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In this work, experimental and data analysis procedures were developed and applied for studying amino acid crystals by means of X-ray phase measurements. It clearly demonstrated the sensitivity of invariant triplet phases to electronic charge distribution in D-alanine crystal, providing useful information on intermolecular forces for molecular dynamics calculations. Feasibility of phase measurements to investigate radiation damage mechanisms is also discussed on experimental and theoretical grounds., Comment: 13 pages and 12 figures, Journal of Applied Crystallography - XTOP 2016

In these proceedings we highlight the primary scientific goals and design of the WEAVE-LOFAR survey, which will use the new WEAVE spectrograph on the 4.2m William Herschel Telescope to provide the primary source of spectroscopic information for the LOFAR Surveys Key Science Project. Beginning in 2018, WEAVE-LOFAR will generate more than 10$^6$ R=5000 365-960 nm spectra of low-frequency selected radio sources, across three tiers designed to efficiently sample the redshift-luminosity plane, and produce a data set of enormous legacy value. The radio frequency selection, combined with the high multiplex and throughput of the WEAVE spectrograph, make obtaining redshifts in this way very efficient, and we expect that the redshift success rate will approach 100 per cent at $z < 1$. This unprecedented spectroscopic sample - which will be complemented by an integral field component - will be transformational in key areas, including studying the star formation history of the Universe, the role of accretion and AGN-driven feedback, properties of the epoch of reionisation, cosmology, cluster haloes and relics, as well as the nature of radio galaxies and protoclusters. Each topic will be addressed in unprecedented detail, and with the most reliable source classifications and redshift information in existence., Comment: 10 pages, 4 figures, proceedings of the SF2A conference, Lyon, 2016

The Compact Linear Collider (CLIC) is a multi-TeV high-luminosity linear e+e- collider under development. For an optimal exploitation of its physics potential, CLIC is foreseen to be built and operated in a staged approach with three centre-of-mass energy stages ranging from a few hundred GeV up to 3 TeV. The first stage will focus on precision Standard Model physics, in particular Higgs and top-quark measurements. Subsequent stages will focus on measurements of rare Higgs processes, as well as searches for new physics processes and precision measurements of new states, e.g. states previously discovered at LHC or at CLIC itself. In the 2012 CLIC Conceptual Design Report, a fully optimised 3 TeV collider was presented, while the proposed lower energy stages were not studied to the same level of detail. This report presents an updated baseline staging scenario for CLIC. The scenario is the result of a comprehensive study addressing the performance, cost and power of the CLIC accelerator complex as a function of centre-of-mass energy and it targets optimal physics output based on the current physics landscape. The optimised staging scenario foresees three main centre-of-mass energy stages at 380 GeV, 1.5 TeV and 3 TeV for a full CLIC programme spanning 22 years. For the first stage, an alternative to the CLIC drive beam scheme is presented in which the main linac power is produced using X-band klystrons., Comment: 57 pages, 27 figures, 12 tables, published as CERN Yellow Report. Updated version: Minor layout changes for print version

Automated label-free quantitative imaging of biological samples can greatly benefit high throughput diseases diagnosis. Digital holographic microscopy (DHM) is a powerful quantitative label-free imaging tool that retrieves structural details of cellular samples non-invasively. In off-axis DHM, a proper spatial filtering window in Fourier space is crucial to the quality of reconstructed phase image. Here we describe a region-recognition approach that combines shape recognition with an iterative thresholding to extracts the optimal shape of frequency components. The region recognition technique offers fully automated adaptive filtering that can operate with a variety of samples and imaging conditions. When imaging through optically scattering biological hydrogel matrix, the technique surpasses previous histogram thresholding techniques without requiring any manual intervention. Finally, we automate the extraction of the statistical difference of optical height between malaria parasite infected and uninfected red blood cells. The method described here pave way to greater autonomy in automated DHM imaging for imaging live cell in thick cell cultures.

Using polarized neutron diffraction and x-ray resonant magnetic scattering (XRMS) techniques, multiple phase transitions were revealed in an underdoped, non-superconducting Eu(Fe$_{1-x}$Ir$_{x}$)$_{2}$As$_{2}$ ($\mathit{x}$ = 0.06) single crystal. Compared with the parent compound EuFe$_{2}$As$_{2}$, the tetragonal-to-orthorhombic structural phase transition and the antiferromagnetic order of the Fe$^{2+}$ moments are significantly suppressed to $\mathit{T_{S}}$ = 111 (2) K and $\mathit{T_{N,Fe}}$= 85 (2) K by 6% Ir doping, respectively. In addition, the Eu$^{2+}$ spins order within the $\mathit{ab}$ plane in the A-type antiferromagnetic structure similar to the parent compound. However, the order temperature is evidently suppressed to $\mathit{T_{N,Eu}}$= 16.0 (5) K by Ir doping. Most strikingly, the XRMS measurements at the Ir $\mathit{L_{3}}$ edge demonstrates that the Ir 5$\mathit{d}$ states are also magnetically polarized, with the same propagation vector as the magnetic order of Fe. With $\mathit{T_{N,Ir}}$ = 12.0 (5) K, they feature a much lower onset temperature compared with $\mathit{T_{N,Fe}}$. Our observation suggests that the magnetism of the Eu sublattice has a considerable effect on the magnetic nature of the 5$\mathit{d}$ Ir dopant atoms and there exists a possible interplay between the localized Eu$^{2+}$ moments and the conduction $\mathit{d}$-electrons on the FeAs layers., Comment: 7 pages, 5 figures

KH2PO4 (KDP) belongs to the class of hydrogen-bonded ferroelectrics, whose paraelectric to ferroelectric phase transition is driven by the ordering of the protons in the hydrogen bonds. We demonstrate that forbidden reflections of KDP, when measured at an x-ray absorption edge, are highly sensitive to the asymmetry of proton configurations. The change of average symmetry caused by the "freezing" of the protons during the phase transition is clearly evidenced. In the paraelectric phase, we identify in the resonant spectra of the forbidden reflections a contribution related to the transient proton configurations in the hydrogen bonds, which violates the high average symmetry of the sites of the resonant atoms. The analysis of the temperature dependence reveals a change of relative probabilities of the different proton configurations. They follow the Arrhenius law, and the activation energies of polar and Slater configurations are 18.6 and 7.3 meV, respectively.

A sample of 576 X-ray selected LINERs was constructed by combining data from the 3XMM-DR4 and SDSS-DR7 catalogues. The sample was used to investigate the fraction of galaxies hosting a LINER, finding that the fraction is a strong function of both stellar mass and black hole mass (scaling to the power of 1.6 +/- 0.2 and 0.6 +/- 0.1 respectively) and that it rises close to unity at the highest black hole masses and lowest X-ray luminosities. After obtaining radio flux densities from the FIRST survey, the sample was also used to investigate the Fundamental Plane of black hole activity - a scale-invariant relationship between black hole mass, X-ray luminosity and radio luminosity that is believed to hold across at least nine orders of magnitude of mass. There are key advantages in using only LINERs for the derivation as these are the counterparts of the "low-hard" X-ray binaries for which the relationship is tightest. The Fundamental Plane was found to be log (L_R / erg/s) = (0.65 +/- 0.07) log (L_X / 10^42 erg/s) + (0.69 +/- 0.10) log (M_BH / 10^8 M_solar) + (38.35 +/- 0.10). The scatter around the plane was 0.73 +/- 0.03 dex, too large to suggest that the Fundamental Plane can be used as a tool to estimate black hole mass from the observables of X-ray and radio luminosity. The black hole mass scaling is sensitive to the slope of the mass - velocity dispersion relation and, in order to achieve consistency with X-ray binaries, the analysis favours a steep gradient for this relationship, as found in recent research.

We present a new single-ion endcap trap for high precision spectroscopy that has been designed to minimize ion-environment interactions. We describe the design in detail and then characterize the working trap using a single trapped 171 Yb ion. Excess micromotion has been eliminated to the resolution of the detection method and the trap exhibits an anomalous phonon heating rate of d /dt = 24 +30/-24 per second. The thermal properties of the trap structure have also been measured with an effective temperature rise at the ion's position of 0.14 +/- 0.14 K. The small perturbations to the ion caused by this trap make it suitable to be used for an optical frequency standard with fractional uncertainties below the 10^-18 level., Comment: 8 pages, 9 figures

In many of the high-precision optical frequency standards with trapped atoms or ions that are under development to date, the AC Stark shift induced by thermal radiation leads to a major contribution to the systematic uncertainty. We present an analysis of the inhomogeneous thermal environment experienced by ions in various types of ion traps. Finite element models which allow the determination of the temperature of the trap structure and the temperature of the radiation were developed for 5 ion trap designs, including operational traps at PTB and NPL and further optimized designs. Models were refined based on comparison with infrared camera measurement until an agreement of better than 10% of the measured temperature rise at critical test points was reached. The effective temperature rises of the radiation seen by the ion range from 0.8 K to 2.1 K at standard working conditions. The corresponding fractional frequency shift uncertainties resulting from the uncertainty in temperature are in the 10-18 range for optical clocks based on the Sr+ and Yb+ E2 transitions, and even lower for Yb+ E3, In+ and Al+. Issues critical for heating of the trap structure and its predictability were identified and design recommendations developed., Comment: 16 pages, submitted to Metrologia

The end of Dennard scaling combined with stagnation in architectural and compiler optimizations makes it challenging to achieve significant performance deltas. Solutions based solely in hardware or software are no longer sufficient to maintain the pace of improvements seen during the past few decades. In hardware, the end of single-core scaling resulted in the proliferation of multi-core system architectures, however this has forced complex parallel programming techniques into the mainstream. To further exploit physical resources, systems are becoming increasingly heterogeneous with specialized computing elements and accelerators. Programming across a range of disparate architectures requires a new level of abstraction that programming languages will have to adapt to. In software, emerging complex applications, from domains such as Big Data and computer vision, run on multi-layered software stacks targeting hardware with a variety of constraints and resources. Hence, optimizing for the power-performance (and resiliency) space requires experimentation platforms that offer quick and easy prototyping of hardware/software co-designed techniques. To that end, we present Project Beehive: A Hardware/Software co-designed stack for runtime and architectural research. Project Beehive utilizes various state-of-the-art software and hardware components along with novel and extensible co-design techniques. The objective of Project Beehive is to provide a modern platform for experimentation on emerging applications, programming languages, compilers, runtimes, and low-power heterogeneous many-core architectures in a full-system co-designed manner., Comment: New version of this paper

Increasing control of single photons enables new applications of photonic quantum-enhanced technology and further experimental exploration of fundamental quantum phenomena. Here, we demonstrate quantum logic using narrow linewidth photons that are produced under nearly perfect quantum control from a single ^87Rb atom strongly coupled to a high-finesse cavity. We use a controlled- NOT gate integrated into a photonic chip to entangle these photons, and we observe non-classical correlations between events separated by periods exceeding the travel time across the chip by three orders of magnitude. This enables quantum technology that will use the properties of both narrowband single photon sources and integrated quantum photonics, such as networked quantum computing, narrow linewidth quantum enhanced sensing and atomic memories., Comment: 5 pates, 3 figures

We used Precise Point Positioning, a well-established GPS carrier-phase frequency transfer method to perform a direct remote comparison of two optical frequency standards based on single laser-cooled $^{171}$Yb$^+$ ions operated at NPL, UK and PTB, Germany. At both institutes an active hydrogen maser serves as a flywheel oscillator; it is connected to a GPS receiver as an external frequency reference and compared simultaneously to a realization of the unperturbed frequency of the ${{}^2S_{1/2}(F=0)-{}^2D_{3/2}(F=2)}$ electric quadrupole transition in ${}^{171}$Yb${}^+$ via an optical femtosecond frequency comb. To profit from long coherent GPS link measurements we extrapolate over the various data gaps in the optical clock to maser comparisons which introduces maser noise to the frequency comparison but improves the uncertainty from the GPS link. We determined the total statistical uncertainty consisting of the GPS link uncertainty and the extrapolation uncertainties for several extrapolation schemes. Using the extrapolation scheme with the smallest combined uncertainty, we find a fractional frequency difference $y(\mathrm{PTB})-y(\mathrm{NPL})$ of $-1.3(1.2)\times 10^{-15}$ for a total measurement time of 67 h. This result is consistent with an agreement of both optical clocks and with recent absolute frequency measurements against caesium fountain clocks., Comment: 5 pages, 3 figures