of 3 human iPS cell lines to assess the fidelity of metabolic reprogramming. When challenged with reduced oxygen concentration, ES cells have been shown to modulate carbohydrate use in a predictably way. In the same model, 2 of 3 iPS cell lines failed to regulate carbohydrate metabolism. Oxygen is a well-characterized regulator of cell function and embryo viability, and an inability of iPS cells to modulate metabolism in response to oxygen may indicate poor metabolic fidelity. As metabolism is linked to the regulation of the epigenome, assessment of metabolic responses of iPS cells to physiological stimuli during characterization is warranted to ensure complete cell reprogramming and as a measure of cell quality.
- Published
- 2018
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318. Tonically Active α2 Subunit-Containing Glycine Receptors Regulate the Excitability of Striatal Medium Spiny Neurons
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Svetlana M. Molchanova, Joris Comhair, Deniz Karadurmus, Elisabeth Piccart, Robert J. Harvey, Jean-Michel Rigo, Serge N. Schiffmann, Bert Brône, and David Gall
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dorsal striatum ,medium spiny neurons ,glycine receptors ,tonic current ,excitability ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Medium spiny neurons (MSNs) of the dorsal striatum represent the first relay of cortico–striato–thalamic loop, responsible for the initiation of voluntary movements and motor learning. GABAergic transmission exerts the main inhibitory control of MSNs. However, MSNs also express chloride-permeable glycine receptors (GlyRs) although their subunit composition and functional significance in the striatum is unknown. Here, we studied the function of GlyRs in MSNs of young adult mice. We show that MSNs express functional GlyRs, with α2 being the main agonist binding subunit. These receptors are extrasynaptic and depolarizing at resting state. The pharmacological inhibition of GlyRs, as well as inactivation of the GlyR α2 subunit gene hyperpolarize the membrane potential of MSNs and increase their action potential firing offset. Mice lacking GlyR α2 showed impaired motor memory consolidation without any changes in the initial motor performance. Taken together, these results demonstrate that tonically active GlyRs regulate the firing properties of MSNs and may thus affect the function of basal ganglia.
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- 2018
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319. Environmentally vulnerable noble chafers exhibit unusual pheromone-mediated behaviour.
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Deborah J Harvey, József Vuts, Antony Hooper, Paul Finch, Christine M Woodcock, John C Caulfield, Marcin Kadej, Adrian Smolis, David M Withall, Sarah Henshall, John A Pickett, Alan C Gange, and Michael A Birkett
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Medicine ,Science - Abstract
Conserving populations of environmentally vulnerable insect species requires a greater understanding of the factors that determine their abundance and distribution, which requires detailed knowledge of their population and community ecology. Chemical ecological tools such as pheromones can be used for non-destructive monitoring of scarab beetle populations, enabling European countries to detect and, in some cases, map the range of some of these species, proving a valuable technique for monitoring elusive saproxylic beetles. In this paper, we investigated the behavioural and chemical ecology of the noble chafer, Gnorimus nobilis L., a model insect species of conservation concern across a Europe-wide distribution, and a red-listed UK Biodiversity Action Plan priority species. We identified a potential pheromone of adult beetles using electrophysiological recordings, behavioural measurements and field trials in the UK. Gnorimus nobilis is highly unusual in that although both sexes produce, at high metabolic cost, the natural product 2-propyl (E)-3-hexenoate, it only attracts males. This pattern of chemical signalling makes the classification of the compound, based on current semiochemical terminology, somewhat problematic, but in our view, it should be termed an aggregation pheromone as a consequence of the production pattern. Since both sexes emit it, but apparently only males respond positively to it, 2-propyl (E)-3-hexenoate may reflect an intermediate evolutionary stage towards developing into a sex-specific signal. From an applied perspective, our study provides a model for the non-invasive surveillance of cryptic vulnerable insect species, without the need for habitat searching or disturbance, and continuous human monitoring.
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- 2018
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320. Correction: Maternal gestational weight gain and objectively measured physical activity among offspring.
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Niko S Wasenius, Kimberly P Grattan, Alysha L J Harvey, Nick Barrowman, Gary S Goldfield, and Kristi B Adamo
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Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0180249.].
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- 2018
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321. Correction to: Clinically relevant phenotypes in chronic rhinosinusitis
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Jessica W. Grayson, Marina Cavada, and Richard J. Harvey
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Surgery ,RD1-811 - Abstract
Following publication of the original article [1], the authors reported an error in Table 1. In the second columns of the ‘Radiology’ row, ‘Normal anterolateral sinus mucosa’ should read ‘Normal superolateral sinus mucosa’. A corrected version of Table 1 is included in this Correction.
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- 2019
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322. PO-01-179 MOVING BEYOND QRS DURATION: QRS VOLTAGE-TIME-INTEGRAL (AREA) IS A SUPERIOR PREDICTOR OF CLINICAL RESPONSE TO CARDIAC RESYNCHRONIZATION THERAPY
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Christian Toquica Gahona, Tucker Morey, Christopher J. Harvey, Ashley DeBauge, Tyan Fairbank, Sagar Ranka, Sania Jiwani, Seth H. Sheldon, Yeruva V. Reddy, and Amit Noheria
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Physiology (medical) ,Cardiology and Cardiovascular Medicine - Published
- 2023
323. IA et chirurgie : Terminator ou occasion en or?
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Edward J. Harvey and Chad G. Ball
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Surgery - Published
- 2023
324. AI and surgery — Skynet or a great opportunity?
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Edward J. Harvey and Chad G. Ball
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Surgery - Published
- 2023
325. Lettre à la rédaction - Réponse des auteurs aux lettres à la rédaction à propos du commentaire « Santé publique clinique : exploiter le meilleur des deux mondes pour la santé comme pour le traitement des maladies »
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Neeru Gupta, Bernard C. K. Choi, Arlene S. King, Kathryn Graham, Rose Bilotta, Peter Selby, Bart J. Harvey, Pierrette Buklis, and Donna L. Reynolds
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General Medicine - Abstract
Nous sommes heureux que notre article sur la santé publique clinique1 ait reçu l’appui du Dr Shah2, qui mentionne également des éléments historiques importants au sujet de la santé publique clinique. Le Dr Shah a été le premier directeur d’un nouveau programme de résidence lancé en 1976 à l’Université de Toronto, soit le programme de résidence en médecine communautaire, qui porte maintenant le nom de programme de résidence en santé publique et en médecine préventive. Même s’il prétend ne pas avoir « su rassembler les cliniciens et les professionnels de la santé publique pour définir les éléments communs et les synergies nécessaires »2, nous sommes d’avis qu’il n’a pas échoué, car ses efforts ont inspiré ses étudiants (dont plusieurs ont corédigé l’article en question1). Tirant parti de son héritage important, les générations suivantes de cliniciens et de professionnels en santé publique ont fait des avancées sur le plan d’une collaboration efficace entre médecine clinique et santé publique.
- Published
- 2023
326. Authors’ response to Letters to the Editor re: Clinical public health: harnessing the best of both worlds in sickness and in health
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Neeru Gupta, Bernard C. K. Choi, Arlene S. King, Kathryn Graham, Rose Bilotta, Peter Selby, Bart J. Harvey, Pierrette Buklis, and Donna L. Reynolds
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Epidemiology ,Health Policy ,Public Health, Environmental and Occupational Health - Abstract
We are pleased that our paper on clinical public health1 received support from Dr. Shah,2 who also provides important historical aspects of clinical public health. Dr. Shah was the inaugural director of a newly created residency program (Community Medicine, now known as Public Health and Preventive Medicine) at the University of Toronto in 1976. Although he claims to have failed to “bring clinicians and public health professionals together to define the common elements and synergy needed,”2 we believe he did not fail, because his efforts ignited sparks among his students (including several co-authors of this paper1). Building on his important legacy, subsequent generations of clinicians and public health professionals have made strides towards effective collaboration of clinical medicine and public health.
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- 2023
327. Adaptive image segmentation for robust measurement of longitudinal brain tissue change.
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Evan Fletcher, Baljeet Singh, Danielle J. Harvey, Owen T. Carmichael, and Charles DeCarli
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- 2012
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328. 7Be in the outburst of the ONe nova V6595 Sgr
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M. Della Valle, P. Selvelli, Piercarlo Bonifacio, E. Aydi, G. Cescutti, E. J. Harvey, Paolo Molaro, Valentina D'Odorico, Luca Izzo, Margarita Hernanz, Villum Fonden, Ministerio de Ciencia, Innovación y Universidades (España), Molaro, P., Izzo, L., D'Odorico, V., Aydi, E., Bonifacio, P., Cescutti, G., Harvey, E. J., Hernanz, M., Selvelli, P., Della Valle, M., ITA, USA, and ESP
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GIANT ,Astrophysics ,nuclear reaction ,Spectral line ,nucleosynthesis abundances ,Neon ,ABSORPTION ,ELEMENTS ,Abundances ,Emission spectrum ,Absorption (electromagnetic radiation) ,Novae ,Physics ,cataclysmic variables ,GAMMA-RAY LINES ,Isotope ,ORIGIN ,nucleosynthesis ,stars individual V6595 Sgr ,Astrophysics - Solar and Stellar Astrophysics ,Stars: individual: V6595 Sgr ,novae cataclysmic variable ,stars abundance ,Nucleosynthesis ,Cataclysmic variable ,V5668 SGR ,LI-7 ,chemistry.chemical_element ,evolution [Galaxy] ,Galaxy evolution ,LITHIUM ,stars abundances ,nucleosynthesis abundance ,nuclear reactions ,Galaxy: evolution ,novae ,abundances ,novae cataclysmic variables ,Stars: abundances ,Resonance ,Astronomy and Astrophysics ,Nova (laser) ,K-line ,EVOLUTION ,abundances [stars] ,individual: V6595 Sgr [stars] ,chemistry ,Space and Planetary Science ,EMISSION - Abstract
We report on the search for the 7Be ii isotope in the outbursts of the classical nova V6595 Sgr by means of high-resolution Ultraviolet and Visual Echelle Spectrograph (UVES) observations taken at the European Southern Observatory's Very Large Telescope in 2021 April, about two weeks after its discovery and under difficult circumstances due to the pandemic. Narrow absorption components with velocities at -2620 and-2820 km s-1, superposed on broader and shallow absorption, are observed in the outburst spectra for the 7Be ii λλ313.0583, 313.1228 nm doublet resonance lines, as well as in several other elements such as Ca ii, Fe i, Mg i, Na i, H i and Li i. Using the Ca ii K line as a reference element, we infer N(7Be)/N(H) ≈ 7.4 × 10-6, or ≈ 9.8 × 10-6 when the 7Be decay is taken into account. The 7Be abundance is about half of the value most frequently measured in novae. The possible presence of overionization in the layers where 7Be ii is detected is also discussed. Observations taken at the Telescopio Nazionale Galileo in La Palma 91 days after discovery showed prominent emission lines of oxygen and neon, which allow us to classify the nova as ONe type. Therefore, although 7Be is expected to be higher in CO novae, it is found at comparable levels in both nova types., LI was supported by two grants from VILLUM FONDEN (project number 16599 and 25501). M. H. acknowledges support from grant PID2019-108709GB-100 from MICINN (Spain).
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- 2021
329. Predictive value of ATN biomarker profiles in estimating disease progression in Alzheimer's disease dementia
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Danielle J Harvey, Richard B. Lipton, Ali Ezzati, Ahmed Abdulkadir, Christos Davatzikos, Paul M. Thompson, Lasya P. Sreepada, Monica Truelove-Hill, and Clifford R. Jack
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Male ,Oncology ,medicine.medical_specialty ,Amyloid ,Epidemiology ,tau Proteins ,Disease ,Article ,Machine Learning ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Alzheimer Disease ,Internal medicine ,Humans ,Medicine ,Dementia ,Cognitive Dysfunction ,Aged ,Amyloid beta-Peptides ,business.industry ,Data Collection ,Health Policy ,Neurodegeneration ,Disease progression ,Predictive analytics ,medicine.disease ,Predictive value ,Psychiatry and Mental health ,Disease Progression ,Biomarker (medicine) ,Female ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,Biomarkers - Abstract
We aimed to evaluate the value of ATN biomarker classification system (amyloid beta [A], pathologic tau [T], and neurodegeneration [N]) for predicting conversion from mild cognitive impairment (MCI) to dementia. In a sample of people with MCI (n = 415) we assessed predictive performance of ATN classification using empirical knowledge-based cut-offs for each component of ATN and compared it to two data-driven approaches, logistic regression and RUSBoost machine learning classifiers, which used continuous clinical or biomarker scores. In data-driven approaches, we identified ATN features that distinguish normals from individuals with dementia and used them to classify persons with MCI into dementia-like and normal groups. Both data-driven classification methods performed better than the empirical cut-offs for ATN biomarkers in predicting conversion to dementia. Classifiers that used clinical features performed as well as classifiers that used ATN biomarkers for prediction of progression to dementia. We discuss that data-driven modeling approaches can improve our ability to predict disease progression and might have implications in future clinical trials.
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- 2021
330. Life-Saving Cancer Care
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J. Harvey Turner
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Cancer Research ,Cancer Survivors ,Nursing ,Neoplasms ,Survivorship curve ,Cancer screening ,medicine ,Humans ,Life Tables ,Radiology, Nuclear Medicine and imaging ,Life saving ,Meaning (existential) ,Precision Medicine ,health care economics and organizations ,Pharmaceutical industry ,Pharmacology ,Government ,business.industry ,Cancer ,General Medicine ,medicine.disease ,Patient Care Management ,Oncology ,Pharmacogenetics ,Quality of Life ,Business ,Radiopharmaceuticals - Abstract
What, precisely, are we seeking to achieve in offering 'life-saving' treatment to patients with cancer? Research funding agencies and pharmaceutical industry media releases, and government cancer screening programs all promise that their cancer programs save lives. But everybody dies. The nature of life and death from cancer is explored philosophically in this essay, with particular reference to the quality of life, and its meaning, during the period of prolongation of survival by 'life-saving' cancer care.
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- 2021
331. Budget Impact Analysis of Comprehensive Genomic Profiling in Patients With Advanced Non–Small-Cell Lung Cancer
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Rachel Cunningham, Michael J. Harvey, Meagan Montesion, Ali McBride, Bethany Sawchyn, Anita Chawla, and Prasanth Reddy
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Budgets ,Male ,Oncology ,Cancer Research ,medicine.medical_specialty ,Lung Neoplasms ,Genomic profiling ,Carcinoma, Non-Small-Cell Lung ,Internal medicine ,medicine ,Humans ,In patient ,Lung cancer ,Aged ,Neoplasm Staging ,Lung ,business.industry ,Gene Expression Profiling ,Budget impact ,Middle Aged ,medicine.disease ,medicine.anatomical_structure ,Molecular Diagnostic Techniques ,Female ,sense organs ,Non small cell ,business - Abstract
PURPOSE This study assessed the economic impact of increased use of comprehensive genomic profiling (CGP) versus conventional testing strategies among patients with advanced non–small-cell lung cancer (aNSCLC) from a US commercial health plan perspective. METHODS A decision analytic model was developed to estimate the incremental benefits and costs across testing methodologies (CGP v non-CGP), as well as across sample types (tissue-based and liquid-based), for patients with newly diagnosed aNSCLC. Model outcomes included total direct costs, testing costs, and per member per month budget impact. Secondary model outcomes included the number of patients needed to test with CGP to add 1 life-year, and the number of patients needed to test with CGP to treat one individual with a biomarker-matched therapy. RESULTS In a hypothetical 2,000,000-member health plan, 790 members were estimated to have incident aNSCLC; 609 underwent molecular diagnostic testing with 122 (20%) tested with CGP (109 tissue-based and 13 liquid) in the base-case. An increase in CGP from 20% to 30% (an additional 61 patients tested with CGP) was associated with 3.11 additional life-years gained and a $0.01 in US dollars per member per month budget impact. Approximately 19.6 patients would need to be tested with CGP versus non-CGP to add one life-year and 5.9 patients would need to be tested with CGP to treat at least one patient with a biomarker-matched therapy. CONCLUSION An increase in CGP from 20% to 30% among patients with aNSCLC undergoing molecular diagnostic testing was associated with modest budget impact, most of which was attributable to prolonged survival associated with increased use of more effective treatments.
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- 2021
332. Limitations of clinical trial sample size estimate by subtraction of two measurements
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Yinghua Chen, Alzheimer’s Disease Neuroimaging Initiative, Yi Su, Eric M. Reiman, Chengjie Xiong, Rong Pan, Danielle J Harvey, Li Yao, Xiaojuan Guo, and Kewei Chen
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Statistics and Probability ,Aging ,Epidemiology ,Statistics & Probability ,Variable time ,Monte Carlo method ,Bioengineering ,Neuroimaging ,Neurodegenerative ,Alzheimer's Disease ,Article ,law.invention ,Mathematical equations ,two time point measurement ,Randomized controlled trial ,Alzheimer Disease ,law ,Statistics ,Acquired Cognitive Impairment ,Humans ,Mathematics ,Observational error ,sample size estimation ,Alzheimer's Disease Neuroimaging Initiative ,Neurosciences ,Subtraction ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,randomized clinical trial ,Magnetic Resonance Imaging ,Brain Disorders ,8.4 Research design and methodologies (health services) ,Clinical trial ,Research Design ,Sample size determination ,Sample Size ,Public Health and Health Services ,linear mixed effects model ,subtraction ,Biomedical Imaging ,Dementia ,Health and social care services research - Abstract
In planning randomized clinical trials (RCTs) for diseases such as Alzheimer's disease (AD), researchers frequently rely on the use of existing data obtained from only two time points to estimate sample size via the subtraction of baseline from follow-up measurements in each subject. However, the inadequacy of this method has not been reported. The aim of this study is to discuss the limitation of sample size estimation based on the subtraction of available data from only two time points for RCTs. Mathematical equations are derived to demonstrate the condition under which the obtained data pairs with variable time intervals could be used to adequately estimate sample size. The MRI-based hippocampal volume measurements from the Alzheimer's Disease Neuroimaging Initiative (ADNI) and Monte Carlo simulations (MCS) were used to illustrate the existing bias and variability of estimates. MCS results support the theoretically derived condition under which the subtraction approach may work. MCS also show the systematically under- or over-estimated sample sizes by up to 32.27 % bias. Not used properly, such subtraction approach outputs the same sample size regardless of trial durations partly due to the way measurement errors are handled. Estimating sample size by subtracting two measurements should be treated with caution. Such estimates can be biased, the magnitude of which depends on the planned RCT duration. To estimate sample sizes, we recommend using more than two measurements and more comprehensive approaches such as linear mixed effect models.
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- 2021
333. Application of renewable technology for mitigating environmental hazards of palm oil industry: Strategy for climate change and adaptation
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T. B. Onifade, A O Akanni, Shem O. Wandiga, and Patricia J. Harvey
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Pollution ,business.industry ,media_common.quotation_subject ,Climate change ,Environmental pollution ,General Medicine ,Total dissolved solids ,Pulp and paper industry ,Agriculture ,Dry season ,Environmental science ,Renewable technologies ,business ,Groundwater ,media_common - Abstract
Improper disposal and burning of agricultural residues are commonly practiced in some developing countries in which harmful gaseous products released into the atmosphere and some are depleted and reacted with the soil causing environmental pollution. Renewable technology can therefore be introduced for the utilization of the residues and ensure proper storage medium of the residues. An investigation was carried out on the pollution potential of oil palm residues on surface and underground water resources at the processing centre. Oil palm residues and water samples from the stream and well located near the oil processing site were used for the experiment. Water samples were collected during the raining and dry season to determine the level of pollution caused by the residues. Physical, chemical and bacteriological parameters of the water samples were determined. The chemical compounds of the palm residues were investigated. Results showed that aromatics compounds are mainly dominant of the palm fruit fiber which was characterized for bio-fuel production. It is revealed that effect of pollution on water bodies is significant at p
- Published
- 2021
334. Network approaches for formalizing conceptual models in ecosystem-based management
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Neda Trifonova, Christopher R. Kelble, Sean M. Lucey, Chris J. Harvey, Robert P. Wildermuth, Howard Townsend, P. Sean McDonald, and Jonathan C. P. Reum
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Ecology ,Management science ,Computer science ,Bayesian network ,Aquatic Science ,Oceanography ,Ecosystem-based management ,Ecology, Evolution, Behavior and Systematics ,Fuzzy cognitive map - Abstract
Qualitative Network Models (QNMs), Fuzzy Cognitive Maps (FCMs), and Bayesian Belief Networks (BBNs) have been proposed as methods to formalize conceptual models of social–ecological systems and project system responses to management interventions or environmental change. To explore how these different methods might influence conclusions about system dynamics, we assembled conceptual models representing three different coastal systems, adapted them to the network approaches, and evaluated outcomes under scenarios representing increased fishing effort and environmental warming. The sign of projected change was the same across the three network models for 31–60% of system variables on average. Pairwise agreement between network models was higher, ranging from 33 to 92%; average levels of similarity were comparable between network pairs. Agreement measures based on both the sign and strength of change were substantially worse for all model comparisons. These general patterns were similar across systems and scenarios. Different outcomes between models led to different inferences regarding trade-offs under the scenarios. We recommend deployment of all three methods, when feasible, to better characterize structural uncertainty and leverage insights gained under one framework to inform the others. Improvements in precision will require model refinement through data integration and model validation.
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- 2021
335. Testing the potential for larval dispersal to explain connectivity and population structure of threatened rockfish species in Puget Sound
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Mary Bhuthimethee, Parker MacCready, Bradley Bartos, Kelly S. Andrews, Dan Tonnes, and Chris J. Harvey
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geography ,Larva ,geography.geographical_feature_category ,Ecology ,Population structure ,Aquatic Science ,Biology ,Distinct population segment ,Rockfish ,Threatened species ,Biological dispersal ,Ecology, Evolution, Behavior and Systematics ,Sound (geography) - Abstract
Yelloweye rockfish Sebastes ruberrimus in the Puget Sound/Georgia Basin (PSGB) region are genetically differentiated from those of the outer Pacific coast of North America, while canary rockfish S. pinniger show no population structure between these regions. These characteristics helped determine each species’ status as a distinct population segment (DPS) under the US Endangered Species Act. Here, we explore larval dispersal patterns and test whether these patterns could explain the differences in population structure. We used a 3-D oceanographic model to simulate dispersal of each species’ larvae from sites inside and outside PSGB for up to 120 d. Dispersal patterns were similar across species and site-specific. Most larvae were found in the same DPS region or management basin from which they were released, but dispersal across boundaries was greatest from release sites nearest the DPS boundary for both species. Dispersal of larvae into the DPS from release sites outside the DPS increased and retention of larvae within the DPS increased with increasing pelagic larval duration, but this was also influenced by a simulated ontogenetic shift in larval depth distribution. The proportion of cross boundary dispersal observed for both species was likely high enough by Day 90 to allow gene flow across boundaries, which is consistent with the lack of population structure observed in canary rockfish but conflicts with the differentiated population structure observed in yelloweye rockfish. Understanding the potential larval dispersal pathways within and across management boundaries is an important step in the successful spatial management and recovery of important and protected species.
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- 2021
336. Empty Nose Syndrome Pathophysiology: A Systematic Review
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Richard J. Harvey, Dichapong Kanjanawasee, Janet Rimmer, Raewyn Campbell, Raymond Sacks, Jesada Kanjanaumporn, Kornkiat Snidvongs, Larry Kalish, and Raquel Alvarado
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Mechanism (biology) ,business.industry ,Syndrome ,Nose ,Turbinates ,medicine.disease ,Pathophysiology ,Cross-Sectional Studies ,Otorhinolaryngology ,Nose Diseases ,Empty nose syndrome ,medicine ,Humans ,Surgery ,Nasal Obstruction ,business ,Neuroscience - Abstract
The pathophysiology of empty nose syndrome (ENS) remains unclear despite significant research. The pathophysiologic mechanism of ENS was systematically reviewed.MEDLINE and Embase.Data were systematically reviewed for studies that provided original data on pathophysiology.A total of 2476 studies were screened, and 19 met the inclusion criteria: 13 case-control and 6 cross-sectional. Nine pathophysiologic themes were identified.• Demographics: ENS symptoms had no relationship with climatic factors.• Symptomatology: ENS patients demonstrated high symptom severity.• Mental health: Anxiety and depression including hyperventilation were reported in50% of ENS patients and correlated with ENS symptom severity.• Anatomic features: Structural changes in response to turbinate surgery were similar between ENS and non-ENS patients.• Airflow analysis: Airflow parameters were similar between ENS and non-ENS patients after turbinate surgery. On computational fluid dynamic analysis, differences were found on multiple outcomes.• Diagnostic testing: The menthol detection test was impaired in ENS, and cotton placement in the airway improved ENS symptoms.• Cognitive function: Functional magnetic resonance imaging showed activation in emotional processing area during breathing.• Olfactory function: Subjective impairment was reported in ENS, but quantitative measures were similar to non-ENS patients.• Mucosal physiology/innate immunity: Turbinate histopathology in ENS showed a tissue-remodeling pattern. Nasal nitric oxide level was lower in ENS patients.There is evidence of high comorbid mental health disorders in ENS patients. An abnormal trigeminal-thermoreceptor response may be present in some patients. The influence of altered airflow and the evidence of surgery as the cause for ENS are unclear.
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- 2021
337. Southern Hemisphere continental temperature responses to major volcanic eruptions since 1883 in CMIP5 models
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P. J. Harvey and S. W. Grab
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Atmospheric Science - Published
- 2021
338. Responsible Radionuclide Cancer Care
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J. Harvey Turner
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Pharmacology ,Cancer Research ,medicine.medical_specialty ,Radiotherapy ,business.industry ,Cancer ,General Medicine ,Medical Oncology ,medicine.disease ,Oncology ,Radiomics ,Artificial Intelligence ,Multidisciplinary approach ,Neoplasms ,medicine ,Humans ,Tumor board ,Radiologic Health ,Radiology, Nuclear Medicine and imaging ,Medical physics ,sense organs ,Precision Medicine ,Radionuclide Imaging ,skin and connective tissue diseases ,business - Abstract
The landscape of nuclear oncology is rapidly changing. The advent of molecular radionuclide theranostics, multidisciplinary tumor board decision making, artificial intelligence and radiomics interpretation of diagnostic imaging, evolution of pharmacogenomics prediction of tumor response, and regulatory requirements for prospective individual dosimetry are just some of the elements which are broadening the essence of physician responsibility. The burgeoning knowledge base essential for mastering the emergent technologies, and their profound effect on moral philosophic aspects of provision of cancer care, are challenging. The new relationship of the theranostic nuclear physician with respect to shared care of the individual patient, particularly with regard to transparency, accountability, and responsibility for targeted radionuclide diagnosis and therapy of cancer, will be explored in this update.
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- 2021
339. Importance of the Cyclic Cystine Knot Structural Motif for Immunosuppressive Effects of Cyclotides
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David J. Craik, Carsten Gründemann, Edin Muratspahić, Mina Vasileva, Peta J. Harvey, Johannes Koehbach, Christian W. Gruber, Roland Hellinger, and Seema Devi
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Protein Conformation ,Cell ,Cyclotides ,Peptide ,01 natural sciences ,Biochemistry ,Monocytes ,03 medical and health sciences ,medicine ,Humans ,Structural motif ,Cell Proliferation ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,010405 organic chemistry ,Chemistry ,Cystine knot ,Biological membrane ,General Medicine ,0104 chemical sciences ,Cyclotide ,Cytosol ,medicine.anatomical_structure ,Biophysics ,Molecular Medicine ,Cystine Knot Motifs ,Immunosuppressive Agents - Abstract
The cyclotide T20K inhibits the proliferation of human immune cells and is currently in clinical trials for multiple sclerosis. Here, we provide novel functional data and mechanistic insights into structure-activity relationships of T20K. Analogs with partial or complete reduction of the cystine knot had loss of function in proliferation experiments. Similarly, an acyclic analog of T20K was inactive in lymphocyte bioassays. The lack of activity of non-native peptide analogs appears to be associated with the ability of cyclotides to interact with and penetrate cell membranes, since cellular uptake studies demonstrated fast fractional transfer only of the native peptide into the cytosol of human immune cells. Therefore, structural differences between cyclic and linear native folded peptides were investigated by NMR to elucidate structure-activity relationships. Acyclic T20K had a less rigid backbone and considerable structural changes in loops 1 and 6 compared to the native cyclic T20K, supporting the idea that the cyclic cystine knot motif is a unique bioactive scaffold. This study provides evidence that this structural motif in cyclotides governs bioactivity, interactions with and transport across biological membranes, and the structural integrity of these peptides. These observations could be useful to understand the structure-activity of other cystine knot proteins due to the structural conservation of the cystine knot motif across evolution and to provide guidance for the design of novel cyclic cysteine-stabilized molecules.
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- 2021
340. Using the Alzheimer's Disease Neuroimaging Initiative to improve early detection, diagnosis, and treatment of Alzheimer's disease
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Paul S. Aisen, Michael W. Weiner, Danielle J Harvey, William J. Jagust, John Q. Trojanowski, Robert C. Green, Alzheimer’s Disease Neuroimaging Initiative, Susan M. Landau, Arthur W. Toga, Leslie M. Shaw, Ronald C. Petersen, Monica Rivera-Mindt, Duygu Tosun, Richard J. Perrin, John C. Morris, Laurel A. Beckett, Andrew J. Saykin, Clifford R. Jack, Ozioma C. Okonkwo, Dallas P. Veitch, and Charles DeCarli
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Oncology ,Aging ,Epidemiology ,Disease ,Neurodegenerative ,Alzheimer's Disease ,tau ,screening and diagnosis ,biology ,Health Policy ,AV1541 tau positron emission tomography ,amyloid ,plasma biomarker ,Detection ,Psychiatry and Mental health ,Neurological ,Cohort ,Disease Progression ,Biomedical Imaging ,Alzheimer's Disease Neuroimaging Initiative ,medicine.medical_specialty ,Amyloid beta ,Clinical Sciences ,Neuroimaging ,tau Proteins ,Cellular and Molecular Neuroscience ,disease progression ,mild cognitive impairment ,Developmental Neuroscience ,Alzheimer Disease ,Internal medicine ,mental disorders ,Acquired Cognitive Impairment ,medicine ,Humans ,Cognitive Dysfunction ,Amyloid beta-Peptides ,Vascular disease ,business.industry ,Prevention ,Neurosciences ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,medicine.disease ,Brain Disorders ,4.1 Discovery and preclinical testing of markers and technologies ,Biomarker (cell) ,Clinical trial ,Geriatrics ,biology.protein ,Dementia ,Neurology (clinical) ,Geriatrics and Gerontology ,business ,Biomarkers - Abstract
INTRODUCTION The Alzheimer's Disease Neuroimaging Initiative (ADNI) has accumulated 15 years of clinical, neuroimaging, cognitive, biofluid biomarker and genetic data, and biofluid samples available to researchers, resulting in more than 3500 publications. This review covers studies from 2018 to 2020. METHODS We identified 1442 publications using ADNI data by conventional search methods and selected impactful studies for inclusion. RESULTS Disease progression studies supported pivotal roles for regional amyloid beta (Aβ) and tau deposition, and identified underlying genetic contributions to Alzheimer's disease (AD). Vascular disease, immune response, inflammation, resilience, and sex modulated disease course. Biologically coherent subgroups were identified at all clinical stages. Practical algorithms and methodological changes improved determination of Aβ status. Plasma Aβ, phosphorylated tau181, and neurofilament light were promising noninvasive biomarkers. Prognostic and diagnostic models were externally validated in ADNI but studies are limited by lack of ethnocultural cohort diversity. DISCUSSION ADNI has had a profound impact in improving clinical trials for AD.
- Published
- 2021
341. Presence of ethanol‐sensitive and ethanol‐insensitive glycine receptors in the ventral tegmental area and prefrontal cortex in mice
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Luis G. Aguayo, Robert J. Harvey, Loreto San Martin, Anibal Araya, Scarlet Gallegos, Braulio Muñoz, Rodrigo Viveros, and Hanns Ulrich Zeilhofer
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Pharmacology ,Ethanol ,Protein subunit ,Ventral Tegmental Area ,Prefrontal Cortex ,Cell biology ,Mice, Inbred C57BL ,Ventral tegmental area ,Mice ,chemistry.chemical_compound ,Electrophysiology ,Receptors, Glycine ,medicine.anatomical_structure ,nervous system ,chemistry ,Glycine ,medicine ,Animals ,Prefrontal cortex ,Receptor ,Glycine receptor ,Picrotoxin - Abstract
BACKGROUND AND PURPOSE Glycine receptors composed of α1 and β subunits are primarily found in the spinal cord and brainstem and are potentiated by ethanol (10-100 mM). However, much less is known about the presence, composition and ethanol sensitivity of these receptors in higher CNS regions. Here, we examined two regions of the brain reward system, the ventral tegmental area (VTA) and the prefrontal cortex (PFC), to determine their glycine receptor subunit composition and sensitivity to ethanol. EXPERIMENTAL APPROACH We used Western blot, immunohistochemistry and electrophysiological techniques in three different models: wild-type C57BL/6, glycine receptor subunit α1 knock-in and glycine receptor subunit α2 knockout mice. KEY RESULTS Similar levels of α and β receptor subunits were detected in both brain regions, and electrophysiological recordings demonstrated the presence of glycine-activated currents in both areas. Sensitivity of glycine receptors to glycine was lower in the PFC compared with VTA. Picrotoxin only partly blocked the glycine-activated current in the PFC and VTA, indicating that both regions express heteromeric αβ receptors. Glycine receptors in VTA neurons, but not in PFC neurons, were potentiated by ethanol. CONCLUSION AND IMPLICATIONS Glycine receptors in VTA neurons from WT and α2 KO mice were potentiated by ethanol, but not in neurons from the α1 KI mice, supporting the conclusion that α1 glycine receptors are predominantly expressed in the VTA. By contrast, glycine receptors in PFC neurons were not potentiated in any of the mouse models studied, suggesting the presence of α2/α3/α4, rather than α1 glycine receptor subunits.
- Published
- 2021
342. Target Following Using a Vector Field Approach.
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Tommie Liddy, Tien-Fu Lu, and David J. Harvey
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- 2011
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343. Dynamic Obstacle Avoidance for an Ackerman Vehicle - A Vector Field Approach.
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Tommie Liddy, Tien-Fu Lu, and David J. Harvey
- Published
- 2011
344. Seasonal in situ observations of glyoxal and methylglyoxal over the temperate oceans of the Southern Hemisphere
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S. J. Lawson, P. W. Selleck, I. E. Galbally, M. D. Keywood, M. J. Harvey, C. Lerot, D. Helmig, and Z. Ristovski
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Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
The dicarbonyls glyoxal and methylglyoxal have been measured with 2,4-dinitrophenylhydrazine (2,4-DNPH) cartridges and high-performance liquid chromatography (HPLC), optimised for dicarbonyl detection, in clean marine air over the temperate Southern Hemisphere (SH) oceans. Measurements of a range of dicarbonyl precursors (volatile organic compounds, VOCs) were made in parallel. These are the first in situ measurements of glyoxal and methylglyoxal over the remote temperate oceans. Six 24 h samples were collected in summer (February–March) over the Chatham Rise in the south-west Pacific Ocean during the Surface Ocean Aerosol Production (SOAP) voyage in 2012, while 34 24 h samples were collected at Cape Grim Baseline Air Pollution Station in the late winter (August–September) of 2011. Average glyoxal mixing ratios in clean marine air were 7 ppt at Cape Grim and 23 ppt over Chatham Rise. Average methylglyoxal mixing ratios in clean marine air were 28 ppt at Cape Grim and 10 ppt over Chatham Rise. The mixing ratios of glyoxal at Cape Grim are the lowest observed over the remote oceans, while mixing ratios over Chatham Rise are in good agreement with other temperate and tropical observations, including concurrent Multi-Axis Differential Optical Absorption Spectroscopy (MAX-DOAS) observations. Methylglyoxal mixing ratios at both sites are comparable to the only other marine methylglyoxal observations available over the tropical Northern Hemisphere (NH) ocean. Ratios of glyoxal : methylglyoxal > 1 over Chatham Rise but < 1 at Cape Grim suggest that a different formation and/or loss processes or rates dominate at each site. Dicarbonyl precursor VOCs, including isoprene and monoterpenes, are used to calculate an upper-estimate yield of glyoxal and methylglyoxal in the remote marine boundary layer and explain at most 1–3 ppt of dicarbonyls observed, corresponding to 10% and 17% of the observed glyoxal and 29 and 10% of the methylglyoxal at Chatham Rise and Cape Grim, respectively, highlighting a significant but as yet unknown production mechanism. Surface-level glyoxal observations from both sites were converted to vertical columns and compared to average vertical column densities (VCDs) from GOME-2 satellite retrievals. Both satellite columns and in situ observations are higher in summer than winter; however, satellite vertical column densities exceeded the surface observations by more than 1.5 × 1014 molecules cm−2 at both sites. This discrepancy may be due to the incorrect assumption that all glyoxal observed by satellite is within the boundary layer, or it may be due to challenges retrieving low VCDs of glyoxal over the oceans due to interferences by liquid water absorption or the use of an inappropriate normalisation reference value in the retrieval algorithm. This study provides much-needed data to verify the presence of these short-lived gases over the remote ocean and provide further evidence of an as yet unidentified source of both glyoxal and also methylglyoxal over the remote oceans.
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- 2015
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345. Phage display-based discovery of cyclic peptides against the broad spectrum bacterial anti-virulence target CsrA
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Valentin Jakob, Ben G.E. Zoller, Julia Rinkes, Yingwen Wu, Alexander F. Kiefer, Michael Hust, Saskia Polten, Andrew M. White, Peta J. Harvey, Thomas Durek, David J. Craik, Andreas Siebert, Uli Kazmaier, and Martin Empting
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Pharmacology ,Virulence ,Organic Chemistry ,Competitive CsrA inhibition ,Disulfide bridges ,General Medicine ,Peptides, Cyclic ,Carbon ,Disulfide mimetics ,Pseudomonas aeruginosa ,Drug Discovery ,Triazole bridge ,Bacteriophages ,Phage display ,Peptides - Abstract
Small macrocyclic peptides are promising candidates for new anti-infective drugs. To date, such peptides have been poorly studied in the context of anti-virulence targets. Using phage display and a self-designed peptide library, we identified a cyclic heptapeptide that can bind the carbon storage regulator A (CsrA) from Yersinia pseudotuberculosis and displace bound RNA. This disulfide-bridged peptide, showed an IC50 value in the low micromolar range. Upon further characterization, cyclisation was found to be essential for its activity. To increase metabolic stability, a series of disulfide mimetics were designed and a redox-stable 1,4-disubstituted 1,2,3-triazole analogue displayed activity in the double-digit micromolar range. Further experiments revealed that this triazole peptidomimetic is also active against CsrA from Escherichia coli and RsmA from Pseudomonas aeruginosa. This study provides an ideal starting point for medicinal chemistry optimization of this macrocyclic peptide and might pave the way towards broad-acting virulence modulators.
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- 2022
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346. A Delphi Process for Reaching Nationwide Consensus on Antimicrobial Intravenous-to-oral Switch Criteria and Development of an Antimicrobial Intravenous-to-oral Switch Decision Aid
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Eleanor J Harvey, Kieran Hand, Dale Weston, and Diane Ashiru-Oredope
- Abstract
IntroductionAntimicrobial stewardship (AMS) strategies, such as intravenous-to-oral switch (IVOS), promote optimal antimicrobial use, contributing to safer and more effective patient care and tackling antimicrobial resistance (AMR).AimThis study aimed to achieve nationwide multidisciplinary expert consensus on antimicrobial IVOS criteria for timely switch in hospitalised adult patients and to design an IVOS decision aid to operationalise agreed IVOS criteria in the hospital setting.MethodA 4-step Delphi process was chosen to achieve expert consensus on IVOS criteria and decision aid; it included Step One) Pilot/1stround questionnaire, Step Two) Virtual meeting, Step Three) 2ndround questionnaire and Step 4) Workshop. This study follows the Appraisal of Guidelines for Research and Evaluation II instrument checklist.ResultsStep One questionnaire of 42 IVOS criteria had 24 respondents, 15 of whom participated in Step Two, where 37 criteria were accepted for the next step. Step Three had 242 respondents (England n=195, Northern Ireland n=18, Scotland n=18, Wales n=11); 27 criteria were accepted. Step Four had 48 survey respondents and 33 workshop participants; where consensus was achieved for 24 criteria and comments received on a proposed IVOS decision aid. Research recommendations include the use of evidence-based standardised IVOS criteria.Discussion and ConclusionThis study achieved nationwide expert consensus on antimicrobial IVOS criteria for timely switch in the hospitalised adult population. For criteria operationalisation, an IVOS decision aid was developed. Further research is required to provide clinical validation of the consensus IVOS criteria and to expand this work into the paediatric and international settings.
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- 2022
347. Comparing Sentinel-2 and Landsat 8 for Burn Severity Mapping in Western North America
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Alexander A. Howe, Sean A. Parks, Brian J. Harvey, Saba J. Saberi, James A. Lutz, and Larissa L. Yocom
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General Earth and Planetary Sciences ,fire severity ,wildfire ,temperate forests ,composite burn index ,Google Earth Engine ,image compositing ,spectral indices ,atmospheric correction ,spatial scale ,imagery resolution - Abstract
Accurate assessment of burn severity is a critical need for an improved understanding of fire behavior and ecology and effective post-fire management. Although NASA Landsat satellites have a long history of use for remotely sensed mapping of burn severity, the recently launched (2015 and 2017) European Space Agency Sentinel-2 satellite constellation offers increased temporal and spatial resolution with global coverage, combined with free data access. Evaluations of burn severity derived from Landsat and Sentinel generally show comparable results, but these studies only assessed a small number of fires with limited field data. We used 912 ground calibration plots from 26 fires that burned between 2016 and 2019 in western North America to compare Sentinel- and Landsat-derived burn severity estimates with the field-based composite burn index. We mapped burn severity using two methods; the well-established paired scene approach, in which a single pre- and post-fire scene are selected for each fire, and also a mean image compositing approach that automatically integrates multiple scenes using the cloud-based remote sensing platform Google Earth Engine. We found that Sentinel generally performed as well or better than Landsat for four spectral indices of burn severity, particularly when using atmospherically corrected Sentinel imagery. Additionally, we tested the effects of mapping burn severity at Sentinel’s finer spatial resolution (10 m) on estimates of the spatial complexity of stand-replacing fire, resulting in a 5% average reduction per-fire in area mapped as high-severity patch interiors (24,273 ha total) compared to mapping at the resolution of Landsat (30 m). These findings suggest Sentinel may improve ecological discrimination of fine-scale fire effects, but also warrant caution when comparing estimates of burn severity spatial patterns derived at different resolutions. Overall, these results indicate that burn severity mapping will benefit substantially from the integration of Sentinel imagery through increased imagery availability, and that Sentinel’s higher spatial resolution improves opportunities for examining finer-scale fire effects across ecosystems.
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- 2022
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348. Human FSH Glycoform α-Subunit Asparagine52 Glycans: Major Glycan Structural Consistency, Minor Glycan Variation in Abundance
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Viktor Y. Butnev, Jeffrey V. May, Alan R. Brown, Tarak Sharma, Vladimir Y. Butnev, William K. White, David J. Harvey, and George R. Bousfield
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Polysaccharides ,Endocrinology, Diabetes and Metabolism ,Humans ,Receptors, FSH ,Follicle Stimulating Hormone, Human ,Asparagine ,Follicle Stimulating Hormone ,Fucose - Abstract
Follicle-stimulating hormone (FSH), an α/β heterodimeric glycoprotein hormone, consists of functionally significant variants resulting from the presence or absence of either one of two FSHβ subunit N-glycans. The two most abundant variants are fully-glycosylated FSH24 (based on 24 kDa FSHβ band in Western blots) and hypo-glycosylated FSH21 (21 kDa band, lacks βAsn24 glycans). Due to its ability to bind more rapidly to the FSH receptor and occupy more FSH binding sites than FSH24, hypo-glycosylated FSH21 exhibits greater biological activity. Endoglycosidase F1-deglycosylated FSH bound to the complete extracellular domain of the FSH receptor crystallized as a trimeric complex. It was noted that a single biantennary glycan attached to FSHα Asn52 might preemptively fill the central pocket in this complex and prevent the other two FSH ligands from binding the remaining ligand-binding sites. As the most active FSH21 preparations possessed more rapidly migrating α-subunit bands in Western blots, we hypothesized that Asn52 glycans in these preparations were small enough to enable greater FSH21 receptor occupancy in the putative FSHR trimer model. Highly purified hFSH oligosaccharides derived from each FSH subunit, were characterized by electrospray ionization-ion mobility-collision-induced dissociation (ESI-IM-CID) mass spectrometry. FSHβ glycans typically possessed core-linked fucose and were roughly one third bi-antennary, one third tri-antennary and one third tetra-antennary. FSHα oligosaccharides largely lacked core fucose and were bi- or tri-antennary. Those αAsn52 glycans exhibiting tetra-antennary glycan m/z values were found to be tri-antennary, with lactosamine repeats accounting for the additional mass. Selective αAsn52 deglycosylation of representative pituitary hFSH glycoform Superdex 75 gel filtration fractions followed by ESI-IM-CID mass spectrometry revealed tri-antennary glycans predominated even in the lowest molecular weight FSH glycoforms. Accordingly, the differences in binding capacity of the same receptor preparation to different FSH glycoforms are likely the organization of the FSH receptor in cell membranes, rather than the αAsn52 oligosaccharide.
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- 2022
349. Fire interval and post-fire climate effects on serotinous forest resilience
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Michelle C. Agne, Joseph B. Fontaine, Neal J. Enright, and Brian J. Harvey
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Forestry ,Environmental Science (miscellaneous) ,Ecology, Evolution, Behavior and Systematics - Abstract
Background Climate change is eroding forest resilience to disturbance directly through warming climate and indirectly through increasing disturbance activity. Forests characterized by stand-replacing fire regimes and dominated by serotinous species are at risk when the inter-fire period is insufficient for canopy seed bank development and climate conditions for recruitment in the post-fire growing season are unsuitable. Although both factors are critical to serotinous forest persistence, their relative importance for post-fire regeneration in serotinous forests remains poorly understood. To assess the relative effects of each factor, we established plots in severely burned knobcone pine (Pinus attenuata Lemmon) forests in Oregon and California, USA, representing a range of past fire intervals (6 to 31+ years). Specifically, we evaluated effects of fire interval and pre-fire canopy seed bank (proxies for seed supply) and post-fire climate on three metrics of post-fire tree regeneration (seedling density, probability of self-replacement, percent population recovery). Results Seed supply consistently had the strongest effect on post-fire regeneration. Between 6- and 31-year fire intervals, post-fire seedling density increased from 1000 to 100,000 seedlings ha−1, while probability of self-replacement increased from ~ 0 to ~ 100% and percent population recovery increased from 20 to 2000% of the pre-fire population, respectively. Similarly, increasing the canopy seed bank by two orders of magnitude increased seedling density and percent population recovery by two orders and one order of magnitude, respectively, and increased the probability of self-replacement by > 50%. Greater post-fire climatic moisture deficit exacerbated the effect of seed supply; an additional 4–6 years between fires was required under high moisture stress conditions to reach similar regeneration levels as under low moisture stress conditions. Conclusion The overriding effect of seed supply—strongly driven by pre-fire stand age—on post-fire regeneration suggests that altered fire frequency (an indirect effect of climate change) will have a profound impact on serotinous forests. Although direct effects of hot and dry climate are lower in magnitude, they can alter forest recovery where seed supply nears a threshold. These findings reveal how fire interval and climate combine to determine changes in forest cover in the future, informing management and vulnerability mapping.
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- 2022
350. Validation of the one minute sit to stand test (1MSTS) for identification of exertional oxygen desaturation in chronic respiratory disease
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J Harvey, S Patel, H Littlemore, T Jenkins, C Nolan, and W Man
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- 2022
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