201. Replication of Genome-Wide Association Studies of Type 2 Diabetes Susceptibility in Japan
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Yuichiro Yamada, Yoshitomo Oka, Yasuhiko Iwamoto, Yukio Horikawa, Kazuya Yamagata, Kazuaki Miyake, Yushi Hirota, Yutaka Seino, Hiroshi Maegawa, Jun Takeda, Yoshinori Hinokio, Naoko Iwasaki, Kazuki Yasuda, Ken Yamamoto, Masato Kasuga, Katsushi Tokunaga, Atsunori Kashiwagi, and Mayumi Enya
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medicine.medical_specialty ,Genotype ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Genome-wide association study ,Type 2 diabetes ,Polymorphism, Single Nucleotide ,Biochemistry ,Body Mass Index ,Endocrinology ,Japan ,CDKN2B ,Internal medicine ,Replication (statistics) ,Humans ,Medicine ,Genetic Predisposition to Disease ,Gene ,CDKAL1 ,Cyclin-Dependent Kinase Inhibitor p15 ,tRNA Methyltransferases ,business.industry ,Biochemistry (medical) ,Cyclin-Dependent Kinase 5 ,Odds ratio ,medicine.disease ,Confidence interval ,Insulin-Like Growth Factor Binding Protein 2 ,Diabetes Mellitus, Type 2 ,Insulin Resistance ,business - Abstract
Background: In Europeans and populations of European origin, several groups have recently identified novel type 2 diabetes susceptibility genes, including FTO, SLC30A8, HHEX, CDKAL1, CDKN2B, and IGF2BP2, none of which were in the list of functional candidates. Objective and Design: The aim of this study was to replicate in a Japanese population previously identified associations of single nucleotide polymorphisms (SNPs) within 10 candidate loci with type 2 diabetes using a relatively large sample size: 1921 subjects with type 2 diabetes and 1622 normal controls. Results: A total of 15 SNPs were genotyped. Eight SNPs in five loci were found to be associated with type 2 diabetes: rs3802177 [odds ratio (OR) = 1.16 (95% confidence interval (CI) 1.05–1.27); P = 4.5 × 10−3] in SLC30A8; rs1111875 [OR = 1.27 (95% CI 1.14–1.40); P = 1.4 × 10−5] and rs7923837 [OR = 1.27 (95% CI 1.13–1.43); P = 1.0 × 10−4] in HHEX; rs10811661 [OR = 1.27 (95% CI 1.15–1.40); P = 1.9 × 10−6] in CDKN2B; rs4402960 [OR = 1.23 (95% CI 1.11–1.36); P = 8.1 × 10−5] and rs1470579 [OR = 1.18 (95% CI 1.07–1.31); P = 8.3 × 10−4] in IGF2BP2; and rs7754840 [OR = 1.28 (95% CI 1.17–1.41); P = 4.5 × 10−7] and rs7756992 [OR = 1.27 (95% CI 1.15–1.40); P = 9.8 × 10−7] in CDKAL1. The first and second strongest associations were found at variants in CDKAL1 and CDKN2B, both of which are involved in the regenerative capacity of pancreatic β-cells. Conclusion: Some of these variants represent common type 2 diabetes-susceptibility genes in both Japanese and Europeans.
- Published
- 2008
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