223 results on '"Samuel A Shelburne"'
Search Results
202. EEG alpha activity influenced by visual input and not by eye position
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Henry R. Bragdon, Robert M. Chapman, and Samuel A. Shelburne
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Adult ,Male ,medicine.medical_specialty ,genetic structures ,Adolescent ,Eye Movements ,Light ,Alpha (ethology) ,Electroencephalography ,Form perception ,Ophthalmology ,Parietal Lobe ,medicine ,Humans ,Mathematics ,Communication ,Analysis of Variance ,medicine.diagnostic_test ,business.industry ,General Neuroscience ,Eye movement ,Electrooculography ,Darkness ,eye diseases ,Form Perception ,Fixation (visual) ,Female ,sense organs ,Neurology (clinical) ,Occipital Lobe ,business ,Occipital lobe ,Accommodation - Abstract
Recent investigations have suggested that elevation of the eyes is associated with a marked increase in EEG alpha activity. Our experiments showed that vertical eye elevation had no direct influence on alpha activity. In Preliminary and Main Groups of thirteen and twenty-two subjects, an EEG electronic scorer was used to measure the amount of time that alpha activity was present from the left and right hemispheres in the following comparisons: (a) eye positions ahead vs. up in the light, (b) eyes ahead vs. up in the dark and (c) eyes open vs. closed in the light. In the Main Group, fixation targets for the eye-ahead and eye-up positions and electro-oculogram records of eye position were added. In the dark, where differential visual input was eliminated, the alpha index did not increase when the eyes were elevated. Differences in alpha activity related to eye position in the light condition were decreased when differential visual input was decreased by the use of fixation targets. The effects of variables confounded with eye position, e.g. patterned visual input to the retina, accomodation, fixation, and effort required to maintain a specified eye position, are discussed. In these experiments, the main variable that determined i increase in alpha activity was reduction in visual input, either by closing the eyes or extinguishing t the lights.
- Published
- 1970
203. THE SPINAL FLUID IN HYPERTENSION 12
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Samuel A. Shelburne, Daniel Blain, and James P. O'Hare
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business.industry ,Medicine ,General Medicine ,Articles ,Bioinformatics ,business - Published
- 1932
204. Visual evoked responses to word and nonsense syllable stimuli
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Samuel A Shelburne
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Consonant ,medicine.medical_specialty ,Visual perception ,genetic structures ,media_common.quotation_subject ,Nonsense ,Electroencephalography ,Audiology ,Stimulus (physiology) ,Functional Laterality ,Dyslexia ,medicine ,Humans ,Dominance, Cerebral ,Evoked Potentials ,Vision, Ocular ,media_common ,Communication ,medicine.diagnostic_test ,business.industry ,Computers ,Verbal Behavior ,General Neuroscience ,Brain ,Visual evoked responses ,Nonsense syllable ,Neurology (clinical) ,Psychology ,business - Abstract
Word and nonsense visual stimuli were presented to eight normal adult subjects. The words were consonant-vowel-consonant trigrams, such as CAT, and each letter was presented separately in sequence. The nonsense syllables were paired for the first two positions: only the third position consonant was changed. The subject's task was to decide whether or not the stimuli formed a word and to make a motor answer response. Cortical evoked responses were recorded from the vertex, left parietal and right parietal areas. Responses from each letter in the sequence were analyzed separately, both to the words and to the nonsense syllables. No consistent differences were noted between VERs to word stimuli and VERs to nonsense syllables. The amplitude of responses to third position stimuli was significantly greater than of those to first position stimuli in all subjects. These differences were maximal at 450–550 msec following stimulus presentation and were most prominent at the vertex electrode. The increased positive amplitudes of the late components of the visual evoked response were related to the subject's decision making process. In separate experiments the task-relevant meaningful stimulus was switched to first position consonants and then the increased amplitude occurred after the first response. No consistent differences were found between responses from the left and right hemispheres. The application of these techniques to the study of various types of reading disabilities was briefly discussed.
- Published
- 1972
205. Characterization of oral and gut microbiome temporal variability in hospitalized cancer patients
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Naval Daver, Samuel A. Shelburne, Joseph F. Petrosino, Elizabeth J. Shpall, Bryan Fellman, W. Duncan Wadsworth, Daniel P. Smith, Nadim J. Ajami, Pranoti Sahasrabhojane, Michele Guindani, Dimitrios P. Kontoyiannis, and Jessica Galloway-Peña
- Subjects
Male ,0301 basic medicine ,medicine.medical_specialty ,Antineoplastic Agents ,Gut flora ,Feces ,03 medical and health sciences ,0302 clinical medicine ,Antibiotics ,RNA, Ribosomal, 16S ,Internal medicine ,medicine ,Genetics ,Humans ,Chemotherapy ,Genetics(clinical) ,Microbiome ,Saliva ,Molecular Biology ,Genetics (clinical) ,Aged ,Leukemia ,Bacteria ,biology ,Research ,Gastrointestinal Microbiome ,Temporal variability ,Cancer ,Induction chemotherapy ,Sequence Analysis, DNA ,Middle Aged ,biology.organism_classification ,medicine.disease ,Anti-Bacterial Agents ,3. Good health ,Leukemia, Myeloid, Acute ,UniFrac ,030104 developmental biology ,030220 oncology & carcinogenesis ,Cohort ,Immunology ,Molecular Medicine ,Female - Abstract
Background Understanding longitudinal variability of the microbiome in ill patients is critical to moving microbiome-based measurements and therapeutics into clinical practice. However, the vast majority of data regarding microbiome stability are derived from healthy subjects. Herein, we sought to determine intra-patient temporal microbiota variability, the factors driving such variability, and its clinical impact in an extensive longitudinal cohort of hospitalized cancer patients during chemotherapy. Methods The stool (n = 365) and oral (n = 483) samples of 59 patients with acute myeloid leukemia (AML) undergoing induction chemotherapy (IC) were sampled from initiation of chemotherapy until neutrophil recovery. Microbiome characterization was performed via analysis of 16S rRNA gene sequencing. Temporal variability was determined using coefficients of variation (CV) of the Shannon diversity index (SDI) and unweighted and weighted UniFrac distances per patient, per site. Measurements of intra-patient temporal variability and patient stability categories were analyzed for their correlations with genera abundances. Groups of patients were analyzed to determine if patients with adverse outcomes had significantly different levels of microbiome temporal variability. Potential clinical drivers of microbiome temporal instability were determined using multivariable regression analyses. Results Our cohort evidenced a high degree of intra-patient temporal instability of stool and oral microbial diversity based on SDI CV. We identified statistically significant differences in the relative abundance of multiple taxa amongst individuals with different levels of microbiota temporal stability. Increased intra-patient temporal variability of the oral SDI was correlated with increased risk of infection during IC (P = 0.02), and higher stool SDI CVs were correlated with increased risk of infection 90 days post-IC (P = 0.04). Total days on antibiotics was significantly associated with increased temporal variability of both oral microbial diversity (P = 0.03) and community structure (P = 0.002). Conclusions These data quantify the longitudinal variability of the oral and gut microbiota in AML patients, show that increased variability was correlated with adverse clinical outcomes, and offer the possibility of using stabilizing taxa as a method of focused microbiome repletion. Furthermore, these results support the importance of longitudinal microbiome sampling and analyses, rather than one time measurements, in research and future clinical practice. Electronic supplementary material The online version of this article (doi:10.1186/s13073-017-0409-1) contains supplementary material, which is available to authorized users.
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206. Normal and abnormal development of the human nervous system
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Samuel A. Shelburne
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Nervous system ,medicine.anatomical_structure ,General Neuroscience ,Philosophy ,medicine ,Leech ,Neurology (clinical) ,Anatomy - Published
- 1976
207. The second conference on the clinical delineation of birth defects. Part VI. Nervous system. D. Bergsma, ed. Williams and Wilkins, Baltimore. 1971. 255 pp
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Samuel A. Shelburne
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Nervous system ,Gerontology ,Embryology ,medicine.anatomical_structure ,business.industry ,Health, Toxicology and Mutagenesis ,Medicine ,Anatomy ,Toxicology ,business ,Developmental Biology - Published
- 1974
208. RETINAL ARTERIOVENOUS NICKING
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J. Leeper Hawley, Samuel A. Shelburne, and A. S. McGEE
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medicine.medical_specialty ,business.industry ,Retinal ,medicine.disease ,Retinal arteriovenous nicking ,Surgery ,chemistry.chemical_compound ,Blood pressure ,Atheroma ,chemistry ,Ambulatory ,medicine ,Reflex ,In patient ,Arteriovenous nicking ,medicine.symptom ,business - Abstract
When you cannot measure, your knowledge is meager and not satisfactory. —Lord Kelvin. There are a number of changes visible in the retinal arteries and veins of patients with early or late hypertension. The most frequent are narrowing of the arteries (spasm), changes in caliber (so-called spasm or atheroma), tortuosity, mottling of the arterial reflex, "silver wire" arteries and arteriovenous nicking. We have chosen the last of these lesions for study because (1) arteriovenous nicking is easily and accurately identified after one has sufficient practice, (2) it is the most constant change present in all forms of long-standing hypertension and (3) it never occurs except in patients who have or have had hypertension. Wagener has stated that "spasm" never occurs except in hypertensive patients. Our experience has confirmed this repeatedly, but the phenomenon is largely confined to patients with exceedingly high diastolic pressure (so-called malignant hypertension) and consequently is not
- Published
- 1942
209. PARATYPHOD–ENTERITIDIS MENINGITIS. Report of an Additional Case Due to Bacillus Enteritidis
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Frank B. Lynch and Samuel A. Shelburne
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business.industry ,Bacillus enteritidis ,medicine ,General Medicine ,medicine.disease ,business ,Meningitis ,Microbiology - Published
- 1930
210. RETINAL ARTERIOVENOUS NICKING
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Samuel A. Shelburne
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medicine.medical_specialty ,business.industry ,Blood Pressure ,Retinal ,Retina ,Retinal arteriovenous nicking ,Surgery ,Lesion ,chemistry.chemical_compound ,Long term learning ,Retinal Diseases ,chemistry ,Internal medicine ,Hypertension ,Ambulatory ,medicine ,Cardiology ,Humans ,Disease ,Longitudinal Studies ,medicine.symptom ,Arteriovenous nicking ,business - Abstract
THE FIRST paper of this series was a report in 1942 of the relation of retinal arteriovenous nicking to the size of the heart in ambulatory hypertensive patients.1The studies which were reported on at that time began in the late 1930's, and within the past two years my colleagues and I have had the opportunity to reexamine some of these earlier patients. During the earlier studies we made careful notes on the appearance of each lesion, in particular those of retinal arteries, so that we were able in this reexamination a decade later to note the changes in the lesion that had taken place over the years. The present report deals with the results of such examinations. In our first paper we saw a need for careful evaluation of the various degrees of arteriovenous nicking. Prior to this time, we could find no report that the lesion varied in
- Published
- 1949
211. TUMORS OF THE HEART. II. REPORT OF A SECONDARY TUMOR OF THE HEART INVOLVING THE PERICARDIUM AND THE BUNDLE OF HIS WITH REMISSION FOLLOWING DEEP ROENTGEN-RAY THERAPY
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Howard S. Aronson and Samuel A. Shelburne
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medicine.medical_specialty ,business.industry ,Roentgen ,General Medicine ,Roentgen rays ,medicine.disease ,Primary tumor ,Bundle of His ,Surgery ,symbols.namesake ,medicine.anatomical_structure ,Pericardial sac ,Internal Medicine ,symbols ,Medicine ,Pericardium ,business - Abstract
Excerpt The first paper of this series1included a description of the first reported case of a primary tumor of the heart recognized before death in a patient in whom there was no previous knowledge...
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- 1940
212. Clinics in Developmental Medicine No. 38: The Neurological Examination of the Child With Minor Nervous Dysfunction
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Samuel A. Shelburne
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Neurological signs ,Pediatrics ,medicine.medical_specialty ,Scoring system ,medicine.diagnostic_test ,business.industry ,Neurological exam ,Neurological examination ,Minor (academic) ,Standardized technique ,Pediatrics, Perinatology and Child Health ,medicine ,Neurological dysfunction ,business - Abstract
Many of the previous volumes in the series Clinics in Developmental Medicine have concentrated on selected aspects of the neurological examination in children, such as Nos. 21/22, Neurological Examination of Children, by Paine and Oppee, and No. 1, The Neurological Examination of the Infant, by Andre-Thomas et al. The present volume, No. 38, deals with examination techniques in eliciting minor neurological signs, primarily motor abnormalities in children ages 3 through 10. The authors propose a standardized technique for making a quantitative evaluation of the neurological examination. The tests are ones commonly used by most pediatric neurologists, but the authors have developed a scoring system, 0-2, 0-3, etc, for recording deviations from normal patterns. It is analogous to the physchological tests of Reitan, where elements of the neurological exam are given a numerical score and incorporated into the total evaluation. The whole area of minor neurological dysfunction, often called "soft signs,"
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- 1971
213. Some Inherited Disorders of Brain and Muscle: Proceedings of the Fifth Symposium of the Society for the Study of Inborn Errors of Metabolism
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Samuel A. Shelburne
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Pathology ,medicine.medical_specialty ,business.industry ,Globoid leukodystrophy ,education ,Disease ,medicine.disease ,humanities ,Metachromatic leukodystrophy ,Newcastle upon tyne ,Sphingolipidoses ,Pediatrics, Perinatology and Child Health ,Medicine ,business ,Neuroscience - Abstract
This book is the result of the Proceedings of the Fifth Symposium of the Society for the Study of Inborn Errors of Metabolism held at Newcastle upon Tyne, England in 1967. The book consists of 14 papers on the genetics, biochemistry, and pathology of muscle diseases and central nervous system degenerative diseases. In general, the emphasis is on the review of recent developments in these fields, rather than the authors' presentation of their original material. The overall level of the symposium is very good. The chapters by D. N. Raine and H. Jatzkewitz on recent advances in the biochemistry of the sphingolipidoses are outstanding. Their discussion of the nomenclature and classification of the ganglioside diseases (Tay-Sachs) in terms of their biochemical abnormalities is very useful. Diagrams and explanations showing the biochemical interrelationships of such entities as the amaurotic idiocies, Krabbe's globoid leukodystrophy, metachromatic leukodystrophy, Fabry's disease, and Gaucher's disease
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- 1970
214. Neurology of Early Childhood
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Samuel A. Shelburne
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Pediatrics ,medicine.medical_specialty ,Neurology ,business.industry ,General Medicine ,Disease ,Learning disability ,medicine ,Pediatric Neurology ,Early childhood ,medicine.symptom ,business ,Motor skill ,Neuroradiology - Abstract
This is the second edition of Dr. Dekaban's book, which first appeared in 1959. The text has a standard format with sections on various neurological diseases, most of which are well described. The author's primary aim is to cover the period from birth to 6 years of age. The influence of mental and motor development on the manifestations of neurological disease in children is emphasized throughout. Many recent advances have not been incorporated in this revised edition. For example, there have been remarkable developments in pediatric neuroradiology, particularly in cerebral and spinal cord angiography. In this book's illustrations, there are 17 x-ray films of the skull and 17 air studies, but no arteriograms and only one myelogram. There is also the glaring omission of the problems of hyperactivity, and of learning disabilities, subjects of increasing importance in pediatric neurology. Some sections on therapy are grossly inadequate, particularly in the field
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- 1971
215. PRIMARY TUMORS OF THE HEART
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Samuel A. Shelburne
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Heart neoplasms ,Pediatrics ,medicine.medical_specialty ,Primary tumors of the heart ,business.industry ,Logical conjunction ,Internal Medicine ,medicine ,General Medicine ,medicine.disease ,business - Published
- 1935
216. AN UNUSUAL CASE OF CARDIOSPASM
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Samuel A. Shelburne
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medicine.medical_specialty ,medicine.anatomical_structure ,Unusual case ,business.industry ,medicine ,Cardiospasm ,General Medicine ,Pleural cavity ,medicine.symptom ,Esophagus ,business ,Dysphagia ,Surgery - Abstract
This case is reported principally because the esophagus was so dilated that it led to a clinical and roentgen diagnosis of fluid in the pleural cavity, and an aspiration of the esophageal fluid was made through the chest wall. This interesting clinical mistake has not heretofore been reported, as far as I have been able to determine from the literature. The case is interesting also because of the slight degree of dysphagia. This, of course, was a factor in forming the error in diagnosis. L. W., a Negro, aged 35, admitted to Baylor Hospital out-patient department, April 19, 1932, stated that he had been working as a chauffeur and had been in fair health until February 26. On that day, as he was riding on a street car, he felt a sudden pain in the pit of his stomach and he "broke out in a cold sweat." He got off
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- 1934
217. Mental Retardation: An Atlas of Diseases With Associated Physical Abnormalities
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Samuel A. Shelburne
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Pediatrics ,medicine.medical_specialty ,Neurocutaneous Syndromes ,business.industry ,education ,medicine ,General Medicine ,General hospital ,business ,humanities ,Case material - Abstract
This new book on mental retardation emphasizes physical abnormalities associated with various diseases and syndromes. The case material was primarily derived from the Walter E. Fernald State School, Waverly, Mass, and the authors are associated with this institution, the Massachusetts General Hospital, and the Harvard Medical School.The clinical conditions are divided into seven different aspects: metabolic and endocrine diseases, progressive diseases of unknown cause, acquired conditions associated with mental retardation, chromosomal abnormalities, central nervous system malformations, syndromes of multiple deformities, and neurocutaneous syndromes with mental retardation. The illustrations are on the right pages and the text and references are on the left pages.The format is similar to that of two other excellent books, Recognizable Patterns of Human Malformation by D.W. Smith and Atlas of Mental Retardation Syndromes by S.S. Gellis and M. Feingold. The present book is more extensive than the other two publications and in many ways
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- 1972
218. EXPERIMENTAL EDEMA
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SAMUEL A. SHELBURNE
- Subjects
Internal Medicine - Published
- 1931
219. Identification of distinct impacts of CovS inactivation on the transcriptome of acapsular group A streptococci
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Sruti DebRoy, William C. Shropshire, Luis Vega, Chau Tran, Nicola Horstmann, Piyali Mukherjee, Selvalakshmi Selvaraj-Anand, Truc T. Tran, Jordan Bremer, Marc Gohel, Cesar A. Arias, Anthony R. Flores, and Samuel A. Shelburne
- Subjects
Streptococcus ,CovRS ,acapsular ,Microbiology ,QR1-502 - Abstract
ABSTRACT Group A streptococcal (GAS) strains causing severe, invasive infections often have mutations in the control of virulence two-component regulatory system (CovRS) which represses capsule production, and high-level capsule production is considered critical to the GAS hypervirulent phenotype. Additionally, based on studies in emm1 GAS, hyperencapsulation is thought to limit transmission of CovRS-mutated strains by reducing GAS adherence to mucosal surfaces. It has recently been identified that about 30% of invasive GAS strains lacks capsule, but there are limited data regarding the impact of CovS inactivation in such acapsular strains. Using publicly available complete genomes (n = 2,455) of invasive GAS strains, we identified similar rates of CovRS inactivation and limited evidence for transmission of CovRS-mutated isolates for both encapsulated and acapsular emm types. Relative to encapsulated GAS, CovS transcriptomes of the prevalent acapsular emm types emm28, emm87, and emm89 revealed unique impacts such as increased transcript levels of genes in the emm/mga region along with decreased transcript levels of pilus operon-encoding genes and the streptokinase-encoding gene ska. CovS inactivation in emm87 and emm89 strains, but not emm28, increased GAS survival in human blood. Moreover, CovS inactivation in acapsular GAS reduced adherence to host epithelial cells. These data suggest that the hypervirulence induced by CovS inactivation in acapsular GAS follows distinct pathways from the better studied encapsulated strains and that factors other than hyperencapsulation may account for the lack of transmission of CovRS-mutated strains. IMPORTANCE Devastating infections due to group A streptococci (GAS) tend to occur sporadically and are often caused by strains that contain mutations in the control of virulence regulatory system (CovRS). In well-studied emm1 GAS, the increased production of capsule induced by CovRS mutation is considered key to both hypervirulence and limited transmissibility by interfering with proteins that mediate attachment to eukaryotic cells. Herein, we show that the rates of covRS mutations and genetic clustering of CovRS-mutated isolates are independent of capsule status. Moreover, we found that CovS inactivation in multiple acapsular GAS emm types results in dramatically altered transcript levels of a diverse array of cell-surface protein-encoding genes and a unique transcriptome relative to encapsulated GAS. These data provide new insights into how a major human pathogen achieves hypervirulence and indicate that factors other than hyperencapsulation likely account for the sporadic nature of the severe GAS disease.
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- 2023
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220. Temporal dynamics of genetically heterogeneous extended-spectrum cephalosporin-resistant Escherichia coli bloodstream infections
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William C. Shropshire, Benjamin Strope, Selvalakshmi Selvaraj Anand, Jordan Bremer, Patrick McDaneld, Micah M. Bhatti, Anthony R. Flores, Awdhesh Kalia, and Samuel A. Shelburne
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antimicrobial resistance ,extended-spectrum cephalosporin resistance ,extended-spectrum beta-lactamases ,molecular epidemiology ,clonal complex 131 ,accessory genomes ,Microbiology ,QR1-502 - Abstract
ABSTRACT Extended-spectrum cephalosporin-resistant Escherichia coli (ESC-R-Ec) is an urgent public health threat with sequence type clonal complex 131 (STc131), phylogroup B2 strains being particularly concerning as the dominant cause of ESC-R-Ec infections. To address the paucity of recent ESC-R-Ec molecular epidemiology data in the United States, we used whole-genome sequencing (WGS) to fully characterize a large cohort of invasive ESC-R-Ec at a tertiary care cancer center in Houston, Texas, collected from 2016 to 2020. During the study time frame, there were 1,154 index E. coli bloodstream infections (BSIs) of which 389 (33.7%) were ESC-R-Ec. Using time series analyses, we identified a temporal dynamic of ESC-R-Ec distinct from ESC-susceptible E. coli (ESC-S-Ec), with cases peaking in the last 6 months of the calendar year. WGS of 297 ESC-R-Ec strains revealed that while STc131 strains accounted for ~45% of total BSIs, the proportion of STc131 strains remained stable across the study time frame with infection peaks driven by genetically heterogeneous ESC-R-Ec clonal complexes. blaCTX-M variants accounted for most β-lactamases conferring the ESC-R phenotype (89%; 220/248 index ESC-R-Ec), and amplification of blaCTX-M genes was widely detected in ESC-R-Ec strains, particularly in carbapenem non-susceptible, recurrent BSI strains. BlaCTX-M-55 was significantly enriched within phylogroup A strains, and we identified blaCTX-M-55 plasmid-to-chromosome transmission occurring across non-B2 strains. Our data provide important information regarding the current molecular epidemiology of invasive ESC-R-Ec infections at a large tertiary care cancer center and provide novel insights into the genetic basis of observed temporal variability for these clinically important pathogens. IMPORTANCE Given that E. coli is the leading cause of worldwide ESC-R Enterobacterales infections, we sought to assess the current molecular epidemiology of ESC-R-Ec using a WGS analysis of many BSIs over a 5-year period. We identified fluctuating temporal dynamics of ESC-R-Ec infections, which have also recently been identified in other geographical regions such as Israel. Our WGS data allowed us to visualize the stable nature of STc131 over the study period and demonstrate a limited but genetically diverse group of ESC-R-Ec clonal complexes are detected during infection peaks. Additionally, we provide a widespread assessment of β-lactamase gene copy number in ESC-R-Ec infections and delineate mechanisms by which such amplifications are achieved in a diverse array of ESC-R-Ec strains. These data suggest that serious ESC-R-Ec infections are driven by a diverse array of strains in our cohort and impacted by environmental factors suggesting that community-based monitoring could inform novel preventative measures.
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- 2023
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221. Characterization of the Type I Restriction Modification System Broadly Conserved among Group A Streptococci
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Sruti DebRoy, William C. Shropshire, Chau Nguyen Tran, Haiping Hao, Marc Gohel, Jessica Galloway-Peña, Blake Hanson, Anthony R. Flores, and Samuel A. Shelburne
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Streptococcus pyogenes ,type I RM system ,immunity ,Microbiology ,QR1-502 - Abstract
ABSTRACT Although prokaryotic DNA methylation investigations have long focused on immunity against exogenous DNA, it has been recently recognized that DNA methylation impacts gene expression and phase variation in Streptococcus pneumoniae and Streptococcus suis. A comprehensive analysis of DNA methylation is lacking for beta-hemolytic streptococci, and thus we sought to examine DNA methylation in the major human pathogen group A Streptococcus (GAS). Using a database of 224 GAS genomes encompassing 80 emm types, we found that nearly all GAS strains encode a type I restriction modification (RM) system that lacks the hsdS′ alleles responsible for impacting gene expression in S. pneumoniae and S. suis. The GAS type I system is located on the core chromosome, while sporadically present type II orphan methyltransferases were identified on prophages. By combining single-molecule real-time (SMRT) analyses of 10 distinct emm types along with phylogenomics of 224 strains, we were able to assign 13 methylation patterns to the GAS population. Inactivation of the type I RM system, occurring either naturally through phage insertion or through laboratory-induced gene deletion, abrogated DNA methylation detectable via either SMRT or MinION sequencing. Contrary to a previous report, inactivation of the type I system did not impact transcript levels of the gene (mga) encoding the key multigene activator protein (Mga) or Mga-regulated genes. Inactivation of the type I system significantly increased plasmid transformation rates. These data delineate the breadth of the core chromosomal type I RM system in the GAS population and clarify its role in immunity rather than impacting Mga regulon expression. IMPORTANCE The advent of whole-genome approaches capable of detecting DNA methylation has markedly expanded appreciation of the diverse roles of epigenetic modification in prokaryotic physiology. For example, recent studies have suggested that DNA methylation impacts gene expression in some streptococci. The data described herein are from the first systematic analysis of DNA methylation in a beta-hemolytic streptococcus and one of the few analyses to comprehensively characterize DNA methylation across hundreds of strains of the same bacterial species. We clarify that DNA methylation in group A Streptococcus (GAS) is primarily due to a type I restriction modification (RM) system present in the core genome and does not impact mga-regulated virulence gene expression, but does impact immunity against exogenous DNA. The identification of the DNA motifs recognized by each type I RM system may assist with optimizing methods for GAS genetic manipulation and help us understand how bacterial pathogens acquire exogenous DNA elements.
- Published
- 2021
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222. Observational Cohort Study of Oral Mycobiome and Interkingdom Interactions over the Course of Induction Therapy for Leukemia
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Sarah Robinson, Christine B. Peterson, Pranoti Sahasrabhojane, Nadim J. Ajami, Samuel A. Shelburne, Dimitrios P. Kontoyiannis, and Jessica R. Galloway-Peña
- Subjects
mycobiome ,interkingdom interactions ,leukemia ,induction chemotherapy ,Malassezia ,Microbiology ,QR1-502 - Abstract
ABSTRACT Although the term “microbiome” refers to all microorganisms, the majority of microbiome studies focus on the bacteriome. Here, we characterize the oral mycobiome, including mycobiome-bacteriome interactions, in the setting of remission-induction chemotherapy (RIC) for acute myeloid leukemia (AML). Oral samples (n = 299) were prospectively collected twice weekly from 39 AML patients during RIC until neutrophil recovery. Illumina MiSeq 16S rRNA gene (V4) and internal transcribed spacer 2 (ITS2) sequencing were used to determine bacterial and fungal diversity and community composition. Intrakingdom and interkingdom network connectivity at baseline (T1) and at midpoint (T3) and a later time point (T6) were assessed via SPIEC-EASI (sparse inverse covariance estimation for ecological association inference). In this exploratory study, mycobiome α-diversity was not significantly associated with antibiotic or antifungal receipt. However, postchemotherapy mycobiome α-diversity was lower in subjects receiving high-intensity chemotherapy. Additionally, greater decreases in Malassezia levels were seen over time among patients on high-intensity RIC compared to low-intensity RIC (P = 0.003). A significantly higher relative abundance of Candida was found among patients who had infection (P = 0.008), while a significantly higher relative abundance of Fusarium was found among patients who did not get an infection (P = 0.03). Analyses of intrakingdom and interkingdom relationships at T1, T3, and T6 indicated that interkingdom connectivity increased over the course of IC as bacterial α-diversity diminished. In (to our knowledge) the first longitudinal mycobiome study performed during AML RIC, we found that mycobiome-bacteriome interactions are highly dynamic. Our study data suggest that inclusion of mycobiome analysis in the design of microbiome studies may be necessary to optimally understand the ecological and functional role of microbial communities in clinical outcomes. IMPORTANCE This report highlights the importance of longitudinal, parallel characterization of oral fungi and bacteria in order to better elucidate the dynamic changes in microbial community structure and interkingdom functional interactions during the injury of chemotherapy and antibiotic exposure as well as the clinical consequences of these interrelated alterations.
- Published
- 2020
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223. Streptococcus mitis Strains Causing Severe Clinical Disease in Cancer Patients
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Samuel A. Shelburne, Pranoti Sahasrabhojane, Miguel Saldana, Hui Yao, Xiaoping Su, Nicola Horstmann, Erika Thompson, and Anthony R. Flores
- Subjects
viridans group streptococci ,bacteremia ,neutropenia ,Pitt bacteremia score ,Streptococcus mitis ,cancer patients ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
The genetically diverse viridans group streptococci (VGS) are increasingly recognized as the cause of a variety of human diseases. We used a recently developed multilocus sequence analysis scheme to define the species of 118 unique VGS strains causing bacteremia in patients with cancer; Streptococcus mitis (68 patients) and S. oralis (22 patients) were the most frequently identified strains. Compared with patients infected with non–S. mitis strains, patients infected with S. mitis strains were more likely to have moderate or severe clinical disease (e.g., VGS shock syndrome). Combined with the sequence data, whole-genome analyses showed that S. mitis strains may more precisely be considered as >2 species. Furthermore, we found that multiple S. mitis strains induced disease in neutropenic mice in a dose-dependent fashion. Our data define the prominent clinical effect of the group of organisms currently classified as S. mitis and lay the groundwork for increased understanding of this understudied pathogen.
- Published
- 2014
- Full Text
- View/download PDF
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