301. Molecular serotype-specific identification of Streptococcus pneumoniae using loop-mediated isothermal amplification
- Author
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Daisuke Omagari, Mari Sasano, Chika Takano, Mitsuko Seki, Makoto Ohnishi, Yoko Kuramochi, Dong Wook Kim, Tomonori Hoshino, Eun Jin Kim, Kazumasa Fuwa, Paul E. Kilgore, Bin Chang, and Satoshi Hayakawa
- Subjects
DNA, Bacterial ,Male ,0301 basic medicine ,Serotype ,030106 microbiology ,Loop-mediated isothermal amplification ,lcsh:Medicine ,Biology ,Serogroup ,medicine.disease_cause ,Sensitivity and Specificity ,Article ,Pneumococcal conjugate vaccine ,Bacterial genetics ,Haemophilus influenzae ,03 medical and health sciences ,0302 clinical medicine ,Streptococcus pneumoniae ,medicine ,Humans ,Meningitis ,030212 general & internal medicine ,Serotyping ,lcsh:Science ,Bacterial Capsules ,Multidisciplinary ,Base Sequence ,lcsh:R ,Infant ,Pneumonia, Pneumococcal ,medicine.disease ,Virology ,Child, Preschool ,lcsh:Q ,Female ,Bacterial infection ,Nucleic Acid Amplification Techniques ,Specific identification ,medicine.drug - Abstract
In children, the incidence of pneumococcal meningitis has decreased since the introduction of pneumococcal conjugate vaccine (PCV7 and PCV13). However, since the introduction of the vaccine, developed countries have seen the emergence of non-PCV13 serotypes. However, invasive pneumococcal disease (IPD) caused by PCV13-targeted serotypes still represents an important public health problem in resource-limited countries. To develop a rapid, simple, and cost-effective assay to detect serotypes of Streptococcus pneumoniae, we developed a novel loop-mediated isothermal amplification (LAMP) assay based on the sequences available for the 13 capsular types that are included in PCV13: 1, 3, 4, 5, 6 A, 6B, 7 F, 9 V, 14, 18 C, 19 A, 19 F, and 23 F. We evaluated test reactivity, specificity, sensitivity and performance, and compared the results between established LAMP and conventional PCR assays. To support its clinical use, the detection limits of the LAMP assay were evaluated using bacterial genomic DNA-spiked cerebrospinal fluid (CSF) and blood specimens. We confirmed the specificity of the LAMP assay using 41 serotypes of pneumococcal strains. The sensitivity of the LAMP assay was 10 to 100 copies per reaction, compared to 10 to 104 copies per reaction for PCR assays. The detection limits of the LAMP assay were comparable when using DNA-spiked CSF and blood specimens, as compared to using purified DNA as the template. In conclusion, a rapid and simple LAMP-based pneumococcal serotyping method has been developed. This is the first report of a LAMP method for a PCV13 serotype-specific identification assay, which could be a promising step to facilitate epidemiological studies of pneumococcal serotyping.
- Published
- 2019