24,034 results on '"van Dongen A"'
Search Results
202. Inflammation and oxidative stress markers in type 2 diabetes patients with Advanced Carotid atherosclerosis
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Louise Ménégaut, Aline Laubriet, Valentin Crespy, Damien Leleu, Thomas Pilot, Kevin Van Dongen, Jean-Paul Pais de Barros, Thomas Gautier, Jean-Michel Petit, Charles Thomas, Maxime Nguyen, Eric Steinmetz, and David Masson
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Diabetes ,Atherosclerosis ,Carotid ,Inflammation ,Arachidonic acid ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Type 2 diabetes mellitus (T2DM) is a major global health issue and a significant risk factor for atherosclerosis. Atherosclerosis in T2DM patients has been associated with inflammation, insulin resistance, hyperglycemia, dyslipidemia, and oxidative stress. Identifying molecular features of atherosclerotic plaques in T2DM patients could provide valuable insights into the pathogenesis of the disease. Methods The MASCADI (Arachidonic Acid Metabolism in Carotid Stenosis Plaque in Diabetic Patients) study aimed to investigate the increase of 2-arachidonoyl-lysophatidylcholine (2-AA-LPC) in carotid plaques from T2DM and control patients and to explore its association with plaque vulnerability as well as with blood and intra-plaque biomarkers altered during diabetes. Results In a population of elderly, polymedicated patients with advanced stage of atherosclerosis, we found that T2DM patients had higher systemic inflammation markers, such as high-sensitivity C-reactive protein (hsCRP) and IL-1β, higher levels of oxysterols, increased triglyceride levels, and decreased HDL levels as compared to control patients. Furthermore, 2-AA-LPC was significantly enriched in plaques from diabetic patients, suggesting its potential role in diabetic atherosclerosis. Interestingly, 2-AA-LPC was not associated with systemic markers related to diabetes, such as hsCRP, triglycerides, or HDL cholesterol. However, it was significantly correlated with the levels of inflammatory markers within the plaques such as lysophospholipids and 25-hydroxycholesterol, strengthening the link between local inflammation, arachidonic acid metabolism and diabetes. Conclusion Our study is in line with a key role for inflammation in the pathogenesis of diabetic atherosclerosis and highlights the involvement of 2-AA-LPC. Further research is needed to better understand the local processes involved in the alteration of plaque composition in T2DM and to identify potential therapeutic targets. Trial registration The MASCADI was registered on ClinicalTrials.gov (clinical registration number: NCT03202823).
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- 2023
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203. Baseline immunophenotypic profile of bone marrow leukemia cells in acute myeloid leukemia with nucleophosmin-1 gene mutation: a EuroFlow study
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Sergio Matarraz, Pilar Leoz, Ana Yeguas-Bermejo, Vincent van der Velden, Anne E. Bras, Jose I. Sánchez Gallego, Quentin Lecrevisse, Rosa Ayala-Bueno, Cristina Teodosio, Ignacio Criado, María González-González, Juan Flores-Montero, Alejandro Avendaño, María B. Vidriales, María C. Chillón, Teresa González, Ramón García-Sanz, María I. Prieto Conde, Neus Villamor, Laura Magnano, Enrique Colado, Paula Fernández, Edwin Sonneveld, Jan Philippé, Michaela Reiterová, Juan C. Caballero Berrocal, Francisco J. Diaz-Gálvez, Fernando Ramos, Julio Dávila Valls, Raquel Manjón Sánchez, Jackeline Solano Tovar, Xavier Calvo, Luis García Alonso, Leonor Arenillas, Sara Alonso, Ariana Fonseca, Covadonga Quirós Caso, Jacques J. M. van Dongen, and Alberto Orfao
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2023
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204. Unleashing NK- and CD8 T cells by combining monalizumab and trastuzumab for metastatic HER2-positive breast cancer: Results of the MIMOSA trial
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V.C.M. Geurts, L. Voorwerk, S. Balduzzi, R. Salgado, K. Van de Vijver, M.G.J. van Dongen, I. Kemper, I.A.M. Mandjes, M. Heuver, W. Sparreboom, J.B.A.G. Haanen, G.S. Sonke, H.M. Horlings, and M. Kok
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Breast cancer ,Immunotherapy ,Checkpoint blockade ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The large majority of patients with HER2-positive metastatic breast cancer (MBC) will eventually develop resistance to anti-HER2 therapy and die of this disease. Despite, relatively high levels of stromal tumor infiltrating lymphocytes (sTILs), PD1-blockade has only shown modest responses. Monalizumab targets the inhibitory immune checkpoint NKG2A, thereby unleashing NK- and CD8 T cells. We hypothesized that monalizumab synergizes with trastuzumab by promoting antibody-dependent cell-mediated cytotoxicity.In the phase II MIMOSA-trial, HER2-positive MBC patients were treated with trastuzumab and 750 mg monalizumab every two weeks. Following a Simon's two-stage design, 11 patients were included in stage I of the trial.Treatment was well tolerated with no dose-limiting toxicities. No objective responses were observed. Therefore, the MIMOSA-trial did not meet its primary endpoint.In summary, despite the strong preclinical rationale, the novel combination of monalizumab and trastuzumab does not induce objective responses in heavily pre-treated HER2-positive MBC patients.
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- 2023
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205. Leash Status of Approaching Dogs Mediates Escape Modality but Not Flight-Initiation Distance in a Common Urban Bird
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Skye C. Barnett, Wouter F. D. van Dongen, Roan D. Plotz, and Michael A. Weston
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human-wildlife conflict ,interspecific interactions ,social norms ,bird escape response ,Grallina cyanoleuca ,Canis familiaris ,Ecology ,QH540-549.5 ,Animal culture ,SF1-1100 - Abstract
Controversy exists around owned dogs’ impacts in public open spaces, with concerns about dogs’ impact on wildlife, including birds. Leashing dogs in public open spaces offers a tractable way of reducing dogs’ deleterious impacts on birds. Although dogs in public spaces are often unleashed, some dogs roam freely, whilst other unleashed dogs remain close to their owners. It is currently unknown whether birds can perceive and incorporate subtle differences in the leash status of approaching, but non-roaming, dogs into their escape decisions. We compare escape responses of a common urban bird, the magpie-lark Grallina cyanoleuca, in parks in Melbourne, Australia, to standardized approaches by a walker and a dog, which was either leashed or not leashed (but with the dog at the same distance from the walker). Flight-initiation distances, the distance between the lark and dog when escape commenced, did not vary between treatments. However, the unleashed dog evoked more intense responses (mostly flying away) than the leashed dog (mostly walking away). Thus, this species appears to perceive unleashed dogs as especially threatening, independent of their roaming behavior. Our findings suggest that leashing may be an effective way to reduce dog disturbance to wildlife, even for non-roaming dogs.
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- 2023
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206. Effectiveness, cost-effectiveness and return on investment of individual placement and support compared with traditional vocational rehabilitation for individuals with severe mental illness in the Netherlands: a nationwide implementation study
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Johanna Maria van Dongen, Philippe Delespaul, Johannes Anema, Miljana Vukadin, Wim Zwinkels, Marcel Spijkerman, and Marloes de Graaf-Zijl
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Public aspects of medicine ,RA1-1270 - Abstract
Objectives To assess the effectiveness, cost-effectiveness and return on investment of individual placement and support (IPS) implemented through a reimbursement strategy on a nationwide scale compared with traditional vocational rehabilitation (TVR) regarding sustainable participation in competitive employment in individuals with severe mental illness receiving sickness or disability benefits.Methods An observational study was conducted using administrative data regarding all Dutch individuals receiving sickness or disability benefits in the period 2012–2019. Exact matching and difference-in-difference fixed-effect estimations were performed to handle the non-randomised nature of the data. The matched sample consisted of 863 IPS and 16 466 TVR participants. The primary effect measure was the proportion of individuals having worked for at least 48 hours per month in competitive employment (ie, for 12 hours or more per week); the proportion of individuals having worked in competitive employment for at least 1 hour per month was also evaluated. Cost-effectiveness and return on investment were assessed from the societal perspective (intervention, sickness/disability benefit and healthcare costs) and payer perspective (sickness/disability benefit costs).Results IPS led to a statistically significant higher probability of being competitively employed for at least 12 hours per week of 3.7% points (95% CI 0.8% to 6.7%) to 7.5% points (95% CI 3.8% to 11.3%) and of being competitively employed for at least 1 hour per month of 4.7% points (95% CI 1.6% to 7.7%) to 8.9% points (95% CI 5.2 to 12.6%) from 6 to 36 months after starting the intervention. From the societal and payer perspective, IPS was—on average—less costly and more effective than TVR and return-on-investment estimates showed that IPS was—on average—cost saving (eg, societal perspective: ∆C: −364 (95% CI −3977 to 3249); ∆E: 0.104 (95% CI 0.046 to 0.164); benefit–cost ratio: 2.1 (95% CI −14.8 to 19.1)), but the uncertainty surrounding these estimates was large.Conclusions IPS implemented through a reimbursement strategy on a nationwide scale is more effective and potentially cost-effective than TVR in people with severe mental illness receiving sickness or disability benefits. Based on these results, the implementation of IPS by a wide scale reimbursement strategy could be promoted to enhance sustainable participation in competitive employment in these individuals. Future economic evaluations should strive for a more robust sample size and a long follow-up period.
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- 2024
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207. Intraintestinal fermentation of fructo- and galacto-oligosaccharides and the fate of short-chain fatty acids in humans
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Mara P.H. van Trijp, Melany Rios-Morales, Ben Witteman, Fentaw Abegaz, Albert Gerding, Ran An, Martijn Koehorst, Bernard Evers, Katja C.V. van Dongen, Erwin G. Zoetendal, Henk Schols, Lydia A. Afman, Dirk-Jan Reijngoud, Barbara M. Bakker, and Guido J. Hooiveld
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Human metabolism ,Science - Abstract
Summary: Consumption of fructo- (FOS) and galacto-oligosaccharides (GOS) has health benefits which have been linked in part to short-chain fatty acids (SCFA) production by the gut microbiota. However, detailed knowledge of this process in the human intestine is lacking. We aimed to determine the acute fermentation kinetics of a FOS:GOS mixture in healthy males using a naso-intestinal catheter for sampling directly in the ileum or colon. We studied the fate of SCFA as substrates for glucose and lipid metabolism by the host after infusion of 13C-SCFA. In the human distal ileum, no fermentation of FOS:GOS, nor SCFA production, or bacterial cross-feeding was observed. The relative composition of intestinal microbiota changed rapidly during the test day, which demonstrates the relevance of postprandial intestinal sampling to track acute responses of the microbial community toward interventions. SCFA were vividly taken up and metabolized by the host as shown by incorporation of 13C in various host metabolites.
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- 2024
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208. Comprehensive evaluation of smoking exposures and their interactions on DNA methylationResearch in context
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Thanh T. Hoang, Yunsung Lee, Daniel L. McCartney, Elin T.G. Kersten, Christian M. Page, Paige M. Hulls, Mikyeong Lee, Rosie M. Walker, Charles E. Breeze, Brian D. Bennett, Adam B. Burkholder, James Ward, Anne Lise Brantsæter, Ida H. Caspersen, Alison A. Motsinger-Reif, Marie Richards, Julie D. White, Shanshan Zhao, Rebecca C. Richmond, Maria C. Magnus, Gerard H. Koppelman, Kathryn L. Evans, Riccardo E. Marioni, Siri E. Håberg, Stephanie J. London, Bastiaan Heijmans, Peter ’t Hoen, Joyce van Meurs, Rick Jansen, Lude Franke, Dorret Boomsma, René Pool, Jenny van Dongen, Jouke Hottenga, Marleen van Greevenbroek, Coen Stehouwer, Carla van der Kallen, Casper Schalkwijk, Cisca Wijmenga, Sasha Zhernakova, Ettje Tigchelaar, P. Eline Slagboom, Marian Beekman, Joris Deelen, Diana Van Heemst, Jan Veldink, Leonard van den Berg, Cornelia van Duijn, Bert Hofman, Aaron Isaacs, André Uitterlinden, P. Mila Jhamai, Michael Verbiest, H. Eka Suchiman, Marijn Verkerk, Ruud van der Breggen, Jeroen van Rooij, Nico Lakenberg, Hailiang Mei, Maarten van Iterson, Michiel van Galen, Jan Bot, Dasha Zhernakova, Peter van ‘t Hof, Patrick Deelen, Irene Nooren, Matthijs Moed, Martijn Vermaat, René Luijk, Marc Bonder, Freerk van Dijk, Wibowo Arindrarto, Szymon Kielbasa, Morris Swertz, and Erik van Zwet
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Illumina EPIC array ,Epigenomics ,Secondhand smoke exposure ,Dietary intake ,Sex difference ,Smoking cessation ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Smoking impacts DNA methylation, but data are lacking on smoking-related differential methylation by sex or dietary intake, recent smoking cessation (
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- 2024
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209. Neuropsychological assessment of aggressive offenders: a Delphi consensus study
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Juliette C. Hutten, Joan E. van Horn, Sylco S. Hoppenbrouwers, Tim B. Ziermans, Hilde M. Geurts, The Forensic Neuropsychology Consortium, Hasanen Al-Taiar, Nadia Bolognini, Lisanne Breuer, Josanne van Dongen, William Garmoe, Beverly Griffor, Jochem Jansen, Frank Jonker, Mike van Kessel, Niki Kuin, Femke Kuipers, Gary de Man, Bernice Marcopulos, Jesse Meijers, Pieter Molleman, Milo Oudenhoven, Rajakumari Reddy, J. Rajeshwaran Jamuna, Cristina Scarpazza, Anna van der Schoot, Carmen Sergiou, Andrea Stracciari, Marijke Willems, and Stefano Zago
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neuropsychological tests ,forensic psychology ,aggression ,violence ,Delphi technique ,Research Domain Criteria (RDoC) ,Psychology ,BF1-990 - Abstract
ObjectiveThis study explores the intricate relationship between cognitive functioning and aggression, with a specific focus on individuals prone to reactive or proactive aggression. The purpose of the study was to identify important neuropsychological constructs and suitable tests for comprehending and addressing aggression.MethodsAn international panel of 32 forensic neuropsychology experts participated in this three-round Delphi study consisting of iterative online questionnaires. The experts rated the importance of constructs based on the Research Domain Criteria (RDoC) framework. Subsequently, they suggested tests that can be used to assess these constructs and rated their suitability.ResultsThe panel identified the RDoC domains Negative Valence Systems, Social Processes, Cognitive Systems and Positive Valence Systems as most important in understanding aggression. Notably, the results underscore the significance of Positive Valence Systems in proactive aggression and Negative Valence Systems in reactive aggression. The panel suggested a diverse array of 223 different tests, although they noted that not every RDoC construct can be effectively measured through a neuropsychological test. The added value of a multimodal assessment strategy is discussed.ConclusionsThis research advances our understanding of the RDoC constructs related to aggression and provides valuable insights for assessment strategies. Rather than suggesting a fixed set of tests, our study takes a flexible approach by presenting a top-3 list for each construct. This approach allows for tailored assessment to meet specific clinical or research needs. An important limitation is the predominantly Dutch composition of the expert panel, despite extensive efforts to diversify.
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- 2024
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210. SChuBERT: Scholarly Document Chunks with BERT-encoding boost Citation Count Prediction
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van Dongen, Thomas, Wenniger, Gideon Maillette de Buy, and Schomaker, Lambert
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Computer Science - Computation and Language ,Computer Science - Machine Learning ,I.2.7 - Abstract
Predicting the number of citations of scholarly documents is an upcoming task in scholarly document processing. Besides the intrinsic merit of this information, it also has a wider use as an imperfect proxy for quality which has the advantage of being cheaply available for large volumes of scholarly documents. Previous work has dealt with number of citations prediction with relatively small training data sets, or larger datasets but with short, incomplete input text. In this work we leverage the open access ACL Anthology collection in combination with the Semantic Scholar bibliometric database to create a large corpus of scholarly documents with associated citation information and we propose a new citation prediction model called SChuBERT. In our experiments we compare SChuBERT with several state-of-the-art citation prediction models and show that it outperforms previous methods by a large margin. We also show the merit of using more training data and longer input for number of citations prediction., Comment: Published at the First Workshop on Scholarly Document Processing, at EMNLP 2020. Minor corrections were made to the workshop version, including addition of color to Figures 1,2
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- 2020
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211. Conformance Checking of Mixed-paradigm Process Models
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van Dongen, Boudewijn, De Smedt, Johannes, Di Ciccio, Claudio, and Mendling, Jan
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Computer Science - Formal Languages and Automata Theory ,Computer Science - Computation and Language - Abstract
Mixed-paradigm process models integrate strengths of procedural and declarative representations like Petri nets and Declare. They are specifically interesting for process mining because they allow capturing complex behaviour in a compact way. A key research challenge for the proliferation of mixed-paradigm models for process mining is the lack of corresponding conformance checking techniques. In this paper, we address this problem by devising the first approach that works with intertwined state spaces of mixed-paradigm models. More specifically, our approach uses an alignment-based replay to explore the state space and compute trace fitness in a procedural way. In every state, the declarative constraints are separately updated, such that violations disable the corresponding activities. Our technique provides for an efficient replay towards an optimal alignment by respecting all orthogonal Declare constraints. We have implemented our technique in ProM and demonstrate its performance in an evaluation with real-world event logs., Comment: Accepted for publication in Information Systems
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- 2020
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212. Structure-Tags Improve Text Classification for Scholarly Document Quality Prediction
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Wenniger, Gideon Maillette de Buy, van Dongen, Thomas, Aedmaa, Eleri, Kruitbosch, Herbert Teun, Valentijn, Edwin A., and Schomaker, Lambert
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Computer Science - Computation and Language ,Computer Science - Machine Learning ,I.2.7 - Abstract
Training recurrent neural networks on long texts, in particular scholarly documents, causes problems for learning. While hierarchical attention networks (HANs) are effective in solving these problems, they still lose important information about the structure of the text. To tackle these problems, we propose the use of HANs combined with structure-tags which mark the role of sentences in the document. Adding tags to sentences, marking them as corresponding to title, abstract or main body text, yields improvements over the state-of-the-art for scholarly document quality prediction. The proposed system is applied to the task of accept/reject prediction on the PeerRead dataset and compared against a recent BiLSTM-based model and joint textual+visual model as well as against plain HANs. Compared to plain HANs, accuracy increases on all three domains. On the computation and language domain our new model works best overall, and increases accuracy 4.7% over the best literature result. We also obtain improvements when introducing the tags for prediction of the number of citations for 88k scientific publications that we compiled from the Allen AI S2ORC dataset. For our HAN-system with structure-tags we reach 28.5% explained variance, an improvement of 1.8% over our reimplementation of the BiLSTM-based model as well as 1.0% improvement over plain HANs., Comment: This new version of the paper brings the paper up-to-date with the improved paper, published at the First Workshop on Scholarly Document Processing, at EMNLP 2020. .Additionally, minor corrections were made including addition of color to Figures 1,2. The changes in comparison to the first arXiv version are substantial, including various additional results, and substantial improvements to the text
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- 2020
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213. The Epistemic Virtues of the Virtuous Theorist: On Albert Einstein and His Autobiography
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van Dongen, Jeroen
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Physics - History and Philosophy of Physics ,General Relativity and Quantum Cosmology ,High Energy Physics - Theory - Abstract
Albert Einstein's practice in physics and his philosophical positions gradually reoriented themselves from more empiricist towards rationalist viewpoints. This change accompanied his turn towards unified field theory and different presentations of himself, eventually leading to his highly programmatic Autobiographical Notes in 1949. Einstein enlisted his own history and professional stature to mold an ideal of a theoretical physicist who represented particular epistemic virtues and moral qualities. These in turn reflected the theoretical ideas of his strongly mathematical unification program and professed Spinozist beliefs., Comment: Published in: Jeroen van Dongen and Herman Paul (eds.), Epistemic Virtues in the Sciences and the Humanities (Boston Studies in the Philosophy and History of Science, vol. 321), Cham: Springer, 2017, pp. 63-77
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- 2020
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214. In Europe
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van Dongen, Jeroen
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Physics - History and Philosophy of Physics - Abstract
As the History of Science Society, which is based in America, holds its annual meeting in Utrecht, one of the key academic centers on the European continent, one may surmise that the field has returned home. Yet, this hardly reflects how today's world of scholarship is constituted: in the historiography of science, 'provincializing Europe' has become an important theme, while the field itself, as is the case across the world of academia, is centered around a predominantly American literature. At the same time, ever since historians of science have emancipated themselves from the sciences a long time ago, they often have appeared, in the public eye, to question rather than to seek to bolster the authority of the sciences. How has this situation come about, and what does it tell us about the world we live in today? What insight is sought and what public benefit is gained by the historical study of science? As we try to answer these questions, we will follow a number of key mid-twentieth century historians--Eduard Dijksterhuis, Thomas Kuhn and Martin Klein--in their Atlantic crossings. Their answers to debates on the constitution of the early modern scientific revolution or the novelty of the work of Max Planck will illustrate how notions of 'center' and 'periphery' have shifted--and what that may tell us about being 'in Europe' today., Comment: Elizabeth Paris Lecture, History of Science Society meeting, Utrecht, 23-27 July 2019
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- 2020
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215. Longitudinal multi-omics study reveals common etiology underlying association between plasma proteome and BMI trajectories in adolescent and young adult twins
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Drouard, Gabin, Hagenbeek, Fiona A., Whipp, Alyce M., Pool, René, Hottenga, Jouke Jan, Jansen, Rick, Hubers, Nikki, Afonin, Aleksei, Willemsen, Gonneke, de Geus, Eco J. C., Ripatti, Samuli, Pirinen, Matti, Kanninen, Katja M., Boomsma, Dorret I., van Dongen, Jenny, and Kaprio, Jaakko
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- 2023
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216. The effect of postoperative intravenous iron in anaemic, older cardiac surgery patients on disability-free survival (AGE ANEMIA study): study protocol for a multi-centre, double-blind, randomized, placebo-controlled trial
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Smoor, R. M., Rettig, T. C. D., Vernooij, L. M., Groenewegen, E. M., van Dongen, H. P. A., and Noordzij, P. G.
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- 2023
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217. Preoperative screening and prehabilitation strategies prior to ileocolic resection in patients with Crohn’s disease are not incorporated in routine care
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Bak, Michiel Thomas Jan, van Ruler, Oddeke, Stassen, Laurents, Ruiterkamp, Marit, Arkenbosch, Jeanine Hubertina Catharina, Dijkstra, Gerard, Campmans-Kuijpers, Maria Johanna Elisabeth, van Meeteren, Nico Leonard Ulrich, Bongers, Bart Chateau, Romberg-Camps, Mariëlle, van der Marel, Sander, Hoentjen, Frank, van Dongen, Koen Willem, West, Rachel, van der Woude, Janneke, and de Vries, Annemarie Charlotte
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- 2023
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218. Inflammation and oxidative stress markers in type 2 diabetes patients with Advanced Carotid atherosclerosis
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Ménégaut, Louise, Laubriet, Aline, Crespy, Valentin, Leleu, Damien, Pilot, Thomas, Van Dongen, Kevin, de Barros, Jean-Paul Pais, Gautier, Thomas, Petit, Jean-Michel, Thomas, Charles, Nguyen, Maxime, Steinmetz, Eric, and Masson, David
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- 2023
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219. Baseline immunophenotypic profile of bone marrow leukemia cells in acute myeloid leukemia with nucleophosmin-1 gene mutation: a EuroFlow study
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Matarraz, Sergio, Leoz, Pilar, Yeguas-Bermejo, Ana, van der Velden, Vincent, Bras, Anne E., Sánchez Gallego, Jose I., Lecrevisse, Quentin, Ayala-Bueno, Rosa, Teodosio, Cristina, Criado, Ignacio, González-González, María, Flores-Montero, Juan, Avendaño, Alejandro, Vidriales, María B., Chillón, María C., González, Teresa, García-Sanz, Ramón, Prieto Conde, María I., Villamor, Neus, Magnano, Laura, Colado, Enrique, Fernández, Paula, Sonneveld, Edwin, Philippé, Jan, Reiterová, Michaela, Caballero Berrocal, Juan C., Diaz-Gálvez, Francisco J., Ramos, Fernando, Dávila Valls, Julio, Manjón Sánchez, Raquel, Solano Tovar, Jackeline, Calvo, Xavier, García Alonso, Luis, Arenillas, Leonor, Alonso, Sara, Fonseca, Ariana, Quirós Caso, Covadonga, van Dongen, Jacques J. M., and Orfao, Alberto
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- 2023
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220. Author Correction: Sleep deprivation diminishes attentional control effectiveness and impairs flexible adaptation to changing conditions
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Whitney, Paul, Hinson, John M., Satterfield, Brieann C., Grant, Devon A., Honn, Kimberly A., and Van Dongen, Hans P. A.
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- 2023
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221. Correction: The effectiveness of immediate versus delayed tubal flushing with oil-based contrast in women with unexplained infertility (H2Oil-timing study): study protocol of a randomized controlled trial
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Kamphuis, D., Rosielle, K., van Welie, N., Roest, I., van Dongen, A. J. C. M., Brinkhuis, E. A., Bourdrez, P., Mozes, A., Verhoeve, H. R., van der Ham, D. P., Vrouenraets, F. P. J. M., Risseeuw, J. J., van de Laar, T., Janse, F., Hartog, J. E. den, de Hundt, M., Hooker, A. B., Huppelschoten, A. G., Pieterse, Q. D., Bongers, M. Y., Stoker, J., Koks, C. A. M., Lambalk, C. B., Hemingway, A., Li, W., Mol, B. W. J., Dreyer, K., and Mijatovic, V.
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- 2023
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222. Carriers of the p.P522R variant in PLCγ2 have a slightly more responsive immune system
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Diks, Annieck M., Teodosio, Cristina, de Mooij, Bas, Groenland, Rick J., Naber, Brigitta A. E., de Laat, Inge F., Vloemans, Sandra A., Rohde, Susan, de Jonge, Marien I., Lorenz, Linda, Horsten, Debbie, van Dongen, Jacques J. M., Berkowska, Magdalena A., and Holstege, Henne
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- 2023
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223. The effectiveness of immediate versus delayed tubal flushing with oil-based contrast in women with unexplained infertility (H2Oil-timing study): study protocol of a randomized controlled trial
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Kamphuis, D., Rosielle, K., van Welie, N., Roest, I., van Dongen, A. J.C.M., Brinkhuis, E. A., Bourdrez, P., Mozes, A., Verhoeve, H. R., van der Ham, D. P., Vrouenraets, F. P.J.M., Risseeuw, J. J., van de Laar, T., Janse, F., den Hartog, J. E., de Hundt, M., Hooker, A. B., Huppelschoten, A. G., Pieterse, Q. D., Bongers, M. Y., Stoker, J., Koks, C. A.M., Lambalk, C. B., Hemingway, A., Li, W., Mol, B. W.J., Dreyer, K., and Mijatovic, V.
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- 2023
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224. Effectiveness and cost-effectiveness of a progressive, individualised walking and education program for prevention of low back pain recurrence in adults: statistical analysis plan for the WalkBack randomised controlled trial
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Pocovi, Natasha C., Graham, Petra L., Lin, Chung-Wei Christine, French, Simon D., Latimer, Jane, Merom, Dafna, Tiedemann, Anne, Maher, Christopher G., van Dongen, Johanna M., Clavisi, Ornella, and Hancock, Mark J.
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- 2023
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225. Alcohol consumption and microvascular dysfunction: a J-shaped association: The Maastricht Study
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van der Heide, Frank C. T., Eussen, Simone J. P. M., Houben, Alfons J. H. M., Henry, Ronald M. A., Kroon, Abraham A., van der Kallen, Carla J. H., Dagnelie, Pieter C., van Dongen, Martien C. J. M., Berendschot, Tos T. J. M., Schouten, Jan S. A. G., Webers, Carroll A. B., van Greevenbroek, Marleen M. J., Wesselius, Anke, Schalkwijk, Casper G., Koster, Annemarie, Jansen, Jacobus F. A., Backes, Walter H., Beulens, Joline W. J., and Stehouwer, Coen D. A.
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- 2023
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226. LOFIT (Lifestyle front Office For Integrating lifestyle medicine in the Treatment of patients): a novel care model towards community-based options for lifestyle change—study protocol
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van Dijk, Marlinde L., te Loo, Leonie M., Vrijsen, Joyce, van den Akker-Scheek, Inge, Westerveld, Sanne, Annema, Marjan, van Beek, André, van den Berg, Jip, Boerboom, Alexander L., Bouma, Adrie, de Bruijne, Martine, Crasborn, Jeroen, van Dongen, Johanna M., Driessen, Anouk, Eijkelenkamp, Karin, Goelema, Nies, Holla, Jasmijn, de Jong, Johan, de Joode, Anoek, Kievit, Arthur, Klooster, Josine van’t, Kruizenga, Hinke, van der Leeden, Marike, Linders, Lilian, Marks-Vieveen, Jenny, Mulder, Douwe Johannes, Muller, Femmy, van Nassau, Femke, Nauta, Joske, Oostvogels, Suzanne, Oude Sogtoen, Jessica, van der Ploeg, Hidde P., Rijnbeek, Patrick, Schouten, Linda, Schuling, Rhoda, Serné, Erik H., Smuling, Simone, Soeters, Maarten R., Verhagen, Evert A. L. M., Zwerver, Johannes, Dekker, Rienk, van Mechelen, Willem, and Jelsma, Judith G. M.
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- 2023
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227. Author Correction: Common variants in Alzheimer’s disease and risk stratification by polygenic risk scores
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de Rojas, Itziar, Moreno-Grau, Sonia, Tesi, Niccolo, Grenier-Boley, Benjamin, Andrade, Victor, Jansen, Iris E., Pedersen, Nancy L., Stringa, Najada, Zettergren, Anna, Hernández, Isabel, Montrreal, Laura, Antúnez, Carmen, Antonell, Anna, Tankard, Rick M., Bis, Joshua C., Sims, Rebecca, Bellenguez, Céline, Quintela, Inés, González-Perez, Antonio, Calero, Miguel, Franco-Macías, Emilio, Macías, Juan, Blesa, Rafael, Cervera-Carles, Laura, Menéndez-González, Manuel, Frank-García, Ana, Royo, Jose Luís, Moreno, Fermin, Huerto Vilas, Raquel, Baquero, Miquel, Diez-Fairen, Mónica, Lage, Carmen, García-Madrona, Sebastián, García-González, Pablo, Alarcón-Martín, Emilio, Valero, Sergi, Sotolongo-Grau, Oscar, Ullgren, Abbe, Naj, Adam C., Lemstra, Afina W., Benaque, Alba, Pérez-Cordón, Alba, Benussi, Alberto, Rábano, Alberto, Padovani, Alessandro, Squassina, Alessio, de Mendonça, Alexandre, Arias Pastor, Alfonso, Kok, Almar A. L., Meggy, Alun, Pastor, Ana Belén, Espinosa, Ana, Corma-Gómez, Anaïs, Martín Montes, Angel, Sanabria, Ángela, DeStefano, Anita L., Schneider, Anja, Haapasalo, Annakaisa, Kinhult Ståhlbom, Anne, Tybjærg-Hansen, Anne, Hartmann, Annette M., Spottke, Annika, Corbatón-Anchuelo, Arturo, Rongve, Arvid, Borroni, Barbara, Arosio, Beatrice, Nacmias, Benedetta, Nordestgaard, Børge G., Kunkle, Brian W., Charbonnier, Camille, Abdelnour, Carla, Masullo, Carlo, Martínez Rodríguez, Carmen, Muñoz-Fernandez, Carmen, Dufouil, Carole, Graff, Caroline, Ferreira, Catarina B., Chillotti, Caterina, Reynolds, Chandra A., Fenoglio, Chiara, Van Broeckhoven, Christine, Clark, Christopher, Pisanu, Claudia, Satizabal, Claudia L., Holmes, Clive, Buiza-Rueda, Dolores, Aarsland, Dag, Rujescu, Dan, Alcolea, Daniel, Galimberti, Daniela, Wallon, David, Seripa, Davide, Grünblatt, Edna, Dardiotis, Efthimios, Düzel, Emrah, Scarpini, Elio, Conti, Elisa, Rubino, Elisa, Gelpi, Ellen, Rodriguez-Rodriguez, Eloy, Duron, Emmanuelle, Boerwinkle, Eric, Ferri, Evelyn, Tagliavini, Fabrizio, Küçükali, Fahri, Pasquier, Florence, Sanchez-Garcia, Florentino, Mangialasche, Francesca, Jessen, Frank, Nicolas, Gaël, Selbæk, Geir, Ortega, Gemma, Chêne, Geneviève, Hadjigeorgiou, Georgios, Rossi, Giacomina, Spalletta, Gianfranco, Giaccone, Giorgio, Grande, Giulia, Binetti, Giuliano, Papenberg, Goran, Hampel, Harald, Bailly, Henri, Zetterberg, Henrik, Soininen, Hilkka, Karlsson, Ida K., Alvarez, Ignacio, Appollonio, Ildebrando, Giegling, Ina, Skoog, Ingmar, Saltvedt, Ingvild, Rainero, Innocenzo, Rosas Allende, Irene, Hort, Jakub, Diehl-Schmid, Janine, Van Dongen, Jasper, Vidal, Jean-Sebastien, Lehtisalo, Jenni, Wiltfang, Jens, Thomassen, Jesper Qvist, Kornhuber, Johannes, Haines, Jonathan L., Vogelgsang, Jonathan, Pineda, Juan A., Fortea, Juan, Popp, Julius, Deckert, Jürgen, Buerger, Katharina, Morgan, Kevin, Fließbach, Klaus, Sleegers, Kristel, Molina-Porcel, Laura, Kilander, Lena, Weinhold, Leonie, Farrer, Lindsay A., Wang, Li-San, Kleineidam, Luca, Farotti, Lucia, Parnetti, Lucilla, Tremolizzo, Lucio, Hausner, Lucrezia, Benussi, Luisa, Froelich, Lutz, Ikram, M. Arfan, Deniz-Naranjo, M. Candida, Tsolaki, Magda, Rosende-Roca, Maitée, Löwenmark, Malin, Hulsman, Marc, Spallazzi, Marco, Pericak-Vance, Margaret A., Esiri, Margaret, Bernal Sánchez-Arjona, María, Dalmasso, Maria Carolina, Martínez-Larrad, María Teresa, Arcaro, Marina, Nöthen, Markus M., Fernández-Fuertes, Marta, Dichgans, Martin, Ingelsson, Martin, Herrmann, Martin J., Scherer, Martin, Vyhnalek, Martin, Kosmidis, Mary H., Yannakoulia, Mary, Schmid, Matthias, Ewers, Michael, Heneka, Michael T., Wagner, Michael, Scamosci, Michela, Kivipelto, Miia, Hiltunen, Mikko, Zulaica, Miren, Alegret, Montserrat, Fornage, Myriam, Roberto, Natalia, van Schoor, Natasja M., Seidu, Nazib M., Banaj, Nerisa, Armstrong, Nicola J., Scarmeas, Nikolaos, Scherbaum, Norbert, Goldhardt, Oliver, Hanon, Oliver, Peters, Oliver, Skrobot, Olivia Anna, Quenez, Olivier, Lerch, Ondrej, Bossù, Paola, Caffarra, Paolo, Dionigi Rossi, Paolo, Sakka, Paraskevi, Mecocci, Patrizia, Hoffmann, Per, Holmans, Peter A., Fischer, Peter, Riederer, Peter, Yang, Qiong, Marshall, Rachel, Kalaria, Rajesh N., Mayeux, Richard, Vandenberghe, Rik, Cecchetti, Roberta, Ghidoni, Roberta, Frikke-Schmidt, Ruth, Sorbi, Sandro, Hägg, Sara, Engelborghs, Sebastiaan, Helisalmi, Seppo, Botne Sando, Sigrid, Kern, Silke, Archetti, Silvana, Boschi, Silvia, Fostinelli, Silvia, Gil, Silvia, Mendoza, Silvia, Mead, Simon, Ciccone, Simona, Djurovic, Srdjan, Heilmann-Heimbach, Stefanie, Riedel-Heller, Steffi, Kuulasmaa, Teemu, del Ser, Teodoro, Lebouvier, Thibaud, Polak, Thomas, Ngandu, Tiia, Grimmer, Timo, Bessi, Valentina, Escott-Price, Valentina, Giedraitis, Vilmantas, Deramecourt, Vincent, Maier, Wolfgang, Jian, Xueqiu, Pijnenburg, Yolande A. L., Kehoe, Patrick Gavin, Garcia-Ribas, Guillermo, Sánchez-Juan, Pascual, Pastor, Pau, Pérez-Tur, Jordi, Piñol-Ripoll, Gerard, Lopez de Munain, Adolfo, García-Alberca, Jose María, Bullido, María J., Álvarez, Victoria, Lleó, Alberto, Real, Luis M., Mir, Pablo, Medina, Miguel, Scheltens, Philip, Holstege, Henne, Marquié, Marta, Sáez, María Eugenia, Carracedo, Ángel, Amouyel, Philippe, Schellenberg, Gerard D., Williams, Julie, Seshadri, Sudha, van Duijn, Cornelia M., Mather, Karen A., Sánchez-Valle, Raquel, Serrano-Ríos, Manuel, Orellana, Adelina, Tárraga, Lluís, Blennow, Kaj, Huisman, Martijn, Andreassen, Ole A., Posthuma, Danielle, Clarimón, Jordi, Boada, Mercè, van der Flier, Wiesje M., Ramirez, Alfredo, Lambert, Jean-Charles, van der Lee, Sven J., and Ruiz, Agustín
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- 2023
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228. (Cost-)effectiveness of a personalized multidisciplinary eHealth intervention for knee arthroplasty patients to enhance return to activities of daily life, work and sports – rationale and protocol of the multicentre ACTIVE randomized controlled trial
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Straat, A. Carlien, Maarleveld, Jantine M., Smit, Denise J. M., Visch, Lara, Hulsegge, Gerben, Huirne, Judith A. F., van Dongen, J. M., van Geenen, Rutger C., Kerkhoffs, Gino M. M. J., Anema, Johannes R., Coenen, Pieter, and Kuijer, P. Paul F. M.
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- 2023
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229. Elective adhesiolysis for chronic abdominal pain reduces long-term risk of adhesive small bowel obstruction
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van den Beukel, Barend A. W., Toneman, Masja K., van Veelen, Fleur, van Oud-Alblas, Marjolein Blusse, van Dongen, Koen, Stommel, Martijn W. J., van Goor, Harry, and ten Broek, Richard P. G.
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- 2023
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230. Quality of recovery after day care surgery with app-controlled remote monitoring: study protocol for a randomized controlled trial
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Thiel, B., Godfried, M. B., van Emst, M. E., Vernooij, L. M., van Vliet, L. M., Rumke, E., van Dongen, R. T. M., Gerrits, W., Koopman, J. S. H. A., and Kalkman, C. J.
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- 2023
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231. Measurement of person-centred consultation skills among healthcare practitioners: a systematic review of reviews of validation studies
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van Dongen, Anne, Stewart, Duncan, Garry, Jack, and McCambridge, Jim
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- 2023
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232. Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group
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Jia, Tianye, Chu, Congying, Liu, Yun, van Dongen, Jenny, Papastergios, Evangelos, Armstrong, Nicola J, Bastin, Mark E, Carrillo-Roa, Tania, den Braber, Anouk, Harris, Mathew, Jansen, Rick, Liu, Jingyu, Luciano, Michelle, Ori, Anil PS, Roiz Santiañez, Roberto, Ruggeri, Barbara, Sarkisyan, Daniil, Shin, Jean, Sungeun, Kim, Tordesillas Gutiérrez, Diana, van’t Ent, Dennis, Ames, David, Artiges, Eric, Bakalkin, Georgy, Banaschewski, Tobias, Bokde, Arun LW, Brodaty, Henry, Bromberg, Uli, Brouwer, Rachel, Büchel, Christian, Burke Quinlan, Erin, Cahn, Wiepke, de Zubicaray, Greig I, Ehrlich, Stefan, Ekström, Tomas J, Flor, Herta, Fröhner, Juliane H, Frouin, Vincent, Garavan, Hugh, Gowland, Penny, Heinz, Andreas, Hoare, Jacqueline, Ittermann, Bernd, Jahanshad, Neda, Jiang, Jiyang, Kwok, John B, Martin, Nicholas G, Martinot, Jean-Luc, Mather, Karen A, McMahon, Katie L, McRae, Allan F, Nees, Frauke, Papadopoulos Orfanos, Dimitri, Paus, Tomáš, Poustka, Luise, Sämann, Philipp G, Schofield, Peter R, Smolka, Michael N, Stein, Dan J, Strike, Lachlan T, Teeuw, Jalmar, Thalamuthu, Anbupalam, Trollor, Julian, Walter, Henrik, Wardlaw, Joanna M, Wen, Wei, Whelan, Robert, Apostolova, Liana G, Binder, Elisabeth B, Boomsma, Dorret I, Calhoun, Vince, Crespo-Facorro, Benedicto, Deary, Ian J, Hulshoff Pol, Hilleke, Ophoff, Roel A, Pausova, Zdenka, Sachdev, Perminder S, Saykin, Andrew, Wright, Margaret J, Thompson, Paul M, Schumann, Gunter, and Desrivières, Sylvane
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Biological Psychology ,Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Psychology ,Mental Health ,Neurosciences ,Genetics ,Human Genome ,Diabetes ,Neurodegenerative ,2.1 Biological and endogenous factors ,Aetiology ,Neurological ,Mental health ,CpG Islands ,DNA Methylation ,Epigenesis ,Genetic ,Epigenome ,Genome-Wide Association Study ,Humans ,Biological Sciences ,Medical and Health Sciences ,Psychology and Cognitive Sciences ,Psychiatry ,Clinical sciences ,Biological psychology ,Clinical and health psychology - Abstract
DNA methylation, which is modulated by both genetic factors and environmental exposures, may offer a unique opportunity to discover novel biomarkers of disease-related brain phenotypes, even when measured in other tissues than brain, such as blood. A few studies of small sample sizes have revealed associations between blood DNA methylation and neuropsychopathology, however, large-scale epigenome-wide association studies (EWAS) are needed to investigate the utility of DNA methylation profiling as a peripheral marker for the brain. Here, in an analysis of eleven international cohorts, totalling 3337 individuals, we report epigenome-wide meta-analyses of blood DNA methylation with volumes of the hippocampus, thalamus and nucleus accumbens (NAcc)-three subcortical regions selected for their associations with disease and heritability and volumetric variability. Analyses of individual CpGs revealed genome-wide significant associations with hippocampal volume at two loci. No significant associations were found for analyses of thalamus and nucleus accumbens volumes. Cluster-based analyses revealed additional differentially methylated regions (DMRs) associated with hippocampal volume. DNA methylation at these loci affected expression of proximal genes involved in learning and memory, stem cell maintenance and differentiation, fatty acid metabolism and type-2 diabetes. These DNA methylation marks, their interaction with genetic variants and their impact on gene expression offer new insights into the relationship between epigenetic variation and brain structure and may provide the basis for biomarker discovery in neurodegeneration and neuropsychiatric conditions.
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- 2021
233. Night shift schedule alters endogenous regulation of circulating cytokines
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Liu, Peter Y, Irwin, Michael R, Krueger, James M, Gaddameedhi, Shobhan, and Van Dongen, Hans PA
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Biomedical and Clinical Sciences ,Clinical Sciences ,Sleep Research ,Infectious Diseases ,Inflammatory and immune system ,Good Health and Well Being ,COVID-19 ,Cytokine storm ,Infectious disease ,Inflammation ,Night work ,Temporal regulation ,Neurosciences ,Biological psychology - Abstract
Night shift work is a risk factor for viral infection, suggesting that night shift schedules compromise host defense mechanisms. Prior studies have investigated changes in the temporal profiles of circulating cytokines important for priming and restraining the immune response to infectious challenges from night shift work, but not by way of a 24-h constant routine of continuous wakefulness devoid of behavioral or environmental influences. Hence the true endogenous pattern of cytokines, and the combined effect of sleep loss and circadian misalignment on these cytokines remains unknown. Here, 14 healthy young men and women underwent three days of either a simulated night shift or a simulated day shift schedule under dim light in a controlled in-laboratory environment. This was followed by a 24-h constant routine protocol during which venous blood was collected at 3-h intervals. Those who had been in the night shift schedule showed lower mean circulating TNF-α (t13 = -6.03, p
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- 2021
234. The potential impact of the COVID-19 pandemic on global antimicrobial and biocide resistance: an AMR Insights global perspective
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Ansari, Shamshul, Hays, John P, Kemp, Andrew, Okechukwu, Raymond, Murugaiyan, Jayaseelan, Ekwanzala, Mutshiene Deogratias, Ruiz Alvarez, Maria Josefina, Paul-Satyaseela, Maneesh, Iwu, Chidozie Declan, Balleste-Delpierre, Clara, Septimus, Ed, Mugisha, Lawrence, Fadare, Joseph, Chaudhuri, Susmita, Chibabhai, Vindana, Wadanamby, JM Rohini WW, Daoud, Ziad, Xiao, Yonghong, Parkunan, Thulasiraman, Khalaf, Yara, M’Ikanatha, Nkuchia M, van Dongen, Maarten BM, Barkema, Herman W, Strathdee, Steffanie, Benyeogor, Emmanuel, Ighodalo, Uzairue Leonard, Prasad, Kurcheti Pani, M, Carlos, Gu, Yoshiaki, Essack, Sabiha, de Silva, Dilan, Vellinga, Akke, Mommtaz Ghannam, Wagih, Tsoho, Najib Auwal, Sakeena, MHF, Ilenwabor, Rhoda, Shetty, Dhanuraj Raj, Ayebare, Arnold, Traore, Zoumana Isaac, Henry, Ola, Kiran, Amritanjali, Toro, Luisa Fernanda, Smail, Adil, Amulele, Anne, Founou, Luria Leslie, Sawant, Prathamesh S, Buregyeya, Esther, Castro-Sanchez, Enrique, Moreno-Morales, Javier, Izadjoo, Mina, Gori, Andrea, Goff, Debra, Blocker, Arielle, Forte, Giovanna, Tahir, Muhammad Farooq, Diggle, Mathew, Chakraborty, Dipanjan, Asamoah, Anita E, and Aberi, Humphrey
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Medical Microbiology ,Biomedical and Clinical Sciences ,Clinical Sciences ,Emerging Infectious Diseases ,Antimicrobial Resistance ,Prevention ,Biodefense ,Vaccine Related ,Infectious Diseases ,Infection ,Good Health and Well Being ,Global AMR Insights Ambassador Network ,Clinical sciences ,Medical microbiology ,Pharmacology and pharmaceutical sciences - Abstract
The COVID-19 pandemic presents a serious public health challenge in all countries. However, repercussions of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections on future global health are still being investigated, including the pandemic's potential effect on the emergence and spread of global antimicrobial resistance (AMR). Critically ill COVID-19 patients may develop severe complications, which may predispose patients to infection with nosocomial bacterial and/or fungal pathogens, requiring the extensive use of antibiotics. However, antibiotics may also be inappropriately used in milder cases of COVID-19 infection. Further, concerns such as increased biocide use, antimicrobial stewardship/infection control, AMR awareness, the need for diagnostics (including rapid and point-of-care diagnostics) and the usefulness of vaccination could all be components shaping the influence of the COVID-19 pandemic. In this publication, the authors present a brief overview of the COVID-19 pandemic and associated issues that could influence the pandemic's effect on global AMR.
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- 2021
235. Author’s Reply to the Letter of Van Boxem, Van Gaag, Van Zundert, and Kallewaard, Entitled ‘Response to Ter Meulen et al. Effect of Transforaminal Epidural Corticosteroid Injections in Acute Sciatica’
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Ter Meulen, Bastiaan C., van Dongen, Johanna M., Maas, Esther, van de Vegt, Marinus H., Haumann, Johan, Weinstein, Henry C., and Ostelo, Raymond
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- 2024
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236. Phenotypic Interindividual Differences in the Dynamic Structure of Sleep in Healthy Young Adults
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Kishi A and Van Dongen HPA
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polysomnography ,sleep stage transitions ,nrem/rem sleep cycles ,ultradian rhythm ,sleep phenotype. ,Psychiatry ,RC435-571 ,Neurophysiology and neuropsychology ,QP351-495 - Abstract
Akifumi Kishi,1– 3 Hans PA Van Dongen4,5 1Graduate School of Education, The University of Tokyo, Tokyo, Japan; 2Graduate School of Medicine, The University of Tokyo, Tokyo, Japan; 3Japan Science and Technology Agency, PRESTO, Saitama, Japan; 4Sleep and Performance Research Center, Washington State University, Spokane, WA, USA; 5Department of Translational Medicine and Physiology, Washington State University, Spokane, WA, USACorrespondence: Akifumi Kishi, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan, Tel +81-3-5841-3415, Fax +81-3-5841-3418, Email kishi@p.u-tokyo.ac.jpIntroduction: Evaluating the dynamic structure of sleep may yield new insights into the mechanisms underlying human sleep physiology.Methods: We analyzed data from a 12-day, 11-night, strictly controlled laboratory study with an adaptation night, 3 iterations of a baseline night followed by a recovery night after 36 h of total sleep deprivation, and a final recovery night. All sleep opportunities were 12 h in duration (22:00– 10:00) and recorded with polysomnography (PSG). The PSG records were scored for the sleep stages: rapid eye movement (REM) sleep; non-REM (NREM) stage 1 sleep (S1), stage 2 sleep (S2), and slow wave sleep (SWS); and wake (W). Phenotypic interindividual differences were assessed using indices of dynamic sleep structure – specifically sleep stage transitions and sleep cycle characteristics – and intraclass correlation coefficients across nights.Results: NREM/REM sleep cycles and sleep stage transitions exhibited substantial and stable interindividual differences that were robust across baseline and recovery nights, suggesting that mechanisms underlying the dynamic structure of sleep are phenotypic. In addition, the dynamics of sleep stage transitions were found to be associated with sleep cycle characteristics, with a significant relationship between the length of sleep cycles and the degree to which S2-to-W/S1 and S2-to-SWS transitions were in equilibrium.Discussion: Our findings are consistent with a model for the underlying mechanisms that involves three subsystems – characterized by S2-to-W/S1, S2-to-SWS, and S2-to-REM transitions – with S2 playing a hub-like role. Furthermore, the balance between the two subsystems within NREM sleep (S2-to-W/S1 and S2-to-SWS) may serve as a basis for the dynamic regulation of sleep structure and may represent a novel target for interventions aiming to improve sleep.Keywords: polysomnography, sleep stage transitions, NREM/REM sleep cycles, ultradian rhythm, sleep phenotype
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- 2023
237. Hydraulic suppression of basal glacier melt in sill fjords
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J. Nilsson, E. van Dongen, M. Jakobsson, M. O'Regan, and C. Stranne
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
Using a conceptual model, we examine how hydraulically controlled exchange flows in silled fjords affect the relationship between the basal glacier melt and the features of warm intermediate Atlantic Water (AW) outside the fjords. We show that an exchange flow can be forced to transit into the hydraulic regime if the AW interface height decreases, the AW temperature increases, or the production of glacially modified water is boosted by subglacial discharge. In the hydraulic regime, the heat transport across the sill becomes a rate-limiting factor for the basal melt, which is suppressed. An interplay between processes near the ice–ocean boundary and the hydraulically controlled exchange flow determines the melt dynamics, and the sensitivity of the basal melt to changes in the AW temperature is reduced. The model results are discussed in relation to observations from the Petermann, Ryder, and 79∘ N glaciers in northern Greenland.
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- 2023
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238. The Arabidopsis thaliana onset of leaf death 12 mutation in the lectin receptor kinase P2K2 results in an autoimmune phenotype
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Liming Zhao, Hao-Jie Wang, Patricia Dalcin Martins, Joost T. van Dongen, Anthony M. Bolger, Romy R. Schmidt, Hai-Chun Jing, Bernd Mueller-Roeber, and Jos H. M. Schippers
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Arabidopsis ,Salicylic acid ,Onset of leaf death ,Autoimmunity ,Receptor-like kinase ,Botany ,QK1-989 - Abstract
Abstract Background Plant immunity relies on the perception of immunogenic signals by cell-surface and intracellular receptors and subsequent activation of defense responses like programmed cell death. Under certain circumstances, the fine-tuned innate immune system of plants results in the activation of autoimmune responses that cause constitutive defense responses and spontaneous cell death in the absence of pathogens. Results Here, we characterized the onset of leaf death 12 (old12) mutant that was identified in the Arabidopsis accession Landsberg erecta. The old12 mutant is characterized by a growth defect, spontaneous cell death, plant-defense gene activation, and early senescence. In addition, the old12 phenotype is temperature reversible, thereby exhibiting all characteristics of an autoimmune mutant. Mapping the mutated locus revealed that the old12 phenotype is caused by a mutation in the Lectin Receptor Kinase P2-TYPE PURINERGIC RECEPTOR 2 (P2K2) gene. Interestingly, the P2K2 allele from Landsberg erecta is conserved among Brassicaceae. P2K2 has been implicated in pathogen tolerance and sensing extracellular ATP. The constitutive activation of defense responses in old12 results in improved resistance against Pseudomonas syringae pv. tomato DC3000. Conclusion We demonstrate that old12 is an auto-immune mutant and that allelic variation of P2K2 contributes to diversity in Arabidopsis immune responses.
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- 2023
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239. Impact of tides on calving patterns at Kronebreen, Svalbard – insights from three-dimensional ice dynamical modelling
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F. A. Holmes, E. van Dongen, R. Noormets, M. Pętlicki, and N. Kirchner
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
Understanding calving processes and their controls is of importance for reducing uncertainty in sea level rise estimates. The impact of tidal fluctuations and frontal melt on calving patterns has been researched through both modelling and observational studies but remains uncertain and may vary from glacier to glacier. In this study, we isolate various different impacts of tidal fluctuations on a glacier terminus to understand their influence on the timing of calving events in a model of Kronebreen, Svalbard, for the duration of 1 month. In addition, we impose a simplified frontal melt parameterisation onto the calving front in order to allow for an undercut to develop over the course of the simulations. We find that calving events show a tidal signal when there is a small or no undercut, but, after a critical point, undercut-driven calving becomes dominant and drowns out the tidal signal. However, the relationship is complex, and large calving events show a tidal signal even with a large modelled undercut. The modelled undercut sizes are then compared to observational profiles, showing that undercuts of up to ca. 25 m are plausible but with a more complex geometry being evident in observations than that captured in the model. These findings highlight the complex interactions occurring at the calving front of Kronebreen and suggest further observational data and modelling work is needed to fully understand the hierarchy of controls on calving.
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- 2023
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240. The effectiveness of immediate versus delayed tubal flushing with oil-based contrast in women with unexplained infertility (H2Oil-timing study): study protocol of a randomized controlled trial
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D. Kamphuis, K. Rosielle, N. van Welie, I. Roest, A. J.C.M. van Dongen, E. A. Brinkhuis, P. Bourdrez, A. Mozes, H. R. Verhoeve, D. P. van der Ham, F. P.J.M. Vrouenraets, J. J. Risseeuw, T. van de Laar, F. Janse, J. E. den Hartog, M. de Hundt, A. B. Hooker, A. G. Huppelschoten, Q. D. Pieterse, M. Y. Bongers, J. Stoker, C. A.M. Koks, C. B. Lambalk, A. Hemingway, W. Li, B. W.J. Mol, K. Dreyer, and V. Mijatovic
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Infertility ,Fallopian tubes ,Fertility work-up ,Tubal flushing ,Hysterosalpingography (HSG) ,Oil-based contrast medium ,Gynecology and obstetrics ,RG1-991 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In women with unexplained infertility, tubal flushing with oil-based contrast during hysterosalpingography leads to significantly more live births as compared to tubal flushing with water-based contrast during hysterosalpingography. However, it is unknown whether incorporating tubal flushing with oil-based contrast in the initial fertility work-up results to a reduced time to conception leading to live birth when compared to delayed tubal flushing that is performed six months after the initial fertility work-up. We also aim to evaluate the effectiveness of tubal flushing with oil-based contrast during hysterosalpingography versus no tubal flushing in the first six months of the study. Methods This study will be an investigator-initiated, open-label, international, multicenter, randomized controlled trial with a planned economic analysis alongside the study. Infertile women between 18 and 39 years of age, who have an ovulatory cycle, who are at low risk for tubal pathology and have been advised expectant management for at least six months (based on the Hunault prediction score) will be included in this study. Eligible women will be randomly allocated (1:1) to immediate tubal flushing (intervention) versus delayed tubal flushing (control group) by using web-based block randomization stratified per study center. The primary outcome is time to conception leading to live birth with conception within twelve months after randomization. We assess the cumulative conception rate at six and twelve months as two co-primary outcomes. Secondary outcomes include ongoing pregnancy rate, live birth rate, miscarriage rate, ectopic pregnancy rate, number of complications, procedural pain score and cost-effectiveness. To demonstrate or refute a shorter time to pregnancy of three months with a power of 90%, a sample size of 554 women is calculated. Discussion The H2Oil-timing study will provide insight into whether tubal flushing with oil-based contrast during hysterosalpingography should be incorporated in the initial fertility work-up in women with unexplained infertility as a therapeutic procedure. If this multicenter RCT shows that tubal flushing with oil-based contrast incorporated in the initial fertility work-up reduces time to conception and is a cost-effective strategy, the results may lead to adjustments of (inter)national guidelines and change clinical practice. Trial registration number The study was prospectively registered in International Clinical Trials Registry Platform (Main ID: EUCTR2018-004153-24-NL).
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- 2023
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241. Carriers of the p.P522R variant in PLCγ2 have a slightly more responsive immune system
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Annieck M. Diks, Cristina Teodosio, Bas de Mooij, Rick J. Groenland, Brigitta A. E. Naber, Inge F. de Laat, Sandra A. Vloemans, Susan Rohde, Marien I. de Jonge, Linda Lorenz, Debbie Horsten, Jacques J. M. van Dongen, Magdalena A. Berkowska, and Henne Holstege
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Phospholipase C gamma 2 ,PLCγ2 p.P522R ,PLCG2 rs72824905 ,Healthy aging ,Immunosenescence ,Flow cytometry ,Neurology. Diseases of the nervous system ,RC346-429 ,Geriatrics ,RC952-954.6 - Abstract
Abstract Background The rs72824905 single-nucleotide polymorphism in the PLCG2 gene, encoding the p.P522R residue change in Phospholipase C gamma 2 (PLCγ2), associates with protection against several dementia subtypes and with increased likelihood of longevity. Cell lines and animal models indicated that p.P522R is a functional hypermorph. We aimed to confirm this in human circulating peripheral immune cells. Methods We compared effects of p.P522R on immune system function between carriers and non-carriers (aged 59-103y), using in-depth immunophenotyping, functional B-cell and myeloid cell assays, and in vivo SARS-CoV-2 vaccination. Results In line with expectations, p.P522R impacts immune cell function only slightly, but it does so across a wide array of immune cell types. Upon B-cell stimulation, we observed increased PLCγ2 phosphorylation and calcium release, suggesting increased B-cell sensitivity upon antigen recognition. Further, p.P522R-carriers had higher numbers of CD20++CD21-CD24+ naive B cells and IgG1+ memory B cells. In myeloid cells, normalized ROS production was higher upon PLCγ2-dependent stimulation. On classical monocytes, CD33 levels were elevated. Furthermore, carriers expressed lower levels of allergy-related FcεRI on several immune cell subsets. Nevertheless, carriers and non-carriers had similar serological responses to SARS-CoV-2 vaccination. Conclusion The immune system from p.P522R-carriers is slightly more responsive to stimulation than in non-carriers.
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- 2023
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242. The story of a summit nucleus: hillslope boulders and their effect on erosional patterns and landscape morphology in the Chilean Coastal Cordillera
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E. Lodes, D. Scherler, R. van Dongen, and H. Wittmann
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Dynamic and structural geology ,QE500-639.5 - Abstract
While landscapes are broadly sculpted by tectonics and climate, on a catchment scale, sediment size can regulate hillslope denudation rates and thereby influence the location of topographic highs and valleys. In this work, we used in situ 10Be cosmogenic radionuclide analysis to measure the denudation rates of bedrock, boulders, and soil in three granitic landscapes with different climates in Chile. We hypothesize that bedrock and boulders affect differential denudation by denuding more slowly than the surrounding soil; the null hypothesis is that no difference exists between soil and boulder or bedrock denudation rates. To evaluate denudation rates, we present a simple model that assesses differential denudation of boulders and the surrounding soil by evaluating boulder protrusion height against a two-stage erosion model and measured 10Be concentrations of boulder tops. We found that hillslope bedrock and boulders consistently denude more slowly than soil in two out of three of our field sites, which have a humid and a semi-arid climate: denudation rates range from ∼5 to 15 m Myr−1 for bedrock and boulders and from ∼8 to 20 m Myr−1 for soil. Furthermore, across a bedrock ridge at the humid site, denudation rates increase with increasing fracture density. At our lower-sloping field sites, boulders and bedrock appear to be similarly immobile based on similar 10Be concentrations. However, in the site with a Mediterranean climate, steeper slopes allow for higher denudation rates for both soil and boulders (∼40–140 m Myr−1), while the bedrock denudation rate remains low (∼22 m Myr−1). Our findings suggest that unfractured bedrock patches and large hillslope boulders affect landscape morphology by inducing differential denudation in lower-sloping landscapes. When occurring long enough, such differential denudation should lead to topographic highs and lows controlled by bedrock exposure and hillslope sediment size, which are both a function of fracture density. We further examined our field sites for fracture control on landscape morphology by comparing fracture, fault, and stream orientations, with the hypothesis that bedrock fracturing leaves bedrock more susceptible to denudation. Similar orientations of fractures, faults, and streams further support the idea that tectonically induced bedrock fracturing guides fluvial incision and accelerates denudation by reducing hillslope sediment size.
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- 2023
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243. Measurement of person-centred consultation skills among healthcare practitioners: a systematic review of reviews of validation studies
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Anne van Dongen, Duncan Stewart, Jack Garry, and Jim McCambridge
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Person-centred ,Patient-centred ,Measurement ,Consultation skills ,Healthcare practitioners ,Special aspects of education ,LC8-6691 ,Medicine - Abstract
Abstract Background Person-centred care is integral to high-quality health service provision, though concepts vary and the literature is complex. Validated instruments that measure person-centred practitioner skills, and behaviours within consultations, are needed for many reasons, including in training programmes. We aimed to provide a high-level synthesis of what was expected to be a large and diverse literature through a systematic review of existing reviews of validation studies a of instruments that measure person-centred practitioner skills and behaviours in consultations. The objectives were to undertake a critical appraisal of these reviews, and to summarise the available validated instruments and the evidence underpinning them. Methods A systematic search of Medline, EMBASE, PsycINFO and CINAHL was conducted in September 2020. Systematic reviews of validation studies of instruments measuring individual practitioner person-centred consultation skills or behaviours which report measurement properties were included. Review quality was assessed with the Joanna Briggs Institute Critical Appraisal Checklist for Systematic Reviews and Research Syntheses. Details of the reviews, the included validation studies, and the instruments themselves are tabulated, including psychometric data, and a narrative overview of the reviews is provided. Results Four reviews were eligible for inclusion. These used different conceptualisations of person-centredness and targeted distinct, sometimes mutually exclusive, practitioners and settings. The four reviews included 68 unique validation studies examining 42 instruments, but with very few overlaps. The critical appraisal shows there is a need for improvements in the design of reviews in this area. The instruments included within these reviews have not been subject to extensive validation study. Discussion There are many instruments available which measure person-centred skills in healthcare practitioners and this study offers a guide to what is available to researchers and research users. The most relevant and promising instruments that have already been developed, or items within them, should be further studied rigorously. Validation study of existing material is needed, not the development of new measures.
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- 2023
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244. Root-hypoxia tolerance in soybean sister-lines plants indicates a better balance in energy use/dissipation and oxidative stress control
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Posso, Douglas Antônio, da-Silva, Cristiane Jovelina, Shimoia, Eduardo Pereira, Martins, Tamires da Silva, Reissig, Gabriela Niemeyer, de Oliveira, Ana Claudia Barneche, Borella, Junior, van Dongen, Joost Thomas, and Amarante, Luciano do
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- 2023
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245. A prospective open label 2–8 year extension of the randomised controlled ICON trial on the long-term efficacy and safety of occipital nerve stimulation in medically intractable chronic cluster headache
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Ferrari, Michel D., Wilbrink, Leopoldine A., De Coo, Ilse F., Doesborg, Patty G., Bartels, Eveline C., Van Zwet, Erik W., Huygen, Frank J.P.M., Mulleners, Wim M., Kurt, Erkan, Van Dongen, Robert T.M., Teernstra, Onno P.M., Koehler, Peter J., Spincemaille, Geert H., Wille, Frank, Burger, Katja, Haan, Joost, Couturier, Emile G.M., Kallewaard, Jan Willem, Veltink, Peter H., Buschman, R., Brandt, Roemer B., de Coo, Ilse F., van Zwet, Erik W., and Fronczek, Rolf
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- 2023
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246. Autoantibody subclass predominance is not driven by aberrant class switching or impaired B cell development
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Paardekooper, Laurent M., Fillié-Grijpma, Yvonne E., van der Sluijs-Gelling, Alita J., Zlei, Mihaela, van Doorn, Remco, Vermeer, Maarten H., Paunovic, Manuela, Titulaer, Maarten J., van der Maarel, Silvère M., van Dongen, Jacques J.M., Verschuuren, Jan J., and Huijbers, Maartje G.
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- 2023
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247. Fermented biochar has a markedly different effect on fate of pesticides in soil than compost, straw, and a mixed biochar-product
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Siedt, Martin, Vonhoegen, Denise, Smith, Kilian E.C., Roß-Nickoll, Martina, van Dongen, Joost T., and Schäffer, Andreas
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- 2023
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248. Explainable conformance checking: Understanding patterns of anomalous behavior
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Mozafari Mehr, Azadeh Sadat, M. de Carvalho, Renata, and van Dongen, Boudewijn
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- 2023
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249. Dissociating effects of aging and genetic risk of sporadic Alzheimer’s disease on path integration
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Colmant, Lise, Bierbrauer, Anne, Bellaali, Youssef, Kunz, Lukas, Van Dongen, Jasper, Sleegers, Kristel, Axmacher, Nikolai, Lefèvre, Philippe, and Hanseeuw, Bernard
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- 2023
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250. Consensus-based guidance for conducting and reporting multi-analyst studies
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Aczel, Balazs, Szaszi, Barnabas, Nilsonne, Gustav, van den Akker, Olmo R, Albers, Casper J, van Assen, Marcel ALM, Bastiaansen, Jojanneke A, Benjamin, Daniel, Boehm, Udo, Botvinik-Nezer, Rotem, Bringmann, Laura F, Busch, Niko A, Caruyer, Emmanuel, Cataldo, Andrea M, Cowan, Nelson, Delios, Andrew, van Dongen, Noah NN, Donkin, Chris, van Doorn, Johnny B, Dreber, Anna, Dutilh, Gilles, Egan, Gary F, Gernsbacher, Morton Ann, Hoekstra, Rink, Hoffmann, Sabine, Holzmeister, Felix, Huber, Juergen, Johannesson, Magnus, Jonas, Kai J, Kindel, Alexander T, Kirchler, Michael, Kunkels, Yoram K, Lindsay, D Stephen, Mangin, Jean-Francois, Matzke, Dora, Munafò, Marcus R, Newell, Ben R, Nosek, Brian A, Poldrack, Russell A, van Ravenzwaaij, Don, Rieskamp, Jörg, Salganik, Matthew J, Sarafoglou, Alexandra, Schonberg, Tom, Schweinsberg, Martin, Shanks, David, Silberzahn, Raphael, Simons, Daniel J, Spellman, Barbara A, St-Jean, Samuel, Starns, Jeffrey J, Uhlmann, Eric Luis, Wicherts, Jelte, and Wagenmakers, Eric-Jan
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Biological Sciences ,Biomedical and Clinical Sciences ,Health Sciences ,Consensus ,Data Analysis ,Datasets as Topic ,Research ,multi-analyst ,metascience ,statistical practice ,science forum ,expert consensus ,analytical variability ,None ,medicine ,neuroscience ,none ,Biochemistry and Cell Biology ,Biological sciences ,Biomedical and clinical sciences ,Health sciences - Abstract
Any large dataset can be analyzed in a number of ways, and it is possible that the use of different analysis strategies will lead to different results and conclusions. One way to assess whether the results obtained depend on the analysis strategy chosen is to employ multiple analysts and leave each of them free to follow their own approach. Here, we present consensus-based guidance for conducting and reporting such multi-analyst studies, and we discuss how broader adoption of the multi-analyst approach has the potential to strengthen the robustness of results and conclusions obtained from analyses of datasets in basic and applied research.
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- 2021
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