289 results on '"Xian Jin Xie"'
Search Results
252. Prospective evaluation of plasma levels of ANGPT2, TuM2PK, and VEGF in patients with renal cell carcinoma.
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Gayed, Bishoy A., Gillen, Jessica, Christie, Alana, Peña-Llopis, Samuel, Xian-Jin Xie, Jingsheng Yan, Karam, Jose A., Raj, Ganesh, Sagalowsky, Arthur I., Lotan, Yair, Margulis, Vitaly, Brugarolas, James, Xie, Xian-Jin, and Yan, Jingsheng
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PHOSPHOTRANSFERASES ,PYRUVATE kinase ,HUMAN growth hormone ,CYTOKINES ,MUCINOUS adenocarcinoma ,COMPARATIVE studies ,LONGITUDINAL method ,KIDNEY tumors ,RESEARCH methodology ,MEDICAL cooperation ,PROTEINS ,RENAL cell carcinoma ,RESEARCH ,RESEARCH evaluation ,TRANSFERASES ,EVALUATION research ,VASCULAR endothelial growth factors ,TREATMENT effectiveness ,DIAGNOSIS ,SURGERY - Abstract
Background: To assess pathological correlations and temporal trends of Angiopoietin-2 (ANGPT2), vascular endothelial growth factor (VEGF) and M2 Pyruvate kinase (TuM2PK), markers of tumor vascular development and metabolism, in patients with renal cell carcinoma (RCC).Methods: We prospectively collected plasma samples from 89 patients who underwent surgical/ablative therapy for RCC and 38 patients with benign disease (nephrolithiasis, hematuria without apparent neoplastic origin, or renal cysts). In RCC patients, marker levels were compared between at least 1 preoperative and 1 postoperative time point generally 3 weeks after surgery. Marker temporal trends were assessed using the Wilcoxon sign-rank test. Plasma VEGF, ANGPT2, and TuM2PK levels were determined by ELISA and tested for association with pathological variables.Results: Median age was comparable between groups. 83/89 (93%) of the cohort underwent surgical extirpation. 82% of the tumors were organ confined (T ≤ 2, N0). Only ANGPT2 exhibited significantly elevated preoperative levels in patients with RCC compared to benign disease (p = 0.046). Elevated preoperative levels of ANGPT2 and TuM2PK significantly correlated with increased tumor size and advanced grade (p < 0.05). Chromophobe RCC exhibited higher levels of ANGPT2 compared to other histologies (p < 0.05). A decline in marker level after surgery was not observed, likely due to the timing of the analyses.Conclusion: Our results suggest that ANGPT2 is a marker of RCC. Additionally, ANGPT2 and TuM2PK significantly correlated with several adverse pathological features. Further studies are needed to determine clinical applicability. [ABSTRACT FROM AUTHOR]- Published
- 2015
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253. On multiple testing, validation of gene expression profiling, and translational research
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Xian Jin Xie
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Gene expression profiling ,Multiple comparisons problem ,Translational research ,General Medicine ,Computational biology ,Biology - Published
- 2008
254. The functional MDM2 SNP309 polymorphism is associated with an earlier age of diagnosis in women with lung cancer
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John D. Minna, Xian Jin Xie, Gail E. Tomlinson, Joan H. Schiller, and Sophie Sun
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Cancer Research ,biology ,business.industry ,Mdm2 snp309 ,Single-nucleotide polymorphism ,medicine.disease ,Negative regulator ,Mdm2 Protein ,Oncology ,Ubiquitin ,P53 protein ,biology.protein ,Cancer research ,Medicine ,business ,Lung cancer - Abstract
10550 Background: MDM2 protein is a key negative regulator of p53 protein by targeting its destruction through the ubiquitin pathway. A single nucleotide polymorphism (SNP309 T→G) has been identified in the promoter of the MDM2 gene which results in higher levels of MDM2 protein, attenuation of the p53 pathway, and enhanced tumorigenesis. Estrogen signaling has also been shown to upregulate MDM2 expression. Recent studies have suggested that the MDM2 SNP309 polymorphism is associated with earlier age of onset of certain cancers, particularly in women. The purpose of this study was to determine whether the MDM2 SNP309 polymorphism is associated with lung cancer risk in a gender specific manner. Methods: MDM2 genotype analysis was performed on a cohort of 115 consecutive Caucasian patients with histologically confirmed lung cancer using a PCR-based nucleotide polymorphism discrimination test. Allele status was described as homozygous wild-type (TT), homozygous variant (GG) and heterozygous variant/wild-type (TG). Results: In total, 46 female and 69 male lung cancer patients were screened for the MDM2 SNP309 polymorphism ( Table 1 ). Females with the GG genotype were diagnosed at a significantly earlier age as compared to females with the TT genotype (p=0.038), while a similar comparison for males showed no significant difference. A trend towards an earlier age of onset in females as compared to males with the GG genotype was observed, although the sample size was small and this was not significant (p=0.47). Conclusions: In this study, we found that women, but not men, with the MDM2 SNP309 GG genotype were particularly susceptible to the development of lung cancer at an earlier age, supporting the hypothesis that the expression of this polymorphism is gender-specific and possibly regulated by estrogen. Women with the MDM2 polymorphism represent a potential high-risk group for the focus of lung cancer screening and chemoprevention efforts with anti-estrogen therapy. [Table: see text] No significant financial relationships to disclose.
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- 2007
255. Blood oxygen level dependent (BOLD) contrast MRI and breast cancer chemotherapy response
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Debu Tripathy, Xian Jin Xie, L. Ding, Paul T. Weatherall, Lan Jiang, Roderick W McColl, Michael D. Story, Ralph P. Mason, and N. Rao
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Cancer Research ,Pathology ,medicine.medical_specialty ,Blood-oxygen-level dependent ,business.industry ,medicine.medical_treatment ,media_common.quotation_subject ,Tumor microcirculation ,Oxygenation ,Breast cancer chemotherapy ,Oncology ,In vivo ,medicine ,Cytotoxic T cell ,Contrast (vision) ,Tumor growth ,business ,media_common - Abstract
10514 Background: Tumor microcirculation and oxygenation play critical roles in tumor growth and response to cytotoxic treatment. Assessing these parameters in vivo may provide a useful tool for evaluating therapy in real time. Deoxyhemoglobin (dHbO2) can serve as an endogenous contrast agent causing signal loss in echo planar MR images. Tumor characteristics or interventions affecting tumor oxygenation, which convert dHbO2 to HbO2 produce a BOLD signal gain, may complement conventional MRI. Material and Methods: Ten patients with locally advanced breast cancer received doxorubicin and cyclophosphamide (AC) for four cycles every 2 or 3 weeks followed by paclitaxel for 4 cycles. Prior to chemotherapy and after 1 and 4 cycles of AC, MRI was performed on a 1.5 T scanner. For the BOLD study, patients breathed room air (RA) for 45 sec, then oxygen for 6 min and finally RA again. The BOLD imaging an Echo Planar technique with TR/TE (500/41.4 ms) 256 matrix and 20cm field of view. This was followed by dynamic contrast enhanced (DCE) MRI study. Pre and 1 to 4 day post-treatment tumor biopsies for hypoxia response proteins by immunohistochemistry and global RNA by gene array expression analysis (Illumina platform) were obtained. Results: MRI showed mild BOLD contrast enhancing regions in all evaluable patients with a typical signal enhancement of ∼2%. All 3 patients with an initial high BOLD-effect (>7%) achieved a pathological response after chemotherapy compared to 4 who did not (p < 0.03). The MRI-DCE tumor response signal decreased with chemotherapy, but no correlation with pathological response was seen. No clear difference in hypoxia-induced proteins (eg. HIF1-alpha, VEGF, CAIX) was seen according to pathological response or BOLD. Distinct gene expression patterns at baseline and after therapy emerged depending on BOLD response involving development, apoptosis and cell cycle pathways. Discussion: BOLD MRI can provide a non-invasive, easily repeatable in vivo approach to assess breast tumor physiology and its sensitivity to hypoxia (vascular oxygenation) may add value by measuring hypoxia and predicting response to therapy. BOLD MRI appears promising to select ideal candidates for hypoxia targeting with anti-angiogenic agents combined with chemotherapy and such studies are under way. No significant financial relationships to disclose.
- Published
- 2006
256. Bap1 is essential for kidney function and with Vhl in renal tumorigenesis.
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Shan-Shan Wang, Yi-Feng Gu, Wolff, Nicholas, Stefanius, Karoliina, Christie, Alana, Dey, Anwesha, Hammer, Robert E., Xian-Jin Xie, Rakheja, Dinesh, Pedrosa, Ivan, Carroll, Thomas, McKay, Renée M., Kapur, Payal, and Brugarolas, James
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KIDNEY disease diagnosis ,RENAL cell carcinoma ,BRCA genes ,VON Hippel-Lindau disease ,TUMOR suppressor genes ,PROGENITOR cells ,NEPHRONS - Abstract
Why different species are predisposed to different tumor spectra is not well understood. In particular, whether the physical location of tumor suppressor genes relative to one another influences tumor predisposition is unknown. Renal cancer presents a unique opportunity to explore this question. Renal cell carcinoma (RCC) of clear-cell type (ccRCC), the most common type, begins with an intragenic mutation in the von Hippel-Lindau (VHL) gene and loss of 3p (where VHL is located). Chromosome 3p harbors several additional tumor suppressor genes, including BRCA1-associated protein-1 (BAP1). In the mouse, Vhl is on a different chromosome than Bap1. Thus, whereas loss of 3p in humans simultaneously deletes one copy of BAP1, loss of heterozygosity in the corresponding Vhl region in the mouse would not affect Bap1. To test the role of BAP1 in ccRCC development, we generated mice deficient for either Vhl or Vhl together with one allele of Bap1 in nephron progenitor cells. Six2-Cre;Vh
F/F ;BapF/+ mice developed ccRCC, but Six2-Cre;VhF/F mice did not. Kidneys from Six2-Cre;VhF/F ;BapF/+ mice resembled kidneys from humans with VHL syndrome, containing multiple lesions spanning from benign cysts to cystic and solid RCC. Although the tumors were small, they showed nuclear atypia and exhibited features of human ccRCC. These results provide an explanation for why VHL heterozygous humans, but not mice, develop ccRCC. They also explain why a mouse model of ccRCC has been lacking. More broadly, our data suggest that differences in tumor predisposition across species may be explained, at least in part, by differences in the location of two-hit tumor suppressor genes across the genome. [ABSTRACT FROM AUTHOR]- Published
- 2014
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257. Aspirin improves outcome in high risk prostate cancer patients treated with radiation therapy.
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Jacobs, Corbin D., Chun, Stephen G., Jingsheng Yan, Xian-Jin Xie, Pistenmaa, David A., Hannan, Raquibul, Lotan, Yair, Roehrborn, Claus G., Choe, Kevin S., and Kim, D. W. Nathan
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- 2014
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258. Identification and Characterization of a Suite of Tumor Targeting Peptides for Non-Small Cell Lung Cancer.
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McGuire, Michael J., Gray, Bethany Powell, Shunzi Li, Cupka, Dorothy, Byers, Lauren Averett, Wu, Lei, Rezaie, Shaghayegh, Ying-Horng Liu, Pattisapu, Naveen, Issac, James, Tsukasa Oyama, Lixia Diao, Heymach, John V., Xian-Jin Xie, Minna, John D., and Brown, Kathlynn C.
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LIGANDS (Biochemistry) ,PEPTIDES ,LUNG cancer ,CELL lines ,EPITHELIAL cells ,TUMORS ,PATIENTS ,THERAPEUTICS - Abstract
Tumor targeting ligands are emerging components in cancer therapies. Widespread use of targeted therapies and molecular imaging is dependent on increasing the number of high affinity, tumor-specific ligands. Towards this goal, we biopanned three phage-displayed peptide libraries on a series of well-defined human non-small cell lung cancer (NSCLC) cell lines, isolating 11 novel peptides. The peptides show distinct binding profiles across 40 NSCLC cell lines and do not bind normal bronchial epithelial cell lines. Binding of specific peptides correlates with onco-genotypes and activation of particular pathways, such as EGFR signaling, suggesting the peptides may serve as surrogate markers. Multimerization of the peptides results in cell binding affinities between 0.0071-40 nM. The peptides home to tumors in vivo and bind to patient tumor samples. This is the first comprehensive biopanning for isolation of high affinity peptidic ligands for a single cancer type and expands the diversity of NSCLC targeting ligands. [ABSTRACT FROM AUTHOR]
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- 2014
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259. Diet variety is associated with adequacy ofnutrient intake in community-dwelling, rural elderly
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Phyllis J. Stumbo, Teresa A. Marshall, John J. Warren, and Xian-Jin Xie
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Nutrition and Dietetics ,business.industry ,Environmental health ,Medicine ,business ,Food Science ,Variety (cybernetics) - Published
- 2001
260. A high-throughput screen identifies miRNA inhibitors regulating lung cancer cell survival and response to paclitaxel.
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Liqin Du, Borkowski, Robert, Zhenze Zhao, Xiuye Ma, Xiaojie Yu, Xian-Jin Xie, and Pertsemlidis, Alexander
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- 2013
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261. A Validated Tumorgraft Model Reveals Activity of Dovitinib Against Renal Cell Carcinoma.
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Sivanand, Sharanya, Peña-Llopis, Samuel, Hong Zhao, Kucejova, Blanka, Spence, Patrick, Pavia-Jimenez, Andrea, Yamasaki, Toshinari, McBride, David J., Gillen, Jessica, Wolff, Nicholas C., Morlock, Lorraine, Lotan, Yair, Raj, Ganesh V., Sagalowsky, Arthur, Margulis, Vitaly, Cadeddu, Jeffrey A., Ross, Mark T., Bentley, David R., Kabbani, Wareef, and Xian-Jin Xie
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- 2012
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262. Influence of Surgical Technique on Mastectomy and Reexcision Rates in Breast-Conserving Therapy for Cancer.
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Unzeitig, Alison, Kobbermann, Anne, Xian-Jin Xie, Jingsheng Yan, Euhus, David, Yan Peng, Sarode, Venetia, Moldrem, Amy, Marilyn Leitch, A., Andrews, Valerie, and Rao, Roshni
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Introduction. Breast conserving surgery (BCS) requires tumor excision with negative margins. Reexcision rates of 30-50% are reported. Ultrasound localization, intraoperative margin pathology, and specimen mammography have reduced reexcisions, but require new equipment. Cavity shave margin (CSM) is a technique, utilizing existing equipment, that potentially reduces reexcision. This study evaluates CSM reexcision impact. Methods. 522 cancers treated with BCS were reviewed. Patients underwent standard partial mastectomy (SPM) or CSM. Data collected included demographics, pathology, and treatments. Results. 455 SPMs were compared to 67 CSMs. Analysis revealed no differences in pathology, intraductal component, or neoadjuvant chemotherapy. Overall reexcision rate = 43%. Most reexcisions were performed for DCIS at margin. SPMs underwent 213 reexcisions (46.8%), versus 16/67 (23.9%) CSMs (P = 0.0003). Total mastectomy as definitive procedure was performed after more SPMs (P = 0.009). Multivariate analysis revealed CSM, % DCIS, tumor size, and race to influence reexcisions. Conclusions. CSM is a technique that reduces reexcisions and mastectomy rates [ABSTRACT FROM AUTHOR]
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- 2012
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263. Bootcamp During Neoadjuvant Chemotherapy for Breast Cancer: A Randomized Pilot Trial.
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Rao, Roshni, Cruz, Veronica, Yan Peng, Harker-Murray, Amy, Haley, Barbara B., Hong Zhao, Xian-Jin Xie, and Euhus, David
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ACADEMIC medical centers ,BIOMARKERS ,BREAST tumors ,COMBINED modality therapy ,EXERCISE ,IMMUNOHISTOCHEMISTRY ,LONGITUDINAL method ,GENETIC mutation ,HEALTH outcome assessment ,QUALITY of life ,RESEARCH funding ,STATISTICAL sampling ,T-test (Statistics) ,PILOT projects ,EQUIPMENT & supplies ,RANDOMIZED controlled trials ,TREATMENT effectiveness ,DATA analysis software - Abstract
Introduction: Exercise may improve cancer outcomes. Neoadjuvant chemotherapy (NC) for breast cancer provides a unique setting to evaluate intervention effects. Treatments leading to decreased post-neoadjuvant Ki-67 levels, smaller tumor size, and higher pathologic response are associated with improved survival and lower recurrence. This randomized, prospective pilot trial evaluates the feasibility of supervised exercise during NC for breast cancer. Methods: Stage II-III, ER positive, cancer patients with BMI > 25 receiving NC were randomized to standard NC with supervised bootcamp (NC + BC) or NC alone. Ki-67, C-peptide, BMI, and tumor size were measured before chemotherapy and at time of surgery. Results: There were no initial differences between groups in regards to tumor size, C-peptide, BMI, and Ki-67. The NC + BC (n = 5) group had a lower mean BMI at the conclusion of NC compared with those (n = 5) in the NC group (28.0 versus 35.8, P = 0.03). Final tumor size was 2.59 cm in the NC + BC group versus 3.16 cm for NC (P = 0.76) Mean Ki-67 for NC + BC was 7% versus 29% with NC (P = 0.14). C-peptide (ng/mL) was equivalent between the two groups (4.55 NC + BC versus 4.74 NC, P = 0.85). Conclusions: Adding a supervised exercise program to NC is feasible, decreases BMI, and may lead to lower Ki-67 levels and improved survival. [ABSTRACT FROM AUTHOR]
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- 2012
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264. Multipotent Capacity of Immortalized Human Bronchial Epithelial Cells.
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Delgado, Oliver, Kaisani, Aadil A., Spinola, Monica, Xian-Jin Xie, Batten, Kimberly G., Minna, John D., Wright, Woodring E., and Shay, Jerry W.
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MULTIPOTENTIALITY ,BRONCHI ,EPITHELIAL cells ,LABORATORY rats ,PROGENITOR cells ,HOMEOSTASIS ,MULTIPOTENT stem cells ,CELL differentiation ,LUNG cancer ,MAMMALS - Abstract
While the adult murine lung utilizes multiple compartmentally restricted progenitor cells during homeostasis and repair, much less is known about the progenitor cells from the human lung. Translating the murine stem cell model to humans is hindered by anatomical differences between species. Here we show that human bronchial epithelial cells (HBECs) display characteristics of multipotent stem cells of the lung. These HBECs express markers indicative of several epithelial types of the adult lung when experimentally tested in cell culture. When cultured in three different three-dimensional (3D) systems, subtle changes in the microenvironment result in unique responses including the ability of HBECs to differentiate into multiple central and peripheral lung cell types. These new findings indicate that the adult human lung contains a multipotent progenitor cell whose differentiation potential is primarily dictated by the microenvironment. The HBEC system is not only important in understanding mechanisms for specific cell lineage differentiation, but also for examining changes that correlate with human lung diseases including lung cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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265. Upregulation of TRAG3 gene in urothelial carcinoma of the bladder.
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Karam, Jose A., Huang, Sandra, Jinhai Fan, Stanfield, Jennifer, Schultz, Roger A., Rey-Chen Pong, Xiankai Sun, Mason, Ralph P., Xian-Jin Xie, Gang Niu, Xiaoyuan Chen, Frenkel, Eugene P., Sagalowsky, Arthur I., and Jer-Tsong Hsieh
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PACLITAXEL ,ANTINEOPLASTIC agents ,TRANSITIONAL cell carcinoma ,URINARY organ cancer ,LABORATORY mice - Abstract
The article discusses a study on the expression of taxol resistance-associated gene 3 (TRAG3) in urothelial carcinoma of the bladder (UCB). In the study, nude mice were used to grow T24-tumorigenic cell line which was monitored until the mice developed metastases. Stable sublines from primary bladder, lung and bone tissues were characterized through chromosal analysis and deoxyribonucleic acid (DNA) microarray. TRAG3 was found to be the most upregulated gene based on DNA microarray analysis.
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- 2011
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266. Bayesian credible intervals for monitoring liquid blending rates.
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Rahardja, Dewi, Zhao, Yan D., and Xian-Jin Xie
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BAYESIAN analysis ,CONFIDENCE intervals ,MONTE Carlo method ,RANDOM variables ,UNDERGROUND storage tanks - Abstract
We consider the problem of constructing confidence intervals (CIs) for the blending coefficient of different liquid, such as the blended underground storage tank (UST) leak data for compliance. For this problem, confidence intervals based on Fieller's Method have been proposed. This method utilizes a blending coefficient estimator which is a ratio of two correlated normal random variables. However, this method assumes normally distributed random errors in the UST leak model and therefore may be inappropriate for the UST leak data which typically have heavy-tailed empirical distributions. In this paper we develop a Bayesian approach assuming non-normal random errors with the Power Exponential Distribution (PED). A real-data example using Cary blended site data is given to illustrate both the Fieller's CIs and the Bayesian credible intervals. Monte Carlo simulations are conducted to compare the coverage probability and average width of CIs for both methods. For data with heavy-tailed distributions, the simulations show that both Fieller's and Bayesian intervals perform adequately in terms of coverage. However, Bayesian intervals perform better in terms of yielding CIs with shorter expected width. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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267. Loss of p15/Ink4b accompanies tumorigenesis triggered by complex DNA double-strand breaks.
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Camacho, Cristel V., Mukherjee, Bipasha, McEllin, Brian, Liang-Hao Ding, Burong Hu, Habib, Amyn A., Xian-Jin Xie, Nirodi, Chaitanya S., Saha, Debabrata, Story, Michael D., Balajee, Adayabalam S., Bachoo, Robert M., Boothman, David A., and Burma, Sandeep
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DNA ,CARCINOGENESIS ,TUMORS ,CANCER cells ,DNA repair - Abstract
DNA double-strand breaks (DSBs) are the most deleterious lesion inflicted by ionizing radiation. Although DSBs are potentially carcinogenic, it is not clear whether complex DSBs that are refractory to repair are more potently tumorigenic compared with simple breaks that can be rapidly repaired, correctly or incorrectly, by mammalian cells. We previously demonstrated that complex DSBs induced by high-linear energy transfer (LET) Fe ions are repaired slowly and incompletely, whereas those induced by low-LET gamma rays are repaired efficiently by mammalian cells. To determine whether Fe-induced DSBs are more potently tumorigenic than gamma ray-induced breaks, we irradiated ‘sensitized’ murine astrocytes that were deficient in Ink4a and Arf tumor suppressors and injected the surviving cells subcutaneously into nude mice. Using this model system, we find that Fe ions are potently tumorigenic, generating tumors with significantly higher frequency and shorter latency compared with tumors generated by gamma rays. Tumor formation by Fe-irradiated cells is accompanied by rampant genomic instability and multiple genomic changes, the most interesting of which is loss of the p15/Ink4b tumor suppressor due to deletion of a chromosomal region harboring the CDKN2A and CDKN2B loci. The additional loss of p15/Ink4b in tumors derived from cells that are already deficient in p16/Ink4a bolsters the hypothesis that p15 plays an important role in tumor suppression, especially in the absence of p16. Indeed, we find that reexpression of p15 in tumor-derived cells significantly attenuates the tumorigenic potential of these cells, indicating that p15 loss may be a critical event in tumorigenesis triggered by complex DSBs. [ABSTRACT FROM PUBLISHER]
- Published
- 2010
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268. Bayesian optimal discovery procedure for simultaneous significance testing.
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Jing Cao, Xian-Jin Xie, Song Zhang, Whitehurst, Angelique, and White, Michael A
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HIGH throughput screening (Drug development) , *SCIENTIFIC experimentation , *BAYESIAN analysis , *TESTING , *GENES - Abstract
Background: In high throughput screening, such as differential gene expression screening, drug sensitivity screening, and genome-wide RNAi screening, tens of thousands of tests need to be conducted simultaneously. However, the number of replicate measurements per test is extremely small, rarely exceeding 3. Several current approaches demonstrate that test statistics with shrinking variance estimates have more power over the traditional t statistic. Results: We propose a Bayesian hierarchical model to incorporate the shrinkage concept by introducing a mixture structure on variance components. The estimates from the Bayesian model are utilized in the optimal discovery procedure (ODP) proposed by Storey in 2007, which was shown to have optimal performance in multiple significance tests. We compared the performance of the Bayesian ODP with several competing test statistics. Conclusion: We have conducted simulation studies with 2 to 6 replicates per gene. We have also included test results from two real datasets. The Bayesian ODP outperforms the other methods in our study, including the original ODP. The advantage of the Bayesian ODP becomes more significant when there are few replicates per test. The improvement over the original ODP is based on the fact that Bayesian model borrows strength across genes in estimating unknown parameters. The proposed approach is efficient in computation due to the conjugate structure of the Bayesian model. The R code (see Additional file 1) to calculate the Bayesian ODP is provided. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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269. DNA Methylation in Benign Breast Epithelium in Relation to Age and Breast Cancer Risk.
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Euhus, David M., Dawei Bu, Milchgrub, Sara, Xian-Jin Xie, Aihua Bian, Leitch, A. Marilyn, and Lewis, Cheryl M.
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The article reports on the study which investigates the association of the tumor suppressor genes (TSG) methylation in benign breast epithelium and to breast cancer risk. The study conducted univariate, multivariate and unsupervised cluster analysis to establish relationship between TSG methylation and a personal history of breast cancer, predicted breast cancer risk and specific cancer risk factors. It is concluded that TSG methylation increases in benign breast epithelium with increasing age.
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- 2008
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270. Atypia and DNA Methylation in Nipple Duct Lavage in Relation to Predicted Breast Cancer Risk.
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Euhus, David M., Bu, Dawei, Ashfaq, Raheela, Xian-Jin Xie, Bian, Aihua, Leitch, A. Marilyn, and Lewis, Cheryl M.
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This article discusses findings of a study, which measured the prevalence of tumor suppressor gene (TSG) methylation in duct lavage samples. It also assessed the relationship between TSG methylation and cellularity, cytologic classification, and predicted breast cancer risk. One tool for breast cancer risk assessment is the Gail model. A proposed approach for individualized risk stratification is the assessment of biomarkers in breast epithelial cells.
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- 2007
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271. Synthetic lethal screen identification of chemosensitizer loci in cancer cells.
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Whitehurst, Angelique W., Bodemann, Brian O., Cardenas, Jessica, Ferguson, Deborah, Girard, Luc, Peyton, Michael, Minna, John D., Michnoff, Carolyn, Weihua Hao, Roth, Michael G., Xian-Jin Xie, and White, Michael A.
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CANCER cells ,MOLECULAR pathology ,CANCER ,APOPTOSIS ,RNA - Abstract
Abundant evidence suggests that a unifying principle governing the molecular pathology of cancer is the co-dependent aberrant regulation of core machinery driving proliferation and suppressing apoptosis. Anomalous proteins engaged in support of this tumorigenic regulatory environment most probably represent optimal intervention targets in a heterogeneous population of cancer cells. The advent of RNA-mediated interference (RNAi)-based functional genomics provides the opportunity to derive unbiased comprehensive collections of validated gene targets supporting critical biological systems outside the framework of preconceived notions of mechanistic relationships. We have combined a high-throughput cell-based one-well/one-gene screening platform with a genome-wide synthetic library of chemically synthesized small interfering RNAs for systematic interrogation of the molecular underpinnings of cancer cell chemoresponsiveness. NCI-H1155, a human non-small-cell lung cancer line, was employed in a paclitaxel-dependent synthetic lethal screen designed to identify gene targets that specifically reduce cell viability in the presence of otherwise sublethal concentrations of paclitaxel. Using a stringent objective statistical algorithm to reduce false discovery rates below 5%, we isolated a panel of 87 genes that represent major focal points of the autonomous response of cancer cells to the abrogation of microtubule dynamics. Here we show that several of these targets sensitize lung cancer cells to paclitaxel concentrations 1,000-fold lower than otherwise required for a significant response, and we identify mechanistic relationships between cancer-associated aberrant gene expression programmes and the basic cellular machinery required for robust mitotic progression. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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272. Role of Physical Activity in Modulating Breast Cancer Risk as Defined by APC and RASSF1A Promoter Hypermethylation in Nonmalignant Breast Tissue.
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Coyle, Yvonne M., Xian-Jin Xie, Lewis, Cheryl M., Dawei Bu, Milchgrub, Sara, and Euhus, David M.
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The article discusses a study on the role of physical activity in lowering the risk for breast cancer among women. The study aimed to explore the relationship of lifetime physical activity, physical activity over the past 5 years, physical activity within the past year with the promoter hypermethylation of tumor suppressor genes, APC and RASS1A in nonmalignant breast tissue. The results show that physical activity in the different periods have an inverse association with APC promoter hypermethylation status.
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- 2007
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273. Cost of Hospital Care for Elderly At Risk of Falling.
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Titler, Marita, Xian-Jin Xie, Dochterman, Joanne, Kanak, Mary, Picone, Debra M., Qiang Fei, and Everett, Linda
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MEDICAL care costs , *ACCIDENTAL falls in old age , *COST effectiveness , *HOSPITAL costs , *LENGTH of stay in hospitals , *OPERATING rooms , *INTENSIVE care units - Abstract
The article focuses on the cost of hospital care for the elderly at risk of falling. Falling can result in numerous adverse outcomes that may require additional health interference and increase hospital length of stay, thereby increasing cost of care. Some of the adverse outcomes caused by a fall include bone fractures, head injury, and injury to soft tissue. Cost-effectiveness analysis is a research method designed to determine which health interventions provide the most effective and affordable care. Total hospital costs included costs in the following categories: general services, intensive care units/special care, pharmacy, laboratory, radiology, operating room, supplies, and other ancillary services.
- Published
- 2005
274. Orexin Regulates Bone Remodeling via a Dominant Positive Central Action and a Subordinate Negative Peripheral Action
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Masashi Yanagisawa, Xian Jin Xie, Wei Wei, Jing Y. Krzeszinski, Yihong Wan, Toshiyuki Motoike, Zixue Jin, and Paul C. Dechow
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Leptin ,medicine.medical_specialty ,Bone density ,Physiology ,media_common.quotation_subject ,Mice, Obese ,Biology ,Article ,Bone remodeling ,Mice ,Bone Density ,Orexin Receptors ,Osteogenesis ,Internal medicine ,mental disorders ,medicine ,Animals ,RNA, Small Interfering ,Molecular Biology ,Cells, Cultured ,media_common ,Mice, Knockout ,Orexins ,Neuropeptides ,digestive, oral, and skin physiology ,Intracellular Signaling Peptides and Proteins ,Appetite ,Osteoblast ,Cell Differentiation ,Cell Biology ,Orexin receptor ,Ghrelin ,Orexin ,Mice, Inbred C57BL ,Endocrinology ,medicine.anatomical_structure ,nervous system ,RNA Interference ,Bone Remodeling ,psychological phenomena and processes ,hormones, hormone substitutes, and hormone antagonists - Abstract
Orexin neuropeptides promote arousal, appetite, reward, and energy expenditure. However, whether orexin affects bone mass accrual is unknown. Here we show that orexin functions centrally through orexin receptor 2 (OX2R) in the brain to enhance bone formation. OX2R-null mice exhibit low-bone-mass owing to elevated circulating leptin; whereas central administration of an OX2R-selective agonist augments bone mass. Conversely, orexin also functions peripherally through orexin receptor 1 (OX1R) in the bone to suppress bone formation. OX1R-null mice exhibit high-bone-mass owing to a mesenchymal stem cell differentiation shift from adipocyte to osteoblast that results from higher osseous ghrelin expression. The central action is dominant over the peripheral action because bone mass is reduced in orexin-null and OX1R2R-double-null mice but enhanced in orexin over-expressing transgenic mice. These findings reveal orexin as a critical rheostat of skeletal homeostasis that exerts a yin-yang dual regulation, and highlight orexin as a therapeutic target for osteoporosis.
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275. Prognostic Significance of Nodal Location in Stage IIIC Endometrial Carcinoma: Implications for Optimal Adjuvant Therapy
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Kevin Albuquerque, Jyoti Mayadev, Jayanthi S. Lea, David Miller, Alana Christie, Xian Jin Xie, Ahmed I Ghanem, Michael R. Folkert, Christa Nagel, Vanessa A Kennedy, N. Khan, and Mohamed A. Elshaikh
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Oncology ,Cancer Research ,medicine.medical_specialty ,Radiation ,business.industry ,medicine.disease ,Internal medicine ,Carcinoma ,medicine ,Adjuvant therapy ,Radiology, Nuclear Medicine and imaging ,Stage IIIC ,business ,NODAL
276. Bayesian optimal discovery procedure for simultaneous significance testing
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Angelique W. Whitehurst, Michael A. White, Xian Jin Xie, Jing Cao, and Song Zhang
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Databases, Factual ,Computer science ,Bayesian probability ,lcsh:Computer applications to medicine. Medical informatics ,Bayesian inference ,computer.software_genre ,01 natural sciences ,Biochemistry ,Pattern Recognition, Automated ,010104 statistics & probability ,03 medical and health sciences ,Bayes' theorem ,Structural Biology ,Humans ,Bayesian hierarchical modeling ,Computer Simulation ,0101 mathematics ,lcsh:QH301-705.5 ,Molecular Biology ,030304 developmental biology ,Statistical hypothesis testing ,t-statistic ,0303 health sciences ,Models, Statistical ,Models, Genetic ,Methodology Article ,Gene Expression Profiling ,Applied Mathematics ,Computational Biology ,Reproducibility of Results ,Bayes Theorem ,Variance (accounting) ,Models, Theoretical ,Data science ,Computer Science Applications ,ROC Curve ,lcsh:Biology (General) ,lcsh:R858-859.7 ,Programming Languages ,RNA Interference ,Data mining ,computer ,Algorithms - Abstract
Background In high throughput screening, such as differential gene expression screening, drug sensitivity screening, and genome-wide RNAi screening, tens of thousands of tests need to be conducted simultaneously. However, the number of replicate measurements per test is extremely small, rarely exceeding 3. Several current approaches demonstrate that test statistics with shrinking variance estimates have more power over the traditional t statistic. Results We propose a Bayesian hierarchical model to incorporate the shrinkage concept by introducing a mixture structure on variance components. The estimates from the Bayesian model are utilized in the optimal discovery procedure (ODP) proposed by Storey in 2007, which was shown to have optimal performance in multiple significance tests. We compared the performance of the Bayesian ODP with several competing test statistics. Conclusion We have conducted simulation studies with 2 to 6 replicates per gene. We have also included test results from two real datasets. The Bayesian ODP outperforms the other methods in our study, including the original ODP. The advantage of the Bayesian ODP becomes more significant when there are few replicates per test. The improvement over the original ODP is based on the fact that Bayesian model borrows strength across genes in estimating unknown parameters. The proposed approach is efficient in computation due to the conjugate structure of the Bayesian model. The R code (see Additional file 1) to calculate the Bayesian ODP is provided. Additional file 1 Bayesian ODP R code. This file contains the R code to calculate the posterior probability from the Bayesian model and the Bayesian ODP. Click here for file
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277. Cell-Type-Dependent Regulation of mTORC1 by REDD1 and the Tumor Suppressors TSC1/TSC2 and LKB1 in Response to Hypoxia.
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Wolff, Nicholas C., Vega-Rubin-de-Celis, Silvia, Xian-Jin Xie, Castrillon, Diego H., Kabbani, Wareef, and Brugarolas, James
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HYPOXEMIA ,TUMOR suppressor proteins ,GENETIC regulation ,LIVER cells ,PROTEIN kinases ,GENETICS - Abstract
mTORC1 is a critical regulator of cell growth that integrates multiple signals and is deregulated in cancer. We previously reported that mTORC1 regulation by hypoxia involves Redd1 and the Tsc1/Tsc2 complex. Here we show that Redd1 induction by hypoxia is tissue dependent and that hypoxia signals are relayed to mTORC1 through different pathways in a tissue-specific manner. In the liver, Redd1 induction is restricted to the centrilobular area, and in primary hepatocytes, mTORC1 inhibition by hypoxia is independent of Redd1. Furthermore, Tsc1/Tsc2 and Arnt (Hif-1β) are similarly dispensable. Hypoxia signaling in hepatocytes involves Lkb1, AMP-activated protein kinase (AMPK), and raptor. Differences in signal relay extend beyond hypoxia and involve AMPK signaling. AMPK activation (using 5-aminoimidazole-4-carboxamide riboside [AICAR]) induces raptor phosphorylation and inhibits mTORC1 in both mouse embryo fibroblasts (MEFs) and hepatocytes, but whereas mTORC1 inhibition is Tsc1/Tsc2 dependent in MEFs, it is independent in hepatocytes. In liver cells, raptor phosphorylation is essential for both AMPK and hypoxia signaling. Thus, context-specific signals are required for raptor phosphorylation-induced mTORC1 inhibition. Our data illustrate a heretofore unappreciated topological complexity in mTORC1 regulation. Interestingly, topological differences in mTORC1 regulation by the tumor suppressor proteins Lkb1 and Tsc1/Tsc2 may underlie their tissue specificity of tumor suppressor action. [ABSTRACT FROM AUTHOR]
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- 2011
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278. Cooperation and Antagonism among Cancer Genes: The Renal Cancer Paradigm.
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Peña-Llopis, Samuel, Christie, Alana, Xian-Jin Xie, and Brugarolas, James
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- *
GENETIC mutation , *CANCER genes , *TUMORS , *CANCER cells , *GENETICS - Abstract
It is poorly understood how driver mutations in cancer genes work together to promote tumor development. Renal cell carcinoma (RCC) offers a unique opportunity to study complex relationships among cancer genes. The four most commonly mutated genes in RCC of clear-cell type (the most common type) are two-hit tumor suppressor genes, and they cluster in a 43-Mb region on chromosome 3p that is deleted in approximately 90% of tumors: VHL (mutated in ∼80%), PBRM1 (∼50%), BAP1 (∼15%), and SETD2 (∼15%). Meta-analyses that we conducted show that mutations in PBRM1 and SETD2 co-occur in tumors at a frequency higher than expected by chance alone, indicating that these mutations may cooperate in tumorigenesis. In contrast, consistent with our previous results, mutations in PBRM1 and BAP1 tend to be mutually exclusive. Mutation exclusivity analyses (often confounded by lack of statistical power) raise the possibility of functional redundancy. However, mutation exclusivity may indicate negative genetic interactions, as proposed herein for PBRM1 and BAP1, and mutations in these genes define RCC with different pathologic features, gene expression profiles, and outcomes. Negative genetic interactions among cancer genes point toward broader context dependencies of cancer gene action beyond tissue dependencies. An enhanced understanding of cancer gene dependencies may help to unravel vulnerabilities that can be exploited therapeutically. [ABSTRACT FROM AUTHOR]
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- 2013
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279. Factors Attracting Pediatric Dentists to Associateship Agreements.
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Gratz, Kirstina, McKernan, Susan, Pendleton, Chandler, Xian Jin Xie, and Leary, Kecia
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COMMUNICATION , *CONFIDENCE intervals , *DECISION making , *DENTISTS' attitudes , *EXPERIENTIAL learning , *INCOME , *INTERNET , *MEDICAL office management , *MEDICAL practice , *PEDIATRIC dentistry , *RESEARCH , *SATISFACTION , *SEX distribution , *SURVEYS , *WORK , *WORK environment , *LOGISTIC regression analysis , *HUMAN services programs , *DESCRIPTIVE statistics , *ODDS ratio - Abstract
Purpose: To evaluate the satisfaction of pediatric dentists in associateship agreements. Associateship agreements were deemed satisfactory if a dentist would recommend the employment experience to a colleague. Methods: A web-based survey was administered to 6,587 pediatric dentists and pediatric dental residents in the United States in 2018. Attributes of associateships that affected dentists' decisions to join or leave a practice were examined with descriptive statistics. Logistic regression was used to identify significant associations between demographic characteristics and satisfaction with previous associateship agreements. Results: The survey had an adjusted response rate of 13.2 percent. A total of 405 respondents reported previous experience as an associate in a pediatric dental practice; 62.0 percent of these individuals recommended their previous associateship to a colleague. Males were significantly more likely to recommend their previous associateship than females (odds ratio=1.85, 95 percent confidence interval=1.16 to 2.95). Income was the most frequently selected attribute that attracted dentists to an associateship (51.1 percent); 34.6 percent identified practice treatment philosophy as a primary reason for leaving an associateship agreement. Conclusion: Nearly two-thirds of pediatric dentists who worked as an associate would recommend the experience to a colleague. Many dentists viewed these as positive career opportunities, even if the associateship did not culminate in buy-in or buy-out. [ABSTRACT FROM AUTHOR]
- Published
- 2020
280. Correction: SRC-2-mediated coactivation of anti-tumorigenic target genes suppresses MYC-induced liver cancer.
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Shruthy Suresh, Deniz Durakoglugil, Xiaorong Zhou, Bokai Zhu, Sarah A Comerford, Chao Xing, Xian-Jin Xie, Brian York, and Kathryn A O'Donnell
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Genetics ,QH426-470 - Abstract
[This corrects the article DOI: 10.1371/journal.pgen.1006650.].
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- 2018
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281. Prediction of Cancer Prevention: From Mammogram Screening to Identification of BRCA1/2 Mutation Carriers in Underserved Populations
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Linda S. Robinson, Ashley Hendrix, Xian-Jin Xie, Jingsheng Yan, Sara Pirzadeh-Miller, Mary Pritzlaff, Parker Read, Sarah Pass, David Euhus, and Theodora S. Ross
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Hereditary breast and ovarian cancer syndrome ,Population screening ,BRCA1/2 ,Genetic testing ,Underserved*** ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: The US Preventative Service Task Force recommends that physicians perform a genetic risk assessment to identify women at risk for BRCA1/2 mutations associated with hereditary breast and ovarian cancer (HBOC) syndrome. However, outcomes data after a diagnosis of HBOC syndrome especially in diverse populations, are minimal. Here we asked if genetic screening of high-risk underserved women identified in the mammogram population reduces cancer incidence. Methods: We evaluated 61,924 underserved women at screening mammography for family histories suggestive of HBOC syndrome over the course of 21 months. Data were collected retrospectively from patients at two safety net hospitals through chart review. A computer model was used to calculate the long-term effect of this screening on cancer incidence by assessing both the mutation detection rate and the completion of prophylactic surgeries in BRCA1/2 mutation carriers. Findings: We identified 20 of the 85 (23.5%) expected BRCA1/2 mutation carriers in the underserved population. The frequencies of prophylactic mastectomies and oophorectomies in the mutation carriers were 25% and 40%, respectively. Using these data, our model predicted only an 8.8% reduction in both breast and ovarian cancer in the underserved patients. This contrasts with a 57% reduction in breast cancer and 51% reduction in ovarian cancer in an insured reference population. Our data indicate that underserved patients with HBOC syndrome are difficult to identify and when identified are limited in their ability to adhere to NCCN guidelines for cancer prevention. Interpretation: Screening for women at risk for HBOC syndrome in mammogram populations will only prevent cancers if we can increase compliance with management guidelines. This study provides prototypic baseline data for step-wise analysis of the efficacy of the use of family history analysis in the mammography setting for detection and management of HBOC syndrome.
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- 2015
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282. Institutional Scientific Review of Cancer Clinical Research Protocols: A Unique Requirement That Affects Activation Timelines.
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Ning Ning, Jingsheng Yan, Dietrich, Martin F., Xian-Jin Xie, and Gerber, David E.
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- *
EVALUATION of clinical trials , *CHI-squared test , *FISHER exact test , *MEDICAL care , *RESEARCH protocols , *ONCOLOGY , *SCIENCE , *TIME , *TUMORS , *INSTITUTIONAL review boards , *DATA analysis software , *KRUSKAL-Wallis Test - Abstract
Purpose: The National Cancer Institute (NCI) requirement that clinical trials at NCI-designated cancer centers undergo institutional scientific review in addition to institutional review board evaluation is unique among medical specialties. We sought to evaluate the effect of this process on protocol activation timelines. Methods: We analyzed oncology clinical trials that underwent full board review by the Harold C. Simmons Comprehensive Cancer Center Protocol Review and Monitoring Committee (PRMC) from January 1, 2009, through June 30, 2013. We analyzed associations between trial characteristics, PRMC decisions, protocol modifications, and process timelines using the χ2 test, Fisher's exact test, Wilcoxon rank sum test, Kruskal-Wallis test, and logistic regression. Results: A total of 226 trials were analyzed. Of these, 77% were industry sponsored and 23% were investigator initiated. The median time from submission to PRMC approval was 55 days. The length of review was associated with trial phase, timing of approval, and number of committee changes/clarifications requested. The median process time was 35 days for those approved at first decision, 68 days for second decision, and 116 days for third decision (P < .001). The median process time was 39 days if no changes/clarifications were requested, 64 days for one to three changes/clarifications, and 73 days for four or more changes/clarifications (P < .001). Requested changes/clarifications had a greater effect on industry-sponsored trials than on investigator-initiated trials. Conclusion: NCI-mandated institutional scientific review of oncology clinical trials contributes substantially to protocol activation timelines. Further evaluation of this process and the value added to research quality is warranted. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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283. SRC-2-mediated coactivation of anti-tumorigenic target genes suppresses MYC-induced liver cancer.
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Shruthy Suresh, Deniz Durakoglugil, Xiaorong Zhou, Bokai Zhu, Sarah A Comerford, Chao Xing, Xian-Jin Xie, Brian York, and Kathryn A O'Donnell
- Subjects
Genetics ,QH426-470 - Abstract
Hepatocellular carcinoma (HCC) is the fifth most common solid tumor in the world and the third leading cause of cancer-associated deaths. A Sleeping Beauty-mediated transposon mutagenesis screen previously identified mutations that cooperate with MYC to accelerate liver tumorigenesis. This revealed a tumor suppressor role for Steroid Receptor Coactivator 2/Nuclear Receptor Coactivator 2 (Src-2/Ncoa2) in liver cancer. In contrast, SRC-2 promotes survival and metastasis in prostate cancer cells, suggesting a tissue-specific and context-dependent role for SRC-2 in tumorigenesis. To determine if genetic loss of SRC-2 is sufficient to accelerate MYC-mediated liver tumorigenesis, we bred Src-2-/- mice with a MYC-induced liver tumor model and observed a significant increase in liver tumor burden. RNA sequencing of liver tumors and in vivo chromatin immunoprecipitation assays revealed a set of direct target genes that are bound by SRC-2 and exhibit downregulated expression in Src-2-/- liver tumors. We demonstrate that activation of SHP (Small Heterodimer Partner), DKK4 (Dickkopf-4), and CADM4 (Cell Adhesion Molecule 4) by SRC-2 suppresses tumorigenesis in vitro and in vivo. These studies suggest that SRC-2 may exhibit oncogenic or tumor suppressor activity depending on the target genes and nuclear receptors that are expressed in distinct tissues and illuminate the mechanisms of tumor suppression by SRC-2 in liver.
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- 2017
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284. SBRT for early-stage glottic larynx cancer-Initial clinical outcomes from a phase I clinical trial.
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David L Schwartz, Alan Sosa, Stephen G Chun, Chiuxiong Ding, Xian-Jin Xie, Lucien A Nedzi, Robert D Timmerman, and Baran D Sumer
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Medicine ,Science - Abstract
To confirm safety and feasibility of hypofractionated SBRT for early-stage glottic laryngeal cancer.Twenty consecutive patients with cTis-T2N0M0 carcinoma of glottic larynx were enrolled. Patients entered dose-fractionation cohorts of incrementally shorter bio-equivalent schedules starting with 50 Gy in 15 fractions (fx), followed by 45 Gy/10 fx and, finally, 42.5 Gy/5 fx. Maximum combined CTV-PTV expansion was limited to 5 mm. Patients were treated on a Model G5 Cyberknife (Accuray, Sunnyvale, CA).Median follow-up is 13.4 months (range: 5.6-24.6 months), with 12 patients followed for at least one year. Maximum acute toxicity consisted of grade 2 hoarseness and dysphagia. Maximum chronic toxicity was seen in one patient treated with 45 Gy/10 fx who continued to smoke >1 pack/day and ultimately required protective tracheostomy. At 1-year follow-up, estimated local disease free survival for the full cohort was 82%. Overall survival is 100% at last follow-up.We were able to reduce equipotent total fractions of SBRT from 15 to 5 without exceeding protocol-defined acute/subacute toxicity limits. With limited follow-up, disease control appears comparable to standard treatment. We continue to enroll to the 42.5 Gy/5 fx cohort and follow patients for late toxicity.ClinicalTrials.gov NCT01984502.
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- 2017
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285. Bootcamp During Neoadjuvant Chemotherapy for Breast Cancer: A Randomized Pilot Trial
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Roshni Rao, Veronica Cruz, Yan Peng, Amy Harker-Murray, Barbara B. Haley, Hong Zhao, Xian-Jin Xie, and David Euhus
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2012
286. Differential radiosensitivity phenotypes of DNA-PKcs mutations affecting NHEJ and HRR systems following irradiation with gamma-rays or very low fluences of alpha particles.
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Yu-Fen Lin, Hatsumi Nagasawa, John B Little, Takamitsu A Kato, Hung-Ying Shih, Xian-Jin Xie, Paul F Wilson, John R Brogan, Akihiro Kurimasa, David J Chen, Joel S Bedford, and Benjamin P C Chen
- Subjects
Medicine ,Science - Abstract
We have examined cell-cycle dependence of chromosomal aberration induction and cell killing after high or low dose-rate γ irradiation in cells bearing DNA-PKcs mutations in the S2056 cluster, the T2609 cluster, or the kinase domain. We also compared sister chromatid exchanges (SCE) production by very low fluences of α-particles in DNA-PKcs mutant cells, and in homologous recombination repair (HRR) mutant cells including Rad51C, Rad51D, and Fancg/xrcc9. Generally, chromosomal aberrations and cell killing by γ-rays were similarly affected by mutations in DNA-PKcs, and these mutant cells were more sensitive in G1 than in S/G2 phase. In G1-irradiated DNA-PKcs mutant cells, both chromosome- and chromatid-type breaks and exchanges were in excess than wild-type cells. For cells irradiated in late S/G2 phase, mutant cells showed very high yields of chromatid breaks compared to wild-type cells. Few exchanges were seen in DNA-PKcs-null, Ku80-null, or DNA-PKcs kinase dead mutants, but exchanges in excess were detected in the S2506 or T2609 cluster mutants. SCE induction by very low doses of α-particles is resulted from bystander effects in cells not traversed by α-particles. SCE seen in wild-type cells was completely abolished in Rad51C- or Rad51D-deficient cells, but near normal in Fancg/xrcc9 cells. In marked contrast, very high levels of SCEs were observed in DNA-PKcs-null, DNA-PKcs kinase-dead and Ku80-null mutants. SCE induction was also abolished in T2609 cluster mutant cells, but was only slightly reduced in the S2056 cluster mutant cells. Since both non-homologous end-joining (NHEJ) and HRR systems utilize initial DNA lesions as a substrate, these results suggest the possibility of a competitive interference phenomenon operating between NHEJ and at least the Rad51C/D components of HRR; the level of interaction between damaged DNA and a particular DNA-PK component may determine the level of interaction of such DNA with a relevant HRR component.
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- 2014
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287. Multipotent capacity of immortalized human bronchial epithelial cells.
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Oliver Delgado, Aadil A Kaisani, Monica Spinola, Xian-Jin Xie, Kimberly G Batten, John D Minna, Woodring E Wright, and Jerry W Shay
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Medicine ,Science - Abstract
While the adult murine lung utilizes multiple compartmentally restricted progenitor cells during homeostasis and repair, much less is known about the progenitor cells from the human lung. Translating the murine stem cell model to humans is hindered by anatomical differences between species. Here we show that human bronchial epithelial cells (HBECs) display characteristics of multipotent stem cells of the lung. These HBECs express markers indicative of several epithelial types of the adult lung when experimentally tested in cell culture. When cultured in three different three-dimensional (3D) systems, subtle changes in the microenvironment result in unique responses including the ability of HBECs to differentiate into multiple central and peripheral lung cell types. These new findings indicate that the adult human lung contains a multipotent progenitor cell whose differentiation potential is primarily dictated by the microenvironment. The HBEC system is not only important in understanding mechanisms for specific cell lineage differentiation, but also for examining changes that correlate with human lung diseases including lung cancer.
- Published
- 2011
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288. TGF-beta1-induced expression of human Mdm2 correlates with late-stage metastatic breast cancer.
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Araki, Shinako, Eitel, Jacob A., Batuello, Christopher N., Bijangi-Vishehsaraei, Khadijeh, Xian-Jin Xie, Danielpour, David, P0ll0k, Karen E., Boothman, David A., Mayo, Lindsey D., Xie, Xian-Jin, and Pollok, Karen E
- Subjects
- *
BREAST cancer gene therapy , *GENE amplification , *GENE expression , *TRANSCRIPTION factors , *CANCER genetics , *GENE therapy , *CANCER treatment , *APOPTOSIS , *BREAST tumors , *CARRIER proteins , *CELLS , *COMPARATIVE studies , *GENES , *GROWTH factors , *HETEROCYCLIC compounds , *IMIDAZOLES , *RESEARCH methodology , *MEDICAL cooperation , *PROTEINS , *RESEARCH , *TUMOR classification , *EVALUATION research , *PHARMACODYNAMICS - Abstract
The E3 ubiquitin ligase human murine double minute (HDM2) is overexpressed in 40%-80% of late-stage metastatic cancers in the absence of gene amplification. Hdm2 regulates p53 stability via ubiquitination and has also been implicated in altering the sensitivity of cells to TGF-beta1. Whether TGF-beta1 signaling induces Hdm2 expression leading to HDM2-mediated destabilization of p53 has not been investigated. In this study, we report that TGF-beta1-activated SMA- and MAD3 (Smad3/4) transcription factors specifically bound to the second promoter region of HDM2, leading to increased HDM2 protein expression and destabilization of p53 in human cancer cell lines. Additionally, TGF-beta1 expression led to Smad3 activation and murine double minute 2 (Mdm2) expression in murine mammary epithelial cells during epithelial-to-mesenchymal transition (EMT). Furthermore, histological analyses of human breast cancer samples demonstrated that approximately 65% of late-stage carcinomas were positive for activated Smad3 and HDM2, indicating a strong correlation between TGF-beta1-mediated induction of HDM2 and late-stage tumor progression. Identification of Hdm2 as a downstream target of TGF-beta1 represents a critical prosurvival mechanism in cancer progression and provides another point for therapeutic intervention in late-stage cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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289. Time Frame Analysis of Potassium Nitrate and Hydrogen Peroxide Diffusion into the Pulp Chamber.
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Alshehri A, Kolker J, Teixeira E, Xie XJ, Fiegel J, and Wertz P
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- Humans, Nitrates pharmacokinetics, Random Allocation, Dental Pulp Cavity, Hydrogen Peroxide pharmacokinetics, Potassium Compounds pharmacokinetics, Tooth Bleaching methods, Tooth Bleaching Agents pharmacokinetics
- Abstract
Objectives: The primary objective of this study was to evaluate the effect of an innovative double-layer, single-application desensitizing/whitening technique of potassium nitrate (PN) and hydrogen peroxide (HP) diffusion at different time points., Methods and Materials: Specimens were prepared from extracted caries-free human molars (n=90). Teeth were randomly assigned into four groups: Group A (HP CTRL) treated with 25% HP for 45 minutes, group B (PN CTRL) received a single-layer treatment of 5% PN for 45 minutes, group C received the double-layer treatment of 5% PN and 25% HP for 45 minutes, and group D received a 3% PN incorporated in a 40% HP gel for 45 minutes. PN and HP concentrations were measured at 5, 15, 30, and 45 minutes using standard chemical kits. Group comparisons were made using a repeated measures analysis of variance (ANOVA) test. Pairwise tests for differences in diffusion were done, using the Tukey adjustment of p values for multiple comparisons. A significance level of 5% was used., Results: Group A showed no significant difference in HP diffusion rates between the 5- and 15-minute, 15- and 30-minute, or 30- and 45-minute time points; group D showed a similar trend; however, group C differed significantly at the 5-and 15-minute time points (p=0.0004), at the 15-and 30-minute time points (p=0.0026), and the 30- and 45-minute time points (p=0.0014). For PN diffusion, groups B and C had significantly different levels at the 15-, 30-, and 45-minute time points (p=0.0005, p=0.0002, and p<0.0001, respectively); and at the 15-, 30-, and 45-minute time points, groups D and C had significantly different PN diffusion (p=0.0327, p=0.0004, and p< 0.0001, respectively). Group C had significantly different PN diffusion at the 5- and 15-minute time points (p=0.0004), the 15- and 30-minute time points (p=0.0026), and at the 30- and 45-minute time points (p=0.0014)., Conclusion: The double-layer technique showed superior diffusion of PN into the pulp chamber and did not affect the diffusion of HP when compared to other techniques. The double-layer technique may be suggested as an alternative tooth-whitening treatment to minimize tooth sensitivity., (©Operative Dentistry, 2022.)
- Published
- 2022
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