455 results on '"Waldorp, Lourens"'
Search Results
202. The Sensory Consequences of Speaking: Parametric Neural Cancellation during Speech in Auditory Cortex
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Christoffels, Ingrid K., primary, van de Ven, Vincent, additional, Waldorp, Lourens J., additional, Formisano, Elia, additional, and Schiller, Niels O., additional
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- 2011
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203. arf3DS4: An Integrated Framework for Localization and Connectivity Analysis of fMRI Data
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Weeda, Wouter D., primary, Vos, Frank de, additional, Waldorp, Lourens J., additional, Grasman, Raoul P. P. P., additional, and Huizenga, Hilde M., additional
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- 2011
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204. Robust and Unbiased Variance of GLM Coefficients for Misspecified Autocorrelation and Hemodynamic Response Models in fMRI
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Waldorp, Lourens, primary
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- 2009
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205. Applied Asymptotics: Case Studies in Small Sample Statistics by Brazzale, A. R., Davison, A. C., and Reid, N.
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Waldorp, Lourens, primary
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- 2008
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206. Computing Assortative Mixing by Degree with the s-Metric in Networks Using Linear Programming.
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Waldorp, Lourens J. and Schmittmann, Verena D.
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MATHEMATICAL programming , *MATHEMATICAL optimization , *MATHEMATICAL transformations , *LINEAR programming , *LINEAR substitutions - Abstract
Calculation of assortative mixing by degree in networks indicates whether nodes with similar degree are connected to each other. In networks with scale-free distribution high values of assortative mixing by degree can be an indication of a hub-like core in networks. Degree correlation has generally been used to measure assortative mixing of a network. But it has been shown that degree correlation cannot always distinguish properly between different networks with nodes that have the same degrees. The so-called s-metric has been shown to be a better choice to calculate assortative mixing. The s-metric is normalized with respect to the class of networks without self-loops, multiple edges, and multiple components, while degree correlation is always normalized with respect to unrestricted networks, where self-loops, multiple edges, and multiple components are allowed. The challenge in computing the normalized s-metric is in obtaining the minimum and maximum value within a specific class of networks. We show that this can be solved by using linear programming. We use Lagrangian relaxation and the subgradient algorithm to obtain a solution to the s-metric problem. Several examples are given to illustrate the principles and some simulations indicate that the solutions are generally accurate. [ABSTRACT FROM AUTHOR]
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- 2015
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207. Editors’ introduction
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Wagenmakers, Eric-Jan, primary and Waldorp, Lourens, additional
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- 2006
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208. Estimating stationary dipoles from MEG/EEG data contaminated with spatially and temporally correlated background noise
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De Munck, Jan Casper, primary, Huizenga, Hilde, additional, Waldorp, Lourens, additional, and Heethaar, Rob, additional
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- 2001
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209. Connectionist Investigations of Individual Differences in Stroop Performance
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Phaf, R. Hans, primary, Christoffels, Ingrid K., additional, Waldorp, Lourens J., additional, and den Dulk, Paul, additional
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- 1998
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210. How Preparation Changes the Need for Top-Down Control of the Basal Ganglia When Inhibiting Premature Actions.
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Jahfari, Sara, Verbruggen, Frederick, Frank, Michael J., Waldorp, Lourens J., Colzato, Lorenza, Ridderinkhof, K. Richard, and Forstmann, Birte U.
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BASAL ganglia ,PREFRONTAL cortex ,MAGNETIC resonance imaging of the brain ,BIOLOGICAL neural networks ,MATHEMATICAL models ,CLINICAL trials - Abstract
Goal-oriented signals from the prefrontal cortex gate the selection of appropriate actions in the basal ganglia. Key nodes within this fronto-basal ganglia action regulation network are increasingly engaged when one anticipates the need to inhibit and override planned actions. Here, we ask how the advance preparation of action plans modulates the need for fronto-subcortical control when a planned action needs to be withdrawn. Functional magnetic resonance imaging data were collected while human participants performed a stop task with cues indicating the likelihood of a stop signal being sounded. Mathematical modeling of go trial responses suggested that participants attained a more cautious response strategy when the probability of a stop signal increased. Effective connectivity analysis indicated that, even in the absence of stop signals, the proactive engagement of the full control network is tailored to the likelihood of stop trial occurrence. Importantly, during actual stop trials, the strength of fronto-subcortical projections was stronger when stopping had to be engaged reactively compared with when it was proactively prepared in advance. These findings suggest that fronto-basal ganglia control is strongest in an unpredictable environment, where the prefrontal cortex plays an important role in the optimization of reactive control. Importantly, these results further indicate that the advance preparation of action plans reduces the need for reactive fronto-basal ganglia communication to gate voluntary actions. [ABSTRACT FROM AUTHOR]
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- 2012
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211. A Fast and Reliable Method for Simultaneous Waveform, Amplitude and Latency Estimation of Single-Trial EEG/ MEG Data.
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Weeda, Wouter D., Grasman, Raoul P. P. P., Waldorp, Lourens J., Van de Laar, Maria C., Van der Molen, Maurits W., and Huizenga, Hilde M.
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ELECTROENCEPHALOGRAPHY ,DIAGNOSIS of brain diseases ,ELECTRODIAGNOSIS ,ELECTROPHYSIOLOGY ,ESTIMATION theory - Abstract
The amplitude and latency of single-trial EEG/MEG signals may provide valuable information concerning human brain functioning. In this article we propose a new method to reliably estimate single-trial amplitude and latency of EEG/MEG signals. The advantages of the method are fourfold. First, no a-priori specified template function is required. Second, the method allows for multiple signals that may vary independently in amplitude and/or latency. Third, the method is less sensitive to noise as it models data with a parsimonious set of basis functions. Finally, the method is very fast since it is based on an iterative linear least squares algorithm. A simulation study shows that the method yields reliable estimates under different levels of latency variation and signal-to-noise ratioÕs. Furthermore, it shows that the existence of multiple signals can be correctly determined. An application to empirical data from a choice reaction time study indicates that the method describes these data accurately. [ABSTRACT FROM AUTHOR]
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- 2012
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212. Effective Connectivity Reveals Important Roles for Both the Hyperdirect (Fronto-Subthalamic) and the Indirect (Fronto-Striatal-Pallidal) Fronto-Basal Ganglia Pathways during Response Inhibition.
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Jahfari, Sara, Waldorp, Lourens, van den Wildenberg, Wery P. M., Scholte, H. Steven, Ridderinkhof, K. Richard, and Forstmann, Birte U.
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SENSORY ganglia , *MOTOR ability , *SENSE organs , *CAUDATE nucleus , *PREDICATE calculus , *MAGNETIC resonance imaging - Abstract
Fronto-basal ganglia pathways play a crucial role in voluntary action control, including the ability to inhibit motor responses. Response inhibition might be mediated via a fast hyperdirect pathway connecting the right inferior frontal gyrus (rIFG) and the presupplementary motor area (preSMA) with the subthalamic nucleus or, alternatively, via the indirect pathway between the cortex and caudate. To test the relative contribution of these two pathways to inhibitory action control, we applied an innovative quantification method for effective brain connectivity. Functional magnetic resonance imaging data were collected from 20 human participants performing a Simon interference task with an occasional stop signal. A single right-lateralized model involving both the hyperdirect and indirect pathways best explained the pattern of brain activation on stop trials. Notably, the overall connection strength of this combined model was highest on successfully inhibited trials. Inspection of the relationship between behavior and connection values revealed that fast inhibitors showed increased connectivity between rIFG and right caudate (rCaudate), whereas slow inhibitors were associated with increased connectivity between preSMA and rCaudate. In compliance, connection strengths from the rIFG and preSMA into the rCaudate were correlated negatively. If participants failed to stop, the magnitude of experienced interference (Simon effect), but not stopping latency, was predictive for the hyperdirect-indirect model connections. Together, the present results suggest that both the hyperdirect and indirect pathways act together to implement response inhibition, whereas the relationship between performance control and the fronto-basal ganglia connections points toward a top-down mechanism that underlies voluntary action control. [ABSTRACT FROM AUTHOR]
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- 2011
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213. The Wald Test and Cramér--Rao Bound for Misspecified Models in Electromagnetic Source Analysis.
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Waldorp, Lourens J., Huizenga, Hilde M., and Grasman, Raoul P. P. P.
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SIGNAL processing , *INFORMATION measurement , *ELECTROENCEPHALOGRAPHY , *MAGNETOENCEPHALOGRAPHY , *ELECTROMAGNETIC fields , *MATHEMATICAL models - Abstract
By using signal processing techniques, an estimate of activity in the brain from the electro- or magneto-encephalogram (EEG or MEG) can be obtained. For a proper analysis, a test is required to indicate whether the model for brain activity fits. A problem in using such tests is that often, not all assumptions are satisfied, like the assumption of the number of shells in an EEG. In such a case, a test on the number of sources (model order) might still be of interest. A detailed analysis is presented of the Wald test for these cases. One of the advantages of the Wald test is that it can be used when not all assumptions are satisfied. Two different, previously suggested, Wald tests in electromagnetic source analysis (EMSA) are examined: a test on source amplitudes and a test on the closeness of source pairs. The Wald test is analytically studied in terms of alternative hypotheses that are close to the null hypothesis (local alternatives). It is shown that the Wald test is asymptotically unbiased, that it has the correct level and power, which makes it appropriate to use in EMSA. An accurate estimate of the Cramér-Rao bound (CRB) is required for the use of the Wald test when not all assumptions are satisfied. The sandwich CRB is used for this purpose. It is defined for nonseparable least squares with constraints required for the Wald test on amplitudes. Simulations with EEG show that when the sensor positions are incorrect, or the number of shells is incorrect, or the conductivity parameter is incorrect, then the CRB and Wald test are still good, with a moderate number of trials. Additionally, the CRB and Wald test appear robust against an incorrect assumption on the noise covariance. A combination of incorrect sensor positions and noise covariance affects the possibility of detecting a source with small amplitude. [ABSTRACT FROM AUTHOR]
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- 2005
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214. Model Selection in Spatio-Temporal Electromagnetic Source Analysis.
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Waldorp, Lourens J., Huizenga, Hilde M., Nehorai, Arye, Grasman, Raoul P. P. P., and Molenaar, Peter C. M.
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ELECTROENCEPHALOGRAPHY , *DIAGNOSIS of brain diseases , *MAGNETOENCEPHALOGRAPHY , *ELECTROPHYSIOLOGY , *BRAIN magnetic fields measurement , *ELECTRODIAGNOSIS - Abstract
Several methods [model selection procedures (MS Ps)] to determine the number of sources in electroencephalogram (EEG) and magnetoencphalogram (MEG) data have previously been investigated in an instantaneous analysis. In this paper, these MSPs are extended to a spatio-temporal analysis if possible. It is seen that the residual variance (RV) tends to overestimate the number of sources. The Akaike information criterion (AIC) and the Wald test on amplitudes (WA) and the Wald test on locations (WL) have the highest probabilities of selecting the correct number of sources. The WA has the advantage that it offers the opportunity to test which source is active at which time sample. [ABSTRACT FROM AUTHOR]
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- 2005
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215. Frequency Domain Simultaneous Source and Source Coherence Estimation With an Application to MEG.
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Grasman, Raoul P. P. P., Huizenga, Hilde M., Waldorp, Lourens J., Böcker, Koen B. E., and Molenaar, Peter C. M.
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BRAIN ,CEREBRAL cortex ,ANALYSIS of covariance ,MAGNETOENCEPHALOGRAPHY ,ELECTROENCEPHALOGRAPHY ,MAGNETIC resonance imaging ,POSITRON emission tomography - Abstract
Interactions between cortical areas are crucial for cognitive functioning. Methods currently in use to assess such interactions are not well suited for this task because they lack timing precision, localization precision, or both. We present a method for simultaneous estimation of source location and orientation parameters and cross-spectral parameters to overcome these problems. Different estimators are evaluated for their performance. From a simulation study, we conclude that the estimators derived from the maximum-likelihood procedure have good statistical properties with moderate sample sizes, whereas those obtained from the generalized least squares procedure are biased and give poor-quality standard errors. The method is illustrated with visually evoked field data, with inconclusive results. [ABSTRACT FROM AUTHOR]
- Published
- 2004
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216. Estimating Stationary Dipoles From MEG/EEG Data Contaminated With Spatially and Temporally Correlated Background Noise.
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de Munck, Jan Casper, Huizenga, Hilde M., Waldorp, Lourens J., and Heethaar, Rob M.
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MAGNETIC dipoles ,MAGNETOENCEPHALOGRAPHY ,ELECTROENCEPHALOGRAPHY - Abstract
Presents a study which estimated the stationary dipole model for the inverse problem of magnetoencepholographic and electroencepholographic data contaminated with spatially and temporally correlated background noise. Method of the study; Results and discussion; Concusion.
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- 2002
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217. Tailored interventions into broad attitude networks towards the COVID-19 pandemic.
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Chambon, Monique, Dalege, Jonas, Waldorp, Lourens J., Van der Maas, Han L. J., Borsboom, Denny, and van Harreveld, Frenk
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ATTITUDES toward illness , *COVID-19 pandemic - Abstract
This study examines how broad attitude networks are affected by tailored interventions aimed at variables selected based on their connectiveness with other variables. We first computed a broad attitude network based on a large-scale cross-sectional COVID-19 survey (N = 6,093). Over a period of approximately 10 weeks, participants were invited five times to complete this survey, with the third and fifth wave including interventions aimed at manipulating specific variables in the broad COVID-19 attitude network. Results suggest that targeted interventions that yield relatively strong effects on variables central to a broad attitude network have downstream effects on connected variables, which can be partially explained by the variables the interventions were aimed at. We conclude that broad attitude network structures can reveal important relations between variables that can help to design new interventions. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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218. Basic skills in a complex task: A graphical model relating memory and lexical retrieval to simultaneous interpreting<fnr rid="fn1"><fn id="fn1">The authors like to thank Maya Misra, René Zeelenberg, Jeroen Raaijmakers and the reviewers of this manuscript for their helpful comments. We also thank Gerda Boven and Will Wintjes of the Faculteit Tolk-Vertaler, Hogeschool Maastricht, and Marisa Stoffers for rating SI performance. I. K. Christoffels and L. J. Waldorp were supported by grants (575-21-011 and 575-25-013) from the Netherlands Organization for Scientific Research (NWO) foundation for Behavioral and Educational Sciences. Portions of this research were presented at the 3rd International Symposium on Bilingualism in Bristol, UK, April 2001.</fn>
- Author
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CHRISTOFFELS, INGRID K., GROOT, ANNETTE M. B. DE, and WALDORP, LOURENS J.
- Abstract
Simultaneous interpreting (SI) is a complex skill, where language comprehension and production take place at the same time in two different languages. In this study we identified some of the basic cognitive skills involved in SI, focusing on the roles of memory and lexical retrieval. We administered a reading span task in two languages and a verbal digit span task in the native language to assess memory capacity, and a picture naming and a word translation task to tap the retrieval time of lexical items in two languages, and we related performance on these four tasks to interpreting skill in untrained bilinguals. The results showed that word translation and picture naming latencies correlate with interpreting performance. Also digit span and reading span were associated with SI performance, only less strongly so. A graphical models analysis indicated that specifically word translation efficiency and working memory form independent subskills of SI performance in untrained bilinguals.
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- 2003
219. Fast and accurate modelling of longitudinal and repeated measures neuroimaging data
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Guillaume, Bryan, Hua, Xue, Thompson, Paul M., Waldorp, Lourens, Nichols, Thomas E., and Psychologische Methodenleer (Psychologie, FMG)
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Neurology ,Cognitive Neuroscience ,ADNI ,Sandwich Estimator ,Marginal Modelling ,Longitudinal Modelling ,QA ,QP - Abstract
Despite the growing importance of longitudinal data in neuroimaging, the standard analysis methods make restrictive or unrealistic assumptions (e.g., assumption of Compound Symmetry—the state of all equal variances and equal correlations—or spatially homogeneous longitudinal correlations). While some new methods have been proposed to more accurately account for such data, these methods are based on iterative algorithms that are slow and failure-prone. In this article, we propose the use of the Sandwich Estimator method which first estimates the parameters of interest with a simple Ordinary Least Square model and second estimates variances/covariances with the “so-called” Sandwich Estimator (SwE) which accounts for the within-subject correlation existing in longitudinal data. Here, we introduce the SwE method in its classic form, and we review and propose several adjustments to improve its behaviour, specifically in small samples. We use intensive Monte Carlo simulations to compare all considered adjustments and isolate the best combination for neuroimaging data. We also compare the SwE method to other popular methods and demonstrate its strengths and weaknesses. Finally, we analyse a highly unbalanced longitudinal dataset from the Alzheimer's Disease Neuroimaging Initiative and demonstrate the flexibility of the SwE method to fit within- and between-subject effects in a single model. Software implementing this SwE method has been made freely available at http://warwick.ac.uk/tenichols/SwE.
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220. Hippocampus plays a role in speech feedback processing.
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van de Ven, Vincent, Waldorp, Lourens, and Christoffels, Ingrid
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HIPPOCAMPUS (Brain) , *AUDITORY masking , *CINGULATE cortex , *AUDITORY cortex , *SEMANTIC memory , *MASKING (Psychology) - Abstract
• We combined data of two fMRI studies of speech feedback processing using noise masking to investigate the role of hippocampus in monitoring of self-produced speech. • We found decreased hippocampal activity during auditory feedback of self-produced speech was noise-masked, compared to unmasked speech feedback. • Auditory-hippocampal functional coupling decreased during noisemasked speech feedback, compared to unmasked feedback. • Hippocampus showed stronger coupling to auditory-SMA connectivity during speech production but not during listening to pre-recorded speech. • We suggest that the hippocampus contributes to speech monitoring in accordance with a "prediction" view of hippocampal function. There is increasing evidence that the hippocampus is involved in language production and verbal communication, although little is known about its possible role. According to one view, hippocampus contributes semantic memory to spoken language. Alternatively, hippocampus is involved in the processing the (mis)match between expected sensory consequences of speaking and the perceived speech feedback. In the current study, we re-analysed functional magnetic resonance (fMRI) data of two overt picture-naming studies to test whether hippocampus is involved in speech production and, if so, whether the results can distinguish between a "pure memory" versus a "prediction" account of hippocampal involvement. In both studies, participants overtly named pictures during scanning while hearing their own speech feedback unimpededly or impaired by a superimposed noise mask. Results showed decreased hippocampal activity when speech feedback was impaired, compared to when feedback was unimpeded. Further, we found increased functional coupling between auditory cortex and hippocampus during unimpeded speech feedback, compared to impaired feedback. Finally, we found significant functional coupling between a hippocampal/supplementary motor area (SMA) interaction term and auditory cortex, anterior cingulate cortex and cerebellum during overt picture naming, but not during listening to one's own pre-recorded voice. These findings indicate that hippocampus plays a role in speech production that is in accordance with a "prediction" view of hippocampal functioning. [ABSTRACT FROM AUTHOR]
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- 2020
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221. Mean field dynamics of stochastic cellular automata for random and small-world graphs.
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Waldorp, Lourens and Kossakowski, Jolanda
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PROBABILISTIC automata , *RANDOM graphs , *CELLULAR automata , *SYSTEMS theory , *MARKOV random fields , *RANDOM fields , *STOCHASTIC analysis , *BIFURCATION diagrams - Abstract
We aim to provide a theoretical framework to explain the discrete transitions of mood connecting ideas from network theory and dynamical systems theory. It was recently shown how networks (graphs) can be used to represent psychopathologies, where symptoms of, say, depression, affect each other and certain configurations determine whether someone could transition into a depression. To analyse changes over time and characterise possible future behaviour is in general rather difficult for large graphs. We describe the dynamics of graphs using one-dimensional discrete time dynamical systems theory obtained from a mean field approximation to stochastic cellular automata (SCA). Often the mean field approximation is used on a regular graph (a grid or torus) where each node has the same number of edges and the same probability of becoming active. We provide quantitative results on the accuracy of using the mean field approximation for the grid and random and small-world graph to describe the dynamics of the SCA. Bifurcation diagrams for the mean field of the different graphs indicate possible phase transitions for certain parameter settings of the mean field. Simulations confirm for different graph sizes (number of nodes) that the mean field approximation is accurate. • Mean field framework to analyse complex and dynamic graphs. • Extensions of the mean field to random and small-world graphs. • High accuracy of the mean field approximation to stochastic process. • Mean parameter of majority function determines stability or bistability. • Possibility to use this framework to explain psychopathology. [ABSTRACT FROM AUTHOR]
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- 2020
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222. Book Review of the Handbook of Graphical Models.
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Waldorp, Lourens
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CAUSAL inference ,CAUSAL models ,ISING model ,UNDIRECTED graphs ,EXPERT systems - Abstract
For instance, introducing notation is just about done in each chapter but is necessary because the notation is not consistent across all chapters. Some overlap between the chapters is present in discussing nodewise selection and the glasso, but the chapters do clearly have a different focus. The handbook covers five central topics in graphical modeling: (1) foundations of graphical models, (2) computational aspects, (3) inference, (4) causal inference, and (5) applications. [Extracted from the article]
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- 2022
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223. Short-term sequences of aggressive behavior in psychiatric inpatients with psychotic disorders using Markov models.
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Derks, Joël L., Vermeulen, Jentien M., Boyette, Lindy-Lou, Waldorp, Lourens J., and de Haan, Lieuwe
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PSYCHOTHERAPY patients , *RISK assessment , *CONCEPTUAL models , *ACADEMIC medical centers , *HOSPITAL admission & discharge , *RETROSPECTIVE studies , *DESCRIPTIVE statistics , *AGGRESSION (Psychology) , *PSYCHOLOGY , *MEDICAL records , *ACQUISITION of data , *PSYCHOSES , *PSYCHIATRIC hospitals , *PSYCHOSOCIAL factors - Abstract
Aggression in inpatients with psychotic disorders is harmful to patients and health care professionals. The current study introduces a novel approach for assessing short-term sequences of different types of aggression. Occurrence and type of aggressive behavior was assessed retrospectively by reviewing hospital charts in a sample of 120 inpatients with psychotic disorders, admitted to the psychiatric wards of an academic hospital using the Modified Overt Aggression Scale (MOAS). Behavioral sequences of verbal aggression, physical aggression against objects, physical aggression against oneself and physical aggression against others were analyzed by using Markov models, a statistical technique providing the probabilities of transferring from one state to another. The Markov models showed that when patients behave aggressively, they are likely to either show the same type of aggression or to be non-aggressive consecutively. Patients are, however, unlikely to subsequently show another type of aggression. Non-aggressive behavior is very unlikely to result in physical aggression or aggression against objects. The current study introduced a novel approach on how to investigate aggressive behavior in patients with psychotic disorders. Replication of our results in a bigger sample is needed to reliably develop a day-to-day risk assessment tool for aggressive behavior. [ABSTRACT FROM AUTHOR]
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- 2024
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224. A network analysis of female sexual function: comparing symptom networks in women with decreased, increased, and stable sexual desire.
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Gunst, Annika, Werner, Marlene, Waldorp, Lourens J., Laan, Ellen T. M., Källström, Marianne, and Jern, Patrick
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Problems related to low sexual desire in women are common clinical complaints, and the aetiology is poorly understood. We investigated predictors of change in levels of sexual desire using a novel network approach, which assumes that mental disorders arise from direct interactions between symptoms. Using population-based data from 1,449 Finnish women, we compared between-subject networks of women whose sexual desire decreased, increased, or remained stable over time. Networks were estimated and analyzed at T1 (2006) and replicated at T2 (2013) using R. Domains included were, among others, sexual functions, sexual distress, anxiety, depression, body dissatisfaction, and relationship status. Overall, networks were fairly similar across groups. Sexual arousal, satisfaction, and relationship status were the most central variables, implying that they might play prominent roles in female sexual function; sexual distress mediated between general distress and sexual function; and sexual desire and arousal showed different patterns of relationships, suggesting that they represent unique sexual function aspects. Potential group-differences suggested that sex-related pain and body dissatisfaction might play roles in precipitating decreases of sexual desire. The general network structure and similarities between groups replicated well; however, the potential group-differences did not replicate. Our study sets the stage for future clinical and longitudinal network modelling of female sexual function. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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225. Formalizing psychological interventions through network control theory.
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Stocker, Julia Elina, Koppe, Georgia, Reich, Hanna, Heshmati, Saeideh, Kittel-Schneider, Sarah, Hofmann, Stefan G., Hahn, Tim, van der Maas, Han L. J., Waldorp, Lourens, and Jamalabadi, Hamidreza
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PSYCHOTHERAPY , *MODEL theory , *CONTROLLABILITY in systems engineering , *SENSITIVITY & specificity (Statistics) , *CONTROL theory (Engineering) - Abstract
Despite the growing deployment of network representation to comprehend psychological phenomena, the question of whether and how networks can effectively describe the effects of psychological interventions remains elusive. Network control theory, the engineering study of networked interventions, has recently emerged as a viable methodology to characterize and guide interventions. However, there is a scarcity of empirical studies testing the extent to which it can be useful within a psychological context. In this paper, we investigate a representative psychological intervention experiment, use network control theory to model the intervention and predict its effect. Using this data, we showed that: (1) the observed psychological effect, in terms of sensitivity and specificity, relates to the regional network control theoretic metrics (average and modal controllability), (2) the size of change following intervention negatively correlates with a whole-network topology that quantifies the "ease" of change as described by control theory (control energy), and (3) responses after intervention can be predicted based on formal results from control theory. These insights assert that network control theory has significant potential as a tool for investigating psychological interventions. Drawing on this specific example and the overarching framework of network control theory, we further elaborate on the conceptualization of psychological interventions, methodological considerations, and future directions in this burgeoning field. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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226. What features of psychopathy might be central? A network analysis of the Psychopathy Checklist-Revised (PCL-R) in three large samples.
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Verschuere, Bruno, van Ghesel Grothe, Sophia, Waldorp, Lourens, Watts, Ashley L., Lilienfeld, Scott O., Edens, John F., Skeem, Jennifer L., and Noordhof, Arjen
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Despite a wealth of research, the core features of psychopathy remain hotly debated. Using network analysis, an innovative and increasingly popular statistical tool, the authors mapped the network structure of psychopathy, as operationalized by the Psychopathy Checklist-Revised (PCL-R; Hare, 2003) in two large U.S. offender samples (nNIMH = 1559; nWisconsin = 3954), and 1 large Dutch forensic psychiatric sample (nTBS = 1937). Centrality indices were highly stable within each sample, and indicated that callousness/lack of empathy was the most central PCL-R item in the 2 U.S. samples, which aligns with classic clinical descriptions and prototypicality studies of psychopathy. The similarities across the U.S. samples offer some support regarding generalizability, but there were also striking differences between the U.S. samples and the Dutch sample, wherein the latter callousnesss/lack of empathy was also fairly central but irresponsibility and parasitic lifestyle were even more central. The findings raise the important possibility that network-structures do not only reflect the structure of the constructs under study, but also the sample from which the data derive. The results further raise the possibility of cross-cultural differences in the phenotypic structure of psychopathy, PCL-R measurement variance, or both. Network analyses may help elucidate the core characteristics of psychopathological constructs, including psychopathy, as well as provide a new tool for assessing measurement invariance across cultures. (PsycINFO Database Record [ABSTRACT FROM AUTHOR]
- Published
- 2018
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227. How compliance with behavioural measures during the initial phase of a pandemic develops over time: A longitudinal COVID‐19 study.
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Chambon, Monique, Dalege, Jonas, Borsboom, Denny, Waldorp, Lourens J., van der Maas, Han L. J., and van Harreveld, Frenk
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TIME , *BEHAVIOR therapy , *DESCRIPTIVE statistics , *RESEARCH funding , *PATIENT compliance , *COVID-19 pandemic , *LONGITUDINAL method - Abstract
In this longitudinal research, we adopt a complexity approach to examine the temporal dynamics of variables related to compliance with behavioural measures during the COVID‐19 pandemic. Dutch participants (N = 2399) completed surveys with COVID‐19‐related variables five times over a period of 10 weeks (23 April–30 June 2020). With these data, we estimated within‐person COVID‐19 attitude networks containing a broad set of psychological variables and their relations. These networks display variables' predictive effects over time between measurements and contemporaneous effects during measurements. Results show (1) bidirectional effects between multiple variables relevant for compliance, forming potential feedback loops, and (2) a positive reinforcing structure between compliance, support for behavioural measures, involvement in the pandemic and vaccination intention. These results can explain why levels of these variables decreased throughout the course of the study. The reinforcing structure points towards potentially amplifying effects of interventions on these variables and might inform processes of polarization. We conclude that adopting a complexity approach might contribute to understanding protective behaviour in the initial phase of pandemics by combining different theoretical models and modelling bidirectional effects between variables. Future research could build upon this research by studying causality with interventions and including additional variables in the networks. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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228. Deconstructing the construct: A network perspective on psychological phenomena
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Schmittmann, Verena D., Cramer, Angélique O.J., Waldorp, Lourens J., Epskamp, Sacha, Kievit, Rogier A., and Borsboom, Denny
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PSYCHOLOGICAL tests , *LATENT variables , *MENTAL depression , *SLEEP disorders , *SYMPTOMS , *PSYCHOLOGICAL research - Abstract
Abstract: In psychological measurement, two interpretations of measurement systems have been developed: the reflective interpretation, in which the measured attribute is conceptualized as the common cause of the observables, and the formative interpretation, in which the measured attribute is seen as the common effect of the observables. We advocate a third interpretation, in which attributes are conceptualized as systems of causally coupled (observable) variables. In such a view, a construct like ’depression’ is not seen as a latent variable that underlies symptoms like ’lack of sleep’ or ’fatigue’, and neither as a composite constructed out of these symptoms, but as a system of causal relations between the symptoms themselves (e.g., lack of sleep → fatigue, etc.). We discuss methodological strategies to investigate such systems as well as theoretical consequences that bear on the question in which sense such a construct could be interpreted as real. [Copyright &y& Elsevier]
- Published
- 2013
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229. Borderline personality disorder classification based on brain network measures during emotion regulation.
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Cremers, Henk, van Zutphen, Linda, Duken, Sascha, Domes, Gregor, Sprenger, Andreas, Waldorp, Lourens, and Arntz, Arnoud
- Subjects
- *
EMOTION regulation , *SUPPORT vector machines , *PERSONALITY disorders , *DIALECTICAL behavior therapy , *PREFRONTAL cortex , *BORDERLINE personality disorder , *EMOTIONS - Abstract
Borderline Personality Disorder (BPD) is characterized by an increased emotional sensitivity and dysfunctional capacity to regulate emotions. While amygdala and prefrontal cortex interactions are regarded as the critical neural mechanisms underlying these problems, the empirical evidence hereof is inconsistent. In the current study, we aimed to systematically test different properties of brain connectivity and evaluate the predictive power to detect borderline personality disorder. Patients with borderline personality disorder (n = 51), cluster C personality disorder (n = 26) and non-patient controls (n = 44), performed an fMRI emotion regulation task. Brain network analyses focused on two properties of task-related connectivity: phasic refers to task-event dependent changes in connectivity, while tonic was defined as task-stable background connectivity. Three different network measures were estimated (strength, local efficiency, and participation coefficient) and entered as separate models in a nested cross-validated linear support vector machine classification analysis. Borderline personality disorder vs. non-patient controls classification showed a balanced accuracy of 55%, which was not significant under a permutation null-model, p = 0.23. Exploratory analyses did indicate that the tonic strength model was the highest performing model (balanced accuracy 62%), and the amygdala was one of the most important features. Despite being one of the largest data-sets in the field of BPD fMRI research, the sample size may have been limited for this type of classification analysis. The results and analytic procedures do provide starting points for future research, focusing on network measures of tonic connectivity, and potentially focusing on subgroups of BPD. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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- View/download PDF
230. Invisible Hands and Fine Calipers: A Call to Use Formal Theory as a Toolkit for Theory Construction.
- Author
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Robinaugh, Donald J., Haslbeck, Jonas M. B., Ryan, Oisín, Fried, Eiko I., and Waldorp, Lourens J.
- Subjects
- *
PSYCHOLOGY , *THEORY , *INTELLECT , *INTERPROFESSIONAL relations - Abstract
In recent years, a growing chorus of researchers has argued that psychological theory is in a state of crisis: Theories are rarely developed in a way that indicates an accumulation of knowledge. Paul Meehl raised this very concern more than 40 years ago. Yet in the ensuing decades, little has improved. We aim to chart a better path forward for psychological theory by revisiting Meehl's criticisms, his proposed solution, and the reasons his solution failed to meaningfully change the status of psychological theory. We argue that Meehl identified serious shortcomings in our evaluation of psychological theories and that his proposed solution would substantially strengthen theory testing. However, we also argue that Meehl failed to provide researchers with the tools necessary to construct the kinds of rigorous theories his approach required. To advance psychological theory, we must equip researchers with tools that allow them to better generate, evaluate, and develop their theories. We argue that formal theories provide this much-needed set of tools, equipping researchers with tools for thinking, evaluating explanation, enhancing measurement, informing theory development, and promoting the collaborative construction of psychological theories. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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231. Are individual differences quantitative or qualitative? An integrated behavioral and fMRI MIMIC approach.
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Zadelaar, Jacqueline N., Weeda, Wouter D., Waldorp, Lourens J., Van Duijvenvoorde, Anna C.K., Blankenstein, Neeltje E., and Huizenga, Hilde M.
- Subjects
- *
INDIVIDUAL differences , *COGNITIVE neuroscience , *EXPECTED returns , *RISK aversion , *DECISION making - Abstract
In cognitive neuroscience there is a growing interest in individual differences. We propose the Multiple Indicators Multiple Causes (MIMIC) model of combined behavioral and fMRI data to determine whether such differences are quantitative or qualitative in nature. A simulation study revealed the MIMIC model to have adequate power for this goal, and parameter recovery to be satisfactory. The MIMIC model was illustrated with a re-analysis of Van Duijvenvoorde et al. (2016) and Blankenstein et al. (2018) decision making data. This showed individual differences in Van Duijvenvoorde et al. (2016) to originate in qualitative differences in decision strategies. Parameters indicated some individuals to use an expected value decision strategy, while others used a loss minimizing strategy, distinguished by individual differences in vmPFC activity. Individual differences in Blankenstein et al. (2018) were explained by quantitative differences in risk aversion. Parameters showed that more risk averse individuals preferred safe over risky choices, as predicted by heightened vmPFC activity. We advocate using the MIMIC model to empirically determine, rather than assume, the nature of individual differences in combined behavioral and fMRI datasets. • In cognitive (neuro-)science there is a growing interest in individual differences. • A key question is whether individual differences are quantitative or qualitative. • In response, we propose MIMIC model selection for combined fMRI and behavioral data. • Simulations show under which circumstances the approach works adequately. • Empirical applications on two decision making datasets illustrate approach merits. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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232. False alarm? A comprehensive reanalysis of "Evidence that psychopathology symptom networks have limited replicability" by Forbes, Wright, Markon, and Krueger (2017).
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Borsboom, Denny, Fried, Eiko I., Epskamp, Sacha, Waldorp, Lourens J., van Borkulo, Claudia D., van der Maas, Han L. J., and Cramer, Angélique O. J.
- Subjects
- *
ANTISOCIAL personality disorders , *MENTAL depression , *MATHEMATICAL models of psychology , *RESEARCH funding , *STATISTICS , *DATA analysis , *ANXIETY disorders , *PSYCHOLOGICAL factors ,RESEARCH evaluation - Abstract
Forbes, Wright, Markon, and Krueger (2017) stated that "psychopathology networks have limited replicability" (p. 1011) and that "popular network analysis methods produce unreliable results" (p. 1011). These conclusions are based on an assessment of the replicability of four different network models for symptoms of major depression and generalized anxiety across two samples; in addition, Forbes et al. analyzed the stability of the network models within the samples using split-halves. Our reanalysis of the same data with the same methods led to results directly opposed to theirs: All network models replicated very well across the two data sets and across the split-halves. We trace the differences between Forbes et al.'s results and our own to the fact that they did not appear to accurately implement all network models and used debatable metrics to assess replicability. In particular, they deviated from existing estimation routines for relative importance networks, did not acknowledge the fact that the skip structure used in the interviews strongly distorted correlations between symptoms, and incorrectly assumed that network structures and metrics should be the same not only across the different samples but also across the different network models used. In addition to a comprehensive reanalysis of the data, we end with a discussion of best practices concerning future research into the replicability of psychometric networks. (PsycINFO Database Record [ABSTRACT FROM AUTHOR]
- Published
- 2017
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233. Hidden multiplicity in exploratory multiway ANOVA: Prevalence and remedies.
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Cramer, Angélique, Ravenzwaaij, Don, Matzke, Dora, Steingroever, Helen, Wetzels, Ruud, Grasman, Raoul, Waldorp, Lourens, and Wagenmakers, Eric-Jan
- Subjects
- *
ANALYSIS of variance , *PSYCHOLOGICAL research , *BEHAVIORAL research , *STATISTICAL correlation , *REGRESSION analysis - Abstract
Many psychologists do not realize that exploratory use of the popular multiway analysis of variance harbors a multiple-comparison problem. In the case of two factors, three separate null hypotheses are subject to test (i.e., two main effects and one interaction). Consequently, the probability of at least one Type I error (if all null hypotheses are true) is 14 % rather than 5 %, if the three tests are independent. We explain the multiple-comparison problem and demonstrate that researchers almost never correct for it. To mitigate the problem, we describe four remedies: the omnibus F test, control of the familywise error rate, control of the false discovery rate, and preregistration of the hypotheses. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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234. State of the aRt personality research: A tutorial on network analysis of personality data in R.
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Costantini, Giulio, Epskamp, Sacha, Borsboom, Denny, Perugini, Marco, Mõttus, René, Waldorp, Lourens J., and Cramer, Angélique O.J.
- Subjects
- *
PERSONALITY , *PSYCHOMETRICS , *CENTRALITY , *PSYCHOLOGICAL research , *CLUSTER analysis (Statistics) - Abstract
Network analysis represents a novel theoretical approach to personality. Network approaches motivate alternative ways of analyzing data, and suggest new ways of modeling and simulating personality processes. In the present paper, we provide an overview of network analysis strategies as they apply to personality data. We discuss different ways to construct networks from typical personality data, show how to compute and interpret important measures of centrality and clustering, and illustrate how one can simulate on networks to mimic personality processes. All analyses are illustrated using a data set on the commonly used HEXACO questionnaire using elementary R-code that readers may easily adapt to apply to their own data. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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235. Investigating latent decision constructs using computational modeling of behavioral and brain data
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Zadelaar, J.N., Huizenga, Hilde, Waldorp, Lourens, Weeda, Wouter, and Ontwikkelingspsychologie (Psychologie, FMG)
- Abstract
The current dissertation is aimed at the study of a variety of latent decision-making constructs, that is, constructs reasoned to underlie variability in decision-making behavior but which cannot be directly observed (e.g., decision strategies). This is achieved via computational modeling, the use of mathematical models to describe, understand, and test hypotheses concerning complex phenomena. The models applied in these studies take into account, or focusses specifically on, individual differences in decision making in either behavioral or combined behavioral and neuroimaging data. The dissertation consists of five separate research articles, split into two parts. Part I focusses on the MIMIC model approach, a structural equation model allowing to empirically test whether individual differences in decision making are quantitative (i.e., or qualitative (i.e., categorical) in nature. In chapter 2, the method is introduced, tested, and illustrated in combined behavioral and neuroimaging data. In chapter 3, the method is applied to demographic and behavioral data of a gambling machine task. Part II focusses on the study of individual differences in decision strategies, qualitatively distinct latent mechanisms that describe how available information is used to reach decisions. Chapter 4 involved the study of individual differences and age effects in decision strategies in perceptual decision making including advice from others. In chapter 5, we investigate if individuals with ADHD utilize less complex decision strategies due to a reduced need for cognition. In chapter 6, we test if individual differences in the framing effect relate to differences in decision strategy and brain activity.
- Published
- 2021
236. Fast and accurate modelling of longitudinal and repeated measures neuroimaging data.
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Guillaume, Bryan, Hua, Xue, Thompson, Paul M., Waldorp, Lourens, and Nichols, Thomas E.
- Subjects
- *
BRAIN imaging , *BRAIN physiology , *ITERATIVE methods (Mathematics) , *ALZHEIMER'S disease , *LONGITUDINAL method - Abstract
Abstract: Despite the growing importance of longitudinal data in neuroimaging, the standard analysis methods make restrictive or unrealistic assumptions (e.g., assumption of Compound Symmetry—the state of all equal variances and equal correlations—or spatially homogeneous longitudinal correlations). While some new methods have been proposed to more accurately account for such data, these methods are based on iterative algorithms that are slow and failure-prone. In this article, we propose the use of the Sandwich Estimator method which first estimates the parameters of interest with a simple Ordinary Least Square model and second estimates variances/covariances with the “so-called” Sandwich Estimator (SwE) which accounts for the within-subject correlation existing in longitudinal data. Here, we introduce the SwE method in its classic form, and we review and propose several adjustments to improve its behaviour, specifically in small samples. We use intensive Monte Carlo simulations to compare all considered adjustments and isolate the best combination for neuroimaging data. We also compare the SwE method to other popular methods and demonstrate its strengths and weaknesses. Finally, we analyse a highly unbalanced longitudinal dataset from the Alzheimer's Disease Neuroimaging Initiative and demonstrate the flexibility of the SwE method to fit within- and between-subject effects in a single model. Software implementing this SwE method has been made freely available at http://warwick.ac.uk/tenichols/SwE. [Copyright &y& Elsevier]
- Published
- 2014
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237. Under pressure: Studying complex and causal systems in psychopathology
- Author
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Kossakowski, J.J., van der Maas, Han, Waldorp, Lourens, and Psychologische Methodenleer (Psychologie, FMG)
- Abstract
In this dissertation, I focused on two questions, (1) can we, and if so how, assess to what extent a complex dynamical system is in such a state that it can transition between two stable states, and (2) how well are we able to estimate a causal graph when we combine observational and experimental data. Chapter 2 provided an overview on various techniques that can be used to estimate network structures. Two models, the Cramer model and the Empirical Mean Field Approximation, were described and illustrated using empirical data. In chapter 3, we theoretically showed that it is possible to reduce a multidimensional dynamical system to a single equation, which in turn may be used to estimate a system’s dynamical properties. In other words, the mean field model that is introduced here can be used to infer whether or not a system is in a space where two stable states exist, or in a space where only one stable state exists. chapter 4 expanded on this work and combined the mean field model with maximum likelihood estimation to estimate the parameter of interest in the mean field model. With this parameter, we could then assess the expectancy of an individual to transition between two stable states. The second part of this dissertation focused on causality. Chapter 5 studied different algorithms to estimate causal graphs. Here, we argued that using observational data alone will not give the entire causal picture. By combining observational data with experimental data, it is possible to detect meaningful causal relations that would otherwise stay undetected. Not only did we show the advantage of the combination of observational and experimental data in a simulation study, chapter 6 showed that this approach also results in interesting and meaningful causal relations when empirical data are used.
- Published
- 2020
238. Modeling psychopathology: From data models to formal theories
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Haslbeck, J.M.B., Waldorp, Lourens, Borsboom, Denny, and Psychologische Methodenleer (Psychologie, FMG)
- Abstract
This dissertation deals with the problem of modeling psychopathology. Its first part focuses on statistical (data) models and introduces a number of models for cross-sectional and time series data that can be visualized as a network. This includes Mixed Graphical Models (MGMs), which allow one to include variables of different types in a statistical network model, Moderated Network Models (MNMs) which allow pairwise interactions to be moderated by other variables in the model, and time-varying Vector Autoregressive (VAR) models and MGMs that relax the standard assumption of stationarity. In addition, I discuss several methodological issues related to statistical network models such as the importance of considering predictability, model selection between AR and VAR models, and how the interpretation of the Ising model depends on its domain. The second part focuses on formal theories of psychopathology and how to develop them using data models. I first illustrate the fundamental difficulties in obtaining a formal theory with a purely statistical approach, by trying to recover an assumed bistable system for emotion dynamics with currently popular time series analyses. Next, I present a formal theory of panic disorder, based on an extensive review of the literature on the phenomenology of panic disorder and existing theories. Finally, I discuss three different ways to use data models to construct formal theories about psychopathological phenomena. Based on this discussion, I put forward an abductive framework for constructing formal theories for psychological and psychopathological phenomena.
- Published
- 2020
239. Symptom network models in depression research: From methodological exploration to clinical application
- Author
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van Borkulo, Claudia Debora, Schoevers, Robert, Borsboom, Denny, and Waldorp, Lourens J.
- Abstract
Volgens de netwerkbenadering van psychopathologie kunnen mentale stoornissen worden gezien als een netwerk van symptomen die elkaar causaal beïnvloeden. Met de netwerkbenadering kunnen we hypotheses formuleren met betrekking tot belangrijke vragen binnen de psychopathologie en behandeling. In haar proefschrift stelt Claudia van Borkulo de volgende vragen centraal: “Hoe komt het dat bij sommige patiënten een depressie weer overgaat, maar bij sommigen niet?” en “Waarom ontwikkelen sommigen mensen een depressie en anderen niet?” Ze heeft deze vragen bekeken vanuit de netwerkbenadering. Om dat te kunnen doen, heeft ze eerst de benodigde methodologie ontwikkeld: eLasso (geïmplementeerd in R-package IsingFit) om de netwerkstructuur aan de hand van binaire data af te leiden en de Network Comparison Test (NCT; geïmplementeerd in R-package NetworkComparisonTest) om netwerken te kunnen vergelijken. In verschillende validatiestudies laat ze zien dat eLasso een computationeel efficiënte methode is die het goed doet onder veel voorkomende omstandigheden binnen de psychologie en psychiatrie. Ook de NCT is in diverse omstandigheden in staat om verschillen te detecteren. Vervolgens heeft ze de methoden toegepast op empirische data waaruit bleek dat de dichtheid van een symptoom netwerk van patiënten geassocieerd is met het beloop van depressie. Andersom bleek ook dat centraliteit van depressiesymptomen bij gezonde mensen een voorspellende waarde hebben voor het ontwikkelen van depressie. Hoewel deze resultaten op groepsniveau gelden – en het dus onduidelijk is wat dit betekent voor het individu – bieden de resultaten in dit proefschrift interessante aanknopingspunten voor vervolgonderzoek.
- Published
- 2018
240. Network psychometrics
- Author
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Epskamp, S., Borsboom, Denny, Waldorp, Lourens, Psychologische Methodenleer (Psychologie, FMG), and FMG
- Abstract
In recent years, research on dynamical systems in psychology has emerged, which is analogous to other fields such as biology and physics. One popular and promising line of research involves the modeling of psychological systems as causal systems or networks of cellular automat. The general hypothesis is that noticeable macroscopic behavior—the co-occurrence of aspects of psychology such as cognitive abilities, psychopathological symptoms, or behavior—is not due to the influence of unobserved common causes, such as general intelligence, psychopathological disorders, or personality traits, but rather to emergent behavior in a network of interacting psychological, sociological, biological, and other components. This dissertation concerns the estimation of such psychological networks from datasets. While this line of research originated from a dynamical systems perspective, the developed methods have shown strong utility as exploratory data analysis tools, highlighting unique variance between variables rather than shared variance across variables (e.g., factor analysis). In addition, this dissertation shows that network modeling and latent variable modeling are closely related and can complement one-another. The methods are thus widely applicable in diverse fields of psychological research. To this end, the dissertation is split in three parts. Part I is aimed at empirical researchers with an emphasis on clinical psychology, and introduces the methods in conceptual terms and tutorials. Part II is aimed at psychometricians and methodologists, and discusses the methods in technical terms. Finally, Part III is aimed at R users with an emphasis on personality research.
- Published
- 2017
241. Turtles all the way down? Psychometric approaches to the reduction problem
- Author
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Kievit, R.A., Borsboom, Denny, van der Maas, Han, Waldorp, Lourens, and Psychologische Methodenleer (Psychologie, FMG)
- Abstract
The question of how different explanatory levels in scientific inquiry are related to each other is known as the reduction problem. This thesis focuses on a specific domain of this question, namely how we should relate brains to (psychological) behaviour. The central position of this thesis is that this question is ultimately a measurement problem. That is, in order to understand the relationship between brains and minds, we need to formulate measurement models that can relate observable variables (e.g. response times, brain activity, brain structure) to the underlying constructs we are interested in (e.g. memory capacity, intelligence or personality differences). Moreover, in the case of relating brains to behaviour, theories from philosophy of mind can be translated into such measurement models, thereby guiding empirical inquiry and simultaneously providing an empirical test of philosophical theories. Further extensions of these ideas focus on the application of representational geometry, whereby the structure of neural and behavioural patterns are used to relate brain and behaviour, and the examination of cases where inferences across explanatory levels goes awry (known as Simpson’s Paradox). Based on empirical applications in several domains it is concluded that supervenience theory, which suggests a fundamentally asymmetrical relationship between brain and mind, is most in line both with theoretical considerations and empirical data.
- Published
- 2014
242. New methods for the analysis of trial-to-trial variability in neuroimaging studies
- Author
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Weeda, W.D., van der Molen, Maurits, Huizenga, Hilde, Waldorp, Lourens, Grasman, Raoul, ASCoR (FMG), and Ontwikkelingspsychologie (Psychologie, FMG)
- Published
- 2012
243. Perturbation graphs, invariant causal prediction and causal relations in psychology.
- Author
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Waldorp L, Kossakowski J, and van der Maas HLJ
- Abstract
Networks (graphs) in psychology are often restricted to settings without interventions. Here we consider a framework borrowed from biology that involves multiple interventions from different contexts (observations and experiments) in a single analysis. The method is called perturbation graphs. In gene regulatory networks, the induced change in one gene is measured on all other genes in the analysis, thereby assessing possible causal relations. This is repeated for each gene in the analysis. A perturbation graph leads to the correct set of causes (not nec-essarily direct causes). Subsequent pruning of paths in the graph (called transitive reduction) should reveal direct causes. We show that transitive reduction will not in general lead to the correct underlying graph. We also show that invariant causal prediction is a generalisation of the perturbation graph method and does reveal direct causes, thereby replacing transitive re-duction. We conclude that perturbation graphs provide a promising new tool for experimental designs in psychology, and combined with invariant causal prediction make it possible to re-veal direct causes instead of causal paths. As an illustration we apply these ideas to a data set about attitudes on meat consumption and to a time series of a patient diagnosed with major depression disorder., (© 2024 The Author(s). British Journal of Mathematical and Statistical Psychology published by John Wiley & Sons Ltd on behalf of British Psychological Society.)
- Published
- 2024
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- View/download PDF
244. Network Inference With the Lasso.
- Author
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Waldorp L and Haslbeck J
- Subjects
- Humans, Data Interpretation, Statistical, Uncertainty, Confidence Intervals, Models, Statistical, Computer Simulation statistics & numerical data
- Abstract
Calculating confidence intervals and p -values of edges in networks is useful to decide their presence or absence and it is a natural way to quantify uncertainty. Since lasso estimation is often used to obtain edges in a network, and the underlying distribution of lasso estimates is discontinuous and has probability one at zero when the estimate is zero, obtaining p -values and confidence intervals is problematic. It is also not always desirable to use the lasso to select the edges because there are assumptions required for correct identification of network edges that may not be warranted for the data at hand. Here, we review three methods that either use a modified lasso estimate (desparsified or debiased lasso) or a method that uses the lasso for selection and then determines p -values without the lasso. We compare these three methods with popular methods to estimate Gaussian Graphical Models in simulations and conclude that the desparsified lasso and its bootstrapped version appear to be the best choices for selection and quantifying uncertainty with confidence intervals and p -values.
- Published
- 2024
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- View/download PDF
245. Life meaning and feelings of ineffectiveness as transdiagnostic factors in eating disorder and comorbid internalizing symptomatology - A combined undirected and causal network approach.
- Author
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Schutzeichel F, Waldorp LJ, Aan Het Rot M, Glashouwer KA, Frey MI, Wiers RW, and de Jong PJ
- Subjects
- Humans, Emotions, Comorbidity, Anxiety Disorders epidemiology, Anxiety epidemiology, Feeding and Eating Disorders epidemiology
- Abstract
The field of eating disorders is facing problems ranging from a suboptimal classification system to low long-term success rates of treatments. There is evidence supporting a transdiagnostic approach to explain the development and maintenance of eating disorders. Meaning in life has been proposed as a promising key transdiagnostic factor that could potentially not only bridge between the different eating disorder subtypes but also explain frequent co-occurrence with symptoms of comorbid psychopathology, such as anxiety and depression. The present study used self-report data from 501 participants to construct networks of eating disorder and comorbid internalizing symptomatology, including factors related to meaning in life, i.e., presence of life meaning, perceived ineffectiveness, and satisfaction with basic psychological needs. In an undirected network model, it was found that ineffectiveness is a central node, also bridging between eating disorder and other psychological symptoms. A directed network model displayed evidence for a causal effect of presence of life meaning both on the core symptomatology of eating disorders and depressive symptoms via ineffectiveness. These results support the notion of meaning in life and feelings of ineffectiveness as transdiagnostic factors within eating disorder symptomatology in the general population., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023 The Authors. Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
246. Comparing network structures on three aspects: A permutation test.
- Author
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van Borkulo CD, van Bork R, Boschloo L, Kossakowski JJ, Tio P, Schoevers RA, Borsboom D, and Waldorp LJ
- Subjects
- Male, Female, Humans, Cross-Sectional Studies, Psychometrics, Models, Statistical
- Abstract
Network approaches to psychometric constructs, in which constructs are modeled in terms of interactions between their constituent factors, have rapidly gained popularity in psychology. Applications of such network approaches to various psychological constructs have recently moved from a descriptive stance, in which the goal is to estimate the network structure that pertains to a construct, to a more comparative stance, in which the goal is to compare network structures across populations. However, the statistical tools to do so are lacking. In this article, we present the network comparison test (NCT), which uses resampling-based permutation testing to compare network structures from two independent, cross-sectional data sets on invariance of (a) network structure, (b) edge (connection) strength, and (c) global strength. Performance of NCT is evaluated in simulations that show NCT to perform well in various circumstances for all three tests: The Type I error rate is close to the nominal significance level, and power proves sufficiently high if sample size and difference between networks are substantial. We illustrate NCT by comparing depression symptom networks of males and females. Possible extensions of NCT are discussed. (PsycInfo Database Record (c) 2024 APA, all rights reserved).
- Published
- 2023
- Full Text
- View/download PDF
247. Towards an encompassing theory of network models: Reply to Brusco, Steinley, Hoffman, Davis-Stober, and Wasserman (2019).
- Author
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Marsman M, Waldorp L, and Borsboom D
- Subjects
- Humans, Algorithms
- Abstract
Network models like the Ising model are increasingly used in psychological research. In a recent article published in this journal, Brusco et al. (2019) provide a critical assessment of the conditions that underlie the Ising model and the eLasso method that is commonly used to estimate it. In this commentary, we show that their main criticisms are unfounded. First, where Brusco et al. (2019) suggest that Ising models have little to do with classical network models such as random graphs, we show that they can be fruitfully connected. Second, if one makes this connection it is immediately evident that Brusco et al.'s (2019) second criticism-that the Ising model requires complete population homogeneity and does not allow for individual differences in network structure-is incorrect. In particular, we establish that if every individual has their own topology, and these individual differences instantiate a random graph model, the Ising model will hold in the population. Hence, population homogeneity is sufficient for the Ising model, but it is not necessary, as Brusco et al. (2019) suggest. Third, we address Brusco et al.'s (2019) criticism regarding the sparsity assumption that is made in common uses of the Ising model. We show that this criticism is misdirected, as it targets a particular estimation algorithm for the Ising model rather than the model itself. We also describe various established and validated approaches for estimating the Ising model for networks that violate the sparsity assumption. Finally, we outline important avenues for future research. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
- Published
- 2023
- Full Text
- View/download PDF
248. The impact of ordinal scales on Gaussian mixture recovery.
- Author
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Haslbeck JMB, Vermunt JK, and Waldorp LJ
- Subjects
- Humans, Bayes Theorem, Normal Distribution, Algorithms
- Abstract
Gaussian mixture models (GMMs) are a popular and versatile tool for exploring heterogeneity in multivariate continuous data. Arguably the most popular way to estimate GMMs is via the expectation-maximization (EM) algorithm combined with model selection using the Bayesian information criterion (BIC). If the GMM is correctly specified, this estimation procedure has been demonstrated to have high recovery performance. However, in many situations, the data are not continuous but ordinal, for example when assessing symptom severity in medical data or modeling the responses in a survey. For such situations, it is unknown how well the EM algorithm and the BIC perform in GMM recovery. In the present paper, we investigate this question by simulating data from various GMMs, thresholding them in ordinal categories and evaluating recovery performance. We show that the number of components can be estimated reliably if the number of ordinal categories and the number of variables is high enough. However, the estimates of the parameters of the component models are biased independent of sample size. Finally, we discuss alternative modeling approaches which might be adopted for the situations in which estimating a GMM is not acceptable., (© 2022. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
249. Modeling psychopathology: From data models to formal theories.
- Author
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Haslbeck JMB, Ryan O, Robinaugh DJ, Waldorp LJ, and Borsboom D
- Subjects
- Humans, Psychopathology, Language, Philosophy, Empirical Research, Mental Disorders psychology
- Abstract
Over the past decade, there has been a surge of empirical research investigating mental disorders as complex systems. In this article, we investigate how to best make use of this growing body of empirical research and move the field toward its fundamental aims of explaining, predicting, and controlling psychopathology. We first review the contemporary philosophy of science literature on scientific theories and argue that fully achieving the aims of explanation, prediction, and control requires that we construct formal theories of mental disorders: theories expressed in the language of mathematics or a computational programming language. We then investigate three routes by which one can use empirical findings (i.e., data models) to construct formal theories: (a) using data models themselves as formal theories, (b) using data models to infer formal theories, and (c) comparing empirical data models to theory-implied data models in order to evaluate and refine an existing formal theory. We argue that the third approach is the most promising path forward. We conclude by introducing the abductive formal theory construction (AFTC) framework, informed by both our review of philosophy of science and our methodological investigation. We argue that this approach provides a clear and promising way forward for using empirical research to inform the generation, development, and testing of formal theories both in the domain of psychopathology and in the broader field of psychological science. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
- Published
- 2022
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250. Relations between Networks, Regression, Partial Correlation, and the Latent Variable Model.
- Author
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Waldorp L and Marsman M
- Subjects
- Normal Distribution, Models, Statistical
- Abstract
The Gaussian graphical model (GGM) has become a popular tool for analyzing networks of psychological variables. In a recent article in this journal, Forbes, Wright, Markon, and Krueger (FWMK) voiced the concern that GGMs that are estimated from partial correlations wrongfully remove the variance that is shared by its constituents. If true, this concern has grave consequences for the application of GGMs. Indeed, if partial correlations only capture the unique covariances, then the data that come from a unidimensional latent variable model ULVM should be associated with an empty network (no edges), as there are no unique covariances in a ULVM. We know that this cannot be true, which suggests that FWMK are missing something with their claim. We introduce a connection between the ULVM and the GGM and use that connection to prove that we find a fully-connected and not an empty network associated with a ULVM. We then use the relation between GGMs and linear regression to show that the partial correlation indeed does not remove the common variance.
- Published
- 2022
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