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An exopolysaccharide (EPS)-producing heavy metal-resistant Gram-negative bacterium was isolated from ore-contaminated soil. The selected strain was identified by 16S rDNA sequencing and designated as Halomonas sp. MG. Phylogenetic analysis of the gene sequence showed its close similarity with Halomonas sp. Field emission scanning electron microscopy analysis revealed that the EPS had a porous structure with small pores. X-ray diffractograms showed the non-crystalline nature of the EPS. Further, FTIR spectroscopic analysis revealed the presence of carboxyl, hydroxyl and amide groups corresponding to a typical EPS.

Silver nanoparticle (AgNP) synthesis and characterization is an area of vast interest due to their broader application in the fields of science and technology and medicine. Plants are an attractive source for AgNP synthesis because of its ability to produce a wide range of secondary metabolites with strong reducing potentials. Thus, the present study describes the synthesis of AgNPs using aqueous rhizome extract of Acorus calamus (sweet flag). The AgNP formation was evaluated at different temperatures, incubation time and concentrations of AgNO 3 using Response surface methodology based Box-Behnken design (BBD). The synthesized AgNPs were characterized by UV-Visible spectroscopy, Fourier transform infra-red spectroscopy (FTIR), X-ray diffraction (XRD), and Scanning electron microscopy-energy-dispersive spectroscopy (SEM-EDS). The surface plasmon resonance found at 420 nm confirmed the formation of AgNPs. SEM images reveal that the particles are spherical in nature. The EDS analysis of the AgNPs, using an energy range of 2-4 keV, confirmed the presence of elemental silver without any contamination. The antibacterial activity of synthesized AgNPs was evaluated against the clinical isolates Staphylococcus aureus and Escherichia coli and it was found that bacterial growth was significantly inhibited in a dose dependent manner. The results suggest that the AgNPs from rhizome extract could be used as a potential antibacterial agent for commercial application.

The study was aimed to evaluate the potential of organic formulation, panchakavya, for enhancing the biological leaching of Pb and Cu in contaminated mine soil. Response surface methodology based Box-Behnken design was used to optimize the variables such as incubation time, panchakavya concentration, and agitation rate. The maximum bioleaching (Pb=64% and Cu=49%) was observed after 54 h of incubation with 10 mL panchakavya at 120 rpm. Statistics-based contour and three-dimensional plots were generated to understand the relationship between Pb and Cu bioleaching and variables. High-performance liquid chromatography analysis showed the presence of lactic (25.88 mg g(-1)), citric (0.14 mg g(-1)), succinic (0.14 mg g(-1)), malic (0.66 mg g(-1)), and acetic (0.44 mg g(-1)) acids in panchakavya, which may have a vital role in the removal of metals from the contaminated soil. Soil fraction studies indicate a significant increase of Pb (45%) in the exchangeable fraction of panchakavya-treated soil. XRD studies confirmed the role of panchakavya induced calcite and other minerals in the precipitation of metal ions. A significant increase in the enzyme activities of phosphatase, dehydrogenase, urease, amylase, invertase, and cellulase were observed in the panchakavya-treated soil., (Copyright © 2015 Elsevier Ltd. All rights reserved.)

The aim of the study was to isolate and characterize potential multi-metal-resistant bacteria from ore soils. A total of three bacteria were isolated and assayed for resistance to arsenic (As), copper (Cu), and lead (Pb). Isolate Halomonas sp. MG exhibited maximum resistance to 1000 mg Pb/L, 800 mg As/L, and 500 mg Cu/L and it was identified as Halomonas sp. based on the partial 16S rDNA sequences. The metal(loid)s resistance mechanisms were further confirmed by amplification of arsC (As) copAU (Cu), and pbrT (Pb) genes. Biological transmission electron micrographs and XRD studies showed that the isolate Halomonas sp. MG transformed and/or biomineralized the metals either intracellularly or extracellularly. These results suggest that the isolate could be used as a potential candidate for the bioremediation of As, Cu, and Pb.

This study investigated the expression rate and molecular modeling of Wzb gene, a low molecular weight protein tyrosine phosphatase, under As stress in Herbaspirillum sp. GW103. Expression of Wzb gene was quantified at transcriptional level through real-time quantitative PCR. The results showed up- and down-regulations of Wzb gene in the presence of As (50 and 100 mg/L). The maximum Wzb transcript expression was 1.2-fold after 72 h exposure to 50 mg/L of As. However, the minimum expression was 0.1-fold after 48 h exposure to 100 mg/L of As. The Wzb protein sequence was retrieved from NCBI sequence database and was used for in silico analysis. 3D structure of Wzb gene was predicted by comparative modeling using modeler 9v9. Further, the model was validated for its quality by Ramachandran plot, ERRAT, Verify 3D, and SAVES server which revealed structure and quality of the Wzb gene model.

Centella asiatica (Umbelliferae) has been used for centuries in Indian ayurvedic medicine for the treatment of a wide number of health disorders. The aim of this study was to estimate and compare the concentration of bioactive compounds between wild and in vitro propagated C. asiatica plants. A marked decrease in the total phenolic compounds, flavonoids, and ascorbic acid was observed between in vitro propagated and wild type plants collected from wet land habitat. The radical scavenging activity of the wild type plant extracts also varied with the habitats. This study clearly indicates that environmental factors play a crucial role in the plant metabolic activity and medicinal activity.

This study investigated the mechanism of arsenic resistance in the diazotrophic bacterium Herbaspirillum sp. GW103 isolated from rhizosphere soil of Phragmites austrails. The isolate Herbaspirillum sp. GW103 exhibited maximum tolerance to arsenic (550 mg/L). Four different arsenate reductase (arsC) genes (arsC1, arsC2, arsC3 and arsC4) were located in the genome of the isolate Herbaspirillum sp. GW103. The expression pattern of the arsC1 differed from other genes. All four types of arsC genes had different protein secondary structures and stereochemical properties. Molecular modeling and structural analysis of arsC genes revealed close structural homology with arsC family proteins from Escherichia coli (PDB ID: 1I9D) and Pseudomonas aeruginosa (PDB ID: 1RW1)., (Copyright © 2015 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.)

This study was aimed at assess the potential of diazotrophic bacteria, Herbaspirillum sp. GW103, for bioleaching of Cu in mine soil. The strain exhibited resistance to As (550mgL(-1)), Cu (350mgL(-1)), Zn (300mgL(-1)) and Pb (200mgL(-1)). The copper resistance was further confirmed by locating copA and copB genes. The survival of the isolate GW103 during bioleaching was analyzed using green fluorescent protein tagged GW103. Response surface methodology based Box-Behnken design was used to optimize the physical and chemical conditions for Cu bioleaching. Five significant variables (temperature, incubation time, CaCO3, coconut oil cake (COC), agitation rate) were selected for the optimization. Second-order polynomials were established to identify the relationship between Cu bioleaching and variables. The optimal conditions for maximum Cu bioleaching (66%) were 30°C, 60h of incubation with 1.75% of CaCO3 and 3% COC at 140rpm. The results of Cu sequential extraction studies indicated that the isolate GW103 leached Cu from ion-exchangeable, reducible, strong organic and residual fractions. Obtained results point out that the isolate GW103 could be used for bioleaching of Cu from mine soils., (Copyright © 2014 Elsevier Ltd. All rights reserved.)

Protease production by Bacillus sp. SKK11 isolated from brackish environment was studied by solid-state fermentation with horse gram husk. Response surface methodology-based Box-Behnken design (BBD) was used to optimize the variables such as pH, maltose, and MgSO₄. The BBD design analysis showed a reasonable adjustment of the quadratic model with the experimental data. Statistics-based contour and three-dimensional (3-D) plots were generated to evaluate the changes in the response surface and to understand the relationship between the enzyme yield and the culture conditions. The maximum yield of the enzyme was observed at pH 9.0.

The aim of the study was to isolate and characterize potential autochthonous bacteria for biomineralization of Pb in mine tailings. A total of four bacteria were isolated from the soil samples and assayed for tolerance to Pb and other heavy metals. Isolate KK1 exhibited maximum Pb resistance and was subsequently identified as Bacillus sp. based on the partial 16S rRNA gene sequences. The isolate KK1 reduced the Pb ions and did not harbor pbrT gene. Selective sequential extraction of bioaugmented soil revealed that the isolate significantly reduced (26%) the exchangeable fraction and increased (38%) the carbonate fraction of Pb. X-ray diffraction studies confirmed the role of bacterially induced calcite precipitation in the bioremediation of mine tailings. A significant increase in the urease (334%), DHO (dehydrogenase) (14%), and phosphatase (37%) activity was observed in the bioaugmented mine soil., (Copyright © 2012 Elsevier Ltd. All rights reserved.)