225,786 results on '"and, Chow"'
Search Results
202. Alcohol’s Harm to Others: Victim Data on Prevalence and Risk Factors in a Nationwide Population Survey
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Roystonn, Kumarasan, Koh, Yen Sin, Sambasivam, Rajeswari, Zhang, Yunjue, Abdin, Edimansyah, Chong, Siow Ann, Lee, Cheng, Ma, Stefan, Chow, Wai Leng, and Subramaniam, Mythily
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- 2024
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203. Hypoxia- and Postirradiation reoxygenation-induced HMHA1/ARHGAP45 expression contributes to cancer cell invasion in a HIF-dependent manner
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Lee, Peter W. T., Suwa, Tatsuya, Kobayashi, Minoru, Yang, Hui, Koseki, Lina R., Takeuchi, Satoshi, Chow, Christalle C. T., Yasuhara, Takaaki, and Harada, Hiroshi
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- 2024
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204. Progressive multifocal leukoencephalopathy and spectrum of predisposing conditions: a 20-year retrospective cohort study in a tertiary center in São Paulo, Brazil
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Mari, Julia Ferreira, de Miranda, Érique José Farias Peixoto, Mendes-Correa, Maria Cassia, Chow, Felicia C., and Vidal, José Ernesto
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- 2024
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205. Soft, body conformable electronics for thermoregulation enabled by kirigami
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Chow, Lung, Zhao, Guangyao, Wu, Pengcheng, Huang, Xingcan, Li, Jiyu, Li, Jian, Wang, Wanying, Guo, Guihuan, Li, Zhiyuan, Wang, Jiachen, Zhou, Jingkun, Yang, Yawen, Gao, Yuyu, Zhang, Binbin, Zhang, Qiang, Li, Dengfeng, Huang, Ya, Yao, Kuanming, Lu, Jian, and Yu, Xinge
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- 2024
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206. The relation between reading and externalizing behavior: a correlational meta-analysis
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Pickren, Sage E., Torelli, Jessica N., Miller, Anna H., and Chow, Jason C.
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- 2024
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207. Frailty in patients with IDH-mutant gliomas: experience from a high-volume tumor center
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Bray, David P., Stubbs, Nolan M., Chow, Jocelyn, Jahangiri, Arman, Nduom, Edjah K., Olson, Jeffrey J., and Hoang, Kimberly B.
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- 2024
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208. How does dispositional mindfulness enhance co-parenting quality? A dyadic investigation of the mediating roles of self- and other- forgiveness
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Chow, Tak Sang, Hung, San, Siu, Tiffany Sok U, Ng, Christine, and Ho, Po Lam
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- 2024
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209. Peri-surgical imaging of intersex and gender diverse youths
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LaRosa, Michelle X., Chikarmane, Sona A., Yu, Richard N., Grimstad, Frances, and Chow, Jeanne S.
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- 2024
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210. Lived experience perspectives of factors that influence mental health recovery in Singapore: a thematic analysis
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Kuek, Jonathan Han Loong, Raeburn, Toby, Chow, Melissa Yan Zhi, and Wand, Timothy
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- 2024
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211. How and when internal marketing orientation affects frontline employees’ positive word of mouth: insights from a hotel in China
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Hong, Zijing, Xu, Angela J., Loi, Raymond, and Chow, Cheris W.C.
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- 2024
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212. Unleashing entrepreneurial potential: venture creation and self-directed experiential learning on social media amongst secondary school-aged business owners
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Jim, Vanessa H.C., Chow, Jessie M.L., and Ward, Donald F.B.
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- 2024
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213. Guidelines in Wastewater-based Epidemiology of SARS-CoV-2 with Diagnosis
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Fatima, Madiha, Cao, Zhihua, Huang, Aichun, Wu, Shengyuan, Fan, Xinxian, Wang, Yi, Jiren, Liu, Zhu, Ziyun, Ye, Qiongrou, Ma, Yuan, Chow, Joseph K. F, Jia, Peng, Liu, Yangshou, Lin, Yubin, Ye, Manjun, Wu, Tong, Li, Zhixun, Cai, Cong, Zhang, Wenhai, Ding, Cheris H. Q., Cai, Yuanzhe, and Huang, Feijuan
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Quantitative Biology - Quantitative Methods - Abstract
With the global spread and increasing transmission rate of SARS-CoV-2, more and more laboratories and researchers are turning their attention to wastewater-based epidemiology (WBE), hoping it can become an effective tool for large-scale testing and provide more ac-curate predictions of the number of infected individuals. Based on the cases of sewage sampling and testing in some regions such as Hong Kong, Brazil, and the United States, the feasibility of detecting the novel coronavirus in sewage is extremely high. This study re-views domestic and international achievements in detecting SARS-CoV-2 through WBE and summarizes four aspects of COVID-19, including sampling methods, virus decay rate cal-culation, standardized population coverage of the watershed, algorithm prediction, and provides ideas for combining field modeling with epidemic prevention and control. Moreover, we highlighted some diagnostic techniques for detection of the virus from sew-age sample. Our review is a new approach in identification of the research gaps in waste water-based epidemiology and diagnosis and we also predict the future prospect of our analysis.
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- 2023
214. Inhomogeneous Kaufman Measures and Diophantine Approximation
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Chow, Sam, Zafeiropoulos, Agamemnon, and Zorin, Evgeniy
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Mathematics - Number Theory ,Mathematics - Dynamical Systems - Abstract
We introduce an inhomogeneous variant of Kaufman's measure, with applications to diophantine approximation. In particular, we make progress towards a problem related to Littlewood's conjecture.
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- 2023
215. Exploring Multimodal Large Language Models for Radiology Report Error-checking
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Wu, Jinge, Kim, Yunsoo, Keller, Eva C., Chow, Jamie, Levine, Adam P., Pontikos, Nikolas, Ibrahim, Zina, Taylor, Paul, Williams, Michelle C., and Wu, Honghan
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Computer Science - Computation and Language ,Computer Science - Computer Vision and Pattern Recognition - Abstract
This paper proposes one of the first clinical applications of multimodal large language models (LLMs) as an assistant for radiologists to check errors in their reports. We created an evaluation dataset from real-world radiology datasets (including X-rays and CT scans). A subset of original reports was modified to contain synthetic errors by introducing three types of mistakes: "insert", "remove", and "substitute". The evaluation contained two difficulty levels: SIMPLE for binary error-checking and COMPLEX for identifying error types. At the SIMPLE level, our fine-tuned model significantly enhanced performance by 47.4% and 25.4% on MIMIC-CXR and IU X-ray data, respectively. This performance boost is also observed in unseen modality, CT scans, as the model performed 19.46% better than the baseline model. The model also surpassed the domain expert's accuracy in the MIMIC-CXR dataset by 1.67%. Notably, among the subsets (N=21) of the test set where a clinician did not achieve the correct conclusion, the LLaVA ensemble mode correctly identified 71.4% of these cases. However, all models performed poorly in identifying mistake types, underscoring the difficulty of the COMPLEX level. This study marks a promising step toward utilizing multimodal LLMs to enhance diagnostic accuracy in radiology. The ensemble model demonstrated comparable performance to clinicians, even capturing errors overlooked by humans.
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- 2023
216. Dosimetric calibration of an anatomically specific ultra-high dose rate electron irradiation platform for preclinical FLASH radiobiology experiments
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Wang, Jinghui, Melemenidis, Stavros, Manjappa, Rakesh, Viswanathan, Vignesh, Ashraf, Ramish M., Levy, Karen, Skinner, Lawrie, Soto, Luis A., Chow, Stephanie, Lau, Brianna, Ko, Ryan B., Graves, Edward E., Yu, Amy S., Bush, Karl K., Surucu, Murat, Rankin, Erinn B., Loo Jr, Billy W., Schüler, Emil, and Maxim, Peter G.
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Physics - Medical Physics - Abstract
We characterized the dosimetric properties of a clinical linear accelerator configured to deliver ultra-high dose rate (UHDR) irradiation to mice and cell-culture FLASH radiobiology experiments. UHDR electron beams were controlled by a microcontroller and relay interfaced with the respiratory gating system. We produced beam collimators with indexed stereotactic mouse positioning devices to provide anatomically specific preclinical treatments. Treatment delivery was monitored directly with an ionization chamber, and charge measurements were correlated with radiochromic film at the entry surface of the mice. The setup for conventional (CONV) dose rate irradiation was similar but the source-to-surface distance was longer. Monte Carlo simulations and film dosimetry were used to characterize beam properties and dose distributions. The mean electron beam energies before the flattening filter were 18.8 MeV (UHDR) and 17.7 MeV (CONV), with corresponding values at the mouse surface of 17.2 MeV and 16.2 MeV. The charges measured with an external ion chamber were linearly correlated with the mouse entrance dose. Use of relay gating for pulse control initially led to a delivery failure rate of 20% ($+/-$ 1 pulse); adjustments to account for the linac latency improved this rate to <1/20. Beam field sizes for two anatomically specific mouse collimators (4x4 $cm^2$ for whole-abdomen and 1.5x1.5 $cm^2$ for unilateral lung irradiation) were accurate within <5% and had low radiation leakage (<4%). Normalizing the dose at the center of the mouse (~0.75 cm depth) produced UHDR and CONV doses to the irradiated volumes with >95% agreement. We successfully configured a clinical linear accelerator for increased output and developed a robust preclinical platform for anatomically specific irradiation, with highly accurate and precise temporal and spatial dose delivery, for both CONV and UHDR applications., Comment: Jinghui Wang and Stavros Melemenidis are co-first authors, and Emil Sch\"uler and Peter G. Maxim are co-senior/co-corresponding authors
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- 2023
217. Random Serial Dictatorship with Transfers
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Sundar, Sudharsan, Gao, Eric, Chow, Trevor, and Ding, Matthew
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Computer Science - Computer Science and Game Theory ,Economics - Theoretical Economics - Abstract
It is well known that Random Serial Dictatorship is strategy-proof and leads to a Pareto-Efficient outcome. We show that this result breaks down when individuals are allowed to make transfers, and adapt Random Serial Dictatorship to encompass trades between individuals. Strategic analysis of play under the new mechanisms we define is given, accompanied by simulations to quantify the gains from trade.
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- 2023
218. Fano Resonance in Excitation Spectroscopy and Cooling of an Optically Trapped Single Atom
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Chow, Chang Hoong, Ng, Boon Long, Prakash, Vindhiya, and Kurtsiefer, Christian
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Quantum Physics ,Physics - Atomic Physics - Abstract
Electromagnetically induced transparency (EIT) can be used to cool an atom in a harmonic potential close to the ground state by addressing several vibrational modes simultaneously. Previous experimental efforts focus on trapped ions and neutral atoms in a standing wave trap. In this work, we demonstrate EIT cooling of an optically trapped single neutral atom, where the trap frequencies are an order of magnitude smaller than in an ion trap and a standing wave trap. We resolve the Fano resonance feature in fluorescence excitation spectra and the corresponding cooling profile in temperature measurements. A final temperature of around 6 $\mu$K is achieved with EIT cooling, a factor of two lower than the previous value obtained using olarization gradient cooling., Comment: 7 pages, 6 figures
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- 2023
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219. The Picard Group of a Reductive Group over a Number Field
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Chow, Dylon
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Mathematics - Number Theory ,11E72 - Abstract
We give a description of the Picard group of a reductive group over a number field as an abelianized Galois cohomology group. It gives another approach of a result due to Labesse.
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- 2023
220. Galois Cohomology of Reductive Groups over Function Fields over $\mathbb{C}((t))$
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Chow, Dylon
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Mathematics - Number Theory ,Mathematics - Algebraic Geometry ,11E72 - Abstract
Over a global field (number field or function field of a curve over a finite field), theorems for the Galois cohomology of algebraic groups have long been known. For $F$ the function field of a curve over the formal series field $\mathbb{C}((t))$, under an additional assumption on the curve, we establish an explicit description of the localization map in Galois cohomology. This is achieved by extending the theory of $B(F,G)$ due to Kottwitz.
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- 2023
221. What Causes Polysemanticity? An Alternative Origin Story of Mixed Selectivity from Incidental Causes
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Lecomte, Victor, Thaman, Kushal, Schaeffer, Rylan, Bashkansky, Naomi, Chow, Trevor, and Koyejo, Sanmi
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Computer Science - Neural and Evolutionary Computing - Abstract
Polysemantic neurons -- neurons that activate for a set of unrelated features -- have been seen as a significant obstacle towards interpretability of task-optimized deep networks, with implications for AI safety. The classic origin story of polysemanticity is that the data contains more ``features" than neurons, such that learning to perform a task forces the network to co-allocate multiple unrelated features to the same neuron, endangering our ability to understand networks' internal processing. In this work, we present a second and non-mutually exclusive origin story of polysemanticity. We show that polysemanticity can arise incidentally, even when there are ample neurons to represent all features in the data, a phenomenon we term \textit{incidental polysemanticity}. Using a combination of theory and experiments, we show that incidental polysemanticity can arise due to multiple reasons including regularization and neural noise; this incidental polysemanticity occurs because random initialization can, by chance alone, initially assign multiple features to the same neuron, and the training dynamics then strengthen such overlap. Our paper concludes by calling for further research quantifying the performance-polysemanticity tradeoff in task-optimized deep neural networks to better understand to what extent polysemanticity is avoidable.
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- 2023
222. Photometric Metallicity and Distance for the Two RR Lyrae in Segue II and Ursa Major II Dwarf Galaxies Based on Multi-Band Light-Curves
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Ngeow, Chow-Choong and Bhardwaj, Anupam
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Multi-band light curves of two RR Lyrae variables in Segue II and Ursa Major II ultra-faint dwarf (UFD) galaxies were collected from near simultaneous observations using the Lulin One-meter Telescope in Vgri bands. Together with Gaia G-band light curves, we determined photometric metallicities using empirical relations involving pulsation period and Fourier parameter as dependent parameters. We demonstrated that the RR Lyrae photometric metallicity can be determined accurately when these empirical relations were employed at multiple wavelengths, which can potentially improve the distance determination based on RR Lyrae stars. The photometric metallicities based on our approach were found to be $-2.27\pm0.13$ dex and $-1.87\pm0.16$ dex for the RR Lyrae in Segue II and Ursa Major II UFD, respectively, with corresponding distance moduli of $17.69\pm0.15$ mag and $17.58\pm0.15$ mag, in agreement with previous literature determinations. This approach of photometric metallicity of RR Lyrae based on multi-band optical light curves will be particularly relevant for distance measurements in the era of the Vera C Rubin's Legacy Survey of Space and Time., Comment: 9 pages, 3 figures and 5 tables, AJ accepted
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- 2023
223. The $D$-module mirror conjecture for flag varieties
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Chow, Chi Hong
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Mathematics - Algebraic Geometry ,Mathematical Physics ,Mathematics - Representation Theory - Abstract
Rietsch constructed a candidate $T$-equivariant mirror LG model for any flag variety $G/P$. In this paper, we prove the following mirror symmetry prediction: the small $T\times\mathbb{G}_m$-equivariant quantum cohomology of $G/P$ equipped with quantum connection is isomorphic as $D$-modules to the Brieskorn lattice associated to the LG model equipped with Gauss-Manin connection., Comment: Reformulated main result; simplified exposition; added references
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- 2023
224. An Operator Splitting Scheme for Distributed Optimal Load-side Frequency Control with Nonsmooth Cost Functions
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Wang, Yifan, Liu, Shuai, Cao, Xianghui, and Chow, Mo-Yuen
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Mathematics - Optimization and Control - Abstract
The increasing penetration of renewable energy resources and utilization of energy storage systems pose new challenges in maintaining power system's stability. Specifically, the cost function of regulation no longer remains smooth, which complicates the task of ensuring nominal frequency and power balance, particularly in a distributed manner. This paper proposes a distributed proximal primal-dual (DPPD) algorithm, based on a modified primal-dual dynamics equipped with operator splitting technique, to address this nonsmooth frequency regulation problem on load side. By Lyapunov stability and invariance theory, we prove that DPPD algorithm achieves global asymptotic convergence to the optimal solution that minimizes the nonsmooth regulation cost, while restoring the frequency under constraints such as capacity limits of load and power flow. Finally, we demonstrate the effectiveness and robustness of DPPD algorithm by simulations on the IEEE 39-bus system.
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- 2023
225. Hierarchical Pruning of Deep Ensembles with Focal Diversity
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Wu, Yanzhao, Chow, Ka-Ho, Wei, Wenqi, and Liu, Ling
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Computer Science - Machine Learning ,Computer Science - Computer Vision and Pattern Recognition - Abstract
Deep neural network ensembles combine the wisdom of multiple deep neural networks to improve the generalizability and robustness over individual networks. It has gained increasing popularity to study deep ensemble techniques in the deep learning community. Some mission-critical applications utilize a large number of deep neural networks to form deep ensembles to achieve desired accuracy and resilience, which introduces high time and space costs for ensemble execution. However, it still remains a critical challenge whether a small subset of the entire deep ensemble can achieve the same or better generalizability and how to effectively identify these small deep ensembles for improving the space and time efficiency of ensemble execution. This paper presents a novel deep ensemble pruning approach, which can efficiently identify smaller deep ensembles and provide higher ensemble accuracy than the entire deep ensemble of a large number of member networks. Our hierarchical ensemble pruning approach (HQ) leverages three novel ensemble pruning techniques. First, we show that the focal diversity metrics can accurately capture the complementary capacity of the member networks of an ensemble, which can guide ensemble pruning. Second, we design a focal diversity based hierarchical pruning approach, which will iteratively find high quality deep ensembles with low cost and high accuracy. Third, we develop a focal diversity consensus method to integrate multiple focal diversity metrics to refine ensemble pruning results, where smaller deep ensembles can be effectively identified to offer high accuracy, high robustness and high efficiency. Evaluated using popular benchmark datasets, we demonstrate that the proposed hierarchical ensemble pruning approach can effectively identify high quality deep ensembles with better generalizability while being more time and space efficient in ensemble decision making., Comment: To appear on ACM Transactions on Intelligent Systems and Technology
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- 2023
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226. Minutes-duration Optical Flares with Supernova Luminosities
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Ho, Anna Y. Q., Perley, Daniel A., Chen, Ping, Schulze, Steve, Dhillon, Vik, Kumar, Harsh, Suresh, Aswin, Swain, Vishwajeet, Bremer, Michael, Smartt, Stephen J., Anderson, Joseph P., Anupama, G. C., Awiphan, Supachai, Barway, Sudhanshu, Bellm, Eric C., Ben-Ami, Sagi, Bhalerao, Varun, de Boer, Thomas, Brink, Thomas G., Burruss, Rick, Chandra, Poonam, Chen, Ting-Wan, Chen, Wen-Ping, Cooke, Jeff, Coughlin, Michael W., Das, Kaustav K., Drake, Andrew J., Filippenko, Alexei V., Freeburn, James, Fremling, Christoffer, Fulton, Michael D., Gal-Yam, Avishay, Galbany, Lluís, Gao, Hua, Graham, Matthew J., Gromadzki, Mariusz, Gutiérrez, Claudia P., Hinds, K-Ryan, Inserra, Cosimo, J., Nayana A., Karambelkar, Viraj, Kasliwal, Mansi M., Kulkarni, Shri, Müller-Bravo, Tomás E., Magnier, Eugene A., Mahabal, Ashish A., Moore, Thomas, Ngeow, Chow-Choong, Nicholl, Matt, Ofek, Eran O., Omand, Conor M. B., Onori, Francesca, Pan, Yen-Chen, Pessi, Priscila J., Petitpas, Glen, Polishook, David, Poshyachinda, Saran, Pursiainen, Miika, Riddle, Reed, Rodriguez, Antonio C., Rusholme, Ben, Segre, Enrico, Sharma, Yashvi, Smith, Ken W., Sollerman, Jesper, Srivastav, Shubham, Strotjohann, Nora Linn, Suhr, Mark, Svinkin, Dmitry, Wang, Yanan, Wiseman, Philip, Wold, Avery, Yang, Sheng, Yang, Yi, Yao, Yuhan, Young, David R., and Zheng, WeiKang
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Astrophysics - High Energy Astrophysical Phenomena - Abstract
In recent years, certain luminous extragalactic optical transients have been observed to last only a few days. Their short observed duration implies a different powering mechanism from the most common luminous extragalactic transients (supernovae) whose timescale is weeks. Some short-duration transients, most notably AT2018cow, display blue optical colours and bright radio and X-ray emission. Several AT2018cow-like transients have shown hints of a long-lived embedded energy source, such as X-ray variability, prolonged ultraviolet emission, a tentative X-ray quasiperiodic oscillation, and large energies coupled to fast (but subrelativistic) radio-emitting ejecta. Here we report observations of minutes-duration optical flares in the aftermath of an AT2018cow-like transient, AT2022tsd (the "Tasmanian Devil"). The flares occur over a period of months, are highly energetic, and are likely nonthermal, implying that they arise from a near-relativistic outflow or jet. Our observations confirm that in some AT2018cow-like transients the embedded energy source is a compact object, either a magnetar or an accreting black hole., Comment: 79 pages, 3 figures (main text) + 7 figures (extended data) + 2 figures (supplementary information). Published online in Nature on 15 November 2023
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- 2023
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227. Study of the Blazhko type RRc stars in the Stripe 82 region using SDSS and ZTF
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Varma, Vaidehi, Benko, Jozsef M., and Ngeow, Chow-Choong
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
RR Lyrae stars are pulsating stars, many of which also show a long-term variation called the Blazhko effect which is a modulation of amplitude and phase of the lightcurve. In this work, we searched for the incidence rate of the Blazhko effect in the first-overtone pulsating RR Lyrae (RRc) stars of the Galactic halo. The focus was on the Stripe 82 region in the Galactic halo which was studied by Sesar et al using the Sloan Digital Sky Survey (SDSS) data. In their work, 104 RR Lyrae stars were classified as RRc type. We combined their SDSS light curves with Zwicky Transient Facility (ZTF) data, and use them to document the Blazhko properties of these RRc stars. Our analysis showed that among the 104 RRc stars, 8 were rather RRd stars, and were excluded from the study. Out of remaining 96, 34 were Blazhko type, 62 were non-Blazhko type, giving the incidence rate of 35.42% for Blazhko RRc stars. The shortest Blazhko period found was 12.808 +/- 0.001 d for SDSS 747380, while the longest was 3100 +/- 126 d for SDSS 3585856. Combining SDSS and ZTF data sets increased the probability of detecting the small variations due to the Blazhko effect, and thus provided a unique opportunity to find longer Blazhko periods. We found that 85% of RRc stars had the Blazhko period longer than 200 d., Comment: 9 pages, 2 tables, 8 figures, AJ accepted
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- 2023
228. Atlas: Hybrid Cloud Migration Advisor for Interactive Microservices
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Chow, Ka-Ho, Deshpande, Umesh, Deenadhayalan, Veera, Seshadri, Sangeetha, and Liu, Ling
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Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
Hybrid cloud provides an attractive solution to microservices for better resource elasticity. A subset of application components can be offloaded from the on-premises cluster to the cloud, where they can readily access additional resources. However, the selection of this subset is challenging because of the large number of possible combinations. A poor choice degrades the application performance, disrupts the critical services, and increases the cost to the extent of making the use of hybrid cloud unviable. This paper presents Atlas, a hybrid cloud migration advisor. Atlas uses a data-driven approach to learn how each user-facing API utilizes different components and their network footprints to drive the migration decision. It learns to accelerate the discovery of high-quality migration plans from millions and offers recommendations with customizable trade-offs among three quality indicators: end-to-end latency of user-facing APIs representing application performance, service availability, and cloud hosting costs. Atlas continuously monitors the application even after the migration for proactive recommendations. Our evaluation shows that Atlas can achieve 21% better API performance (latency) and 11% cheaper cost with less service disruption than widely used solutions., Comment: To appear at EuroSys 2024
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- 2023
229. A Lightweight Routing Layer Using a Reliable Link-Layer Protocol
- Author
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Shen, Qianfeng and Chow, Paul
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Computer Science - Networking and Internet Architecture - Abstract
In today's data centers, the performance of interconnects plays a pivotal role. However, many of the underlying technologies for these interconnects have a history of several decades and existed long before data centers came into being.To better cater to the requirements of data center networks, particularly in the context of intra-rack communication, we have developed a new interconnect. This interconnect is based on a lossless link layer protocol, named RIFL. In this work, we designed and implemented RIFL Layer 2, a scalable network that supports up to multi-hundred Gbps communication. RIFL Layer 2 includes the RIFL switch and RIFL NIC. By utilizing a simple Batcher Banyan and iSLIP RIFL switch, we effectively keep the typical intra-rack latency under 400 nanoseconds. Moreover, for a 32-port 100Gbps network, under both Bernoulli arrival and bursty arrival traffic patterns, we ensure that the 99\% tail latency does not exceed 12microseconds.
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- 2023
230. Analytical model for large-scale design of sidewalk delivery robot systems
- Author
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Yang, Hai, Du, Yuchen, Le, Tho V., and Chow, Joseph Y. J.
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Computer Science - Computers and Society - Abstract
With the rise in demand for local deliveries and e-commerce, robotic deliveries are being considered as efficient and sustainable solutions. However, the deployment of such systems can be highly complex due to numerous factors involving stochastic demand, stochastic charging and maintenance needs, complex routing, etc. We propose a model that uses continuous approximation methods for evaluating service trade-offs that consider the unique characteristics of large-scale sidewalk delivery robot systems used to serve online food deliveries. The model captures both the initial cost and the operation cost of the delivery system and evaluates the impact of constraints and operation strategies on the deployment. By minimizing the system cost, variables related to the system design can be determined. First, the minimization problem is formulated based on a homogeneous area, and the optimal system cost can be derived as a closed-form expression. By evaluating the expression, relationships between variables and the system cost can be directly obtained. We then apply the model in neighborhoods in New York City to evaluate the cost of deploying the sidewalk delivery robot system in a real-world scenario. The results shed light on the potential of deploying such a system in the future.
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- 2023
231. Preference Elicitation with Soft Attributes in Interactive Recommendation
- Author
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Biyik, Erdem, Yao, Fan, Chow, Yinlam, Haig, Alex, Hsu, Chih-wei, Ghavamzadeh, Mohammad, and Boutilier, Craig
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Computer Science - Information Retrieval ,Computer Science - Artificial Intelligence - Abstract
Preference elicitation plays a central role in interactive recommender systems. Most preference elicitation approaches use either item queries that ask users to select preferred items from a slate, or attribute queries that ask them to express their preferences for item characteristics. Unfortunately, users often wish to describe their preferences using soft attributes for which no ground-truth semantics is given. Leveraging concept activation vectors for soft attribute semantics, we develop novel preference elicitation methods that can accommodate soft attributes and bring together both item and attribute-based preference elicitation. Our techniques query users using both items and soft attributes to update the recommender system's belief about their preferences to improve recommendation quality. We demonstrate the effectiveness of our methods vis-a-vis competing approaches on both synthetic and real-world datasets.
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- 2023
232. A Lens Finder Map to check claimed High-z Galaxies behind SMACS J0723.3-7327
- Author
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Chow, Alex, Li, Sung Kei, Broadhurst, Tom, Lim, Jeremy, Li, Man Cheung Alex, Nianias, James, Summers, Jake, and Windhorst, Rogier
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Astrophysics - Astrophysics of Galaxies - Abstract
The first science image released by the JWST reveals numerous galaxies in the distant background of the galaxy cluster SMACS J0723.3-7327. Some have claimed redshifts of up to $z \simeq 20$, challenging standard cosmological models for structure formation. Here, we present a lens model for SMACS J0723.3-7327 anchored on five spectroscopically-confirmed systems at $1.38 \leq z \leq 2.21$ that are multiply lensed, along with twelve other systems with proposed image counterparts sharing common colours, spectral energy distributions, and morphological features, but having unknown redshifts. Constrained only by their image positions and, where available, redshifts, our lens model correctly reproduces the positions and correctly predicts the morphologies and relative brightnesses of all these image counterparts, as well as providing geometrically-determined redshifts spanning $1.4 \lesssim z \lesssim 6.7$ for the twelve candidate multiply-lensed galaxies lacking spectroscopic measurements. From this lens model, we create a lens finder map that defines regions over which galaxies beyond a certain redshift are predicted to be multiply lensed. Applying this map to three galaxies claimed to be at $10 \lesssim z \lesssim 20$, we find no image counterparts at locations (with an uncertainty of $\sim$$0.^{\prime\prime}5$) where they ought to be sufficiently magnified to be detectable - suggesting instead that these galaxies lie at $z \lesssim 1.7-3.2$. In lieu of spectroscopy, the creation of reliable lens finder maps for cluster fields are urgently needed to test and constrain redshifts inferred from photometry for a rapidly increasing number of candidate high-$z$ galaxies found with the JWST.
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- 2023
233. Factual and Personalized Recommendations using Language Models and Reinforcement Learning
- Author
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Jeong, Jihwan, Chow, Yinlam, Tennenholtz, Guy, Hsu, Chih-Wei, Tulepbergenov, Azamat, Ghavamzadeh, Mohammad, and Boutilier, Craig
- Subjects
Computer Science - Artificial Intelligence - Abstract
Recommender systems (RSs) play a central role in connecting users to content, products, and services, matching candidate items to users based on their preferences. While traditional RSs rely on implicit user feedback signals, conversational RSs interact with users in natural language. In this work, we develop a comPelling, Precise, Personalized, Preference-relevant language model (P4LM) that recommends items to users while putting emphasis on explaining item characteristics and their relevance. P4LM uses the embedding space representation of a user's preferences to generate compelling responses that are factually-grounded and relevant w.r.t. the user's preferences. Moreover, we develop a joint reward function that measures precision, appeal, and personalization, which we use as AI-based feedback in a reinforcement learning-based language model framework. Using the MovieLens 25M dataset, we demonstrate that P4LM delivers compelling, personalized movie narratives to users.
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- 2023
234. Demystifying Embedding Spaces using Large Language Models
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Tennenholtz, Guy, Chow, Yinlam, Hsu, Chih-Wei, Jeong, Jihwan, Shani, Lior, Tulepbergenov, Azamat, Ramachandran, Deepak, Mladenov, Martin, and Boutilier, Craig
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Embeddings have become a pivotal means to represent complex, multi-faceted information about entities, concepts, and relationships in a condensed and useful format. Nevertheless, they often preclude direct interpretation. While downstream tasks make use of these compressed representations, meaningful interpretation usually requires visualization using dimensionality reduction or specialized machine learning interpretability methods. This paper addresses the challenge of making such embeddings more interpretable and broadly useful, by employing Large Language Models (LLMs) to directly interact with embeddings -- transforming abstract vectors into understandable narratives. By injecting embeddings into LLMs, we enable querying and exploration of complex embedding data. We demonstrate our approach on a variety of diverse tasks, including: enhancing concept activation vectors (CAVs), communicating novel embedded entities, and decoding user preferences in recommender systems. Our work couples the immense information potential of embeddings with the interpretative power of LLMs., Comment: Accepted to ICLR 2024
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- 2023
235. Learning to Relax: Setting Solver Parameters Across a Sequence of Linear System Instances
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Khodak, Mikhail, Chow, Edmond, Balcan, Maria-Florina, and Talwalkar, Ameet
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Mathematics - Numerical Analysis ,Statistics - Machine Learning - Abstract
Solving a linear system $Ax=b$ is a fundamental scientific computing primitive for which numerous solvers and preconditioners have been developed. These come with parameters whose optimal values depend on the system being solved and are often impossible or too expensive to identify; thus in practice sub-optimal heuristics are used. We consider the common setting in which many related linear systems need to be solved, e.g. during a single numerical simulation. In this scenario, can we sequentially choose parameters that attain a near-optimal overall number of iterations, without extra matrix computations? We answer in the affirmative for Successive Over-Relaxation (SOR), a standard solver whose parameter $\omega$ has a strong impact on its runtime. For this method, we prove that a bandit online learning algorithm--using only the number of iterations as feedback--can select parameters for a sequence of instances such that the overall cost approaches that of the best fixed $\omega$ as the sequence length increases. Furthermore, when given additional structural information, we show that a contextual bandit method asymptotically achieves the performance of the instance-optimal policy, which selects the best $\omega$ for each instance. Our work provides the first learning-theoretic treatment of high-precision linear system solvers and the first end-to-end guarantees for data-driven scientific computing, demonstrating theoretically the potential to speed up numerical methods using well-understood learning algorithms., Comment: ICLR 2024 Spotlight
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- 2023
236. Exploring Model Learning Heterogeneity for Boosting Ensemble Robustness
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Wu, Yanzhao, Chow, Ka-Ho, Wei, Wenqi, and Liu, Ling
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning - Abstract
Deep neural network ensembles hold the potential of improving generalization performance for complex learning tasks. This paper presents formal analysis and empirical evaluation to show that heterogeneous deep ensembles with high ensemble diversity can effectively leverage model learning heterogeneity to boost ensemble robustness. We first show that heterogeneous DNN models trained for solving the same learning problem, e.g., object detection, can significantly strengthen the mean average precision (mAP) through our weighted bounding box ensemble consensus method. Second, we further compose ensembles of heterogeneous models for solving different learning problems, e.g., object detection and semantic segmentation, by introducing the connected component labeling (CCL) based alignment. We show that this two-tier heterogeneity driven ensemble construction method can compose an ensemble team that promotes high ensemble diversity and low negative correlation among member models of the ensemble, strengthening ensemble robustness against both negative examples and adversarial attacks. Third, we provide a formal analysis of the ensemble robustness in terms of negative correlation. Extensive experiments validate the enhanced robustness of heterogeneous ensembles in both benign and adversarial settings. The source codes are available on GitHub at https://github.com/git-disl/HeteRobust., Comment: Accepted by IEEE ICDM 2023
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- 2023
237. Clinical applications
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Chow, Jessica, primary and Ahluwalia, Aneesha, additional
- Published
- 2025
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238. Contributors
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Ahluwalia, Aneesha, primary, Ali, Asim, additional, Altamirano, Diego, additional, Amescua, Guillermo, additional, Awidi, Abdelhalim, additional, Berry, J. Christian, additional, Bower, Kraig, additional, Caywood, Rachel, additional, Cheung, Albert Y., additional, Chow, Jessica, additional, Correa, Zelia M., additional, Crum, Amanda, additional, Daoud, Yassine, additional, Meglio, Laura Di, additional, Eghrari, Allen Omid, additional, Eisenberg, Dan, additional, Filipe, Helena Prior, additional, Fliotsos, Michael Joseph, additional, Galor, Anat, additional, Jabbour, Samir, additional, Jeffrey, Joseph H., additional, Jun, Albert S., additional, Karp, Carol L., additional, Levinson, Brett, additional, Nongpiur, Monisha E., additional, Riaz, Kamran M., additional, Sepulveda Beltran, Paula A., additional, Shekhawat, Nakul, additional, Srikumaran, Divya, additional, Vongsachang, Hursuong, additional, Wall, Sarah L., additional, Wang, Kendrick, additional, Woreta, Fasika, additional, and Zhu, Angela Y., additional
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- 2025
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- View/download PDF
239. Simulated Model and Ultrasound Trainer for Measuring Transrectal Diameter in Pediatrics
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Kurian, Jaron, Sanchez, Thomas, Nguyen, Dylan, Chow, Ellen, Park, Hannah, and Shin, Richard
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- 2024
240. Unbiased serum metabolomic analysis in cats with naturally occurring chronic enteropathies before and after medical intervention.
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Questa, Maria, Weimer, Bart, Fiehn, Oliver, Chow, Betty, Hill, Steve, Ackermann, Mark, Lidbury, Jonathan, Steiner, Joerg, Suchodolski, Jan, and Marsilio, Sina
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Cats ,Animals ,Inflammatory Bowel Diseases ,Metabolomics ,Metabolome ,Cat Diseases - Abstract
Chronic enteropathies (CE) are common disorders in cats and the differentiation between the two main underlying diseases, inflammatory bowel disease (IBD) and low-grade intestinal T-cell lymphoma (LGITL), can be challenging. Characterization of the serum metabolome could provide further information on alterations of disease-associated metabolic pathways and may identify diagnostic or therapeutic targets. Unbiased metabolomics analysis of serum from 28 cats with CE (14 cats with IBD, 14 cats with LGITL) and 14 healthy controls identified 1,007 named metabolites, of which 129 were significantly different in cats with CE compared to healthy controls at baseline. Random Forest analysis revealed a predictive accuracy of 90% for differentiating controls from cats with chronic enteropathy. Metabolic pathways found to be significantly altered included phospholipids, amino acids, thiamine, and tryptophan metabolism. Several metabolites were found to be significantly different between cats with IBD versus LGITL, including several sphingolipids, phosphatidylcholine 40:7, uridine, pinitol, 3,4-dihydroxybenzoic acid, and glucuronic acid. However, random forest analysis revealed a poor group predictive accuracy of 60% for the differentiation of IBD from LGITL. Of 129 compounds found to be significantly different between healthy cats and cats with CE at baseline, 58 remained different following treatment.
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- 2024
241. Phase I Study of ORIC-101, a Glucocorticoid Receptor Antagonist, in Combination with Enzalutamide in Patients with Metastatic Castration-resistant Prostate Cancer Progressing on Enzalutamide.
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Abida, Wassim, Hahn, Andrew, Shore, Neal, Agarwal, Neeraj, Sieber, Paul, Smith, Matthew, Dorff, Tanya, Monk, Paul, Rettig, Matthew, Patel, Rupal, Page, Anne, Duff, Maureen, Xu, Rongda, Wang, Jian, Barkund, Shravani, Pankov, Aleksandr, Wang, Amber, Junttila, Melissa, Multani, Pratik, Daemen, Anneleen, Chow Maneval, Edna, Logothetis, Christopher, and Morris, Michael
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Male ,Humans ,Prostatic Neoplasms ,Castration-Resistant ,Receptors ,Glucocorticoid ,Phenylthiohydantoin ,Benzamides ,Nitriles ,Antineoplastic Agents ,Hormonal - Abstract
PURPOSE: Increased glucocorticoid receptor (GR) signaling is a proposed compensatory mechanism of resistance to androgen receptor (AR) inhibition in metastatic castration-resistant prostate cancer (mCRPC). ORIC-101 is a potent and selective orally-bioavailable GR antagonist. PATIENTS AND METHODS: Safety, pharmacokinetic/pharmacodynamic, and antitumor activity of ORIC-101 in combination with enzalutamide were studied in patients with mCRPC progressing on enzalutamide. ORIC-101 doses ranging from 80 to 240 mg once daily were tested in combination with enzalutamide 160 mg once daily. Pharmacokinetics/pharmacodynamics was assessed after a single dose and at steady state. Disease control rate (DCR) at 12 weeks was evaluated at the recommended phase 2 dose (RP2D). RESULTS: A total of 41 patients were enrolled. There were no dose-limiting toxicities and the RP2D was selected as 240 mg of ORIC-101 and 160 mg of enzalutamide daily. At the RP2D, the most common treatment-related adverse events were fatigue (38.7%), nausea (29.0%), decreased appetite (19.4%), and constipation (12.9%). Pharmacokinetic/pharmacodynamic data confirmed ORIC-101 achieved exposures necessary for GR target engagement. Overall, for 31 patients treated at the RP2D, there was insufficient clinical benefit based on DCR (25.8%; 80% confidence interval: 15.65-38.52) which did not meet the prespecified target rate, leading to termination of the study. Exploratory subgroup analyses based on baseline GR expression, presence of AR resistance variants, and molecular features of aggressive variant prostate cancer suggested possible benefit in patients with high GR expression and no other resistance markers, although this would require confirmation. CONCLUSIONS: Although the combination of ORIC-101 and enzalutamide demonstrated an acceptable tolerability profile, GR target inhibition with ORIC-101 did not produce clinical benefit in men with metastatic prostate cancer resistant to enzalutamide.
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- 2024
242. Asian Cohort for Alzheimer's Disease (ACAD) pilot study on genetic and non‐genetic risk factors for Alzheimer's disease among Asian Americans and Canadians
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Ho, Pei‐Chuan, Yu, Wai Haung, Tee, Boon Lead, Lee, Wan‐Ping, Li, Clara, Gu, Yian, Yokoyama, Jennifer S, Reyes‐Dumeyer, Dolly, Choi, Yun‐Beom, Yang, Hyun‐Sik, Vardarajan, Badri N, Tzuang, Marian, Lieu, Kevin, Lu, Anna, Faber, Kelley M, Potter, Zoë D, Revta, Carolyn, Kirsch, Maureen, McCallum, Jake, Mei, Diana, Booth, Briana, Cantwell, Laura B, Chen, Fangcong, Chou, Sephera, Clark, Dewi, Deng, Michelle, Hong, Ting Hei, Hwang, Ling‐Jen, Jiang, Lilly, Joo, Yoonmee, Kang, Younhee, Kim, Ellen S, Kim, Hoowon, Kim, Kyungmin, Kuzma, Amanda B, Lam, Eleanor, Lanata, Serggio C, Lee, Kunho, Li, Donghe, Li, Mingyao, Li, Xiang, Liu, Chia‐Lun, Liu, Collin, Liu, Linghsi, Lupo, Jody‐Lynn, Nguyen, Khai, Pfleuger, Shannon E, Qian, James, Qian, Winnie, Ramirez, Veronica, Russ, Kristen A, Seo, Eun Hyun, Song, Yeunjoo E, Tartaglia, Maria Carmela, Tian, Lu, Torres, Mina, Vo, Namkhue, Wong, Ellen C, Xie, Yuan, Yau, Eugene B, Yi, Isabelle, Yu, Victoria, Zeng, Xiaoyi, St George‐Hyslop, Peter, Au, Rhoda, Schellenberg, Gerard D, Dage, Jeffrey L, Varma, Rohit, Hsiung, Ging‐Yuek R, Rosen, Howard, Henderson, Victor W, Foroud, Tatiana, Kukull, Walter A, Peavy, Guerry M, Lee, Haeok, Feldman, Howard H, Mayeux, Richard, Chui, Helena, Jun, Gyungah R, Park, Van M Ta, Chow, Tiffany W, and Wang, Li‐San
- Subjects
Biomedical and Clinical Sciences ,Biological Psychology ,Clinical Sciences ,Neurosciences ,Psychology ,Aging ,Minority Health ,Dementia ,Genetics ,Health Disparities ,Clinical Research ,Acquired Cognitive Impairment ,Alzheimer's Disease ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Clinical Trials and Supportive Activities ,Brain Disorders ,Neurodegenerative ,Prevention ,2.4 Surveillance and distribution ,Neurological ,Humans ,Alzheimer Disease ,Pilot Projects ,Asian ,Canada ,Risk Factors ,North American People ,Alzheimer's disease ,biosamples ,community-based participatory research ,dementia ,environmental ,genetics ,Geriatrics ,Clinical sciences ,Biological psychology - Abstract
IntroductionClinical research in Alzheimer's disease (AD) lacks cohort diversity despite being a global health crisis. The Asian Cohort for Alzheimer's Disease (ACAD) was formed to address underrepresentation of Asians in research, and limited understanding of how genetics and non-genetic/lifestyle factors impact this multi-ethnic population.MethodsThe ACAD started fully recruiting in October 2021 with one central coordination site, eight recruitment sites, and two analysis sites. We developed a comprehensive study protocol for outreach and recruitment, an extensive data collection packet, and a centralized data management system, in English, Chinese, Korean, and Vietnamese.ResultsACAD has recruited 606 participants with an additional 900 expressing interest in enrollment since program inception.DiscussionACAD's traction indicates the feasibility of recruiting Asians for clinical research to enhance understanding of AD risk factors. ACAD will recruit > 5000 participants to identify genetic and non-genetic/lifestyle AD risk factors, establish blood biomarker levels for AD diagnosis, and facilitate clinical trial readiness.HighlightsThe Asian Cohort for Alzheimer's Disease (ACAD) promotes awareness of under-investment in clinical research for Asians. We are recruiting Asian Americans and Canadians for novel insights into Alzheimer's disease. We describe culturally appropriate recruitment strategies and data collection protocol. ACAD addresses challenges of recruitment from heterogeneous Asian subcommunities. We aim to implement a successful recruitment program that enrolls across three Asian subcommunities.
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- 2024
243. Cosmetic Directors on ACGME Program Requirements: A Cross-Sectional Survey
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Minkis, Kira, Stratman, Erik J, Shi, Victoria J, Greywal, Tanya, Hu, Jenny C, Suozzi, Kathleen C, Saikaly, Sami K, Ortiz, Arisa, Kang, Bianca Y, Alam, Murad, members of the AACD Regulatory, Education, Kourosh, A Shadi, Boucher, Alison, Suggs, Amanda K, Bar, Anna, Cahn, Brian, Robinson, Carolyn A, Schlick, Cynthia A, Hooper, Deirdre, Antonovich, Diana, Bolotin, Diana, Hoss, Elika, Ghareeb, Erica, Hisham, Farhana Ikmal, Alvarez, Gabriella, Kuhn, Helena, Luke, Janiene, Roberts, Jared E, Joo, Jayne, Orringer, Jeffrey S, Labadie, Jessica G, Shah, Kalee, Ward, Kimberley HM, Kelly, Kristen M, Shahabi, Ladan, Kole, Lauren CS, Tolaymat, Leila, Dave, Loma, Council, M Laurin, Chow, Maggie L, Yi, Michael D, Pearlstein, Michelle V, Eshaq, Milad, Deng, Min, Lawrence, Naomi, Vashi, Neelam A, Kibbi, Nour, Schenck, Olivia L, Elsanadi, Rachel, Farah, Ronda S, Wyles, Saranya P, Yoo, Simon S, Nadir, Umer, Petronic-Rosic, Vesna, Levin, Yakir S, and Nawas, Zeena Y
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Biomedical and Clinical Sciences ,Clinical Sciences ,members of the AACD Regulatory ,Resident Education ,and Advocacy Working Group ,Dermatology & Venereal Diseases ,Clinical sciences - Published
- 2024
244. Safety of high-dose-rate brachytherapy in patients with prostate cancer and inflammatory bowel disease: A case series.
- Author
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Thomas, Horatio, Shaheen, Haitham, Sabbagh, Ali, Abdul-Baki, Hasan, Malik, Nauman, Ayoub, Alan, Hassanzadeh, Comron, Mohamad, Osama, Hsu, I-Chow, Chen, Jie Jane, and Chau, Oi Wai
- Subjects
HDR ,brachytherapy ,high-dose-rate ,inflammatory bowel disease ,prostate cancer - Abstract
INTRODUCTION: Inflammatory bowel disease (IBD) is a relative contraindication to external beam radiation therapy (EBRT) for prostate cancer patients due to fear of increased risk of gastrointestinal (GI) toxicity. High-dose-rate (HDR) brachytherapy, capable of minimizing radiation dose to surrounding tissues, is a feasible alternative. Given limited data, this study examined the safety profile of HDR brachytherapy in this setting. MATERIAL AND METHODS: We conducted a retrospective review of patients with localized prostate cancer and IBD treated with HDR brachytherapy at the University of California San Francisco (UCSF), between 2010 and 2022. Eligibility criteria included biopsy-proven prostate cancer, no distant metastases, absence of prior pelvic radiotherapy, IBD diagnosis, and at least one follow-up visit post-treatment. RESULTS: Eleven patients were included, with a median follow-up of 28.7 months. The median dose administered was 2700 cGy (range, 1500-3150 cGy) over 2 fractions (range, 1-3 fractions). Two patients also received EBRT. Rectal spacers (SpaceOAR) were applied in seven patients. All patients experienced acute genitourinary (GU) toxicity, ten of which were grade 1 and one was grade 2. Eight patients experienced late grade 1 GU toxicity, and three patients had late grade 2 GU toxicity. GI toxicities were similarly low-grade, with six grade 1 acute toxicity, no grade 2 or higher acute toxicity, six grade 1 late toxicity, and one late grade 2 GI toxicity. No grade 3 or higher acute or late GI or GU toxicities were reported. CONCLUSIONS: HDR brachytherapy appears to be a safe and tolerable treatment modality for patients with prostate cancer and IBD, with minimal acute and late GI and GU toxicity. These findings warrant multi-institutional validation due to small sample size.
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- 2024
245. Compact CRISPR genetic screens enabled by improved guide RNA library cloning.
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Heo, Seok-Jin, Enriquez, Lauren, Federman, Scot, Chang, Amy, Mace, Rachel, Shevade, Kaivalya, Nguyen, Phuong, Litterman, Adam, Shafer, Shawn, Przybyla, Laralynne, and Chow, Eric
- Subjects
CRISPR screening ,Guide library ,Library cloning ,Primary cell CRISPR screening ,iPSC-derived CRISPR screening ,Humans ,CRISPR-Cas Systems ,RNA ,Guide ,CRISPR-Cas Systems ,Clustered Regularly Interspaced Short Palindromic Repeats ,Gene Library ,Gene Editing ,Cloning ,Molecular - Abstract
CRISPR genome editing approaches theoretically enable researchers to define the function of each human gene in specific cell types, but challenges remain to efficiently perform genetic perturbations in relevant models. In this work, we develop a library cloning protocol that increases sgRNA uniformity and greatly reduces bias in existing genome-wide libraries. We demonstrate that our libraries can achieve equivalent or better statistical power compared to previously reported screens using an order of magnitude fewer cells. This improved cloning protocol enables genome-scale CRISPR screens in technically challenging cell models and screen formats.
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- 2024
246. A study of pre- and post-treatment hematologic markers of immune response in patients undergoing radiotherapy for soft tissue sarcoma
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Ku, Eric, Harada, Garrett, Lee, Grace, Munjal, Akul, Peterson, Nicholas, Park, Jino, Chow, Warren, Stitzlein, Russell, Limoli, Charles, and Harris, Jeremy
- Subjects
Biomedical and Clinical Sciences ,Clinical Sciences ,Oncology and Carcinogenesis ,Precision Medicine ,Clinical Research ,Patient Safety ,Cancer ,Radiation Oncology ,sarcoma ,radiation ,NLR ,PLR ,dosimetry ,Clinical sciences ,Oncology and carcinogenesis - Abstract
IntroductionThis study investigates the impact of pre- and post-treatment hematologic markers, specifically neutrophil-to-lymphocyte ratio (NLR) and platelet-to-lymphocyte ratio (PLR), on treatment outcomes in soft tissue sarcoma (STS) patients undergoing radiation therapy (RT).MethodsData from 64 patients who underwent RT for curative management of STS were reviewed. Pre-RT and post-RT hematologic measures were evaluated for associations with survival outcomes. A normal tissue complication probability (NTCP) curve for predicting ΔPLR ≥ 75 was modeled using a probit function.ResultsElevated baseline NLR was associated with worse overall survival (OS) and disease-free survival (DFS), while elevated PLR was associated with worse DFS. Post-RT, elevated PLR was linked to worse OS and DFS. Increasing PLR change post-RT was associated with worse OS and DFS. Receiver operating characteristics analysis determined ΔPLR ≥ 75 to be a robust cutoff associated with worse DFS. Bone V10Gy ≥362 cc corresponded to a 50% risk of developing ΔPLR ≥ 75.DiscussionThese results suggest that hematologic markers could serve as prognostic biomarkers in both pre- and post-treatment settings for STS patients undergoing RT. Future studies can consider using bone V10Gy < 362 cc as a potential cutoff to reduce the risk of increased PLR after RT.
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- 2024
247. Differentiating Hemangioma and Secondary Angiosarcoma of the Breast: Two Case Reports
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Peshkar-Kulkarni, Saloni, Hoyt, Anne, and Chow, Lucy
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angiosarcoma ,breast cancer ,breast imaging ,hemangioma - Abstract
Angiosarcoma (AS) of the breast is a rare malignancy arising from the vascular endothelium. It can develop as a primary tumor or as a secondary tumor, the latter of which is most commonly associated with prior radiation therapy. AS may present in the breast as a palpable mass, unilateral diffuse breast enlargement, skin thickening, erythema, plaque-like violaceous discoloration, or painful nodules. The imaging features of AS vary across imaging modalities. Because AS of the breast is aggressive and prone to early metastasis, prompt detection is crucial to the improvement of generally low five-year survival rates. In this paper, we share one case of AS of the breast and one of a common mimic, hemangioma, with associated imaging and key clinical details that can aid radiologists in the timely identification and diagnosis of AS of the breast.
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- 2024
248. A genomic basis of vocal rhythm in birds
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Sebastianelli, Matteo, Lukhele, Sifiso M, Secomandi, Simona, de Souza, Stacey G, Haase, Bettina, Moysi, Michaella, Nikiforou, Christos, Hutfluss, Alexander, Mountcastle, Jacquelyn, Balacco, Jennifer, Pelan, Sarah, Chow, William, Fedrigo, Olivier, Downs, Colleen T, Monadjem, Ara, Dingemanse, Niels J, Jarvis, Erich D, Brelsford, Alan, vonHoldt, Bridgett M, and Kirschel, Alexander NG
- Subjects
Biological Sciences ,Ecology ,Evolutionary Biology ,Genetics ,Human Genome ,Animals ,Vocalization ,Animal ,Male ,Genomics ,Genome ,Female ,Songbirds ,Birds - Abstract
Vocal rhythm plays a fundamental role in sexual selection and species recognition in birds, but little is known of its genetic basis due to the confounding effect of vocal learning in model systems. Uncovering its genetic basis could facilitate identifying genes potentially important in speciation. Here we investigate the genomic underpinnings of rhythm in vocal non-learning Pogoniulus tinkerbirds using 135 individual whole genomes distributed across a southern African hybrid zone. We find rhythm speed is associated with two genes that are also known to affect human speech, Neurexin-1 and Coenzyme Q8A. Models leveraging ancestry reveal these candidate loci also impact rhythmic stability, a trait linked with motor performance which is an indicator of quality. Character displacement in rhythmic stability suggests possible reinforcement against hybridization, supported by evidence of asymmetric assortative mating in the species producing faster, more stable rhythms. Because rhythm is omnipresent in animal communication, candidate genes identified here may shape vocal rhythm across birds and other vertebrates.
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- 2024
249. The Urban Deployment Model: A Toolset for the Simulation and Performance Characterization of Radiation Detector Deployments in Urban Environments
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Abgrall, Nicolas, Ayyad, Yassid, Chow, Chun Ho, Cooper, Reynold, Hellfeld, Daniel, and Rofors, Emil
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Engineering ,Information and Computing Sciences ,Electrical Engineering ,Electronics ,Sensors and Digital Hardware ,Distributed Computing and Systems Software ,detector array ,network ,urban environment ,national security ,nuclear threat ,Analytical Chemistry ,Environmental Science and Management ,Ecology ,Distributed Computing ,Electrical and Electronic Engineering ,Electrical engineering ,Electronics ,sensors and digital hardware ,Environmental management ,Distributed computing and systems software - Abstract
Static and mobile radiation detectors can be deployed in urban environments for a range of nuclear security applications, including radiological source search-and-tracking scenarios. Modeling detector performance for such applications is challenging, as it does not depend solely on the detector capabilities themselves. Many factors must be taken into consideration, including specific source and background signatures, the topology and constraints of the deployment environment, the presence of nuisance sources, and whether detectors are mobile or static. When considering the simultaneous deployment of multiple, heterogeneous detectors, assessment of the system-wide performance requires the simulation of the individual detectors, and a system-level analysis of the detection performance. In radiological source search-and-tracking scenarios, performance is mostly dominated by the probability of encounter, which depends on the specifics of a given deployment, e.g., static vs. mobile detectors or a combination of both modalities, the number of detectors deployed, the dynamic vs. static setting of false alarm rates, and individual vs. networked operation. The Urban Deployment Model (UDM) toolset was specifically developed to cover the gap in the available generic frameworks for the simulation of radiation detector deployments at city scales. UDM provides a unified and modular framework to support the simulation and performance characterization of heterogeneous detector deployments in urban environments. This paper presents the key components along the UDM workflow.
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- 2024
250. Treatment Planning Strategies for Interstitial Ultrasound Ablation of Prostate Cancer.
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Gupta, Pragya, Heffter, Tamas, Zubair, Muhammad, Hsu, I-Chow, Burdette, E, and Diederich, Chris
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Bioacoustic-thermal models ,interstitial ultrasound ,prostate cancer ,thermal therapy ,treatment planning - Abstract
PURPOSE: To develop patient-specific 3D models using Finite-Difference Time-Domain (FDTD) simulations and pre-treatment planning tools for the selective thermal ablation of prostate cancer with interstitial ultrasound. This involves the integration with a FDA 510(k) cleared catheter-based ultrasound interstitial applicators and delivery system. METHODS: A 3D generalized prostate model was developed to generate temperature and thermal dose profiles for different applicator operating parameters and anticipated perfusion ranges. A priori planning, based upon these pre-calculated lethal thermal dose and iso-temperature clouds, was devised for iterative device selection and positioning. Full 3D patient-specific anatomic modeling of actual placement of single or multiple applicators to conformally ablate target regions can be applied, with optional integrated pilot-point temperature-based feedback control and urethral/rectum cooling. These numerical models were verified against previously reported ex-vivo experimental results obtained in soft tissues. RESULTS: For generic prostate tissue, 360 treatment schemes were simulated based on the number of transducers (1-4), applied power (8-20 W/cm2), heating time (5, 7.5, 10 min), and blood perfusion (0, 2.5, 5 kg/m3/s) using forward treatment modelling. Selectable ablation zones ranged from 0.8-3.0 cm and 0.8-5.3 cm in radial and axial directions, respectively. 3D patient-specific thermal treatment modeling for 12 Cases of T2/T3 prostate disease demonstrate applicability of workflow and technique for focal, quadrant and hemi-gland ablation. A temperature threshold (e.g., Tthres = 52 °C) at the treatment margin, emulating placement of invasive temperature sensing, can be applied for pilot-point feedback control to improve conformality of thermal ablation. Also, binary power control (e.g., Treg = 45 °C) can be applied which will regulate the applied power level to maintain the surrounding temperature to a safe limit or maximum threshold until the set heating time. CONCLUSIONS: Prostate-specific simulations of interstitial ultrasound applicators were used to generate a library of thermal-dose distributions to visually optimize and set applicator positioning and directivity during a priori treatment planning pre-procedure. Anatomic 3D forward treatment planning in patient-specific models, along with optional temperature-based feedback control, demonstrated single and multi-applicator implant strategies to effectively ablate focal disease while affording protection of normal tissues.
- Published
- 2024
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