169,041 results on '"Watkins A."'
Search Results
252. The use of generative AI in research: a production management case study from the aviation industry
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Walton, R. O. and Watkins, D. V.
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- 2024
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253. A serine-conjugated butyrate prodrug with high oral bioavailability suppresses autoimmune arthritis and neuroinflammation in mice
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Cao, Shijie, Budina, Erica, Raczy, Michal M., Solanki, Ani, Nguyen, Mindy, Beckman, Taryn N., Reda, Joseph W., Hultgren, Kevin, Ang, Phillip S., Slezak, Anna J., Hesser, Lauren A., Alpar, Aaron T., Refvik, Kirsten C., Shores, Lucas S., Pillai, Ishita, Wallace, Rachel P., Dhar, Arjun, Watkins, Elyse A., and Hubbell, Jeffrey A.
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- 2024
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254. DLK-MAPK Signaling Coupled with DNA Damage Promotes Intrinsic Neurotoxicity Associated with Non-Mutated Tau
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Li, Sanming, Roy, Ethan R., Wang, Yanyu, Watkins, Trent, and Cao, Wei
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- 2024
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255. Learning to Model the World with Language
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Lin, Jessy, Du, Yuqing, Watkins, Olivia, Hafner, Danijar, Abbeel, Pieter, Klein, Dan, and Dragan, Anca
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
To interact with humans and act in the world, agents need to understand the range of language that people use and relate it to the visual world. While current agents can learn to execute simple language instructions, we aim to build agents that leverage diverse language -- language like "this button turns on the TV" or "I put the bowls away" -- that conveys general knowledge, describes the state of the world, provides interactive feedback, and more. Our key idea is that agents should interpret such diverse language as a signal that helps them predict the future: what they will observe, how the world will behave, and which situations will be rewarded. This perspective unifies language understanding with future prediction as a powerful self-supervised learning objective. We instantiate this in Dynalang, an agent that learns a multimodal world model to predict future text and image representations, and learns to act from imagined model rollouts. While current methods that learn language-conditioned policies degrade in performance with more diverse types of language, we show that Dynalang learns to leverage environment descriptions, game rules, and instructions to excel on tasks ranging from game-playing to navigating photorealistic home scans. Finally, we show that our method enables additional capabilities due to learning a generative model: Dynalang can be pretrained on text-only data, enabling learning from offline datasets, and generate language grounded in an environment., Comment: ICML 2024. Website: https://dynalang.github.io/
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- 2023
256. ForestMonkey: Toolkit for Reasoning with AI-based Defect Detection and Classification Models
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Zhang, Jiajun, Cosma, Georgina, Bugby, Sarah, and Watkins, Jason
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Computer Science - Artificial Intelligence - Abstract
Artificial intelligence (AI) reasoning and explainable AI (XAI) tasks have gained popularity recently, enabling users to explain the predictions or decision processes of AI models. This paper introduces Forest Monkey (FM), a toolkit designed to reason the outputs of any AI-based defect detection and/or classification model with data explainability. Implemented as a Python package, FM takes input in the form of dataset folder paths (including original images, ground truth labels, and predicted labels) and provides a set of charts and a text file to illustrate the reasoning results and suggest possible improvements. The FM toolkit consists of processes such as feature extraction from predictions to reasoning targets, feature extraction from images to defect characteristics, and a decision tree-based AI-Reasoner. Additionally, this paper investigates the time performance of the FM toolkit when applied to four AI models with different datasets. Lastly, a tutorial is provided to guide users in performing reasoning tasks using the FM toolkit., Comment: 6 pages, 5 figures, accepted in 2023 IEEE symposium series on computational intelligence (SSCI)
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- 2023
257. Implementing and Benchmarking the Locally Competitive Algorithm on the Loihi 2 Neuromorphic Processor
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Parpart, Gavin, Risbud, Sumedh R., Kenyon, Garrett T., and Watkins, Yijing
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Hardware Architecture - Abstract
Neuromorphic processors have garnered considerable interest in recent years for their potential in energy-efficient and high-speed computing. The Locally Competitive Algorithm (LCA) has been utilized for power efficient sparse coding on neuromorphic processors, including the first Loihi processor. With the Loihi 2 processor enabling custom neuron models and graded spike communication, more complex implementations of LCA are possible. We present a new implementation of LCA designed for the Loihi 2 processor and perform an initial set of benchmarks comparing it to LCA on CPU and GPU devices. In these experiments LCA on Loihi 2 is orders of magnitude more efficient and faster for large sparsity penalties, while maintaining similar reconstruction quality. We find this performance improvement increases as the LCA parameters are tuned towards greater representation sparsity. Our study highlights the potential of neuromorphic processors, particularly Loihi 2, in enabling intelligent, autonomous, real-time processing on small robots, satellites where there are strict SWaP (small, lightweight, and low power) requirements. By demonstrating the superior performance of LCA on Loihi 2 compared to conventional computing device, our study suggests that Loihi 2 could be a valuable tool in advancing these types of applications. Overall, our study highlights the potential of neuromorphic processors for efficient and accurate data processing on resource-constrained devices.
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- 2023
258. DIP-RL: Demonstration-Inferred Preference Learning in Minecraft
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Novoseller, Ellen, Goecks, Vinicius G., Watkins, David, Miller, Josh, and Waytowich, Nicholas
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Human-Computer Interaction ,I.2.6 ,G.3 - Abstract
In machine learning for sequential decision-making, an algorithmic agent learns to interact with an environment while receiving feedback in the form of a reward signal. However, in many unstructured real-world settings, such a reward signal is unknown and humans cannot reliably craft a reward signal that correctly captures desired behavior. To solve tasks in such unstructured and open-ended environments, we present Demonstration-Inferred Preference Reinforcement Learning (DIP-RL), an algorithm that leverages human demonstrations in three distinct ways, including training an autoencoder, seeding reinforcement learning (RL) training batches with demonstration data, and inferring preferences over behaviors to learn a reward function to guide RL. We evaluate DIP-RL in a tree-chopping task in Minecraft. Results suggest that the method can guide an RL agent to learn a reward function that reflects human preferences and that DIP-RL performs competitively relative to baselines. DIP-RL is inspired by our previous work on combining demonstrations and pairwise preferences in Minecraft, which was awarded a research prize at the 2022 NeurIPS MineRL BASALT competition, Learning from Human Feedback in Minecraft. Example trajectory rollouts of DIP-RL and baselines are located at https://sites.google.com/view/dip-rl., Comment: Paper accepted at The Many Facets of Preference Learning Workshop at the International Conference on Machine Learning (ICML), Honolulu, Hawaii, USA, 2023
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- 2023
259. First Demonstration of the HeRALD Superfluid Helium Detector Concept
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Anthony-Petersen, R., Biekert, A., Chang, C. L., Chang, Y., Chaplinsky, L., Dushkin, A., Fink, C. W., Garcia-Sciveres, M., Guo, W., Hertel, S. A., Li, X., Lin, J., Mahapatra, R., Matava, W., McKinsey, D. N., Osterman, D. Z., Patel, P. K., Penning, B., Pinckney, H. D., Platt, M., Pyle, M., Qi, Y., Reed, M., Rischbieter, G. R. C, Romani, R. K., Serafin, A., Serfass, B., Smith, R. J., Sorensen, P., Suerfu, B., Suzuki, A., Velan, V., Wang, G., Wang, Y., Watkins, S. L., and Williams, M. R.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
The SPICE/HeRALD collaboration is performing R&D to enable studies of sub-GeV dark matter models using a variety of target materials. Here we report our recent progress on instrumenting a superfluid $^4$He target mass with a transition-edge sensor based calorimeter to detect both atomic signals (scintillation) and $^4$He quasiparticle (phonon and roton) excitations. The sensitivity of HeRALD to the critical "quantum evaporation" signal from $^4$He quasiparticles requires us to block the superfluid film flow to the calorimeter. We have developed a heat-free film-blocking method employing an unoxidized Cs film, which we implemented in a prototype "HeRALD v0.1" detector of ~10 g target mass. This article reports initial studies of the atomic and quasiparticle signal channels. A key result of this work is the measurement of the quantum evaporation channel's gain of 0.15 $\pm$ 0.01, which will enable $^4$He-based dark matter experiments in the near term. With this gain the HeRALD detector reported here has an energy threshold of 145 eV at 5 sigma, which would be sensitive to dark matter masses down to 220 MeV/c$^2$., Comment: 14 pages, 9 figures
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- 2023
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260. Morphological Image Analysis and Feature Extraction for Reasoning with AI-based Defect Detection and Classification Models
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Zhang, Jiajun, Cosma, Georgina, Bugby, Sarah, Finke, Axel, and Watkins, Jason
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
As the use of artificial intelligent (AI) models becomes more prevalent in industries such as engineering and manufacturing, it is essential that these models provide transparent reasoning behind their predictions. This paper proposes the AI-Reasoner, which extracts the morphological characteristics of defects (DefChars) from images and utilises decision trees to reason with the DefChar values. Thereafter, the AI-Reasoner exports visualisations (i.e. charts) and textual explanations to provide insights into outputs made by masked-based defect detection and classification models. It also provides effective mitigation strategies to enhance data pre-processing and overall model performance. The AI-Reasoner was tested on explaining the outputs of an IE Mask R-CNN model using a set of 366 images containing defects. The results demonstrated its effectiveness in explaining the IE Mask R-CNN model's predictions. Overall, the proposed AI-Reasoner provides a solution for improving the performance of AI models in industrial applications that require defect analysis., Comment: 8 pages, 3 figures, 5 tables; accepted in 2023 IEEE symposium series on computational intelligence (SSCI)
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- 2023
261. Quantifying the energy balance between the turbulent ionised gas and young stars
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Egorov, Oleg V., Kreckel, Kathryn, Glover, Simon C. O., Groves, Brent, Belfiore, Francesco, Emsellem, Eric, Klessen, Ralf S., Leroy, Adam K., Meidt, Sharon E., Sarbadhicary, Sumit K., Schinnerer, Eva, Watkins, Elizabeth J., Whitmore, Brad C., Barnes, Ashley T., Congiu, Enrico, Dale, Daniel A., Grasha, Kathryn, Larson, Kirsten L., Lee, Janice C., Méndez-Delgado, J. Eduardo, Thilker, David A., and Williams, Thomas G.
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Astrophysics - Astrophysics of Galaxies - Abstract
We investigate the ionised gas morphology, excitation properties, and kinematics in 19 nearby star-forming galaxies from the PHANGS-MUSE survey. We directly compare the kinetic energy of expanding superbubbles and the turbulent motions in the interstellar medium with the mechanical energy deposited by massive stars in the form of winds and supernovae, with the aim to answer whether the stellar feedback is responsible for the observed turbulent motions and to quantify the fraction of mechanical energy retained in the superbubbles. Based on the distribution of the flux and velocity dispersion in the H$\alpha$ line, we select 1484 regions of locally elevated velocity dispersion ($\sigma$(H$\alpha$)>45 km/s), including at least 171 expanding superbubbles. We analyse these regions and relate their properties to those of the young stellar associations and star clusters identified in PHANGS-HST data. We find a good correlation between the kinetic energy of the ionised gas and the total mechanical energy input from supernovae and stellar winds from the stellar associations, with a typical coupling efficiency of 10-20%. The contribution of mechanical energy by the supernovae alone is not sufficient to explain the measured kinetic energy of the ionised gas, which implies that pre-supernova feedback in the form of radiation/thermal pressure and winds is necessary. We find that the gas kinetic energy decreases with metallicity for our sample covering Z=0.5-1.0 Zsun, reflecting the lower impact of stellar feedback. For the sample of superbubbles, we find that about 40% of the young stellar associations are preferentially located in their rims. We also find a slightly higher (by ~15%) fraction of the youngest (<3 Myr) stellar associations in the rims of the superbubbles than in the centres, and the opposite for older associations, which implies possible propagation or triggering of star formation., Comment: Accepted by A&A. The abstract is abridged. 31 pages (including 8 pages in appendix), 20 figures, 2 tables
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- 2023
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262. Calibrating mid-infrared emission as a tracer of obscured star formation on HII-region scales in the era of JWST
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Belfiore, Francesco, Leroy, Adam K., Williams, Thomas G., Barnes, Ashley T., Bigiel, Frank, Boquien, Médéric, Cao, Yixian, Chastenet, Jérémy, Congiu, Enrico, Dale, Daniel A., Egorov, Oleg V., Eibensteiner, Cosima, Emsellem, Eric, Glover, Simon C. O., Groves, Brent, Hassani, Hamid, Klessen, Ralf S., Kreckel, Kathryn, Neumann, Lukas, Neumann, Justus, Querejeta, Miguel, Rosolowsky, Erik, Sanchez-Blazquez, Patricia, Sandstrom, Karin, Schinnerer, Eva, Sun, Jiayi, Sutter, Jessica, and Watkins, Elizabeth J.
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Astrophysics - Astrophysics of Galaxies - Abstract
Measurements of the star formation activity on cloud scales are fundamental to uncovering the physics of the molecular cloud, star formation, and stellar feedback cycle in galaxies. Infrared (IR) emission from small dust grains and polycyclic aromatic hydrocarbons (PAHs) are widely used to trace the obscured component of star formation. However, the relation between these emission features and dust attenuation is complicated by the combined effects of dust heating from old stellar populations and an uncertain dust geometry with respect to heating sources. We use images obtained with NIRCam and MIRI as part of the PHANGS--JWST survey to calibrate dust emission at 21$\rm \mu m$, and the emission in the PAH-tracing bands at 3.3, 7.7, 10, and 11.3$\rm \mu m$ as tracers of obscured star formation. We analyse $\sim$ 20000 optically selected HII regions across 19 nearby star-forming galaxies, and benchmark their IR emission against dust attenuation measured from the Balmer decrement. We model the extinction-corrected H$\alpha$ flux as the sum of the observed H$\alpha$ emission and a term proportional to the IR emission, with $a_{IR}$ as the proportionality coefficient. A constant $a_{IR}$ leads to extinction-corrected H$\alpha$ estimates which agree with those obtained with the Balmer decrement with a scatter of $\sim$ 0.1 dex for all bands considered. Among these bands, 21$\rm \mu m$ emission is demonstrated to be the best tracer of dust attenuation. The PAH-tracing bands underestimate the correction for bright HII regions, since in these environments the ratio of PAH-tracing bands to 21$\rm \mu m$ decreases, signalling destruction of the PAH molecules. For fainter HII regions all bands suffer from an increasing contamination from the diffuse infrared background., Comment: accepted for publication in A&A
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- 2023
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263. MoleCLUEs: Molecular Conformers Maximally In-Distribution for Predictive Models
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Maser, Michael, Tagasovska, Natasa, Lee, Jae Hyeon, and Watkins, Andrew
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Computer Science - Machine Learning ,Quantitative Biology - Quantitative Methods - Abstract
Structure-based molecular ML (SBML) models can be highly sensitive to input geometries and give predictions with large variance. We present an approach to mitigate the challenge of selecting conformations for such models by generating conformers that explicitly minimize predictive uncertainty. To achieve this, we compute estimates of aleatoric and epistemic uncertainties that are differentiable w.r.t. latent posteriors. We then iteratively sample new latents in the direction of lower uncertainty by gradient descent. As we train our predictive models jointly with a conformer decoder, the new latent embeddings can be mapped to their corresponding inputs, which we call \textit{MoleCLUEs}, or (molecular) counterfactual latent uncertainty explanations \citep{antoran2020getting}. We assess our algorithm for the task of predicting drug properties from 3D structure with maximum confidence. We additionally analyze the structure trajectories obtained from conformer optimizations, which provide insight into the sources of uncertainty in SBML., Comment: NeurIPS 2023 AI for Science Workshop
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- 2023
264. Optimizing Roman's High Latitude Wide Area Survey for Low Surface Brightness Astronomy
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Montes, Mireia, Annibali, Francesca, Bellazzini, Michele, Borlaff, Alejandro S., Brough, Sarah, Buitrago, Fernando, Chamba, Nushkia, Collins, Chris, Dell'Antonio, Ian, Escala, Ivanna, Gonzalez, Anthony H., Holwerda, Benne, Kaviraj, Sugata, Knapen, Johan, Koekemoer, Anton, Laine, Seppo, Marcum, Pamela, Martin, Garreth, Martinez-Delgado, David, Mihos, Chris, Ricotti, Massimo, Trujillo, Ignacio, and Watkins, Aaron E.
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
One of the last remaining frontiers in optical/near-infrared observational astronomy is the low surface brightness regime (LSB, V-band surface brightness, $\mu_V>$ 27 AB mag/arcsec$^2$). These are the structures at very low stellar surface densities, largely unseen by even current wide-field surveys such as the Legacy Survey. Studying this domain promises to be transformative for our understanding of star formation in low-mass galaxies, the hierarchical assembly of galaxies and galaxy clusters, and the nature of dark matter. It is thus essential to reach depths beyond $\mu_V$ = 30 AB mag/arcsec$^2$ to detect the faintest extragalactic sources, such as dwarf galaxies and the stellar halos around galaxies and within galaxy clusters. The High Latitude Wide Area Survey offers a unique opportunity to statistically study the LSB universe at unprecedented depths in the IR over an area of $\sim$2000 square degrees. The high spatial resolution will minimize source confusion, allowing an unbiased characterization of LSB structures, including the identification of stars in nearby LSB galaxies and globular clusters. In addition, the combination of Roman with other upcoming deep imaging observatories (such as Rubin) will provide multi-wavelength coverage to derive photometric redshifts and infer the stellar populations of LSB objects., Comment: White paper submitted to the call for input for the Roman Space Telescope's Core Community Surveys
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- 2023
265. 3D molecule generation by denoising voxel grids
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Pinheiro, Pedro O., Rackers, Joshua, Kleinhenz, Joseph, Maser, Michael, Mahmood, Omar, Watkins, Andrew Martin, Ra, Stephen, Sresht, Vishnu, and Saremi, Saeed
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Computer Science - Machine Learning ,Quantitative Biology - Quantitative Methods - Abstract
We propose a new score-based approach to generate 3D molecules represented as atomic densities on regular grids. First, we train a denoising neural network that learns to map from a smooth distribution of noisy molecules to the distribution of real molecules. Then, we follow the neural empirical Bayes framework (Saremi and Hyvarinen, 19) and generate molecules in two steps: (i) sample noisy density grids from a smooth distribution via underdamped Langevin Markov chain Monte Carlo, and (ii) recover the "clean" molecule by denoising the noisy grid with a single step. Our method, VoxMol, generates molecules in a fundamentally different way than the current state of the art (ie, diffusion models applied to atom point clouds). It differs in terms of the data representation, the noise model, the network architecture and the generative modeling algorithm. Our experiments show that VoxMol captures the distribution of drug-like molecules better than state of the art, while being faster to generate samples.
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- 2023
266. Constraints on the decay of $^{180m}$Ta
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Arnquist, I. J., Avignone III, F. T., Barabash, A. S., Barton, C. J., Bhimani, K. H., Blalock, E., Bos, B., Busch, M., Buuck, M., Caldwell, T. S., Christofferson, C. D., Chu, P. -H., Clark, M. L., Cuesta, C., Detwiler, J. A., Efremenko, Yu., Ejiri, H., Elliott, S. R., Giovanetti, G. K., Goett, J., Green, M. P., Gruszko, J., Guinn, I. S., Guiseppe, V. E., Haufe, C. R., Henning, R., Aguilar, D. Hervas, Hoppe, E. W., Hostiuc, A., Kim, I., Kouzes, R. T., Lannen V, T. E., Li, A., Lopez-Castano, J. M., Massarczyk, R., Meijer, S. J., Meijer, W., Oli, T. K., Paudel, L. S., Pettus, W., Poon, A. W. P., Radford, D. C., Reine, A. L., Rielage, K., Rouyer, A., Ruof, N. W., Schaper, D. C., Schleich, S. J., Smith-Gandy, T. A., Tedeschi, D., Varner, R. L., Vasilyev, S., Watkins, S. L., Wilkerson, J. F., Wiseman, C., Xu, W., Yu, C. -H., Alves, D. S. M., and Ramani, H.
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Nuclear Experiment ,High Energy Physics - Experiment - Abstract
$^{180m}$Ta is a rare nuclear isomer whose decay has never been observed. Its remarkably long lifetime surpasses the half-lives of all other known $\beta$ and electron capture decays due to the large K-spin differences and small energy differences between the isomeric and lower energy states. Detecting its decay presents a significant experimental challenge but could shed light on neutrino-induced nucleosynthesis mechanisms, the nature of dark matter and K-spin violation. For this study, we repurposed the MAJORANA DEMONSTRATOR, an experimental search for the neutrinoless double-beta decay of $^{76}$Ge using an array of high-purity germanium detectors, to search for the decay of $^{180m}$Ta. More than 17 kilograms, the largest amount of tantalum metal ever used for such a search was installed within the ultra-low background detector array. In this paper we present results from the first year of Ta data taking and provide an updated limit for the $^{180m}$Ta half-life on the different decay channels. With new limits up to 1.5 x $10^{19}$ years, we improved existing limits by one to two orders of magnitude. This result is the most sensitive search for a single $\beta$ and electron capture decay ever achieved.
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- 2023
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267. The Gas Morphology of Nearby Star-Forming Galaxies
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Stuber, S. K., Schinnerer, E., Williams, T. G., Querejeta, M., Meidt, S., Emsellem, E., Barnes, A., Klessen, R. S., Leroy, A. K., Neumann, J., Sormani, M. C., Bigiel, F., Chevance, M., Dale, D., Faesi, C., Glover, S. C. O., Grasha, K., Kruijssen, J. M. D., Liu, D., Pan, H., Pety, J., Pinna, F., Saito, T., Usero, A., and Watkins, E. J.
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Astrophysics - Astrophysics of Galaxies - Abstract
The morphology of a galaxy stems from secular and environmental processes during its evolutionary history. Thus galaxy morphologies have been a long used tool to gain insights on galaxy evolution. We visually classify morphologies on cloud-scales based on the molecular gas distribution of a large sample of 79 nearby main-sequence galaxies, using 1'' resolution CO(2-1) ALMA observations taken as part of the PHANGS survey. To do so, we devise a morphology classification scheme for different types of bars, spiral arms (grand-design, flocculent, multi-arm and smooth), rings (central and non-central rings) similar to the well-established optical ones, and further introduce bar lane classes. In general, our cold gas based morphologies agree well with the ones based on stellar light. Both our bars as well as grand-design spiral arms are preferentially found at the higher mass end of our sample. Our gas-based classification indicates a potential for misidentification of unbarred galaxies in the optical when massive star formation is present. Central or nuclear rings are present in a third of the sample with a strong preferences for barred galaxies (59%). As stellar bars are present in 45$\pm$5% of our sample galaxies, we explore the utility of molecular gas as tracer of bar lane properties. We find that more curved bar lanes have a shorter radial extent in molecular gas and reside in galaxies with lower molecular to stellar mass ratios than those with straighter geometries. Galaxies display a wide range of CO morphology, and this work provides a catalogue of morphological features in a representative sample of nearby galaxies., Comment: 17 pages, 14 figures (+ Appendix 9 pages, 4 figures). Accepted for publication in A&A
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- 2023
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268. DPOK: Reinforcement Learning for Fine-tuning Text-to-Image Diffusion Models
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Fan, Ying, Watkins, Olivia, Du, Yuqing, Liu, Hao, Ryu, Moonkyung, Boutilier, Craig, Abbeel, Pieter, Ghavamzadeh, Mohammad, Lee, Kangwook, and Lee, Kimin
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Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Learning from human feedback has been shown to improve text-to-image models. These techniques first learn a reward function that captures what humans care about in the task and then improve the models based on the learned reward function. Even though relatively simple approaches (e.g., rejection sampling based on reward scores) have been investigated, fine-tuning text-to-image models with the reward function remains challenging. In this work, we propose using online reinforcement learning (RL) to fine-tune text-to-image models. We focus on diffusion models, defining the fine-tuning task as an RL problem, and updating the pre-trained text-to-image diffusion models using policy gradient to maximize the feedback-trained reward. Our approach, coined DPOK, integrates policy optimization with KL regularization. We conduct an analysis of KL regularization for both RL fine-tuning and supervised fine-tuning. In our experiments, we show that DPOK is generally superior to supervised fine-tuning with respect to both image-text alignment and image quality. Our code is available at https://github.com/google-research/google-research/tree/master/dpok., Comment: NeurIPS 2023
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- 2023
269. Fuelling the nuclear ring of NGC 1097
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Sormani, Mattia C., Barnes, Ashley T., Sun, Jiayi, Stuber, Sophia K., Schinnerer, Eva, Emsellem, Eric, Leroy, Adam K., Glover, Simon C. O., Henshaw, Jonathan D., Meidt, Sharon E., Neumann, Justus, Querejeta, Miguel, Williams, Thomas G., Bigiel, Frank, Eibensteiner, Cosima, Fragkoudi, Francesca, Levy, Rebecca C., Grasha, Kathryn, Klessen, Ralf S., Kruijssen, J. M. Diederik, Neumayer, Nadine, Pinna, Francesca, Rosolowsky, Erik W., Smith, Rowan J., Teng, Yu-Hsuan, Tress, Robin G., and Watkins, Elizabeth J.
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Astrophysics - Astrophysics of Galaxies - Abstract
Galactic bars can drive cold gas inflows towards the centres of galaxies. The gas transport happens primarily through the so-called bar ``dust lanes'', which connect the galactic disc at kpc scales to the nuclear rings at hundreds of pc scales much like two gigantic galactic rivers. Once in the ring, the gas can fuel star formation activity, galactic outflows, and central supermassive black holes. Measuring the mass inflow rates is therefore important to understanding the mass/energy budget and evolution of galactic nuclei. In this work, we use CO datacubes from the PHANGS-ALMA survey and a simple geometrical method to measure the bar-driven mass inflow rate onto the nuclear ring of the barred galaxy NGC~1097. The method assumes that the gas velocity in the bar lanes is parallel to the lanes in the frame co-rotating with the bar, and allows one to derive the inflow rates from sufficiently sensitive and resolved position-position-velocity diagrams if the bar pattern speed and galaxy orientations are known. We find an inflow rate of $\dot{M}=(3.0 \pm 2.1)\, \rm M_\odot\, yr^{-1}$ averaged over a time span of 40 Myr, which varies by a factor of a few over timescales of $\sim$10 Myr. Most of the inflow appears to be consumed by star formation in the ring which is currently occurring at a rate of ${\rm SFR}\simeq~1.8$-$2 \rm M_\odot\, yr^{-1}$, suggesting that the inflow is causally controlling the star formation rate in the ring as a function of time., Comment: Accepted in MNRAS
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- 2023
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270. ColMix -- A Simple Data Augmentation Framework to Improve Object Detector Performance and Robustness in Aerial Images
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Ly, Cuong, Jorgenson, Grayson, de Jesus, Dan Rosa, Kvinge, Henry, Attarian, Adam, and Watkins, Yijing
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
In the last decade, Convolutional Neural Network (CNN) and transformer based object detectors have achieved high performance on a large variety of datasets. Though the majority of detection literature has developed this capability on datasets such as MS COCO, these detectors have still proven effective for remote sensing applications. Challenges in this particular domain, such as small numbers of annotated objects and low object density, hinder overall performance. In this work, we present a novel augmentation method, called collage pasting, for increasing the object density without a need for segmentation masks, thereby improving the detector performance. We demonstrate that collage pasting improves precision and recall beyond related methods, such as mosaic augmentation, and enables greater control of object density. However, we find that collage pasting is vulnerable to certain out-of-distribution shifts, such as image corruptions. To address this, we introduce two simple approaches for combining collage pasting with PixMix augmentation method, and refer to our combined techniques as ColMix. Through extensive experiments, we show that employing ColMix results in detectors with superior performance on aerial imagery datasets and robust to various corruptions.
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- 2023
271. Co-mapping Cellular Content and Extracellular Matrix with Hemodynamics in Intact Arterial Tissues Using Scanning Immunofluorescent Multiphoton Microscopy
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Tobe, Yasutaka, Robertson, Anne, Ramezanpour, Mehdi, Cebral, Juan, Watkins, Simon, Charbel, Fady, Amin-Hanjani, Sepideh, Yu, Alexander, Cheng, Boyle, and Woo, Henry
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Quantitative Biology - Quantitative Methods - Abstract
Deviation of blood flow from an optimal range is known to be associated with the initiation and progression of vascular pathologies. Important open questions remain about how the abnormal flow drives specific wall changes in pathologies such as cerebral aneurysms where the flow is highly heterogeneous and complex. This knowledge gap precludes the clinical use of readily available flow data to predict outcomes and improve treatment of these diseases. As both flow and the pathological wall changes are spatially heterogeneous, a crucial requirement for progress in this area is a methodology for co-mapping local data from vascular wall biology with local hemodynamic data. In this study, we developed an imaging pipeline to address this pressing need. A protocol that employs scanning multiphoton microscopy was designed to obtain 3D data sets for smooth muscle actin, collagen and elastin in intact vascular specimens. A cluster analysis was developed to objectively categorize the smooth muscle cells (SMC) across the vascular specimen based on SMC density. In the final step in this pipeline, the location specific categorization of SMC, along with wall thickness was co-mapped with patient specific hemodynamic results, enabling direct quantitative comparison of local flow and wall biology in 3D intact specimens., Comment: 36 pages, 5 figures
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- 2023
272. Humans, AI, and Context: Understanding End-Users' Trust in a Real-World Computer Vision Application
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Kim, Sunnie S. Y., Watkins, Elizabeth Anne, Russakovsky, Olga, Fong, Ruth, and Monroy-Hernández, Andrés
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Computer Science - Human-Computer Interaction ,Computer Science - Artificial Intelligence - Abstract
Trust is an important factor in people's interactions with AI systems. However, there is a lack of empirical studies examining how real end-users trust or distrust the AI system they interact with. Most research investigates one aspect of trust in lab settings with hypothetical end-users. In this paper, we provide a holistic and nuanced understanding of trust in AI through a qualitative case study of a real-world computer vision application. We report findings from interviews with 20 end-users of a popular, AI-based bird identification app where we inquired about their trust in the app from many angles. We find participants perceived the app as trustworthy and trusted it, but selectively accepted app outputs after engaging in verification behaviors, and decided against app adoption in certain high-stakes scenarios. We also find domain knowledge and context are important factors for trust-related assessment and decision-making. We discuss the implications of our findings and provide recommendations for future research on trust in AI., Comment: FAccT 2023
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- 2023
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273. The impact of HII regions on Giant Molecular Cloud properties in nearby galaxies sampled by PHANGS ALMA and MUSE
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Zakardjian, Antoine, Pety, Jérôme, Herrera, Cinthya N., Hughes, Annie, Oakes, Elias, Kreckel, Kathryn, Faesi, Chris, Glover, Simon C. O., Groves, Brent, Klessen, Ralf S., Meidt, Sharon, Barnes, Ashley, Belfiore, Francesco, Bešlić, Ivana, Bigiel, Frank, Blanc, Guillermo A., Chevance, Mélanie, Dale, Daniel A., Brok, Jakob den, Eibensteiner, Cosima, Emsellem, Eric, García-Rodríguez, Axel, Grasha, Kathryn, Koch, Eric W., Leroy, Adam K., Liu, Daizhong, Elroy, Rebecca Mc, Neumann, Lukas, Pan, Hsi-An, Querejeta, Miguel, Razza, Alessandro, Rosolowsky, Erik, Saito, Toshiki, Santoro, Francesco, Schinnerer, Eva, Sun, Jiyai, Usero, Antonio, Watkins, Elizabeth J., and Williams, Thomas
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Astrophysics - Astrophysics of Galaxies - Abstract
We identify giant molecular clouds (GMCs) associated with HII regions for a sample of 19 nearby galaxies using catalogs of GMCs and H regions released by the PHANGS-ALMA and PHANGS-MUSE surveys, using the overlap of the CO and H{\alpha} emission as the key criterion for physical association. We compare the distributions of GMC and HII region properties for paired and non-paired objects. We investigate correlations between GMC and HII region properties among galaxies and across different galactic environments to determine whether GMCs that are associated with HII regions have significantly distinct physical properties to the parent GMC population. We identify trends between the H{\alpha} luminosity of an HII region and the CO peak brightness and the molecular mass of GMCs that we tentatively attribute to a direct physical connection between the matched objects, and which arise independently of underlying environmental variations of GMC and HII region properties within galaxies. The study of the full sample nevertheless hides a large variability galaxy by galaxy. Our results suggests that at the ~100 pc scales accessed by the PHANGS-ALMA and PHANGS-MUSE data, pre-supernova feedback mechanisms in HII regions have a subtle but measurable impact on the properties of the surrounding molecular gas, as inferred from CO observations.
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- 2023
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274. Shakespeare in the Theatre: Sarah Siddons and John Philip Kemble by Arden Shakespeare (review)
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Watkins, Stephen
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- 2024
275. Time-Resolved Spatial Distributions of Individual Components of Electroactive Films during Potentiodynamic Electrodeposition
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Rachel M. Sapstead, Robert M. Dalgliesh, Virginia C. Ferreira, Charlotte Beebee, Erik Watkins, A. Robert Hillman, Karl S. Ryder, Emma L. Smith, and Nina-Juliane Steinke
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Physical and theoretical chemistry ,QD450-801 - Published
- 2024
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276. Discourses of Distrust: How Lack of Trust in the U.S. Health-Care System Shaped COVID-19 Vaccine Hesitancy
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Amy Casselman-Hontalas, Dominique Adams-Santos, and Celeste Watkins-Hayes
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trust ,vaccine ,vaccine hesitancy ,covid-19 ,public health ,health care ,health insurance ,institutions ,medical-industrial complex ,Social Sciences - Abstract
This article explores the relationships between the American health-care system, trust in institutions, and decision-making processes that have affected COVID-19 vaccine uptake. Findings are based on an analysis of a nationally representative sample of 137 individuals who participated in semi-structured qualitative interviews during the rollout of the first publicly available vaccine in the first quarter of 2021. The vast majority of respondents reported negative experiences with American health care that predated the pandemic, which generated distrust in medical institutions, including hospitals, private health insurance corporations, the pharmaceutical industry, and related government institutions. The article considers the impact of institutional distrust on attitudes about vaccine uptake. Responses fell along a spectrum from vaccine refusal to vaccine acceptance. Sentiment across categories revealed a high degree of hesitancy framed in terms of institutional distrust. The data reveal a complex landscape of beliefs and perceptions, illustrating widespread hesitancy and ambivalence among participants.
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- 2024
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277. Empagliflozin to prevent progressive adverse remodelling after myocardial infarction (EMPRESS‐MI): rationale and design
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Jaclyn Carberry, Mark C. Petrie, Matthew M.Y. Lee, Katriona Brooksbank, Ross T. Campbell, Richard Good, Pardeep S. Jhund, Peter Kellman, Ninian N. Lang, Kenneth Mangion, Patrick B. Mark, Alex McConnachie, John J.V. McMurray, Barbara Meyer, Vanessa Orchard, Aadil Shaukat, Stuart Watkins, Paul Welsh, Naveed Sattar, Colin Berry, and Kieran F. Docherty
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Heart failure ,Myocardial infarction ,SGLT2 inhibitor ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Aims Patients with a reduced left ventricular ejection fraction (LVEF) following an acute myocardial infarction (MI) are at risk of progressive adverse cardiac remodelling that can lead to the development of heart failure and death. The early addition of a sodium‐glucose cotransporter 2 (SGLT2) inhibitor to standard treatment may delay or prevent progressive adverse remodelling in these patients. Methods and results EMpagliflozin to PREvent worSening of left ventricular volumes and Systolic function after Myocardial Infarction (EMPRESS‐MI) is a randomized, double‐blind, placebo‐controlled, multi‐centre trial designed to assess the effect of empagliflozin on cardiac remodelling evaluated using cardiovascular magnetic resonance (CMR) in 100 patients with left ventricular systolic dysfunction following MI. Eligible patients were those ≥12 h and ≤14 days following acute MI, with an LVEF
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- 2024
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278. Use Modern Tools to Teach Ancient Wisdom
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Shannon Watkins and Jenna Robinson
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All learning, particularly higher learning, is premised on the notion that there is such a thing as truth and that it is eminently worth pursuing. All serious inquiries into the various branches of human knowledge have the discovery and dissemination of truth as their end goals. The humanities are no exception. In the last several decades, however, the disciplines collectively known as the humanities--philosophy, history, literature, and art--have not conducted themselves with the same seriousness as the hard sciences. Truth-seeking and the desire to put knowledge to good use are not mutually opposed goals. But they should not be treated interchangeably. Universities can and should train students to be skilled professionals. Empiricism, specialization, and technological progress have their place in the university. They are means, however, and not ends to higher education's ultimate purpose: human flourishing. Students must be grounded in wisdom that offers a unifying vision of the "kind" of professionals they should aspire to be. In short, universities need to restore the cultivation of wisdom to its central place and put modern tools in the service of ancient wisdom.
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- 2024
279. Construct Validation of an Instrument That Assesses Quality of Instruction in Community College Algebra
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Rik Lamm, Vilma Mesa, Nidhi Kohli, Irene Duranczyk, Laura Watkins, and April Ström
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The Evaluating the Quality of Instruction in Post-secondary Mathematics (EQIPM) is a 14-item instrument that uses videos of teaching to investigate the quality of instruction in college algebra courses taught at community colleges. We hypothesize that quality of instruction can be characterized along three distinct factors, the interactions between: (a) students and the content, (b) instructors and the content, and (c) students and the instructors. We used confirmatory factor analysis to empirically evaluate this hypothesis. Using coding of over 900 segments of video of instruction from 40 intermediate and college algebra teachers from eight community colleges, we performed a factor analysis to identify the structure of the instrument. Our findings suggest that the EQIPM instrument captures the three hypothesized underlying factors of quality of instruction with adequate fit statistics and factor loadings. The availability of this instrument opens the door for further research on aspects of quality that influence student performance and for promising programs of professional development for community college faculty teaching mathematics.
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- 2024
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280. Promoting College Retention for Minority First-Generation Students: The Importance of Transitional Adjustment, Academic Support, and Validation
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Jacoby A. Watkins
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College retention is a topic of concern for many leaders of post-secondary institutions. This study explores the multifaceted elements of a summer bridge program aimed at bolstering college retention for minority first-generation students through a combination of mentorship, academic support, and community-building initiatives. The purpose of the study was to evaluate the relationships between the essential elements of first-generation minority college students' participation in the summer bridge program and how these elements may affect retention rates at a local four-year institution in Southeast Florida. Using a survey instrument as the research methodology, the researcher investigated the program's impact on students' academic success, social integration, and overall retention rates. By examining the experiences and perspectives of 38 sample participants, this research provides valuable insights into the design and implementation of effective support systems that foster the persistence and success of minority first-generation college students. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2024
281. Facilitating Pathways to Postsecondary Education for Justice Involved Individuals
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Danielle Liautaud-Watkins
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This phenomenological study examined ways in which a coordinated and proactive network of professionals could support justice involved individuals in their postsecondary educational pursuits. A critical qualitative methodology was applied to explore context and opportunities for services to be used across organizations, governmental agencies and two- and four-year colleges within the United States who are working with a growing justice involved population. Nine cross-sector professionals were interviewed, using a cross-sectional design to answer two research questions. Findings were consistent with research to show that a network of professionals could help justice involved individuals to better access and attain postsecondary education through intentional and transparent support services. The following thematic priorities emerged as ways this network could be impactful: 1.) creating a pathway of communication and connection, 2.) addressing sustainable basic needs 3.) coordinated community partnerships. 4.) holistic supports that facilitate access to real and tangible resources; and remembering that 5.) background and family dynamics matter. Participants voiced that while services are available for justice involved individuals, there is a lack of uniformity and transparency making access to these resources difficult. Findings also showed a lack of holistic services which considered the totality of the justice involved individuals' experiences inclusive of their familial, systemic, traumatic experiences which governs their motivation, trust, confidence and prioritization. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2024
282. Mainstream and Special Schools' Use of Well-Being Programmes: A Regional Survey
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Atiyya Nisar, Richard P. Hastings, Richard C. Watkins, and Sharon Williams
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The incorporation of mental well-being provision into school curricula is increasingly the focus of government policy in the UK and internationally. However, it is not clear what well-being programmes schools provide to pupils, and how these programmes are delivered. The current study was an online survey to assess the use of whole-school well-being programmes in primary schools in North Wales. Normalisation Process Theory was utilised as a framework to assess normalisation of the well-being programmes. One-hundred and fifty-one schools in North Wales responded to the survey. The mean number of whole-school well-being programmes utilised by schools was 4.59, and nine of the 10 most frequently used programmes had little or no associated evidence base. The well-being programmes were generally perceived as normalised (i.e. everyday practice) by respondents. Implications for future practice are discussed, including the need to support schools to identify and implement evidence-based mental well-being provision.
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- 2024
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283. Including Students with Autism within the PBIS Framework: Recommendations for Research and Research-Informed Practice
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Laci Watkins, Susan White, Sara McDaniel, Megan Fedewa, Daniel Cohen, and Rajesh Kana
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There is increased focus on narrowing the research-to-practice gap in education for students with autism. Positive Behavior Interventions and Supports (PBIS) is an evidence-based and widely implemented framework designed to improve outcomes for all students; however, relatively little attention has focused specifically on using the PBIS framework to guide intervention and assessment for autistic students. This commentary's purpose is to describe the utility of PBIS as a viable school-based model for the use of evidence-based practice (EBP) in autism. We aim to demonstrate how EBP for students with autism may be integrated within the PBIS framework, discuss critical concerns for students with autism within this model, and provide suggestions for future research and practice on improving educators' capacity to implement EBP for this student population.
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- 2024
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284. Examining Interactions between Dominant Discourses and Engineering Educational Concepts in Teachers' Pedagogical Reasoning
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Natalie De Lucca, Jessica Watkins, Rebecca D. Swanson, and Merredith Portsmore
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Background: Engineering's introduction into K-12 classrooms has been purported to support meaningful and inclusive learning environments. However, teachers must contend with dominant discourses embedded in US schooling that justify inequitable distributions of resources. Purpose: Drawing on Gee's notion of discourses, we examine how teachers incorporate language legitimizing socially and culturally constructed values and beliefs. In particular, we focus on the discourse of ability hierarchy--reflecting dominant values of sorting and ranking students based on perceived academic abilities--and the discourse of individual blame--reflecting dominant framings of educational problems as solely the responsibility of individual students or families. We aim to understand how these discourses surface in teachers' reasoning about teaching engineering. Method: We interviewed 15 teachers enrolled in an online graduate program in engineering education. Utilizing critical discourse analysis, we analyzed how teachers drew on discourses of blame and ability hierarchy when reasoning about problems of practice in engineering. Results: Teachers drew on engineering education concepts to reinforce dominant discourses (echoing specific language and preserving given roles) as well as to disrupt (utilizing different language or roles that [implicitly] challenge) dominant discourses. Importantly, teachers could also retool discourses of ability hierarchy (arguing for a more equitable distribution of resources but problematically preserving the values of ranking and sorting students). Conclusions: K-12 schooling's sociohistorical context can shape how teachers make sense of engineering in ways that implicate race, gender, disability, and language, suggesting a need to grapple with how discourses from schooling--and engineering culture--maintain marginalizing environments for students.
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- 2024
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285. Can a Tablet Game That Boosts Kindergarten Phonics Advance 1st Grade Reading?
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Cassandra Potier Watkins and Stanislas Dehaene
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We report the effectiveness of using the tablet-game Kalulu Phonics immediately after intervention in kindergarten and on national evaluations the year after. In a previous intervention testing the software with 1st graders, fluency and comprehension were boosted, but only when used in concert with reading instruction at the start of the year. Here, we asked whether a similar intervention would be more efficient if it started a year earlier, in kindergarten. Forty classes (1092 = children) were randomized into playing Kalulu Phonics or the matched Kalulu Numbers control game for the first half of the year, with reversed assignments in the second half. Ten non-randomized business-as-usual classes also participated. In a cross-over effect, children who used the phonics version improved in letter naming, grapheme-phoneme correspondence (GPC) matching and fluency. Students with the number version improved in number knowledge. In a longitudinal follow-up, all intervention participants maintained an advantage in phoneme awareness and GPC matching at the start of 1st grade, but this advantage failed to translate into school literacy gains by mid-year. No longitudinal benefits were found for numbers. Our results support using tablet-based aids in spurring early reading skills but question the possibility that a short-term intervention may address the challenges of long-term educational goals.
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- 2024
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286. Understanding the Characteristics of Mathematical Knowledge for Teaching Algebra in High Schools and Community Colleges
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Inah Ko, Vilma Mesa, Irene Duranczyk, Patricio Herbst, Nidhi Kohli, April Ström, and Laura Watkins
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In this paper, we examine the relationships between teachers' subject matter preparation and experience in teaching and their performance on an instrument measuring mathematical knowledge for teaching Algebra 1. We administered the same instrument to two different samples of teachers-high school practicing teachers and community college faculty--who teach the same algebra content in different levels of institutions, and we compared the performance of the two different samples and the relationships between the measured knowledge and their educational and teaching background across the samples. The comparison suggested that the community college faculty possess a higher level of mathematical knowledge for teaching Algebra 1 than high school teachers. The subsequent analyses using the Multiple Indicator Multiple Causes (MIMIC) models based on our hypothesis on the factors contributing to the differences in the knowledge between the two teacher samples suggest that experience teaching advanced algebra courses has positive effects on the mathematical knowledge for teaching Algebra 1 in both groups. Highlighting the positive effect of algebra-based teaching experience on test performance, we discuss the implications of the impact of subject specific experience in teaching on teachers' mathematical content knowledge for teaching.
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- 2024
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287. Techne and Technology: Young Men, Literacy and the Facility to Write
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Megan Watkins
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With the fetishisation of computer technologies in education, the older sense of technology as pertaining to skill, what the Greeks termed 'techne', seems to have slipped from view. Technology is generally equated with the object itself rather than the facility to use it. A skill such as writing, for example, is rarely considered a technology and yet it is a vital tool for communication that aids understanding. Writing is also a technology that is framed in particular ways in relation to boys and young men. With constant concerns over 'boys' literacy', it is generally viewed as a 'feminine' activity. Drawing on interviews with a group of young men -- all proficient writers reflecting on their schooling -- this article examines their perspectives on writing and broader engagement with different technologies. In particular, it considers how writing by hand can promote forms of embodied cognition and the affordances this provides.
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- 2024
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288. Evaluating the Usefulness of a Wordless Picture Book for Adults with Intellectual Disabilities about the COVID-19 Vaccination Programme Using Co-Production: The CAREVIS Study
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Helena Wythe, Raj Attavar, Julia Jones, Jackie Kelly, Claire Palmer, Louise Jenkins, Romanie Dekker, Debra Fearns, Scott Watkins, Anne Hunt, and Natalie Pattison
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Aim: To explore the usefulness of a co-designed wordless book showing processes of receiving COVID-19 vaccines designed by, and for, adults with intellectual disabilities. Methods: A qualitative evaluation of the resource using mixed methods. Semi-structured interviews were conducted with people with intellectual disabilities, carers and health professionals about resource content, and use. This was analysed thematically. A survey was circulated to intellectual disabilities networks to understand resource need, use, sharing and content. Results: Understanding the COVID-19 vaccine was a process, not a single event using one resource. A visual resource had a place in facilitating conversations about vaccines between people with intellectual disabilities and carers. Differing perspectives were expressed regarding personal needs, existing awareness of vaccine programmes and communication preferences. Changes were suggested to improve the suggested storyline and relevance around COVID-19 restrictions changing. Conclusion: A visual resource may help conversations about the COVID-19 vaccine for people with intellectual disabilities.
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- 2024
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289. Socio-Demographic Factors and COVID-19 Experiences Predict Perceived Social Support and Social Media Engagement among College Students in the U.S.
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Nicole K. Watkins and Royette T. Dubar
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Objective: This study examined socio-demographic characteristics and COVID-19 experiences as concurrent predictors of perceived familial and friend social support, social media use, and socio-emotional motives for electronic communication during the COVID-19 pandemic among college students. Participants: Participants were 619 emerging adults (18-29-year-olds) currently enrolled at, or recently graduated from, a U.S.-based college or university ("Mean age" = 21.8, SD = 2.2; 64% female; 60% Non-Hispanic White). Methods: Online surveys were administered between May and June 2020. A path analysis model was conducted to examine the concurrent associations between socio-demographic factors, COVID-19-related experiences, social media/electronic engagement, and perceived social support. Results: Findings indicated significant differences in perceived social support, social media use, and socio-emotional motives for electronic communication as a function of gender, race, sexual orientation, first-generation status, and relationship status. Conclusions: Our findings highlight the role of both individual and situational differences in interpersonal functioning and demonstrate how college students differently engaged with social media for socio-emotional purposes during the COVID-19 pandemic.
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- 2024
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290. #Passfailnation: An Analysis of Master's Students' Pass/Fail Grade Use, Characteristics, and Academic Performance during the COVID-19 Pandemic
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Crystal Watkins Williams
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Access to pass/fail grading was liberalized for courses designed to be delivered in-person but moved online due to social distancing caused by the COVID-19 pandemic at many universities in the spring 2020 semester. There was little research to inform liberalizing access to pass/fail grading as a tool to support student performance and persistence during times of disruption, and concerns were raised about the academic performance and retention of students who made use of this grading option. This quantitative study, grounded in self-determination theory, examined academic and student characteristics of 100 master's degree students who took at least one pass/fail graded course during the spring 2020 semester to explore the direction and strength of relationships between the use of pass/fail grading, student characteristics, and academic performance. The results did not reveal decreased performance or persistence related to the use of the pass/fail grading. For students who took at least one course for pass/fail grading in the spring 2020 semester, there was no significant difference in the spring 2020 semester grade point average by race/ethnicity but there was a significant difference in the cumulative grade point average at graduation between Black and White graduates. No significant differences in semester grade point average or cumulative grade point average were found between men and women or among academic programs. Additionally, no significant relationships were found between the number of semesters or frequency of use in each semester of the pass/fail option and grade point average or student characteristics. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2024
291. Interactive Oral Assessment Case Studies: An Innovative, Academically Rigorous, Authentic Assessment Approach
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Monica Ward, Fiona O'Riordan, Danielle Logan-Fleming, Dervila Cooke, Tara Concannon-Gibney, Marina Efthymiou, and Niamh Watkins
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Assessment is a central feature of teaching and learning. It is both complex and challenging in ordinary times, and these aspects are magnified in an online learning environment. Given its central role, it is crucial that its design and purpose is rigorous and robust. This paper presents justification for using interactive oral assessment as an online, innovative, authentic assessment approach that prepares students for professional life, combats plagiarism and promotes academic integrity. It shares findings through four brief case study examples of using interactive oral assessments in computing, education, French literature, and aviation. This study also demonstrates the value of a Community of Practice in developing expertise, confidence, and resources to support the effective application of interactive oral assessment.
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- 2024
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292. 'They Have Shown Me It Is Possible to Thrive within STEM': Incorporating Learning Assistants in General Chemistry Enhances Student Belonging and Confidence
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Katherine A. Clements, Cristina D. Zepeda, Allison Leich Hilbun, Tara Todd, Thomas P. Clements, Heather J. Johnson, Jessica Watkins, Katherine L. Friedman, and Cynthia J. Brame
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Students often experience social and psychological barriers to success in General Chemistry, which is a key gateway to many students' science pathways. Learning assistants (LAs) have the potential to reduce these barriers and to strengthen students' sense of belonging in General Chemistry and STEM more broadly. Here, we used a 17-item Likert scale to determine whether incorporating LAs into General Chemistry I and II enhances students' sense of belonging in these courses. The incorporation of LAs into General Chemistry I had a significant positive effect and a medium to large effect size for students in all student groups examined: women and men; students in both racially and ethnically underrepresented and well-represented groups; first- and continuing-generation students. In General Chemistry II, similar results were observed for women and men; students in well-represented racial and ethnic groups; continuing-generation students. Further, we asked students to reflect on the impact that working with LAs had on their sense of belonging in STEM and confidence in talking about science. Sixty percent of students indicated that working with LAs had a positive impact on their STEM belonging, with five themes describing LA impacts: reducing isolation, serving as inspirational role models, providing mentoring, increasing opportunities for engagement and confidence building, and serving as accessible and approachable sources of support. Sixty-one percent of students also indicated that working with LAs increased their confidence in talking about science, with three themes emerging: fostering an environment with a lower risk of negative judgment, providing increased opportunities for feedback, and supporting students as they practiced their growing skills. Together, these results indicate that LAs can be an important means to reduce social and psychological barriers for students in gateway science courses, increasing their sense that they belong to the class and STEM more broadly.
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- 2023
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293. Cardiac fibroblast BAG3 regulates TGFBR2 signaling and fibrosis in dilated cardiomyopathy
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Wang, Bryan Z., Morsink, Margaretha A.J., Kim, Seong Won, Luo, Lori J., Zhang, Xiaokan, Soni, Rajesh Kumar, Lock, Roberta I., Rao, Jenny, Kim, Youngbin, Zhang, Anran, Neyazi, Meraj, Gorham, Joshua M., Kim, Yuri, Brown, Kemar, DeLaughter, Daniel M., Zhang, Qi, McDonough, Barbara, Watkins, Josephine M., Cunningham, Katherine M., Oudit, Gavin Y., Fine, Barry M., Seidman, Christine E., Seidman, Jonathan G., and Vunjak-Novakovic, Gordana
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Cardiomyopathy, Dilated -- Risk factors -- Development and progression -- Care and treatment ,Transforming growth factors -- Physiological aspects -- Health aspects ,Molecular chaperones -- Physiological aspects -- Health aspects ,Health care industry - Abstract
Loss of Bcl2-associated athanogene 3 (BAG3) is associated with dilated cardiomyopathy (DCM). BAG3 regulates sarcomere protein turnover in cardiomyocytes; however, the function of BAG3 in other cardiac cell types is understudied. In this study, we used an isogenic pair of BAG3-knockout and wild-type human induced pluripotent stem cells (hiPSCs) to interrogate the role of BAG3 in hiPSC-derived cardiac fibroblasts (CFs). Analysis of cell type- specific conditional knockout engineered heart tissues revealed an essential contribution of CF BAG3 to contractility and cardiac fibrosis, recapitulating the phenotype of DCM. In [BAG3.sup.-/-] CFs, we observed an increased sensitivity to TGF-[beta] signaling and activation of a fibrogenic response when cultured at physiological stiffness (8 kPa). Mechanistically, we showed that loss of BAG3 increased transforming growth factor-[beta] receptor 2 (TGFBR2) levels by directly binding TGFBR2 and mediating its ubiquitination and proteasomal degradation. To further validate these results, we performed single-nucleus RNA sequencing of cardiac tissue from DCM patients carrying pathogenic BAG3 variants. BAG3 pathogenic variants increased fibrotic gene expression in CFs. Together, these results extend our understanding of the roles of BAG3 in heart disease beyond the cardiomyocyte-centric view and highlight the ability of tissue-engineered hiPSC models to elucidate cell type-specific aspects of cardiac disease., Introduction Bcl2-associated athanogene 3 (BAG3) is a co-chaperone protein highly expressed in heart and skeletal muscle. Initial studies demonstrated early lethality in homozygous Bag3-knockout mice (1). Since then, BAG3 has [...]
- Published
- 2025
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294. Dysregulated Treg repair responses lead to chronic rejection after heart transplantation
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Warunek, Jordan J.P., Fan, Lu, Zhang, Xue, Wang, Sihua, Sanders, Steven M., Li, Tengfang, Mathews, Lisa R., Dwyer, Gaelen K., Wood-Trageser, Michelle A., Traczek, Stephanie, Lesniak, Andrew, Baron, Kassandra, Spencer, Hailey, Saba, Johnny Bou, Colon, Emmanuel Leon, Tabib, Tracy, Lafyatis, Robert, Ross, Mark A., Demetris, Anthony J., Watkins, Simon C., Webber, Steven A., Abou-Daya, Khodor I., and Turnquist, Heth R.
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T cells -- Physiological aspects -- Health aspects ,RNA sequencing -- Methods ,Graft rejection -- Development and progression ,Heart -- Transplantation ,Health care industry - Abstract
Chronic rejection (CR) after organ transplantation is alloimmune injury manifested by graft vascular remodeling and fibrosis that is resistant to immunosuppression. Single-cell RNA-Seq analysis of MHC class Il-mismatched (MHClI-mismatched) heart transplants developing chronic rejection identified graft IL-33 as a stimulator of tissue repair pathways in infiltrating macrophages and Tregs. Using IL-33-deficient donor mice, we show that graft fibroblast-derived IL-33 potently induced amphiregulin (Areg) expression by recipient Tregs. The assessment of clinical samples also confirmed increased expression of Areg by intragraft Tregs also during rejection. Areg is an EGF secreted by multiple immune cells to shape immunomodulation and tissue repair. In particular, Areg is proposed to play a major role in Treg- mediated muscle, epithelium, and nerve repair. Assessment of recipient mice with Treg-specific deletion of Areg surprisingly uncovered that Treg secretion of Areg contributed to CR. Specifically, heart transplants from recipients with Areg- deficient Tregs showed less fibrosis, vasculopathy, and vessel-associated fibrotic niches populated by recipient T cells. Mechanistically, we show that Treg-secreted Areg functioned to increase fibroblast proliferation. In total, these studies identify how a dysregulated repair response involving interactions between IL-33+ fibroblasts in the allograft and recipient Tregs contributed to the progression of CR., Introduction Solid organ transplants undergo initial damage from donor trauma, brain death, surgical manipulations, and ischemia-reperfusion injury (IRI). Throughout the life of the transplant, the recipient's immune responses to alloantigens [...]
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- 2024
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295. Precancerous Lesions of HPV-independent Vulvar Squamous Cell Carcinoma: Clinicopathologic Consideration of an Evolving Spectrum
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Watkins, Jaclyn and Fadare, Oluwole
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- 2024
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296. Peacebuilding, Patronage-Building, and Post-Conflict NGO Corruption: Barriers to Democratization in Anbar, Iraq
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Watkins, Jessica and Bardan, Falah Mubarak
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- 2024
297. Part VIII–Reconciling Africas, Identities, Diasporas: A Mirage in the Desert? African Women Directors at FESPACO
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Andrade-Watkins, Claire
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- 2024
298. Constraints on the Decay of Ta180m
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Arnquist, IJ, Avignone, FT, Barabash, AS, Barton, CJ, Bhimani, KH, Blalock, E, Bos, B, Busch, M, Buuck, M, Caldwell, TS, Christofferson, CD, Chu, P-H, Clark, ML, Cuesta, C, Detwiler, JA, Efremenko, Yu, Ejiri, H, Elliott, SR, Giovanetti, GK, Goett, J, Green, MP, Gruszko, J, Guinn, IS, Guiseppe, VE, Haufe, CR, Henning, R, Aguilar, D Hervas, Hoppe, EW, Hostiuc, A, Kim, I, Kouzes, RT, V., TE Lannen, Li, A, López-Castaño, JM, Massarczyk, R, Meijer, SJ, Meijer, W, Oli, TK, Paudel, LS, Pettus, W, Poon, AWP, Radford, DC, Reine, AL, Rielage, K, Rouyer, A, Ruof, NW, Schaper, DC, Schleich, SJ, Smith-Gandy, TA, Tedeschi, D, Thompson, JD, Varner, RL, Vasilyev, S, Watkins, SL, Wilkerson, JF, Wiseman, C, Xu, W, Yu, C-H, Alves, DSM, Hebenstiel, L, and Ramani, H
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Nuclear and Plasma Physics ,Particle and High Energy Physics ,Synchrotrons and Accelerators ,Physical Sciences ,Affordable and Clean Energy ,Majorana Collaboration ,Mathematical Sciences ,Engineering ,General Physics ,Mathematical sciences ,Physical sciences - Abstract
^{180m}Ta is a rare nuclear isomer whose decay has never been observed. Its remarkably long lifetime surpasses the half-lives of all other known β and electron capture decays due to the large K-spin differences and small energy differences between the isomeric and lower-energy states. Detecting its decay presents a significant experimental challenge but could shed light on neutrino-induced nucleosynthesis mechanisms, the nature of dark matter, and K-spin violation. For this study, we repurposed the Majorana Demonstrator, an experimental search for the neutrinoless double-beta decay of ^{76}Ge using an array of high-purity germanium detectors, to search for the decay of ^{180m}Ta. More than 17 kg, the largest amount of tantalum metal ever used for such a search, was installed within the ultralow-background detector array. In this Letter, we present results from the first year of Ta data taking and provide an updated limit for the ^{180m}Ta half-life on the different decay channels. With new limits up to 1.5×10^{19} yr, we improved existing limits by 1-2 orders of magnitude which are the most sensitive searches for a single β and electron capture decay ever achieved. Over all channels, the decay can be excluded for T_{1/2}
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- 2023
299. Dual carbonate clumped isotopes (Δ47-Δ48) constrains kinetic effects and timescales in peridotite-associated springs at the Cedars, Northern California
- Author
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Parvez, Zeeshan A, Lucarelli, Jamie K, Matamoros, Irvin W, Rubi, Joshua, Miguel, Kevin, Elliott, Ben, Flores, Randy, Ulrich, Robert N, Eagle, Robert A, Watkins, James M, Christensen, John N, and Tripati, Aradhna
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Earth Sciences ,Geochemistry ,Geology ,Life on Land ,Serpentinization ,Peridotite ,Clumped isotopes ,Carbon sequestration ,Kinetic isotope effects ,Physical Geography and Environmental Geoscience ,Geochemistry & Geophysics - Abstract
The Cedars is an area in Northern California with a chain of highly alkaline springs resulting from CO2-charged meteorological water interacting with a peridotite body. Serpentinization resulting from this interaction at depth leads to the sequestration of various carbonate minerals into veins accompanied by a release of Ca2+ and OH– enriched water to the surface, creating an environment which promotes rapid precipitation of CaCO3 at surface springs. This environment enables us to apply the recently developed Δ47-Δ48 dual clumped isotope analysis to probe kinetic isotope effects (KIEs) and timescales of CO2 transformation in a region with the potential for geological CO2 sequestration. We analyzed CaCO3 recovered from various localities and identified significant kinetic fractionations associated with CO2 absorption in a majority of samples, characterized by enrichment in Δ47 values and depletion in Δ48 values relative to equilibrium. Surface floes exhibited the largest KIEs (ΔΔ47: 0.163‰, ΔΔ48: −0.761‰). Surface floe samples begin to precipitate out of solution within the first hour of CO2 absorption, and the dissolved inorganic carbon (DIC) pool requires a residence time of >100 h to achieve isotopic equilibria. The Δ48/Δ47 slope of samples from the Cedars (−3.223 ± 0.519) is within the range of published theoretical values designed to constrain CO2 hydrolysis-related kinetic fractionation (−1.724 to −8.330). The Δ47/δ18O slope (−0.009 ± 0.001) and Δ47/δ13C slope (−0.009 ± 0.001) are roughly consistent with literature values reported from a peridotite in Oman of −0.006 ± 0.002 and −0.005 ± 0.002, respectively. The consistency of slopes in the multi-isotope space suggests the Δ47-Δ48 dual carbonate clumped isotope framework can be applied to study CO2-absorption processes in applied systems, including sites of interest for geological sequestration.
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- 2023
300. Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes.
- Author
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Carey, Megan, Dyson, Zoe, Ingle, Danielle, Amir, Afreenish, Aworh, Mabel, Chattaway, Marie, Chew, Ka, Crump, John, Feasey, Nicholas, Howden, Benjamin, Keddy, Karen, Maes, Mailis, Parry, Christopher, Van Puyvelde, Sandra, Webb, Hattie, Afolayan, Ayorinde, Alexander, Anna, Anandan, Shalini, Andrews, Jason, Ashton, Philip, Basnyat, Buddha, Bavdekar, Ashish, Bogoch, Isaac, Clemens, John, da Silva, Kesia, De, Anuradha, de Ligt, Joep, Diaz Guevara, Paula, Dolecek, Christiane, Dutta, Shanta, Ehlers, Marthie, Francois Watkins, Louise, Garrett, Denise, Godbole, Gauri, Gordon, Melita, Greenhill, Andrew, Griffin, Chelsey, Gupta, Madhu, Hendriksen, Rene, Heyderman, Robert, Hooda, Yogesh, Hormazabal, Juan, Ikhimiukor, Odion, Iqbal, Junaid, Jacob, Jobin, Jenkins, Claire, Jinka, Dasaratha, John, Jacob, Kang, Gagandeep, Kanteh, Abdoulie, Kapil, Arti, Karkey, Abhilasha, Kariuki, Samuel, Kingsley, Robert, Koshy, Roshine, Lauer, A, Levine, Myron, Lingegowda, Ravikumar, Luby, Stephen, Mackenzie, Grant, Mashe, Tapfumanei, Msefula, Chisomo, Mutreja, Ankur, Nagaraj, Geetha, Nagaraj, Savitha, Nair, Satheesh, Naseri, Take, Nimarota-Brown, Susana, Njamkepo, Elisabeth, Okeke, Iruka, Perumal, Sulochana, Pollard, Andrew, Pragasam, Agila, Qadri, Firdausi, Qamar, Farah, Rahman, Sadia, Rambocus, Savitra, Rasko, David, Ray, Pallab, Robins-Browne, Roy, Rongsen-Chandola, Temsunaro, Rutanga, Jean, Saha, Samir, Saha, Senjuti, Saigal, Karnika, Sajib, Mohammad, Seidman, Jessica, Shakya, Jivan, Shamanna, Varun, Shastri, Jayanthi, Shrestha, Rajeev, Sia, Sonia, Sikorski, Michael, Singh, Ashita, Smith, Anthony, Tagg, Kaitlin, Tamrakar, Dipesh, Tanmoy, Arif, Thomas, Maria, and Thomas, Mathew
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S. enterica serovar typhi ,antimicrobial resistance ,epidemiology ,genomics ,global health ,infectious disease ,microbiology ,typhoid conjugate vaccine ,typhoid fever ,Humans ,Salmonella typhi ,Typhoid Fever ,Anti-Bacterial Agents ,Travel ,Drug Resistance ,Bacterial ,Ciprofloxacin - Abstract
BACKGROUND: The Global Typhoid Genomics Consortium was established to bring together the typhoid research community to aggregate and analyse Salmonella enterica serovar Typhi (Typhi) genomic data to inform public health action. This analysis, which marks 22 years since the publication of the first Typhi genome, represents the largest Typhi genome sequence collection to date (n=13,000). METHODS: This is a meta-analysis of global genotype and antimicrobial resistance (AMR) determinants extracted from previously sequenced genome data and analysed using consistent methods implemented in open analysis platforms GenoTyphi and Pathogenwatch. RESULTS: Compared with previous global snapshots, the data highlight that genotype 4.3.1 (H58) has not spread beyond Asia and Eastern/Southern Africa; in other regions, distinct genotypes dominate and have independently evolved AMR. Data gaps remain in many parts of the world, and we show the potential of travel-associated sequences to provide informal sentinel surveillance for such locations. The data indicate that ciprofloxacin non-susceptibility (>1 resistance determinant) is widespread across geographies and genotypes, with high-level ciprofloxacin resistance (≥3 determinants) reaching 20% prevalence in South Asia. Extensively drug-resistant (XDR) typhoid has become dominant in Pakistan (70% in 2020) but has not yet become established elsewhere. Ceftriaxone resistance has emerged in eight non-XDR genotypes, including a ciprofloxacin-resistant lineage (4.3.1.2.1) in India. Azithromycin resistance mutations were detected at low prevalence in South Asia, including in two common ciprofloxacin-resistant genotypes. CONCLUSIONS: The consortiums aim is to encourage continued data sharing and collaboration to monitor the emergence and global spread of AMR Typhi, and to inform decision-making around the introduction of typhoid conjugate vaccines (TCVs) and other prevention and control strategies. FUNDING: No specific funding was awarded for this meta-analysis. Coordinators were supported by fellowships from the European Union (ZAD received funding from the European Unions Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 845681), the Wellcome Trust (SB, Wellcome Trust Senior Fellowship), and the National Health and Medical Research Council (DJI is supported by an NHMRC Investigator Grant [GNT1195210]).
- Published
- 2023
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