201. Potential Energy Surface-Based Automatic Deduction of Conformational Transition Networks and Its Application on Quantum Mechanical Landscapes of d-Glucose Conformers
- Author
-
Koichi Ohno, Takeaki Uno, Hiroaki Tanaka, Hiroko Satoh, Kumiyo Nakakoji, Tomohiro Oda, and Satoru Iwata
- Subjects
Models, Molecular ,010304 chemical physics ,Chemistry ,Anharmonicity ,Molecular Conformation ,Hypersphere ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Computer Science Applications ,Maxima and minima ,Bond length ,Kinetics ,Glucose ,Computational chemistry ,Distortion ,0103 physical sciences ,Potential energy surface ,Quantum Theory ,Thermodynamics ,Statistical physics ,Physical and Theoretical Chemistry ,Conformational isomerism ,Quantum - Abstract
This paper describes our approach that is built upon the potential energy surface (PES)-based conformational analysis. This approach automatically deduces a conformational transition network, called a conformational reaction route map (r-map), by using the Scaled Hypersphere Search of the Anharmonic Downward Distortion Following method (SHS-ADDF). The PES-based conformational search has been achieved by using large ADDF, which makes it possible to trace only low transition state (TS) barriers while restraining bond lengths and structures with high free energy. It automatically performs sampling the minima and TS structures by simply taking into account the mathematical feature of PES without requiring any a priori specification of variable internal coordinates. An obtained r-map is composed of equilibrium (EQ) conformers connected by reaction routes via TS conformers, where all of the reaction routes are already confirmed during the process of the deduction using the intrinsic reaction coordinate (IRC) method. The postcalculation analysis of the deduced r-map is interactively carried out using the RMapViewer software we have developed. This paper presents computational details of the PES-based conformational analysis and its application to d-glucose. The calculations have been performed for an isolated glucose molecule in the gas phase at the RHF/6-31G level. The obtained conformational r-map for α-d-glucose is composed of 201 EQ and 435 TS conformers and that for β-d-glucose is composed of 202 EQ and 371 TS conformers. For the postcalculation analysis of the conformational r-maps by using the RMapViewer software program we have found multiple minimum energy paths (MEPs) between global minima of
- Published
- 2016