123 results on '"Di Cesare, Andrea"'
Search Results
102. Resistance to Biocides in Listeria monocytogenes Collected in Meat-Processing Environments
- Author
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Conficoni, Daniele, primary, Losasso, Carmen, additional, Cortini, Enzo, additional, Di Cesare, Andrea, additional, Cibin, Veronica, additional, Giaccone, Valerio, additional, Corno, Gianluca, additional, and Ricci, Antonia, additional
- Published
- 2016
- Full Text
- View/download PDF
103. Enterococcus faeciumST17 from Coastal Marine Sediment Carrying Transferable Multidrug Resistance Plasmids
- Author
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Morroni, Gianluca, primary, Di Cesare, Andrea, additional, Di Sante, Laura, additional, Brenciani, Andrea, additional, Vignaroli, Carla, additional, Pasquaroli, Sonia, additional, Giovanetti, Eleonora, additional, Sabatino, Raffaella, additional, Rossi, Luigia, additional, Magnani, Mauro, additional, and Biavasco, Francesca, additional
- Published
- 2016
- Full Text
- View/download PDF
104. Fitness and Recovery of Bacterial Communities and Antibiotic Resistance Genes in Urban Wastewaters Exposed to Classical Disinfection Treatments
- Author
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Di Cesare, Andrea, primary, Fontaneto, Diego, additional, Doppelbauer, Julia, additional, and Corno, Gianluca, additional
- Published
- 2016
- Full Text
- View/download PDF
105. Co-selection of antibiotic and heavy metal resistance in freshwater bacteria
- Author
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Di Cesare, Andrea, primary, Eckert, Ester, additional, and Corno, Gianluca, additional
- Published
- 2016
- Full Text
- View/download PDF
106. Genome analysis of the freshwater planktonic <italic>Vulcanococcus limneticus</italic> sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization.
- Author
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Di Cesare, Andrea, Cabello-Yeves, Pedro J., Chrismas, Nathan A. M., Sánchez-Baracaldo, Patricia, Salcher, Michaela M., and Callieri, Cristiana
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FRESHWATER plankton ,NITROGENASE genetics ,OXIDOREDUCTASE genetics ,PHYSIOLOGICAL effects of atmospheric nitrogen dioxide ,FRESHWATER habitat conservation ,FRESHWATER ecology - Abstract
Background: Many cyanobacteria are capable of fixing atmospheric nitrogen, playing a crucial role in biogeochemical cycling. Little is known about freshwater unicellular cyanobacteria
Synechococcus spp. at the genomic level, despite being recognised of considerable ecological importance in aquatic ecosystems. So far, it has not been shown whether these unicellular picocyanobacteria have the potential for nitrogen fixation. Here, we present the draft-genome of the new pink-pigmentedSynechococcus -like strainVulcanococcus limneticus. sp. nov., isolated from the volcanic Lake Albano (Central Italy). Results: The novel speciesVulcanococcus limneticus sp. nov. falls inside the sub-cluster 5.2, close to the estuarine/marine strains in a maximum-likelihood phylogenetic tree generated with 259 marker genes with representatives from marine, brackish, euryhaline and freshwater habitats.V.limneticus sp. nov. possesses a complete nitrogenase andnif operon. In an experimental setup under nitrogen limiting and non-limiting conditions, growth was observed in both cases. However, the nitrogenase genes (nifHDK) were not transcribed, i.e.,V.limneticus sp. nov. did not fix nitrogen, but instead degraded the phycobilisomes to produce sufficient amounts of ammonia. Moreover, the strain encoded many other pathways to incorporate ammonia, nitrate and sulphate, which are energetically less expensive for the cell than fixing nitrogen. The association of thenif operon to a genomic island, the relatively high amount of mobile genetic elements (52 transposases) and the lower observed GC content ofV.limneticus sp. nov.nif operon (60.54%) compared to the average of the strain (68.35%) support the theory that this planktonic strain may have obtained, at some point of its evolution, thenif operon by horizontal gene transfer (HGT) from a filamentous or heterocystous cyanobacterium. Conclusions: In this study, we describe the novel speciesVulcanococcus limneticus sp. nov., which possesses a completenif operon for nitrogen fixation. The finding that in our experimental conditionsV.limneticus sp. nov. did not express thenifHDK genes led us to reconsider the actual ecological meaning of these accessory genes located in genomic island that have possibly been acquired via HGT. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
107. The microbiome associated with two Synechococcus ribotypes at different levels of ecological interaction.
- Author
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Callieri, Cristiana, Amalfitano, Stefano, Corno, Gianluca, Di Cesare, Andrea, Bertoni, Roberto, Eckert, Ester M., and Cock, M.
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SYNECHOCOCCUS ,CYANOBACTERIA ,BACTERIAL communities ,MICROBIAL diversity ,PREDATION - Abstract
Planktonic cyanobacteria belonging to the genus Synechococcus are ubiquitously distributed in marine and fresh waters, substantially contributing to total carbon fixation on a global scale. While their ecological relevance is acknowledged, increasing resolution in molecular techniques allows disentangling cyanobacteria's role at the micro-scale, where complex microbial interactions may drive the overall community assembly. The interplay between phylogenetically different Synechococcus clades and their associated bacterial communities can affect their ecological fate and susceptibility to protistan predation. In this study, we experimentally promoted different levels of ecological interaction by mixing two Synechococcus ribotypes ( MW101C3 and LL) and their associated bacteria, with and without a nanoflagellate grazer ( Poterioochromonas sp.) in laboratory cultures. The beta-diversity of the Synechococcus-associated microbiome in laboratory cultures indicated that the presence of the LL ribotype was the main factor determining community composition changes (41% of total variance), and prevailed over the effect of protistan predation (18% of total variance). Our outcomes also showed that species coexistence and predation may promote microbial diversity, thus highlighting the underrated ecological relevance of such micro-scale factors. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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108. The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcuschallenges our understanding of global “deep red fluorescence”
- Author
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Callieri, Cristiana, Slabakova, Violeta, Dzhembekova, Nina, Slabakova, Nataliya, Peneva, Elisaveta, Cabello-Yeves, Pedro J, Di Cesare, Andrea, Eckert, Ester M, Bertoni, Roberto, Corno, Gianluca, Salcher, Michaela M, Kamburska, Lyudmila, Bertoni, Filippo, and Moncheva, Snejana
- Abstract
The Black Sea is the largest meromictic sea with a reservoir of anoxic water extending from 100 to 1000 m depth. These deeper layers are characterised by a poorly understood fluorescence signal called “deep red fluorescence”, a chlorophyll a- (Chl a) like signal found in deep dark oceanic waters. In two cruises, we repeatedly found up to 103cells ml-1of picocyanobacteria at 750 m depth in these waters and isolated two phycoerythrin-rich Synechococcussp. strains (BS55D and BS56D). Tests on BS56D revealed its high adaptability, involving the accumulation of Chl ain anoxic/dark conditions and its capacity to photosynthesise when re-exposed to light. Whole-genome sequencing of the two strains showed the presence of genes that confirms the putative ability of our strains to survive in harsh mesopelagic environments. This discovery provides new evidence to support early speculations associating the “deep red fluorescence” signal to viable picocyanobacteria populations in the deep oxygen-depleted oceans, suggesting a reconsideration of the ecological role of a viable stock of Synechococcusin dark deep waters.
- Published
- 2019
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109. Constitutive presence of antibiotic resistance genes within the bacterial community of a large subalpine lake
- Author
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Di Cesare, Andrea, primary, Eckert, Ester M., additional, Teruggi, Alessia, additional, Fontaneto, Diego, additional, Bertoni, Roberto, additional, Callieri, Cristiana, additional, and Corno, Gianluca, additional
- Published
- 2015
- Full Text
- View/download PDF
110. Effect of starvation on survival and virulence expression of Aeromonas hydrophila from different sources
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Casabianca, Anna, primary, Orlandi, Chiara, additional, Barbieri, Federica, additional, Sabatini, Luigia, additional, Di Cesare, Andrea, additional, Sisti, Davide, additional, Pasquaroli, Sonia, additional, Magnani, Mauro, additional, and Citterio, Barbara, additional
- Published
- 2014
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111. Enterococcus faecium ST17 from Coastal Marine Sediment Carrying Transferable Multidrug Resistance Plasmids.
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Morroni, Gianluca, Di Cesare, Andrea, Di Sante, Laura, Brenciani, Andrea, Vignaroli, Carla, Pasquaroli, Sonia, Giovanetti, Eleonora, Sabatino, Raffaella, Rossi, Luigia, Magnani, Mauro, and Biavasco, Francesca
- Subjects
- *
ENTEROCOCCUS faecium , *MARINE sediments , *MULTIDRUG resistance , *PLASMIDS , *ANTIBIOTICS - Abstract
The multidrug-resistant Enterococcus faecium 17i48, sequence type 17, from marine sediment, carrying erm(B), tet(M), and tet(L) genes, was analyzed for the presence of antibiotic resistance plasmids and for the ability to transfer resistance genes. The strain was found to harbor the replicon type ( repA) of pRE25, pRUM, pHTβ, and the axe-txe toxin-antitoxin (TA) system. In mating experiments, tet(M) and tet(L) were cotransferred with the repApRE25, whereas erm(B) was consistently cotransferred with the axe-txe and repApRUM, suggesting that tetracycline and erythromycin resistance genes were carried on different elements both transferable by conjugation, likely via pHTβ-mediated mobilization. Hybridization and PCR mapping demonstrated that tet(M) and tet(L) were located in tandem on a pDO1-like plasmid that also carried the repApRE25, whereas erm(B) was carried by a pRUM-like plasmid. Sequencing of the latter plasmid showed a high nucleotide identity with pRUM and the presence of cat, aadE, sat4, and a complete aphA resistance genes. These findings show that the genetic features of E. faecium 17i48 are consistent with a hospital-adapted clone and suggest that antibiotic resistance may spread in the environment, also in the absence of antibiotic pressure, due to TA system plasmid maintenance. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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112. Adhesion of marine cryptic Escherichia isolates to human intestinal epithelial cells
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Vignaroli, Carla, primary, Di Sante, Laura, additional, Magi, Gloria, additional, Luna, Gian Marco, additional, Di Cesare, Andrea, additional, Pasquaroli, Sonia, additional, Facinelli, Bruna, additional, and Biavasco, Francesca, additional
- Published
- 2014
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113. The marine environment as a reservoir of enterococci carrying resistance and virulence genes strongly associated with clinical strains
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Di Cesare, Andrea, primary, Pasquaroli, Sonia, additional, Vignaroli, Carla, additional, Paroncini, Paolo, additional, Luna, Gian Marco, additional, Manso, Esther, additional, and Biavasco, Francesca, additional
- Published
- 2013
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114. Aquaculture Can Promote the Presence and Spread of Antibiotic-Resistant Enterococci in Marine Sediments
- Author
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Di Cesare, Andrea, primary, Luna, Gian Marco, additional, Vignaroli, Carla, additional, Pasquaroli, Sonia, additional, Tota, Sara, additional, Paroncini, Paolo, additional, and Biavasco, Francesca, additional
- Published
- 2013
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115. Antibiotic-Resistant Enterococci in Seawater and Sediments from a Coastal Fish Farm
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Di Cesare, Andrea, primary, Vignaroli, Carla, additional, Luna, Gian Marco, additional, Pasquaroli, Sonia, additional, and Biavasco, Francesca, additional
- Published
- 2012
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116. Adhesion of marine cryptic Escherichia isolates to human intestinal epithelial cells.
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Vignaroli, Carla, Sante, Laura Di, Magi, Gloria, Luna, Gian Marco, Di Cesare, Andrea, Pasquaroli, Sonia, Facinelli, Bruna, and Biavasco, Francesca
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ENTEROBACTERIACEAE ,REGENERATION (Biology) ,EXFOLIATIVE cytology ,EPITHELIAL cells ,EMBRYOLOGY - Abstract
Five distinct cryptic lineages (clades I-V) have recently been recognized in the Escherichia genus. The five clades encompass strains that are phenotypically and taxonomically indistinguishable from Escherichia coli sensu stricto; however, scant data are available on their ecology, virulence and pathogenic properties. In this study 20 cryptic E. coli strains isolated from marine sediments were investigated to gain insights into their virulence characteristics and genetic traits. The ability to adhere to intestinal cells was highest among clade V strains, which also harbored the genes involved in gut colonization as well as the genes (pduC and eut operon) typically found in environmentally adapted E. coli strains. The pduC gene was significantly associated with clade V. Multilocus sequence typing of three representative clade V isolates revealed new sequence types (STs) and showed that the strains shared two allelic loci (adk 51 and recA 37). Our findings suggest that cryptic Escherichia lineages are common in coastal marine sediments and that this habitat may be suitable for their growth and persistence outside the host. On the other hand, detection in clade V strains of a gene repertoire and adhesion properties similar to those of intestinal pathogenic strains could indicate their potential virulence. It could be argued that there is a dual nature of cryptic clade V strains, where the ability to survive and persist in a secondary habitat does not involve the loss of the host-associated lifestyle. Clade V could be a group of closely related, environmentally adapted E. coli strains. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
117. IT08-A Laghi Sudalpini
- Author
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Salmaso, Nico, Bresciani, Mariano, Buzzi, Fabio, Ciampittiello, Marzia, Leoni, Barbara, Piscia, Roberta, Rogora, Michela, Austoni, Martina, Beltrami, Monica, Bertoni, Roberto, Boggero, Angela, Boscaini, Adriano, Brivio, Pietro Alessandro, Callieri, Cristiana, Cerutti, Igor, Cappelletti, Cristina, Carrara, Paola, Cerasino, Leonardo, Ciutti, Francesca, Corno, Gianluca, Crippa, Evelina, Di Cesare, Andrea, Dresti, Claudia, Eckert, Ester, Foglini, Claudio, Fontaneto, Diego, Galafassi, Silvia, Giacomotti, Paola, Giardino, Claudia, Guilizzoni, Piero, Iaia, Mattia, Lami, Andrea, Lella, Simone, Manca, Dario, Manca, Marina, Marchetto, Aldo, Mosello, Rosario, Musanti, Mauro, Nava, Veronica, Oggioni, Alessandro, Orr��, Arianna, Patelli, Martina, Riccardi, Nicoletta, Saidi, Helmi, Sala, Paolo, Soler, Valentina, Tartari, Gabriele A., Tolotti, Monica, Volta, Pietro, and Zaupa, Silvia
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Biological communities and trophic networks ,13. Climate action ,LTER-Italy ,Ecological quality ,Climate change ,Paleolymnology ,Biodiversity ,LTER ,Eutrophication ,Remote sensing ,Ecotoxicology - Abstract
The Macrosite "IT08 Subalpine Lakes" includes a group of lakes located at the southern border of the Alps. The lake typologies are represented by large and deep lakes (Orta, Garda, Maggiore, Como and Iseo) and by a lake of smaller size and shallow depth (Candia). Topics common to all the research sites include the impact of eutrophication and climate change, the composition, structure and dynamics of biological communities (plankton, necton and littoral communities), trophic webs, paleolimnology, ecotoxicology, ecological status and remote sensing. Scientific investigations are supported by a wide availability of technological infrastructures and laboratories located in the reference institutions, and by a wide range of technological equipment for fieldwork. These facilities, funded within the individual institutes involved in the research, have allowed not only to maintain, but also to update the classical approaches used in scientific monitoring, while opening up new research fields (especially molecular ecology, microbial ecology, metabolomic profiling, antibiotic resistance genes, high frequency monitoring by sensor technology). Over the last decade, the continuity and regularity of investigations have been facilitated by the availability of both external and ordinary funds. The variety of research activities carried out on the IT08 macrosite is evidenced by the publication of numerous scientific papers, as well as contributions (oral or poster) presented at national and international conferences, and by the presence in the mass media. In this context, the scientific monitoring is a key element of LTER research, including not only data collection (basic monitoring), but also data interpretation, modeling, and experimental manipulation, with particular attention to key groups of selected variables in order to identify the most significant environmental stressors and the degree of change at the level of ecosystems, communities, species and populations.
118. 8. Lanzarote and Chinijo Islands: an anchialine UNESCO Global Geopark; in Lanzarote and Chinijo Islands Geoparque: From Earth to Space
- Author
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Martínez, Alejandro, García-Gómez, Guillermo, García-Herrero, Álvaro, Di Cesare, Andrea, Corno, Gianluca, Eckert, Ester M., and Fontaneto, Diego
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14. Life underwater ,15. Life on land - Abstract
The Lanzarote and Chinijo Islands UNESCO Global Geopark hosts one of the most extensive and diverse volcanic anchialine ecosystems in the world, consisting of water bodies with marine origin that penetrated inland through coastal crevicular systems. Marine infiltration is facilitated by the low rainfall and the permeability of the coastal terrains. Best known for Túnel de la Atlántida, Lanzarote has other types of anchialine habitats, such as pools, lakes, and even hand-made wells, all of them interconnected with the crevicular system. So far, 39 endemic stygobitic species of crustacean, annelids, and platyhelminths have been described in the island. Some of them belong to lineages previously interpreted as Tethyan vicariant relicts because they belong in ancient groups restricted to caves situated in areas along the coastline of the ancient Tethys Sea, such as Mexico, Bahamas or Western Australia. Others, instead, have clear affinities with deep-sea groups, suggesting that their ancestors might have dispersed into the island from surrounding deep-sea environments. In overall, while the anchialine habitats of Lanzarote are relatively small in comparison to other regions, the presence of so many species with such a diverse origin have puzzled zoologists and biogeographers throughout the 20th century, who have regarded the island as a model to understand the origin and evolution of similar groups in other areas of the world. The anchialine habitats in Lanzarote are subject to intense recreational use and the island itself is a major touristic destination. However, geologist and biologist working in the local government offices, as well as in UNESCO Global Geopark and Biosphere Reserve Institutions collaborate with the touristic centers and several scientist around the world with in order to implemente novel conservation policies based on the results of state-of-art research. This strategy will ensure not only a better understanding of the anchialine ecosystems in the island in the near future, but also its long term preservation.
119. 8. Lanzarote and Chinijo Islands: an anchialine UNESCO Global Geopark; in Lanzarote and Chinijo Islands Geoparque: From Earth to Space
- Author
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Martínez, Alejandro, García-Gómez, Guillermo, García-Herrero, Álvaro, Di Cesare, Andrea, Corno, Gianluca, Eckert, Ester M., and Fontaneto, Diego
- Subjects
14. Life underwater ,15. Life on land - Abstract
The Lanzarote and Chinijo Islands UNESCO Global Geopark hosts one of the most extensive and diverse volcanic anchialine ecosystems in the world, consisting of water bodies with marine origin that penetrated inland through coastal crevicular systems. Marine infiltration is facilitated by the low rainfall and the permeability of the coastal terrains. Best known for Túnel de la Atlántida, Lanzarote has other types of anchialine habitats, such as pools, lakes, and even hand-made wells, all of them interconnected with the crevicular system. So far, 39 endemic stygobitic species of crustacean, annelids, and platyhelminths have been described in the island. Some of them belong to lineages previously interpreted as Tethyan vicariant relicts because they belong in ancient groups restricted to caves situated in areas along the coastline of the ancient Tethys Sea, such as Mexico, Bahamas or Western Australia. Others, instead, have clear affinities with deep-sea groups, suggesting that their ancestors might have dispersed into the island from surrounding deep-sea environments. In overall, while the anchialine habitats of Lanzarote are relatively small in comparison to other regions, the presence of so many species with such a diverse origin have puzzled zoologists and biogeographers throughout the 20th century, who have regarded the island as a model to understand the origin and evolution of similar groups in other areas of the world. The anchialine habitats in Lanzarote are subject to intense recreational use and the island itself is a major touristic destination. However, geologist and biologist working in the local government offices, as well as in UNESCO Global Geopark and Biosphere Reserve Institutions collaborate with the touristic centers and several scientist around the world with in order to implemente novel conservation policies based on the results of state-of-art research. This strategy will ensure not only a better understanding of the anchialine ecosystems in the island in the near future, but also its long term preservation.
120. A global multinational survey of cefotaxime-resistant coliforms in urban wastewater treatment plants
- Author
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Marano, Roberto B.M., Fernandes, Telma, Manaia, C��lia M., Nunes, Olga, Morrison, Donald, Berendonk, Thomas U., Kreuzinger, Norbert, Telson, Tanel, Corno, Gianluca, Fatta-Kassinos, Despo, Merlin, Christophe, Topp, Edward, Jurkevitch, Edouard, Henn, Leonie, Scott, Andrew, He��, Stefanie, Slipko, Katarzyna, Laht, Mailis, Kisand, Veljo, Di Cesare, Andrea, Karaolia, Popi, Michael, Stella G., Petre, Alice L., Rosal, Roberto, Pruden, Amy, Riquelme, Virginia, Ag��era, Ana, Esteban, Belen, Luczkiewicz, Aneta, Kalinowska, Agnieszka, Leonard, Anne, Gaze, William H., Adegoke, Anthony A., Stenstrom, Thor A., Pollice, Alfieri, Salerno, Carlo, Schwermer, Carsten U., Krzeminski, Pawel, Guilloteau, H��l��ne, Donner, Erica, Drigo, Barbara, Libralato, Giovanni, Guida, Marco, B��rgmann, Helmut, Beck, Karin, Garelick, Hemda, Tac��o, Marta, Henriques, Isabel, Mart��nez-Alcal��, Isabel, Guill��n-Navarro, Jose M., Popowska, Magdalena, Piotrowska, Marta, Quintela-Baluja, Marcos, Bunce, Joshua T., Polo-L��pez, Maria I., Nahim���Granados, Samira, Pons, Marie-No��lle, Milakovic, Milena, Udikovic-Kolic, Nikolina, Ory, J��r��me, Ousmane, Traore, Caballero, Pilar, Oliver, Antoni, Rodriguez-Mozaz, Sara, Balcazar, Jose L., J��ger, Thomas, Schwartz, Thomas, Yang, Ying, Zou, Shichun, Lee, Yunho, Yoon, Younggun, Herzog, Bastian, Mayrhofer, Heidrun, Prakash, Om, Nimonkar, Yogesh, Heath, Ester, Baraniak, Anna, Abreu-Silva, Joana, Choudhury, Manika, Munoz, Leonardo P., Krizanovic, Stela, Brunetti, Gianluca, Maile-Moskowitz, Ayella, Brown, Connor, and Cytryn, Eddie
- Subjects
6. Clean water ,3. Good health - Abstract
The World Health Organization Global Action Plan recommends integrated surveillance programs as crucial strategies for monitoring antibiotic resistance. Although several national surveillance programs are in place for clinical and veterinary settings, no such schemes exist for monitoring antibiotic-resistant bacteria in the environment. In this transnational study, we developed, validated, and tested a low-cost surveillance and easy to implement approach to evaluate antibiotic resistance in wastewater treatment plants (WWTPs) by targeting cefotaxime-resistant (CTX-R) coliforms as indicators. The rationale for this approach was: i) coliform quantification methods are internationally accepted as indicators of fecal contamination in recreational waters and are therefore routinely applied in analytical labs; ii) CTX-R coliforms are clinically relevant, associated with extended-spectrum ��-lactamases (ESBLs), and are rare in pristine environments. We analyzed 57 WWTPs in 22 countries across Europe, Asia, Africa, Australia, and North America. CTX-R coliforms were ubiquitous in raw sewage and their relative abundance varied significantly (
121. IT08-A Laghi Sudalpini
- Author
-
Salmaso, Nico, Bresciani, Mariano, Buzzi, Fabio, Ciampittiello, Marzia, Leoni, Barbara, Piscia, Roberta, Rogora, Michela, Austoni, Martina, Beltrami, Monica, Bertoni, Roberto, Boggero, Angela, Boscaini, Adriano, Brivio, Pietro Alessandro, Callieri, Cristiana, Cerutti, Igor, Cappelletti, Cristina, Carrara, Paola, Cerasino, Leonardo, Ciutti, Francesca, Corno, Gianluca, Crippa, Evelina, Di Cesare, Andrea, Dresti, Claudia, Eckert, Ester, Foglini, Claudio, Fontaneto, Diego, Galafassi, Silvia, Giacomotti, Paola, Giardino, Claudia, Guilizzoni, Piero, Iaia, Mattia, Lami, Andrea, Lella, Simone, Manca, Dario, Manca, Marina, Marchetto, Aldo, Mosello, Rosario, Musanti, Mauro, Nava, Veronica, Oggioni, Alessandro, Orrù, Arianna, Patelli, Martina, Riccardi, Nicoletta, Saidi, Helmi, Sala, Paolo, Soler, Valentina, Tartari, Gabriele A., Tolotti, Monica, Volta, Pietro, and Zaupa, Silvia
- Subjects
Biological communities and trophic networks ,13. Climate action ,LTER-Italy ,Ecological quality ,Climate change ,Paleolymnology ,Biodiversity ,LTER ,Eutrophication ,Remote sensing ,Ecotoxicology - Abstract
The Macrosite "IT08 Subalpine Lakes" includes a group of lakes located at the southern border of the Alps. The lake typologies are represented by large and deep lakes (Orta, Garda, Maggiore, Como and Iseo) and by a lake of smaller size and shallow depth (Candia). Topics common to all the research sites include the impact of eutrophication and climate change, the composition, structure and dynamics of biological communities (plankton, necton and littoral communities), trophic webs, paleolimnology, ecotoxicology, ecological status and remote sensing. Scientific investigations are supported by a wide availability of technological infrastructures and laboratories located in the reference institutions, and by a wide range of technological equipment for fieldwork. These facilities, funded within the individual institutes involved in the research, have allowed not only to maintain, but also to update the classical approaches used in scientific monitoring, while opening up new research fields (especially molecular ecology, microbial ecology, metabolomic profiling, antibiotic resistance genes, high frequency monitoring by sensor technology). Over the last decade, the continuity and regularity of investigations have been facilitated by the availability of both external and ordinary funds. The variety of research activities carried out on the IT08 macrosite is evidenced by the publication of numerous scientific papers, as well as contributions (oral or poster) presented at national and international conferences, and by the presence in the mass media. In this context, the scientific monitoring is a key element of LTER research, including not only data collection (basic monitoring), but also data interpretation, modeling, and experimental manipulation, with particular attention to key groups of selected variables in order to identify the most significant environmental stressors and the degree of change at the level of ecosystems, communities, species and populations.
122. Seasonality of the antibiotic resistance gene blaCTX-M in temperate Lake Maggiore
- Author
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Cristiana Callieri, Jakob Pernthaler, Roberto Bertoni, Lala-Sakina Malki, Jörg Villiger, Ester M. Eckert, Andrea Di Cesare, Gianluca Corno, University of Zurich, and Di Cesare, Andrea
- Subjects
0106 biological sciences ,antibiotic resistance ,Cefotaxime ,Zoology ,580 Plants (Botany) ,Aquatic Science ,010603 evolutionary biology ,01 natural sciences ,10126 Department of Plant and Microbial Biology ,Abundance (ecology) ,medicine ,10211 Zurich-Basel Plant Science Center ,lake ,Gene ,General Environmental Science ,biology ,Resistance (ecology) ,1104 Aquatic Science ,010604 marine biology & hydrobiology ,Pelagic zone ,biochemical phenomena, metabolism, and nutrition ,Seasonality ,biology.organism_classification ,medicine.disease ,Pollution ,sediment ,Microbial population biology ,Bacteria ,medicine.drug - Abstract
The beta lactamase gene blaCTX-M, responsible of the resistance to cephalosporins, has been detected in microbes from hospitals to open waters. We studied the seasonality and stability of blaCTX-M in Lake Maggiore over 3 years and the role of potential inputs of allochthonous bacteria and/or antibiotic pollution in promoting its occurrence. blaCTX-M was mainly present from January to July in the pelagic microbial community and the gene occurrence was significantly related to low water temperature. To evaluate its temporal stability in the bacterial community over a short period, we measured blaCTX-M daily over the course of 6 days. The gene was below the limit of quantification except for one sampling when its abundance peaked, suggesting a point contamination. The bacterial community of the lake in which blaCTX-M was detected suggests that at least two distinct bacterial populations contained the gene. The occurrence of known blaCTX-M containing genera and the occurrence of the gene, however, did not overlap. Furthermore, the experimental addition of cefotaxime to lake water incubations did not promote abundance of the gene. These data imply that blaCTX-M was present in the environmental microbial community. Increases of gene abundances were likely caused by environmental parameters other than antibiotic contamination.
- Published
- 2019
123. A Metabarcoding Protocol to Analyze Coastal Planktic Communities Collected by Desalination Plant Filters: From Sampling to Bioinformatic Exploratory Analyses.
- Author
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Cecchetto M, Di Cesare A, Eckert E, Moro I, Fontaneto D, and Schiaparelli S
- Subjects
- DNA Barcoding, Taxonomic methods, Filtration, Computational Biology, Plants genetics
- Abstract
The temporal dynamics of coastal planktic communities can be disclosed through DNA metabarcoding on the filters of reverse-osmosis desalination plants. Here, we describe the steps that are necessary to process the filters in order to create the subsamples used for DNA extraction and the bioinformatic pipeline to perform the first exploratory analyses on this kind of dataset., (© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
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