8,152 results on '"root nodule bacteria"'
Search Results
202. Genetic Variability and Symbiotic Efficiency of Erythrina velutina Willd. Root Nodule Bacteria from the Semi-Arid Region in Northeastern Brazil
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Menezes, Kelly Alexsandra Souza, primary, Escobar, Indra Elena Costa, additional, Fraiz, Ana Carla Resende, additional, Martins, Lindete Míria Vieira, additional, and Fernandes Júnior, Paulo Ivan, additional
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- 2017
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203. Wpływ próchnicy rozpuszczalnej na infekcję grochu przez bakterie brodawkowe [The influence of soluble humus substances on infection of pea plants by the root-nodule bacteria]
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Brodowska-Dworakowska, Halina, primary
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- 2017
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204. Multilocus Sequence Analysis of Root Nodule Bacteria Associated with <i>Lupinus</i> spp. and <i>Glycine max</i>
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Beligala, Dilshan H., primary, Michaels, Helen J., additional, Devries, Michael, additional, and Phuntumart, Vipaporn, additional
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- 2017
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205. Genetic description of root nodule bacteria of Lathyrus species growing in the territory of Republic Bashkortostan
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Konstantin G Ptitsyn, Albert A Muldashev, and Aleksei K Baymiev
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Genetic diversity ,Root nodule ,Ecology ,biology ,lcsh:QH426-470 ,Agrobacterium ,food and beverages ,Fabaceae ,medicine.disease_cause ,biology.organism_classification ,Biochemistry ,Rhizobium leguminosarum ,Phyllobacterium myrsinacearum ,Rhizobia ,lcsh:Genetics ,Botany ,Genetics ,medicine ,Lathyrus ,lathyrus ,Genetics (clinical) ,Ecology, Evolution, Behavior and Systematics - Abstract
The genetic diversity and phylogeny of rhizobia isolated from nodules of 9 wild-growing Lathyrus L. species (Fabaceae) growing in Republic Bashkortostan were studied. It is shown that for the given plants is characteristic that the big variety of heterogeneous strains of root nodule bacteria. Nevertheless, it is revealed that the majority of them in phylogenetics are closely related to Rhizobium leguminosarum. However, some plant species are found out also nodule bacteria which were considered earlier unusual for Lathyrus. So, L. vernus L. Bernh. and L. sylvestris L. are found out a root nodule bacteria close to R. tropici, L. palustris L. — Agrobacterium sp., and L. gmelinii Fritsch all isolated with us bacteria from root nodules by the sequence of genes of 16S рРНК have appeared are closely related to Phyllobacterium myrsinacearum.
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- 2011
206. Genetic Circuits Involved in the Response of Root Nodule Bacteria to Low pH
- Author
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Andrew R. Glenn, Wayne Reeve, Michael J. Dilworth, and Ravi Tiwari
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Mediterranean climate ,Root nodule bacteria ,biology ,Productivity (ecology) ,Sinorhizobium ,Soil pH ,Acid tolerance ,Botany ,food and beverages ,biology.organism_classification ,Bacteria ,Legume - Abstract
The Sinorhizobium-legume interaction is sensitive to a number of environmental factors: one of the important stresses is soil acidity. Low pH imposes severe constraints on legume productivity. In the Sinorhizobium-Medicago partnership, prokaryotic partner is the most acid-sensitive. The isolation of acid-tolerant Sinorhizobium strains from the eastern and southern Mediterranean rim have allowed the successful development of medic pastures on over I million ha of land in Western Australia, posing two important questions: • How do acid-tolerant strains differ from acid-sensitive counterparts? • How do agriculturally important root nodule bacteria respond to low pH? Knowledge of the genetic circuits required and activated by the cell in acidic conditions is vital to understand the response and survival of bacteria in these conditions. The molecular basis of acid tolerance has been investigated with several approaches (Glenn et al. 1999).
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- 2000
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207. A Genomic Encyclopedia of the Root Nodule Bacteria: assessing genetic diversity through a systematic biogeographic survey.
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Reeve W, Ardley J, Tian R, Eshragi L, Yoon JW, Ngamwisetkun P, Seshadri R, Ivanova NN, and Kyrpides NC
- Abstract
Root nodule bacteria are free-living soil bacteria, belonging to diverse genera within the Alphaproteobacteria and Betaproteobacteria, that have the capacity to form nitrogen-fixing symbioses with legumes. The symbiosis is specific and is governed by signaling molecules produced from both host and bacteria. Sequencing of several model RNB genomes has provided valuable insights into the genetic basis of symbiosis. However, the small number of sequenced RNB genomes available does not currently reflect the phylogenetic diversity of RNB, or the variety of mechanisms that lead to symbiosis in different legume hosts. This prevents a broad understanding of symbiotic interactions and the factors that govern the biogeography of host-microbe symbioses. Here, we outline a proposal to expand the number of sequenced RNB strains, which aims to capture this phylogenetic and biogeographic diversity. Through the Vavilov centers of diversity (Proposal ID: 231) and GEBA-RNB (Proposal ID: 882) projects we will sequence 107 RNB strains, isolated from diverse legume hosts in various geographic locations around the world. The nominated strains belong to nine of the 16 currently validly described RNB genera. They include 13 type strains, as well as elite inoculant strains of high commercial importance. These projects will strongly support systematic sequence-based studies of RNB and contribute to our understanding of the effects of biogeography on the evolution of different species of RNB, as well as the mechanisms that determine the specificity and effectiveness of nodulation and symbiotic nitrogen fixation by RNB with diverse legume hosts.
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- 2015
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208. High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr
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Kyrpides, Nikos [USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Biological Sciences]
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- 2017
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209. High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia
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Reeve, Wayne [Murdoch Univ., WA (Australia). School of Veterinary and Life Sciences]
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- 2017
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210. Plant growth promotion and suppression of charcoal-rot fungus ( Macrophomina phaseolina) in velvet bean ( Mucuna pruriens L.) by root nodule bacteria.
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Aeron, Abhinav, Maheshwari, Dinesh Kumar, Dheeman, Shrivardhan, Agarwal, Mohit, Dubey, Ramesh Chand, and Bajpai, Vivek K.
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COWHAGE , *PLANT growth , *CHARCOAL rot , *RHIZOBIUM , *SIDEROPHORES - Abstract
Root-nodulating bacteria are intimate associates of legumes. From a pool of rhizobia isolated from root nodules of Mucuna pruriens (Velvet bean/Kaunch), RMP66 and BMP17 were found to be capable of promoting siderophore and IAA production and phosphate solubilization (insoluble tri-calcium). Both symbionts were studied further to determine their abilities to promote plant growth and to control root-rot in Mucuna pruriens caused by the pathogenic plant fungus Macrophomina phaseolina. RMP66 and BMP17 were selected based on their excellent inhibitory activities against M. phaseolina (by 78% and 71%, respectively) in dual culture and in agar-well assays using cell-free culture filtrate (CFCF) (by 76% and 62%, respectively). Both strains inhibited fungal growth to a greater extent in iron-deficient medium (51% and 69%) than in iron-supplemented medium (37% and 0%), respectively. CFCFs of RMP66 and BMP17 obtained from Pikovskaya's broth and tryptophan-amended YEM broth inhibited fungal growth by 80%-55% and 70%-43%, respectively, and were identified as Sinorhizobium meliloti RMP66 and Bradyrhizobium diazoefficiens BMP17 by 16S rDNA sequencing. Centrifuged and pelleted cells harvested from exponentially grown cultures of S. meliloti RMP66 and B. diazoefficiens BMP17 were used to bacterize seeds of M. pruriens, which then showed enhanced seed germination (by up to 17% and 12%, respectively), and subsequent increases in other plant growth parameters in field trials. Considerable increases in seedling vigour indices (62%: 53% and 110%: 130%) and biomass (8%: 13% and 25%: 28%) were also observed for bacterial treatments. Tn5-mediated antibiotic-resistant marker strains showed enhanced nodule occupancy by up to 72% and 68%, respectively. This study describes a multifunctional legume nodule rhizobia that could be utilized in multicropping systems under different agroclimatic conditions as a bioinoculant and alternative to fertilizers. [ABSTRACT FROM AUTHOR]
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- 2017
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211. Quantitative evaluation of acidity tolerance of root nodule bacteria
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Luiz Antonio de Oliveira and Hélio Paracaima de Magalhães
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Root nodule bacteria ,Strain (chemistry) ,Petri dish ,Biology ,biology.organism_classification ,rhizobia ,Microbiology ,law.invention ,Persistence (computer science) ,Rhizobia ,tolerance to pH ,Horticulture ,law ,Botany ,Soil water ,Nitrogen fixation ,General Agricultural and Biological Sciences ,Microbial inoculant ,Amazon - Abstract
Quantification of acidity tolerance in the laboratory may be the first step in rhizobial strain selection for the Amazon region. The present method evaluated rhizobia in Petri dishes with YMA medium at pH 6.5 (control) and 4.5, using scores of 1.0 (sensitive, "no visible" growth) to 4.0 (tolerant, maximum growth). Growth evaluations were done at 6, 9, 12, 15 and 18 day periods. This method permits preliminary selection of root nodule bacteria from Amazonian soils with statistical precision. Among the 31 rhizobia strains initially tested, the INPA strains 048, 078, and 671 presented scores of 4.0 at both pHs after 9 days of growth. Strain analyses using a less rigorous criterion (growth scores higher than 3.0) included in this highly tolerant group the INPA strains 511, 565, 576, 632, 649, and 658, which grew on the most diluted zone (zone 4) after 9 days. Tolerant strains still must be tested for nitrogen fixation effectiveness, competitiveness for nodule sites, and soil persistence before their recommendation as inoculants.
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- 1999
212. Characterization of Root-Nodule Bacteria Isolated from Hedysarum spinosissimum L, Growing in Mining Sites of Northeastern Region of Morocco
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Yassir Idir, Gilles Béna, Abdelkarim Filali-Maltouf, Odile Bruneel, Antoine Le Quéré, Laila Sbabou, Jamal Aurag, Université Mohammed V de Rabat [Agdal] (UM5), Hydrosciences Montpellier (HSM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire des symbioses tropicales et méditerranéennes (UMR LSTM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Institut de Recherche pour le Développement (IRD)-Institut National de la Recherche Agronomique (INRA)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), UMR - Interactions Plantes Microorganismes Environnement (UMR IPME), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD [France-Sud]), Université Mohammed V de Rabat [Agdal], Institut de Recherche pour le Développement (IRD)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université Montpellier 1 (UM1)-Institut de Recherche pour le Développement (IRD)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institut national des sciences de l'Univers (INSU - CNRS)-Institut de Recherche pour le Développement (IRD)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD)-Université de Montpellier (UM)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro), Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Institut de Recherche pour le Développement (IRD [France-Sud])-Université de Montpellier (UM)-Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)
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legumes ,Herbaspirillum ,BIODEGRADATION ,BACTERIE ,Nodulation ,03 medical and health sciences ,Heavy metal resistance ,POLLUTION ,Botany ,Microbial inoculant ,030304 developmental biology ,Mine tailings ,0303 health sciences ,SOL ,biology ,Traditional medicine ,NODULE RACINAIRE ,030306 microbiology ,[SDE.IE]Environmental Sciences/Environmental Engineering ,LEGUMINEUSE ,PHYTOREMEDIATION ,Pseudomonas ,Pantoea ,MINE ,biology.organism_classification ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Pseudomonas putida ,Phytoremediation ,Geography ,Phytostabilisation ,METAL LOURD ,Rhizobium ,Herbaspirillum huttiense ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology ,Bacteria ,DEPOLLUTION - Abstract
International audience; The aim of this study was to identify bacteria present in the nodules of the legume Hedysarum spinosissimum growing in metal-contaminated soils; and to test whether these root-nodule bacteria are able to promote host plant growth and enhance their phytostabilization potential. Seventy-four bacteria were isolated from nodules of H. spinosissimum growing in 3 different mining sites in Morocco and were identified by 16S rDNA gene sequencing. They belonged to 8 genera affiliated to Pseudomonas (49 strains), Pantoea (11), Rhizobium (6), Herbaspirillum (3), Bacillus (2), and one strain of Serratia, Agrobacterium and Azospirillum. Seven strains, presenting a high tolerance to Zn and Pb, exhibited capacity of inorganic phosphate solubilization and ammonia production from peptone degradation. The inoculation of H. spinosissimum, growing in 2000 μM of Zn by Pseudomonas putida and Herbaspirillum huttiense suppresses Zn toxicity symptoms in plants and also enhances plant growth by significantly increasing plant shoot and root fresh weights. The maximal Zn accumulation was observed in roots of plants inoculated by Pseudomonas putida with a translocation factor of 0.05(\textpm 0.006). Our results, evidence that the selection of metal-resistant bacteria is a key step in polluted soils for the use of plants like Hedysarum spinosissimum for in situ phytoremediation.
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- 2016
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213. A Mesorhizobium japonicum quorum sensing circuit that involves three linked genes and an unusual acyl-homoserine lactone signal
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Zehui Suo, Dale A. Cummings, Aaron W. Puri, Amy L. Schaefer, and E. Peter Greenberg
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bacterial communication ,LuxI homolog ,root nodule bacteria ,acyl-CoA-dependent autoinducer synthase ,autoinduction ,Microbiology ,QR1-502 - Abstract
ABSTRACT Members of the genus Mesorhizobium, which are core components of the rhizosphere and specific symbionts of legume plants, possess genes for acyl-homoserine lactone (AHL) quorum sensing (QS). Here we show Mesorhizobium japonicum MAFF 303099 (formerly M. loti) synthesizes and responds to N-[(2E, 4E)-2,4-dodecadienoyl] homoserine lactone (2E, 4E-C12:2-HSL). We show that the 2E, 4E-C12:2-HSL QS circuit involves one of four luxR-luxI-type genes found in the sequenced genome of MAFF 303099. We refer to this circuit, which appears to be conserved among Mesorhizobium species, as R1-I1. We show that two other Mesorhizobium strains also produce 2E, 4E-C12:2-HSL. The 2E, 4E-C12:2-HSL is unique among known AHLs in its arrangement of two trans double bonds. The R1 response to 2E, 4E-C12:2-HSL is extremely selective in comparison with other LuxR homologs, and the trans double bonds appear critical for R1 signal recognition. Most well-studied LuxI-like proteins use S-adenosylmethionine and an acyl-acyl carrier protein as substrates for synthesis of AHLs. Others that form a subgroup of LuxI-type proteins use acyl-coenzyme A substrates rather than acyl-acyl carrier proteins. I1 clusters with the acyl-coenzyme A-type AHL synthases. We show that a gene linked to the I1 AHL synthase is involved in the production of the QS signal. The discovery of the unique I1 product enforces the view that further study of acyl-coenzyme A-dependent LuxI homologs will expand our knowledge of AHL diversity. The involvement of an additional enzyme in AHL generation leads us to consider this system a three-component QS circuit. IMPORTANCE We report a Mesorhizobium japonicum quorum sensing (QS) system involving a novel acyl-homoserine lactone (AHL) signal. This system is known to be involved in root nodule symbiosis with host plants. The chemistry of the newly described QS signal indicated that there may be a dedicated cellular enzyme involved in its synthesis in addition to the types known for production of other AHLs. Indeed, we report that an additional gene is required for synthesis of the unique signal, and we propose that this is a three-component QS circuit as opposed to the canonical two-component AHL QS circuits. The signaling system is exquisitely selective. The selectivity may be important when this species resides in the complex microbial communities around host plants and may make this system useful in various synthetic biology applications of QS circuits.
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- 2023
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214. Phenetic and Functional Characterization of Endophytic Root-nodule Bacteria Isolated from Chickpea (Cicer arietinum L.) and Mothbean (Vigna aconitifolia L.) of Arid-and Semi-arid Regions of Rajasthan, India
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Saroj Sharma, Devendra Kumar Choudhary, and Rajarshi Kumar Gaur
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Siderophore ,Agrobacterium ,Climate ,India ,Erwinia ,Plant Roots ,Polymerase Chain Reaction ,food ,RNA, Ribosomal, 16S ,Genotype ,Botany ,Vigna aconitifolia ,Phylogeny ,DNA Primers ,Bacteria ,Base Sequence ,biology ,Pseudomonas ,food and beverages ,Fabaceae ,biology.organism_classification ,Cicer ,food.food ,Rhizobium ,Agronomy and Crop Science - Abstract
In the present study we recovered endophytic root-nodule bacteria from chickpea (Cicer arietinumi L.) and mothbean (Vigna aconitifolia L.). Phenotypic and genotypic characterization of isolates was performed by employing biochemical and genetic approaches. Sequencing data showed that most isolates belonged to genus, Pseudomonas spp. being a dominant species. They also showed similarity with Rhizobium, Agrobacterium and Erwinia spp. Isolates were screened functionally for indole-3-acetic acid, siderophore production and inorganic phosphorus (Pi) solubilization. All isolates showed Pi solubilization except CJS-2. Nine isolates (CSS-1, CBS-1, CLS-3, CCS-1, CHS-1, VS-1, VL-1, VN-1, VN-2) were found positive for IAA production and eight isolates (CBS-1, CCS-1, CHS-2, CKS-2, CNS-2, VS-1, VJ-1) exhibited positive results for siderophore production. An understanding of the phonetic and functional diversity of these microbes that interact with plants will be worthwhile to fully achieve the biotechnological potential of efficient plant-microbe partnerships for a range of applications.
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- 2012
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215. Root-Nodule Bacteria of Prosopis Stephaniana
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Khudairi, A. K.
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- 1957
216. Seed and seedling responses to inoculation with mycorrhizal fungi and root nodule bacteria: implications for restoration of degraded Mediterranean-type Tuart woodlands
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T. So, Bernard Dell, and Katinka X. Ruthrof
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Inoculation ,Microorganism ,fungi ,food and beverages ,Sowing ,Eucalyptus gomphocephala ,Management, Monitoring, Policy and Law ,Biology ,biology.organism_classification ,Spore ,Agronomy ,Seedling ,Ecosystem ,Ecology, Evolution, Behavior and Systematics ,Nature and Landscape Conservation ,Acacia saligna - Abstract
Inoculation with beneficial soil microorganisms has the potential to enhance success of restoration, particularly in harsh Mediterranean-type ecosystems (MTEs). We investigated the effects of microorganisms (mycorrhizal fungi and root nodule bacteria) and planting material (seed and nursery-raised seedlings) on early establishment and growth of two key postdisturbance colonizing species with different life histories, life forms and functional types (Eucalyptus gomphocephala and Acacia saligna) under field conditions. Establishment and growth were monitored at 13months, following the first MTE drought period. For E. gomphocephala, establishment was higher for seedlings (81%) than for seeding (7.5%). Inoculation with ectomycorrhizal fungal spores was not beneficial. For A. saligna, establishment was also higher for seedlings (84%) than for seeding (42.5%). Mycorrhizal fungal inoculum had no effect on establishment or growth. This study has shown that in harsh MTE conditions, the use of seedlings is more effective than seeding in degraded woodlands even when attempting to reintroduce key colonizing species. The microorganism treatments tested did not result in significant improvement in establishment or growth.
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- 2011
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217. Genetic diversity of root nodule bacteria nodulating Lotus corniculatus and Anthyllis vulneraria in Sweden
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Osei Yaw Ampomah and Kerstin Huss-Danell
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DNA, Bacterial ,Molecular Sequence Data ,DNA, Ribosomal ,Applied Microbiology and Biotechnology ,Microbiology ,Anthyllis vulneraria ,Rhizobia ,Bacterial Proteins ,23S ribosomal RNA ,RNA, Ribosomal, 16S ,DNA, Ribosomal Spacer ,Botany ,Cluster Analysis ,Lotus corniculatus ,Internal transcribed spacer ,Phylogeny ,Ecology, Evolution, Behavior and Systematics ,Sweden ,Genetic diversity ,Bacteria ,biology ,Genetic Variation ,food and beverages ,Fabaceae ,Biodiversity ,Sequence Analysis, DNA ,biology.organism_classification ,Bacterial Typing Techniques ,Mesorhizobium loti ,Molecular Typing ,Restriction fragment length polymorphism ,Root Nodules, Plant ,Acyltransferases ,Polymorphism, Restriction Fragment Length - Abstract
Very little is known about the genetic diversity and phylogeny of rhizobia nodulating Lotus species in northern temperate regions. We have therefore studied the genetic diversity among a total of 61 root nodule bacteria isolated from Lotus corniculatus and Anthyllis vulneraria from different geographic sites and habitats in Sweden by restriction fragment length polymorphism (RFLP) of the internal transcribed spacer between their 16S rRNA and 23S rRNA (IGS) region. A high diversity consisting of 26 IGS types from 54 L. corniculatus isolates and five IGS types from seven A. vulneraria isolates was found. The 16S rRNA sequences and phylogeny of representatives of the different IGS types showed four interesting exceptions from the majority of the isolates belonging to the genus Mesorhizobium: Two isolates were both found to be closely related to Rhodococcus spp., and two other isolates showed close relationship with Geobacillus spp. and Paenibacillus spp., respectively. The nodA sequences and phylogeny showed that all the isolates, including those not belonging to the traditional rhizobia genera, harbored nodA sequences which were typical of Mesorhizobium loti. Generally, the 16S rRNA and nodA phylogenetic trees were not congruent in that isolates with similar 16S rRNA sequences were associated with isolates harboring different nodA sequences. All the isolates were confirmed to nodulate L. corniculatus in an inoculation test. This is the first report of members of these non-rhizobia genera being able to nodulate legumes, and we suggest that they may have acquired their nodulating properties through lateral gene transfer.
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- 2011
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218. Use of Potato Extract Broth for Culturing Root-Nodule Bacteria
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Jadwiga Oroń and S. Martyniuk
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Microbiology (medical) ,food and beverages ,General Medicine ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Bradyrhizobium ,Yeast ,law.invention ,Rhizobia ,Erlenmeyer flask ,law ,Azorhizobium ,Rhizobium ,Food science ,Incubation ,Bacteria - Abstract
Liquid media containing potato extract and 1% of glucose or sucrose were used to culture root-nodule bacteria (rhizobia) in shaken Erlenmeyer flasks. For comparison, these bacteria were also cultured in yeast extract-mannitol broth (YEMB) as a standard medium. Proliferation of rhizobia was monitored by measuring optical densities (OD550) of the cultures and by plate counting of the viable cells (c.f.u) of the bacteria. In general, multiplication of the rhizobia in potato extract-glucose broth (PEGB) and potato extract-sucrose broth (PESB) was markedly faster, as indicated by higher values of OD550, than in YEMB. The numbers of R. leguminosarum by. vicae GGL and S. meliloti 330 in PEGB and PEGB were high and ranged from 1.2 x 10(10) to 4.9 x 10(10) mL(-1) after 48 h of incubation at 28 degrees C. B. japonicum B3S culture in PEGB contained 6.4 x 10(9) c.f.u. ml(-1) after 72 h of incubation. PEGB and YEMB cultures of the rhizobia were similar with respect to their beneficial effects on nodulation of the host-plants of these bacteria.
- Published
- 2011
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219. gusA Derivatives for the Genetic Analysis of the Root Nodule Bacteria
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S. Rome, Ravi Tiwari, Wayne Reeve, Andrew R. Glenn, Michael J. Dilworth, and John Howieson
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Genetics ,Root nodule bacteria ,Inverted repeat ,fungi ,Reading frame ,Biology ,medicine.disease_cause ,biology.organism_classification ,Genetic analysis ,Stop codon ,Botany ,medicine ,Gene ,Escherichia coli ,Bacteria - Abstract
Native s-glucuronidase activity is absent in the root nodule bacteria. The Escherichia coli gusA gene (conferring s-glucuronidase activity) can be used as a tool for the genetic analysis of these bacteria. The gusA was modified by positioning stop codons in all three reading frames (before the RBS of gusA) to prevent translational fusions.
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- 1998
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220. Productivity of soybean-rhizobium symbiosis after modification of root nodule bacteria activity with exogenous proteins
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D. M. Sytnikov, S. Ya. Kots, D. A. Kirizii, and S.M. Malichenko
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biology ,fungi ,food and beverages ,Lectin ,Plant Science ,biology.organism_classification ,Rhizobia ,Symbiosis ,Biochemistry ,Botany ,Nitrogen fixation ,biology.protein ,Rhizobium ,Soybean agglutinin ,Bacteria ,Bradyrhizobium japonicum - Abstract
Plant growth experiments were conducted to assess symbiotic efficiency, photosynthetic rates, and the development of soybean (Glycine max (L.) Merrill) seedlings after seed inoculation with active and inactive strains of root nodule bacteria Bradyrhizobium japonicum preincubated in the presence homologous and heterologous proteins. The properties of active and inactive symbiotic strains were differentially modulated by homologous soybean lectin, which had a marked influence on plant physiological condition. The incubation of active rhizobia with a homologous lectin, i.e., lectin of the respective plant, increased the nitrogen-fixing activity of nodules and, consequently, elevated photosynthetic rates and weight increments in soybean plants. At the same time, the homologous lectin suppressed the symbiotic properties of inactive strain of nodule bacteria. The preincubation of rhizobia with a heterologous pea lectin had virtually no effect on functioning of symbiotic apparatus and photosynthetic rate, whereas the preincubation of root nodule bacteria with human albumin exerted an effect similar to that induced by a homologous lectin on symbiotic productivity.
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- 2007
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221. Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria
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Tanja Woyke, Julie Ardley, Rekha Seshadri, Nikos C. Kyrpides, Wayne Reeve, Kristin Tennessen, and Natalia Ivanova
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Root nodule ,Plant Root Nodulation ,Article ,Rhizobia ,Bacterial Proteins ,Species Specificity ,Phylogenetics ,Nitrogen Fixation ,Operon ,Symbiosis ,Phylogeny ,Comparative genomics ,Multidisciplinary ,Genome ,biology ,Geography ,Ecology ,Bacterial ,food and beverages ,Fabaceae ,Gene Expression Regulation, Bacterial ,Plant ,biology.organism_classification ,Other Physical Sciences ,Gene Expression Regulation ,Genes ,Evolutionary biology ,Genes, Bacterial ,Host-Pathogen Interactions ,Nitrogen fixation ,Rhizobium ,Root Nodules ,Zero Hunger ,Biochemistry and Cell Biology ,Root Nodules, Plant ,Genome, Bacterial - Abstract
© 2015, Nature Publishing Group. All rights reserved. Root nodule bacteria (RNB) or "rhizobia" are a type of plant growth promoting bacteria, typified by their ability to fix nitrogen for their plant host, fixing nearly 65% of the nitrogen currently utilized in sustainable agricultural production of legume crops and pastures. In this study, we sequenced the genomes of 110 RNB from diverse hosts and biogeographical regions, and undertook a global exploration of all available RNB genera with the aim of identifying novel genetic determinants of symbiotic association and plant growth promotion. Specifically, we performed a subtractive comparative analysis with non-RNB genomes, employed relevant transcriptomic data, and leveraged phylogenetic distribution patterns and sequence signatures based on known precepts of symbiotic- and host-microbe interactions. A total of 184 protein families were delineated, including known factors for nodulation and nitrogen fixation, and candidates with previously unexplored functions, for which a role in host-interaction, -regulation, biocontrol, and more, could be posited. These analyses expand our knowledge of the RNB purview and provide novel targets for strain improvement in the ultimate quest to enhance plant productivity and agricultural sustainability.
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- 2015
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222. Screening of Rhizobium, Hairy Vetch Root Nodule Bacteria, with Promotion of Nodulation and Nitrogen Fixation
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Jong-Ok Jang, Mi-Kyung Kwon, Chang-Jin Kim, Chang Keun Sung, and Dong-Jin Park
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Crop ,Green manure ,Vicia villosa ,Root nodule ,Agronomy ,biology ,Strain (chemistry) ,Nitrogen fixation ,food and beverages ,Rhizobium ,biology.organism_classification ,Microbiology ,Rhizobia - Abstract
This study was conducted to select rhizobia from hairy vetch (Vicia villosa Roth) with nodulation and excellent nitrogen-fixing ability. Hairy vetch root was collected from 7 of cultivation region of all over the country, rhizobia were isolated from the root nodules. Isolates were re-inoculated into a hairy vetch separately and studied nodulation and nitrogen-fixing ability. As a result, total of 52 Rhizobium isolates were isolated from the hairy vetch root nodules, among these, 16 isolates were Rhizobium which show good growth at more than 0.5% NaCl concentration. These 16 isolates were re-inoculated separately, 8 weeks after, good root nodule formation was observed from Rhizobium sp. RH1, RH3, RH81, RH82, RH84, and RH93 strain treated samples. Six isolates were positive for nitrogen fixing ability, the highest acetylene reduction activity was shown by Rhizobium sp. RH84. Results suggest that the Rhizobium sp. RH84 could be used as the possibility of its application as a green manure crop of hairy vetches in nonuniform salt distribution reclaimed land.
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- 2013
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223. Characterization of root-nodule bacteria isolated from Vicia faba and selection of plant growth promoting isolates
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Maher Gtari, Ridha Mhamdi, Sabrine Saïdi, and Samir Chebil
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DNA, Bacterial ,Root nodule ,Physiology ,Molecular Sequence Data ,Siderophores ,Biology ,medicine.disease_cause ,DNA, Ribosomal ,Polymerase Chain Reaction ,Applied Microbiology and Biotechnology ,Rhizobium leguminosarum ,Phosphates ,Microbiology ,Rhizobia ,Plant Growth Regulators ,Pseudomonas ,RNA, Ribosomal, 16S ,medicine ,Cluster Analysis ,Biomass ,Phylogeny ,food and beverages ,Pathogenic bacteria ,Sequence Analysis, DNA ,General Medicine ,16S ribosomal RNA ,biology.organism_classification ,Vicia faba ,Root Nodules, Plant ,Plant Shoots ,Polymorphism, Restriction Fragment Length ,Bacteria ,Biotechnology - Abstract
A collection of 104 isolates from root-nodules of Vicia faba was submitted to 16S rRNA PCR-RFLP typing. A representative sample was further submitted to sequence analysis of 16S rRNA. Isolates were assigned to 12 genera. All the nodulating isolates (45 %) were closely related to Rhizobium leguminosarum USDA2370(T) (99.34 %). The remaining isolates, including potential human pathogens, failed to nodulate their original host. They were checked for presence of symbiotic genes, P-solubilization, phytohormone and siderophore production, and then tested for their growth promoting abilities. Results indicated that 9 strains could induce significant increase (41-71 %) in shoot dry yield of faba bean. A Pseudomonas strain was further assessed in on-farm trial in combination with a selected rhizobial strain. This work indicated that nodule-associated bacteria could be a valuable pool for selection of effective plant growth promoting isolates. Nevertheless, the possible involvement of nodules in increasing risks related to pathogenic bacteria should not be neglected and needs to be investigated further.
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- 2013
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224. Characterization of root-nodule bacteria isolated from the medicinal legume Indigofera tinctoria
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Achara Nuntagij, Nantakorn Boonkerd, Neelawan Pongsilp, Neung Teaumroong, and Chonchanok Leelahawonge
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Root nodule ,biology ,Mesorhizobium ,food and beverages ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Bradyrhizobium ,Indigofera tinctoria ,Microbiology ,Rhizobia ,Pseudoalteromonas ,Sinorhizobium ,Botany ,bacteria ,Proteobacteria - Abstract
Fourteen root-nodule bacteria isolated from the medicinal legume Indigofera tinctoria were characterized for their phenotypic features including growth curves, utilization of carbon and nitrogen sources, antibiotic resistance, vitamin requirement and growth under different conditions. The partial sequences of the 16S rDNA of these strains were obtained and BLASTN analysis revealed that the microsymbionts of I. tinctoria were related to members of five distinct genera: Rhizobium, Sinorhizobium, Bradyrhizobium, Cupriavidus and Pseudoalteromonas. The partial nifH gene of Pseudoalteromonas-like strain DASA 57075 had 96% similarity with nifH genes of members of Bradyrhizobium. The partial nodC gene of Pseudoalteromonas-like strain DASA 57075 showed 88% similarity with the nodC gene of several rhizobia including Sinorhizobium, Bradyrhizobium and Mesorhizobium. We propose a bacterium that is related to Pseudoalteromonas from the gamma-class of Proteobacteria as a new legume symbiont. This is also the first report that the same species of legume can be nodulated by bacteria from up to five different genera in three distinct classes.
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- 2010
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225. Root nodule bacteria from Clitoria ternatea L. are putative invasive nonrhizobial endophytes.
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Aeron, Abhinav, Chauhan, Puneet Singh, Dubey, Ramesh Chand, Maheshwari, Dinesh Kumar, and Bajpai, Vivek K.
- Subjects
- *
LEGUMES , *RNA sequencing , *POLYMERASE chain reaction , *RHIZOBIACEAE , *ENDOPHYTES , *ROOT-tubercles - Abstract
In this study, bacteria (8 species and 5 genera) belonging to the classes Betaproteobacteria, Gammaproteobacteria, and Sphingobacteria were isolated from root nodules of the multipurpose legume Clitoria ternatea L. and identified on the basis of partial 16S rRNA sequencing. The root nodule bacteria were subjected to phenotypic clustering and diversity studies using biochemical kits, including Hi-Media Carbokit™, Enterobacteriaceae™ identification kit, ERIC-PCR, and 16S ARDRA. All the strains showed growth on Ashby's N-free media over 7 generations, indicative of presumptive nitrogen fixation and further confirmed by amplification of the nifH gene. None of the strains showed the capability to renodulate the host plant, neither alone nor in combination with standard rhizobial strains, which was further confirmed by the absence of nodC bands in PCR assay. The results clearly indicate the common existence of nonrhizobial microflora inside the root nodules of legumes, which were thought to be colonized only by rhizobia and were responsible for N2 fixation in leguminous crops. However, with the recent discovery of nodule endophytes from a variety of legumes, as also observed here, it can be assumed that symbiotic rhizobia are not all alone and that these invasive endophytes belonging to various bacterial genera are more than just opportunistic colonizers of specialized nodule niche. [ABSTRACT FROM AUTHOR]
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- 2015
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226. Antigenic affinities of the root-nodule bacteria of legumes
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Graham, P. H.
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- 1963
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227. Diversity of new root nodule bacteria from Erythrina velutina Willd., a native legume from the Caatinga dry forest (Northeastern Brazil)
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MENEZES, K. A. S., NUNES, G. F. de O., SAMPAIO, A. A., SILVA, A. F. da, SOUZA, L. S. B. de, GAVA, C. A. T., MARTINS, L. M. V., FERNANDES JUNIOR, P. I., KELLY ALEXSANDRA SOUZA MENEZES, Departamento de Tecnologia e Ciências Sociais, Universidade do Estado da Bahia, Juazeiro, BA, GERSIKA FAKIRRA DE OLIVEIRA NUNES, Departamento de Tecnologia e Ciências Sociais, Universidade do Estado da Bahia, Juazeiro, BA, ALINE ARAUJO SAMPAIO, Departamento de Tecnologia e Ciências Sociais, Universidade do Estado da Bahia, Juazeiro, BA, ALEKSANDRO FERREIRA DA SILVA, Universidade Federal Rural de Pernambuco, Recife, PE, LAYANE SILVA BARBOSA DE SOUZA, Departamento de Tecnologia e Ciências Sociais, Universidade do Estado da Bahia, Juazeiro, BA, CARLOS ALBERTO TUAO GAVA, CPATSA, LINDETE MÍRIA VIEIRA MARTINS, Departamento de Tecnologia e Ciências Sociais, Universidade do Estado da Bahia, Juazeiro, BA, and PAULO IVAN FERNANDES JUNIOR, CPATSA.
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Planta nativa ,Mulungu ,Fixação biológica de azoto ,Tree legumes ,Rizóbio ,Biological nitrogen fixation ,Rhizobia ,Caatinga ,Inoculant ,Box-PCR ,Bactérias isoladas de nódulos ,Leguminosa arbórea ,Inoculante ,Erythrina velutina - Abstract
This study aims to evaluate the phenotypical characteristics of bacterial isolates from mulungu (Erythrina velutina Willd.) nodules and determinate their Box-PCR fingerprinting. All bacteria were evaluated by the following phenotypic characteristics: growth rate, pH change, colony color and mucus production. The bacterial isolates able to re-nodulate the original host were also evaluated regarding its tolerance to increased salinity and different incubation temperatures, ability to growth using different carbon sources, intrinsic antibiotic resistance and ?in vitro? auxin biosynthesis. The molecular fingerprints were set up using the Box-PCR technique and the isolates were clustered by their profiles. Among the 22 bacterial isolates obtained, eight were able to re-nodulate the original host. Among the nodule inducing isolates, some were tolerant to 1% of NaCl and 39° C and all of them metabolized the maltose, fructose, glucose, sucrose and arabinose, were resistant to rifampicin and produced auxin. The bacteria showed low genetic similarity among them and reference strains, which indicates the great genetic variability of the isolates. The results of this work are the first reports about the bacterial isolates able to nodulate this species. A more deep study of these bacteria may reveal the existence of isolates tolerant to environmental stresses and suitable as a future mulungu inoculant.
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- 2016
228. Symbiotic nitrogen contribution and biodiversity of root-nodule bacteria nodulating Psoralea species in the Cape Fynbos, South Africa
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Sheku Alfred Kanu and Felix D. Dakora
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Root nodule ,Symbiosis ,Psoralea ,biology ,Psoralea pinnata ,Botany ,Mesorhizobium ,Soil Science ,Rhizobium ,biology.organism_classification ,Phaseoleae ,Microbiology ,Repens - Abstract
The genus Psoralea (tribe Psoraleae, family Leguminosae) is indigenous to the Cape fynbos of South Africa and little is known about its symbiosis and/or adaptation. The aim of this study was to assess root nodulation and N2 fixation in eight of the 50 Psoralea species, as well as the biodiversity of their associated nodulating microsymbionts. The eight species studied (namely, Psoralea pinnata, Psoralea aphylla, Psoralea aculeata, Psoralea monophylla, Psoralea repens, Psoralea laxa, Psoralea asarina and Psoralea restioides) all had round-shaped, determinate type (desmodioid) nodules, and data from 15N natural abundance showed that they obtained 60–88% of their N nutrition from symbiotic fixation. These Psoralea species also transported their fixed-N as ureides (allantoin and allantoic acid) in the xylem stream, a symbiotic trait that links them very closely to the tribe Phaseoleae. Bacteria isolated from root nodules of the eight Psoralea species varied in phenotypic characteristics, nodulation promiscuity, and N2-fixing efficacy. Furthermore, 16S rDNA gene sequence data showed that Psoralea species can form root nodules with different soil bacteria, including Rhizobium, Mesorhizobium and Burkholderia strains. This is not only evidence of nodulation promiscuity, but also an indication of the species’ adaptation to the nutrient-poor, low-N, sandy acidic soils of the Cape fynbos.
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- 2012
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229. Phenotypic and genotypic characterisation of root nodule bacteria nodulating Millettia pinnata (L.) Panigrahi, a biodiesel tree
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Elizabeth Watkin, Guijun Yan, Julie A. Plummer, Elizabeth L. Barbour, and Ni Luh Arpiwi
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Bradyrhizobium yuanmingense ,Root nodule ,biology ,Millettia pinnata ,Pongamia ,Botany ,Nitrogen fixation ,Soil Science ,Rhizobium ,Plant Science ,biology.organism_classification ,Bradyrhizobium ,Rhizobia - Abstract
Milletia pinnata is a leguminous tropical tree that produces seed oil suitable for biodiesel and is targeted to be planted on marginal land associated with nitrogen poor soil. This study aimed to identify effective rhizobia species for M. pinnata. Soil samples were collected from M. pinnata grown in Kununurra, Australia. Rhizobia were trapped, characterised and sequenced for 16S rRNA, atpD, dnaK and recA genes. Forty isolates tolerated pH 7 – 9, temperatures 29 – 37 °C, salinity below 1 % NaCl, and had optimal growth on mannitol, arabinose or glutamate as a single carbon source, a few grew on sucrose and none grew on lactose. Inoculation of isolates increased shoot dry weight of M. pinnata’s seedlings in nitrogen minus media. Slow-growing isolates were closely related to Bradyrhizobium yuanmingense, Bradyrhizobium sp. DOA10, Bradyrhizobium sp. ORS305 and B. liaoningense LMG 18230T. The fast-growing isolates related to Rhizobium sp. 8211, R. miluonense CCBAU 41251T, R miluonense CC-B-L1, Rhizobium sp. CCBAU 51330 and Rhizobium sp. 43015 Millettia pinnata was effectively nodulated by slow-growing isolates related to Bradyrhizobium yuanmingense, Bradyrhizobium sp. DOA10 Bradyrhizobium sp. ORS305, B. liaoningense LMG 18230T and fast-growing isolates related Rhizobium sp. 8211, R. miluonense, Rhizobium sp. CCBAU 51330 and Rhizobium sp. 43015
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- 2012
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230. Novel root nodule bacteria belonging to the genus Caulobacter
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A.J. Antony Masilamani, Prabhavati Edulamudi, Veera Mallaiah Konada, and Venkata Ramana Sai Gopal Divi
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biology ,Caulobacter ,Botany ,Bacterial taxonomy ,Alphaproteobacteria ,Rhizobium ,Ribosomal RNA ,biology.organism_classification ,16S ribosomal RNA ,Applied Microbiology and Biotechnology ,Macrotyloma ,Rhizobia - Abstract
Aims: Aim of this study is to determine the genetic variation of rhizobia associated with horse gram [Macrotyloma uniflorum (Lam.) Verdc.] plants grown in different regions of Andhra Pradesh, India. Methods and Results: Four representative isolates having most representative characters from the previous characterization were selected for 16S rRNA sequence. The sequences were submitted to the NCBI GenBank and Ribosomal Database Project (RDP). The isolates HGR-4, 6 and 13 showed more than 99% homology between them and they were grouped with Rhizobium reference strains where as the isolate HGR-25 showed 87·1, 87·4 and 87·2% homology with the isolates HGR-4, 6 and 13, respectively, and were grouped with reference strains for Caulobacter. The nodulation ability of these isolates on horse gram was confirmed by inoculation tests. Conclusions: The isolate HGR-25 was identified as Caulobacter isolated from the plants growing in soil samples collected from Khareemnagar district, Andhra Pradesh, India. Inoculation tests revealed that Caulobacter formed nodules on horse gram. It was also confirmed by RDP. Significance and Impact of the Study: This is the first report that a legume was nodulated by a member of the genus Caulobacter, which belongs to the family Caulobacteriaceae in the order Caulobacterales of Alphaproteobacteria.
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- 2011
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231. Genetic characterization of root-nodule bacteria associated with Acacia salicina and A. stenophylla (Mimosaceae) across south-eastern Australia
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Mohammad S. Hoque, Linda M. Broadhurst, and Peter H. Thrall
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DNA, Bacterial ,Devosia ,food.ingredient ,Molecular Sequence Data ,Acacia ,Biology ,Microbiology ,food ,RNA, Ribosomal, 16S ,Botany ,Phyllobacterium ,Acacia stenophylla ,Symbiosis ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics ,Genetic diversity ,Bacteria ,Ecology ,Australia ,Mesorhizobium ,Genetic Variation ,General Medicine ,Acacia salicina ,biology.organism_classification ,Biota ,Rhizobium ,Root Nodules, Plant ,Polymorphism, Restriction Fragment Length - Abstract
Symbiotic relationships between legumes and nitrogen-fixing soil micro-organisms are of ecological importance in plant communities worldwide. For example, nutrient-poor Australian soils are often dominated by shrubby legumes (e.g. species of Acacia). However, relatively few studies have quantified patterns of diversity, host-specificity and effectiveness of these ecologically important plant–microbe interactions. In this study, 16S rRNA gene sequence and PCR-RFLP analyses were used to examine bacterial strains isolated from the root nodules of two widespread south-eastern Australian legumes, Acacia salicina and Acacia stenophylla, across nearly 60 sites. The results showed that there was extensive genetic diversity in microbial populations, including a broad range of novel genomic species. While previous studies have suggested that most native Australian legumes nodulate primarily with species of the genus Bradyrhizobium, our results indicate significant associations with members of other root-nodule-forming bacterial genera, including Rhizobium, Ensifer, Mesorhizobium, Burkholderia, Phyllobacterium and Devosia. Genetic analyses also revealed a diverse suite of non-nodulating bacterial endophytes, only a subset of which have been previously recorded. Although the ecological roles of these endosymbionts are not well understood, they may play both direct and indirect roles in promoting plant growth, nodulation and disease suppression.
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- 2011
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232. Study Data from Institute of Biochemistry and Genetics Update Knowledge of Genetics (Genetic Diversity and Phylogeny of Root Nodule Bacteria Isolated From Nodules of Plants of the Lupinaster Genus Inhabiting the Southern Urals)
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Bacteria -- Analysis ,Biodiversity -- Analysis ,Genetic research -- Analysis ,Biochemistry -- Analysis ,Phylogeny -- Analysis ,Plants (Organisms) -- Analysis ,Genes ,Anopheles ,Editors ,Social science research ,Biological sciences ,Health - Abstract
2019 JUN 11 (NewsRx) -- By a News Reporter-Staff News Editor at Life Science Weekly -- Data detailed on Life Science Research - Genetics have been presented. According to news [...]
- Published
- 2019
233. The symbiosis between oriental goat’s rue and the root nodule bacteria Rhizobium galegae: Specificity and competitiveness
- Author
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V. A. Vakhitov, Al. Kh. Baimiev, A. V. Chemeris, I. I. Gubaidullin, An. Kh. Baimiev, and Kh. M. Baimiev
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Rhizosphere ,Agricultural microbiology ,biology ,Symbiosis ,Genetic variation ,Botany ,Rhizobium ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Biochemistry ,Galega ,Rhizobium galegae ,RAPD - Abstract
Competitiveness and genetic variation of the Rhizobium galegae strains from the collection of the All-Russia Institute of Agricultural Microbiology, Russian Academy of Agricultural Sciences, causing nodulation of oriental goat's rue under conditions of Bashkortostan soils (lacking this rhizobial species) were studied. It was demonstrated that of all the tested strains, the strains CIAM 0702 and CIAM 0704, each carrying two megaplasmids of 1500 and 2000 MDa, were the most competitive. RAPD (random amplified polymorphic DNA) analysis showed that R. galegae strains were able to intensively exchange the genetic material in the host plant rhizosphere. We did not succeed in detecting the local root nodule bacteria that were either initially able to infect oriental goat's rue or had adapted to infecting this species due to various genetic rearrangements.
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- 2007
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234. [Root Nodule Bacteria Sinorhizobium meliloti: Tolerance to Salinity and Bacterial Genetic Determinants]
- Author
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M L, Roumiantseva and V S, Muntyan
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Salinity ,Polymorphism, Genetic ,Osmolar Concentration ,Gene Expression Regulation, Bacterial ,Salt Tolerance ,Droughts ,Betaine ,Gene Frequency ,Genes, Bacterial ,Root Nodules, Plant ,Symbiosis ,Alleles ,Soil Microbiology ,Medicago sativa ,Sinorhizobium meliloti - Abstract
The theoretical and experimental data on salt tolerance of root nodule bacteria Sinorhizobium meliloti (Ensifer meliloti), an alfalfa symbiont, and on genetic determination of this feature are reviewed. Extensive data on the genes affecting adaptation of proteobacteria are provided, as well as on the groups of genes with activity depending on the osmolarity of the medium. Structural and functional polymorphism of the bet genes involved in betaine synthesis and transport in S. meliloti is discussed. The phenotypic and. genotypic polymorphism in 282 environmental rhizobial strains isolated from the centers of alfalfa diversity affected by aridity and salinity is discussed. The isolates from the Aral Sea area and northern Caucasus were shown to possess the betC gene represented by two types of alleles: the dominant A-type allele found in Rm 1021 and the less common divergent E-type allele, which was revealed in regions at the frequencies at the frequencies of 0.35 and 0.48, respectively. In the isolates with the salt-tolerant phenotype, which were isolated from root nodules and subsequently formed less effective symbioses with alfalfa, the frequency of E-type alleles was 2.5 times higher. Analysis of the nucleotide and amino acid sequences of the E-type allele of the betC gene revealed that establishment of this allele in the population was a result of positive selection. It is concluded that diversification of the functionally diverse bet genes occurring in S. meliloti affects the salt tolerance and symbiotic effectivity of rhizobia.
- Published
- 2015
235. Indirect methods of determination of activity of root-nodule bacteria
- Author
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Mishustin, Ye. N. and Shemakhanova, N. M.
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- 1980
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236. Phenotypic and biochemical characterization of root nodule bacteria naturally associated with woody tree legumes in Saudi Arabia.
- Author
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Alshaharani TS and Shetta ND
- Subjects
- Bacteria classification, Bacteriological Techniques, Hydrogen-Ion Concentration, Nitrates metabolism, Saudi Arabia, Soil chemistry, Temperature, Bacteria cytology, Bacteria metabolism, Fabaceae microbiology, Root Nodules, Plant microbiology
- Abstract
Thirty root-nodulating bacteria isolates were obtained from the roots of Acacia ampliceps (Maslin), A. ehrenbergiana (Hayne.), A. saligna (Labill.), A. seyal (Del.), A. tortilis (Forssk.), A. tortilis subsp. raddiana (Savi.), Leucaena leucocephala (Lam.) and Vicia faba (L.) trees growing in the Riyadh region. The isolates' phenotypic and biochemical properties were characterized by assessing colony appearance, growth rate, resistance to antibiotics and heavy metals, and tolerance to salinity, elevated temperature and pH. All isolates had same colony morphology and grew on yeast extract mannitol and tryptone yeast agar, but not MGS media. The results also revealed considerable diversity among the isolates, which exhibited different patterns of resistance to abiotic stresses. Most isolates tolerated temperatures up to 37 degrees C and could grow from pH 5.5-8.5 and at a high NaCl concentration (2% w/v). The majority of isolates could utilize a variety of carbohydrates. Most of the isolates displayed resistance to antibiotics in the 75 microg ml(-1) range, with approximately 100 pg ml(-1) the maximum concentration at which growth was observed. All isolates were sensitive to aluminum and resistant to other heavy metals tested, and they were able to reduce nitrate and hydrolyze urea.
- Published
- 2015
237. The genetic diversity of root nodule bacteria associated with the Australian legume Acacia longifolia was examined in two stages of invasion of a coastal sand dune system. Results suggest the introduction of exotic bradyrhizobia with the plant
- Author
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Fernandes, Joao, Santos, Ricardo, Fernandes, Nuno, Oliveira, Fernanda, and Cadete, Manuela
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Biological diversity -- Analysis ,Rhizobium -- Genetic aspects ,Rhizobium -- Growth ,Company growth ,Biological sciences - Abstract
Mycobacterium parascrofulaceum were isolated from samples taken from Norris Geyser Basin, Yellowstone National Park in a system composed of two acidic springs. The growth and survival PCR assays confirmed the origin of the strain.
- Published
- 2007
238. Influence of the introduction of Caragana arborescens on the composition of its root-nodule bacteria
- Author
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K. G. Ptitsyn, An. Kh. Baymiev, and Al. Kh. Baimiev
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Genetic diversity ,Root nodule ,Symbiosis ,biology ,Botany ,Mesorhizobium ,Caragana ,16S ribosomal RNA ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Microbiology ,Bacteria ,RAPD - Abstract
The genetic diversity and phylogeny of root module bacteria entering into symbiotic relations with Caragana arborescens introduced on the territory of the Republic of Bashkortostan (RB) were studied. Analysis of the 85 strains isolated from root-nodules showed that, according to the DNA polymorphism revealed by RAPD analysis, they can be divided into 12 groups. It was found that, both in natural habitats and on the territory of the RB, Caragana arborescens is primarily nodulated by Mesorhizobium bacteria whose 16S rRNA gene sequences differ to some degree from those of the bacteria described earlier by Chinese authors. Bacteria assigned to the genus Phyllobacterium based on their 16S rRNA gene sequences were also revealed in plants growing on the territory of the RB.
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- 2010
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239. Tetraponeraants have gut symbionts related to nitrogen–fixing root–nodule bacteria
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Johan Billen, Steven Van Borm, Alfred Buschinger, and Jacobus J. Boomsma
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Male ,Honeydew ,General Biochemistry, Genetics and Molecular Biology ,Microbiology ,Symbiosis ,Nitrogen Fixation ,RNA, Ribosomal, 16S ,Animals ,Phylogeny ,General Environmental Science ,Rhizosphere ,Bacteria ,General Immunology and Microbiology ,biology ,Ants ,fungi ,food and beverages ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,Intestines ,RNA, Bacterial ,Tetraponera ,Burkholderia ,bacteria ,Rhizobium ,Female ,Pseudomyrmecinae ,General Agricultural and Biological Sciences ,Research Article - Abstract
Some Tetraponera ants (Formicidae, Pseudomyrmecinae) subsist almost entirely on amino acid deficient honeydew secretions of pseudococcids and harbour a dense aggregation of bacterial symbionts in a unique pouch-shaped organ at the junction of the midgut and the intestine. The organ is surrounded by a network of intruding tracheae and Malpighian tubules, suggesting that these bacteria are involved in the oxidative recycling of nitrogen-rich metabolic waste. We have examined the ultrastructure of these bacteria and have amplified, cloned and sequenced ribosomal RNA-encoding genes, showing that the ant pouch contains a series of close relatives of Flavobacteria and Rhizobium, Methylobacterium, Burkholderia and Pseudomonas nitrogen-fixing root-nodule bacteria. We argue that pouch bacteria have been repeatedly 'domesticated' by the ants as nitrogen-recycling endosymbionts. This ant-associated community of mutualists is, to our knowledge, the first finding of symbionts related to root-nodule bacteria in animals.
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- 2002
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240. High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
- Author
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Reeve, Wayne [Murdoch Univ., WA (Australia). Centre for Studies]
- Published
- 2016
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241. The rhizobia of lupinus densiflorus Benth., with some remarks on the classification of root nodule bacteria
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Abdel-Ghaffar, A. S. and Jensen, H. L.
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- 1966
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242. Characterization of Root-Nodule Bacteria Isolated from Hedysarum spinosissimum L, Growing in Mining Sites of Northeastern Region of Morocco
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Sbabou, Laila, primary
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- 2016
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243. Diversity and symbiotic effectiveness of Adesmia spp. root nodule bacteria in central and southern Chile
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Gerding, Macarena, primary, Oyarzúa, Pía, additional, García, Leonardo, additional, Fischer, Susana, additional, Norambuena, Carolina, additional, Barahona, Viviana, additional, del Pozo, Alejandro, additional, and Ovalle, Carlos, additional
- Published
- 2016
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- View/download PDF
244. Diversity of new root nodule bacteria from Erythrina velutina Willd., a native legume from the Caatinga dry forest (Northeastern Brazil)
- Author
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Menezes, Kelly Alexsandra Souza, primary, Nunes, Gersika Fakirra de Oliveira, additional, Sampaio, Aline Araujo, additional, Silva, Aleksandro Ferreira, additional, Souza, Layane Silva Barbosa, additional, Gava, Carlos Alberto Tuão, additional, Martins, Lindete Míria Vieira, additional, and Fernandes-Júnior, Paulo Ivan, additional
- Published
- 2016
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245. Insecticide and Salt Tolerance of Plant Growth Promoting Root Nodule Bacteria
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Nithyakalyani, V., primary, Kannan, M., additional, and Anandan, Ramya, additional
- Published
- 2016
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246. Novel root-nodule bacteria associated with Vachellia karroo
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Nxumalo, K.M., primary, Boshoff, F.S., additional, Beukes, C.W., additional, Steenkamp, E.T., additional, and Venter, S.N., additional
- Published
- 2016
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247. High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil
- Author
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Reeve, Wayne [Murdoch Univ., Murdoch (Australia)]
- Published
- 2015
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248. Efficacy of biological preparations of soybean root nodule bacteria modified with a homologous lectin
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D. M. Sytnikov, S. Ya. Kots, and V.K. Datsenko
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Root nodule ,fungi ,food and beverages ,Virulence ,Lectin ,Biology ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Biochemistry ,Microbiology ,Rhizobia ,Glycine ,Homologous chromosome ,biology.protein ,Bacteria ,Bradyrhizobium japonicum - Abstract
The effect of various biopreparations of the root nodule bacterium Bradyrhizobium japonicum, modified with a homologous lectin, on the virulence of rhizobia, the nitrogen-fixing activity of root nodules, and the productivity of the soybean (Glycine max (L.) Merr.) was studied. It was shown that a homologous lectin, added to a bacterial suspension when manufacturing biopreparations on a liquid and solid support, increases the efficiency of the soybean symbiotic system and the productivity of the host plant. The potentialities of using bacterial preparations modified with a homologous lectin are discussed.
- Published
- 2007
- Full Text
- View/download PDF
249. Phenotypic and biochemical characterization of root nodule bacteria naturally associated with woody tree legumes in Saudi Arabia
- Author
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Thobayet Safar, Alshaharani and Nader Desouky, Shetta
- Subjects
Bacteriological Techniques ,Soil ,Nitrates ,Bacteria ,Saudi Arabia ,Temperature ,Fabaceae ,Hydrogen-Ion Concentration ,Root Nodules, Plant - Abstract
Thirty root-nodulating bacteria isolates were obtained from the roots of Acacia ampliceps (Maslin), A. ehrenbergiana (Hayne.), A. saligna (Labill.), A. seyal (Del.), A. tortilis (Forssk.), A. tortilis subsp. raddiana (Savi.), Leucaena leucocephala (Lam.) and Vicia faba (L.) trees growing in the Riyadh region. The isolates' phenotypic and biochemical properties were characterized by assessing colony appearance, growth rate, resistance to antibiotics and heavy metals, and tolerance to salinity, elevated temperature and pH. All isolates had same colony morphology and grew on yeast extract mannitol and tryptone yeast agar, but not MGS media. The results also revealed considerable diversity among the isolates, which exhibited different patterns of resistance to abiotic stresses. Most isolates tolerated temperatures up to 37 degrees C and could grow from pH 5.5-8.5 and at a high NaCl concentration (2% w/v). The majority of isolates could utilize a variety of carbohydrates. Most of the isolates displayed resistance to antibiotics in the 75 microg ml(-1) range, with approximately 100 pg ml(-1) the maximum concentration at which growth was observed. All isolates were sensitive to aluminum and resistant to other heavy metals tested, and they were able to reduce nitrate and hydrolyze urea.
- Published
- 2015
250. Morphological, genetic and symbiotic characterization of root nodule bacteria isolated from Bambara groundnuts (Vigna subterranea L. Verdc) from soils of Lake Victoria basin, western Kenya
- Author
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Benson Onyango
- Subjects
Plant Science ,Agronomy and Crop Science ,General Biochemistry, Genetics and Molecular Biology ,Food Science - Published
- 2015
- Full Text
- View/download PDF
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