425 results on '"Rudenskaya, G."'
Search Results
202. The cellular location of proteolytic enzymes of Bacillus intermedius
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Sharipova M., Shakirov E., Balaban N., Gabdrakhmanova L., Shilova M., Rudenskaya G., Leshchinskaya I., Sharipova M., Shakirov E., Balaban N., Gabdrakhmanova L., Shilova M., Rudenskaya G., and Leshchinskaya I.
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The activities of proteinases in the culture fluid and cellular fractions of Bacillus intermedius 3-19 grown under various conditions were studied. Thiol-dependent serine proteinase was the prevalent enzyme in the total pool of extracellular proteinases (70%); its catalytically active form was also detected in the cell membrane and, during active enzyme production, in the cell wall. Another enzyme, glutamyl endopeptidase (10% of the total pool), was detected in the cell membrane; it was also found in the cell wall and cytoplasm during active enzyme secretion into the growth medium. The production of these enzymes was maximal on medium containing inorganic phosphate and gelatin and decreased 2- to 4-fold on medium with glucose and lactate. The level of activity of extracellular enzymes correlated with that of corresponding membrane-bound proteins. The addition of CoCl2 (2 mM) into the medium caused an essential increase in extracellular glutamyl endopeptidase activity and promoted the release of the membrane-bound enzyme into the culture fluid. Proteolytic activity towards casein was also detected in the cytoplasm. The proteinases localized in the cytoplasm were shown to differ in their properties from those secreted. © 2000 MAIK "Nauka/Interperiodica".
203. Membrane-bound forms of serine proteases in Bacillus intermedius
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Sharipova M., Mardanova A., Balaban N., Gabdrakhmanova L., Shilova M., Chastukhina I., Rudenskaya G., Leshchinskaya I., Sharipova M., Mardanova A., Balaban N., Gabdrakhmanova L., Shilova M., Chastukhina I., Rudenskaya G., and Leshchinskaya I.
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Proteolytic proteins solubilized from the membrane of Bacillus intermedius were studied by electrophoresis. The content of membrane-bound proteinases was lower in cells grown in the presence of glucose. Proteinase enzymograms revealed four molecular forms of subtilisin and four molecular forms of glutamyl endopeptidase. The electrophoretic mobility of one of the molecular forms was similar to those of the mature extracellular proteinases. Chromatography of membrane proteins on a MonoS column yielded four protein fractions that caused hydrolysis of Z-Glu-pNA and four fractions that caused hydrolysis of Z-Ala-Ala-Leu-pNA, which is in agreement with the results of electrophoresis. The molecular forms of proteinases identified in the membrane may reflect various stages of biogenesis of the corresponding extracellular enzymes.
204. Optimized medium for the efficient production of Bacillus intermedium glutamyl endopeptidase by the recombinant Bacillus subtilis strain AJ73
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Gabdrakhmanova L., Shakirov E., Balaban N., Sharipova M., Rudenskaya G., Kostrov S., Akimkina T., Leshchinskaya I., Gabdrakhmanova L., Shakirov E., Balaban N., Sharipova M., Rudenskaya G., Kostrov S., Akimkina T., and Leshchinskaya I.
- Abstract
A nutrient medium was elaborated for the efficient production of glutamyl endopeptidase by the recombinant Bacillus subtilis strain AJ73 bearing the Bacillus intermedius 3-19 glutamyl endopeptidase gene within a multicopy plasmid. Optimal concentrations of the main nutrients, peptone and inorganic phosphate, were found using a multifactor approach. To provide for active growth and efficient glutamyl endopeptidase production, the cultivation medium of the recombinant strain should be enriched in phosphorus, organic and inorganic nitrogen sources, and yeast extract. Complex protein substrates, such as casein and gelatin, enhanced the biosynthesis of glutamyl endopeptidase. At the same time, easily metabolizable carbon sources suppressed it. The production of glutamyl endopeptidase was stimulated by the bivalent cations Ca2+, Mg2+, and Co2+. © 2000 MAIK "Nauka/Interperiodica".
205. Conditions of the biosynthesis of an extracellular subtilisin-like proteinase by Bacillus pumilus KMM 62
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Malikova L., Mardanova A., Sokolova O., Balaban N., Rudenskaya G., Sharipova M., Malikova L., Mardanova A., Sokolova O., Balaban N., Rudenskaya G., and Sharipova M.
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The influence of the cultivation conditions on Bacillus pumilus KMM 62 growth and effectiveness of the production of a subtilisin-like serine proteinase were investigated. Enzyme accumulation in the culture fluid reached the maximum value after 32 and 46-48 h of growth; it depends on the composition of the nutrient medium. The ratio of the concentrations of two main components of the medium, peptone and inorganic phosphate, which was optimal for enzyme biosynthesis was determined by multifactor experiments. Ammonium salts, when introduced as an additional nitrogen source, had different effects on the proteinase biosynthesis at different growth stages: they suppress enzyme production at the early stationary growth phase and stimulate the biosynthesis of the enzyme after 46-48 h of growth. Complex organic substrates (albumin, casein, hemoglobin, and gelatin) have a repressive effect on the biosynthesis of the enzyme. The effect of amino acids on culture growth and enzyme biosynthesis during the early and late stationary growth phase is different. Hydrophilic amino acids, glutamine, and glutamic acid exhibit the most pronounced repressive action on biosynthesis. The involvement of different regulatory mechanisms of the synthesis of this proteinase is assumed in the early and late stationary phases of growth. © Nauka/Interperiodica 2007.
206. Growth conditions and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant Bacillus subtilis strain
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Kirillova Y., Mikhailova E., Balaban N., Mardanova A., Rudenskaya G., Kostrov S., Sharipova M., Kirillova Y., Mikhailova E., Balaban N., Mardanova A., Rudenskaya G., Kostrov S., and Sharipova M.
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The effect of the components of the nutrient medium on growth and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant strain Bacillus subtilis AJ73(pCS9) was studied. The production of proteinase was found to be dependent on the composition of the nutrient medium and showed two peaks, at the 28th and 48th h of growth. The concentrations of the main components of the nutrient medium (peptone and inorganic phosphate) optimal for the biosynthesis of subtilisin-like serine proteinase at the 28th and 48th h of growth were determined in factorial experiments. Complex organic substances, casein at concentrations of 0.5-1%, gelatin at concentrations of 0.5-1%, and yeast extract at a concentration of 0.5%, stimulated the production of subtilisin-like serine proteinase by the recombinant strain. The study of the sporulation dynamics in this strain showed that the proteinase peaks at the 28th and 48th h of growth correspond, respectively, to the initial stage of sporulation and to the terminal stages of endospore formation (V-VII stages of sporulation). © Pleiades Publishing, Inc., 2006.
207. Effect of nutrients on the accumulation of glutamyl endopeptidase in the culture liquid of Bacillus intermedius 3-19
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Shakirov E., Gabdrakhmanova L., Balaban N., Sharipova M., Rudenskaya G., Leshchinskaya I., Shakirov E., Gabdrakhmanova L., Balaban N., Sharipova M., Rudenskaya G., and Leshchinskaya I.
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The effect of nutrients and growth conditions on the accumulation of glutamyl endopeptidase in the culture liquid of Bacillus intermedius 3-19 was studied. Glucose and other readily metabolizable carbon sources were found to suppress the production of the enzyme, whereas inorganic phosphate and ammonium cations enhanced it. Protein substrates, such as casein, gelatin, and hemoglobin, did not affect enzyme production. Some bivalent cations (Ca2+, Mg2+, Co2+) increased the production of glutamyl endopeptidase, but others (Zn2+, Fe2+, Cu2+) acted in the opposite way. The rate of enzyme accumulation in the culture liquid increased as the growth rate of the bacterium decreased, so that the maximum enzyme activity was observed in the stationary growth phase. Based on the results of this investigation, an optimal medium for the maximum production of glutamyl endopeptidase by B. intermedius 3-19 was elaborated. © 2000 MAIK "Nauka/Interperiodica".
208. The regulation of Bacillus intermedius glutamyl endopeptidase biosynthesis in the recombinant Bacillus subtilis strain AJ73 during sporulation
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Chastukhina I., Sharipova M., Gabdrakhmanova L., Balaban N., Safina D., Kostrov S., Rudenskaya G., Leshchinskaya I., Chastukhina I., Sharipova M., Gabdrakhmanova L., Balaban N., Safina D., Kostrov S., Rudenskaya G., and Leshchinskaya I.
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The growth of the recombinant Bacillus subtilis strain AJ73 carrying the Bacillus intermedius 3-19 glutamyl endopeptidase gene on a multicopy plasmid and the effect of some nutrients on the efficiency of extracellular glutamyl endopeptidase production in the stationary growth phase were studied. In this phase, the concentration of glutamyl endopeptidase in the culture liquid peaked at the 48th and 78th h of cultivation and depended on the composition of the cultivation medium. Unlike the synthesis of glutamyl endopeptidase in the trophophase (i.e., during vegetative growth), which was suppressed by glucose, the synthesis of this enzyme during sporulation was resistant to glucose present in the cultivation medium. A multifactorial experimental design allowed optimal proportions between the concentrations of major nutrients (peptone and inorganic phosphate) to be determined. Inorganic phosphate and ammonium ions augmented the production of glutamyl endopeptidase by 30-150%, and complex organic substrates, such as casein and gelatin, enhanced the production of glutamyl endopeptidase by 50-100%. During sporulation, the production of glutamyl endopeptidase was stimulated by some bivalent cations (Ca2+, Mg2+, and Co2+) and inhibited by others (Zn2+, Fe2+, and Cu2+). The inference is drawn that the regulatory mechanisms of glutamyl endopeptidase synthesis during vegetative growth and sporulation are different.
209. Optimization of cultivation medium for the production of Bacillus intermedius 3-19 glutamyl endopeptidase
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Gabdrakhmanova L., Balaban N., Sharipova M., Tokmakova Y., Sokolova E., Rudenskaya G., Leshchinskaya I., Gabdrakhmanova L., Balaban N., Sharipova M., Tokmakova Y., Sokolova E., Rudenskaya G., and Leshchinskaya I.
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The effect of some components of cultivation medium on the growth of the streptomycin-resistant Bacillus intermedius strain 3-19 and on the production of glutamyl endopeptidase was investigated using factorial experimental design, which allowed the concentrations of peptone and inorganic phosphate to be optimized for the maximum production of the enzyme. Experiments with different peptones and casamino acids showed that the enzyme production is maximum with peptone 3 of plant origin. The addition of casamino acids or amino acids to the peptone-containing cultivation medium inhibited the production of glutamyl endopeptidase. © 2002 MAIK "Nauka/Interperiodica".
210. Optimized medium for the efficient production of bacillus intermedium glutamyl endopeptidase by the recombinant bacillus subtilis
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Gabdrakhmanova L., Shakirov E., Balaban N., Sharipova M., Rudenskaya G., Gabdrakhmanova L., Shakirov E., Balaban N., Sharipova M., and Rudenskaya G.
- Abstract
A nutrient medium was elaborated for the efficient production of glutamyl endopeptidase by the recombinant Bacillus subtilis strain AJ73 bearing the Bacillus intermedius 3-19 glutamyl endopeptidase gene within a multicopy plasmid. Optimal concentrations of the main nutrients, peptone and inorganic phosphate, were found using a multifactor approach. To provide for active growth and efficient glutamyl endopeptidase production, the cultivation medium of the recombinant strain should be enriched in phosphorus, organic and inorganic nitrogen sources, and yeast extract. Complex protein substrates, such as casein and gelatin, enhanced the biosynthesis of glutamyl endopeptidase. At the same time, easily metabolizable carbon sources suppressed it. The production of glutamyl endopeptidase was stimulated by the bivalent cations Ca2+, Mg2+, and Co2+.
211. Isolation and characterization of glutamyl endopeptidase 2 from Bacillus intermedius 3-19
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Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Garusov A., Milgotina E., Rudenskaya G., Leshchinskaya I., Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Garusov A., Milgotina E., Rudenskaya G., and Leshchinskaya I.
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The culture filtrate of Bacillus intermedius 3-19 was used for isolation by chromatography on CM-cellulose and Mono S columns of a proteinase that is secreted during the late stages of growth. The enzyme is irreversibly inhibited by the inhibitor of serine proteinases diisopropyl fluorophosphate, has two pH optima (7.2 and 9.5) for casein hydrolysis and one at pH 8.5 for Z-Glu-pNA hydrolysis. The molecular weight of the enzyme is 26.5 kD. The Km for Z-Glu-pNA hydrolysis is 0.5 mM. The temperature and pH dependences of the stability of the proteinase were studied. The enzyme was identified as glutamyl endopeptidase 2. The N-terminal sequence (10 residues) and amino acid composition of the enzyme were determined. The enzyme hydrolyzes Glu4-Gln5, Glu17-Asp18, and Cys11-Ser12 bonds in the oxidized A-chain of insulin and Glu13-Ala14, Glu21-Arg22, Cys7-Gly8, and Cys19-Gly20 bonds in the oxidized B-chain of insulin.
212. Membrane-bound forms of serine proteases in Bacillus intermedius
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Sharipova M., Mardanova A., Balaban N., Gabdrakhmanova L., Shilova M., Chastukhina I., Rudenskaya G., Leshchinskaya I., Sharipova M., Mardanova A., Balaban N., Gabdrakhmanova L., Shilova M., Chastukhina I., Rudenskaya G., and Leshchinskaya I.
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Proteolytic proteins solubilized from the membrane of Bacillus intermedius were studied by electrophoresis. The content of membrane-bound proteinases was lower in cells grown in the presence of glucose. Proteinase enzymograms revealed four molecular forms of subtilisin and four molecular forms of glutamyl endopeptidase. The electrophoretic mobility of one of the molecular forms was similar to those of the mature extracellular proteinases. Chromatography of membrane proteins on a MonoS column yielded four protein fractions that caused hydrolysis of Z-Glu-pNA and four fractions that caused hydrolysis of Z-Ala-Ala-Leu-pNA, which is in agreement with the results of electrophoresis. The molecular forms of proteinases identified in the membrane may reflect various stages of biogenesis of the corresponding extracellular enzymes.
213. Glutamyl endopeptidase of Bacillus intermedius, strain 3-19
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Leshchinskaya I., Shakirov E., Itskovitch E., Balaban N., Mardanova A., Sharipova M., Viryasov M., Rudenskaya G., Stepanov V., Leshchinskaya I., Shakirov E., Itskovitch E., Balaban N., Mardanova A., Sharipova M., Viryasov M., Rudenskaya G., and Stepanov V.
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A homogeneous glutamyl endopeptidase splitting peptide bonds of glutamic, rarely of aspartic acid residues in peptides and proteins, was isolated from Bacillus intermedius 3-19 culture filtrate using chromatography on CM cellulose and Mono S. The enzyme molecular mass is equal to 29 kDa, pI 8.4. The protease is inhibited by diisopropylfluorophosphate. The enzyme, like other glutamyl endopeptidases, reveals two pH optima at pH 7.5 and 9.0 for casein and one at pH 8.0 for Z-Glu-pNA hydrolysis. A 6 mM K(m) is found for hydrolysis of the latter substrate. The enzyme activity optimum lies at 55°C, and it is stable at pH 6.5-11.0. Its N-terminal sequence shows 56% coinciding residues when compared with that of Bacillus licheniformis glutamyl endopeptidase.
214. The regulation of Bacillus intermedius glutamyl endopeptidase biosynthesis in the recombinant Bacillus subtilis strain AJ73 during sporulation
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Chastukhina I., Sharipova M., Gabdrakhmanova L., Balaban N., Safina D., Kostrov S., Rudenskaya G., Leshchinskaya I., Chastukhina I., Sharipova M., Gabdrakhmanova L., Balaban N., Safina D., Kostrov S., Rudenskaya G., and Leshchinskaya I.
- Abstract
The growth of the recombinant Bacillus subtilis strain AJ73 carrying the Bacillus intermedius 3-19 glutamyl endopeptidase gene on a multicopy plasmid and the effect of some nutrients on the efficiency of extracellular glutamyl endopeptidase production in the stationary growth phase were studied. In this phase, the concentration of glutamyl endopeptidase in the culture liquid peaked at the 48th and 78th hours of cultivation and depended on the composition of the cultivation medium. Unlike the synthesis of glutamyl endopeptidase in the trophophase (i.e., during vegetative growth), which was suppressed by glucose, the synthesis of this enzyme during sporulation was resistant to glucose present in the cultivation medium. A multifactorial experimental design allowed optimal proportions between the concentrations of major nutrients (peptone and inorganic phosphate) to be determined. Inorganic phosphate and ammonium ions augmented the production of glutamyl endopeptidase by 30-150%, and complex organic substrates, such as casein and gelatin, enhanced the production of glutamyl endopeptidase by 50-100%. During sporulation, the production of glutamyl endopeptidase was stimulated by some bivalent cations (Ca2+, Mg2+, and Co2+) and inhibited by others (Zn2+, Fe2+, and Cu2+). The inference is drawn that the regulatory mechanisms of glutamyl endopeptidase synthesis during vegetative growth and sporulation are different.
215. Secreted hydrolases from streptomycin-resistant strains of Bacillus intermedius
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Sharipova M., Balaban N., Nekhotyaeva N., Itskovich E., Shakirov E., Leshchinskaya I., Rudenskaya G., Sharipova M., Balaban N., Nekhotyaeva N., Itskovich E., Shakirov E., Leshchinskaya I., and Rudenskaya G.
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Alkaline phosphatases and serine proteinases have been isolated from the culture liquid of streptomycin-resistant strains of Bacillus intermedius using ion-exchange and affinity chromatography and FPLC. Substrate blotting and electrophoresis revealed two phosphatase forms with molecular masses of 40 and 50 kD. The enzyme had maximal activity at pH 9.5 and 50°C and could cleave the phosphate moiety from a range of substrates. It is suggested that both forms of the phosphatase are products of processing that involves a serine proteinase. Two proteinases, with molecular masses of 29 and 33 kD, were purified to homogeneity from the culture liquid of A. intermedius S7. The protein from the major peak was identical in its properties to an earlier described serine proteinase. The minor peak was 5% of the major one. These enzymes had different pH optima. Inhibitor analysis indicated that the minor peak is also a serine proteinase.
216. Isolation and characterization of glutamyl endopeptidase 2 from Bacillus intermedius 3-19
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Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Garusov A., Milgotina E., Rudenskaya G., Leshchinskaya I., Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Garusov A., Milgotina E., Rudenskaya G., and Leshchinskaya I.
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The culture filtrate of Bacillus intermedius 3-19 was used for isolation by chromatography on CM-cellulose and Mono S columns of a proteinase that is secreted during the late stages of growth. The enzyme is irreversibly inhibited by the inhibitor of serine proteinases diisopropyl fluorophosphate, has two pH optima (7.2 and 9.5) for casein hydrolysis and one at pH 8.5 for Z-Glu-pNA hydrolysis. The molecular weight of the enzyme is 26.5 kD. The Km for Z-Glu-pNA hydrolysis is 0.5 mM. The temperature and pH dependences of the stability of the proteinase were studied. The enzyme was identified as glutamyl endopeptidase 2. The N-terminal sequence (10 residues) and amino acid composition of the enzyme were determined. The enzyme hydrolyzes Glu4-Gln5, Glu17-Asp18, and Cys11-Ser12 bonds in the oxidized A-chain of insulin and Glu13-Ala14, Glu21-Arg22, Cys7-Gly8, and Cys19-Gly20 bonds in the oxidized B-chain of insulin.
217. Purification and characterization of a subtilisin-like proteinases secreted in the stationary growth phase of Bacillus amyloliquefaciens H2
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Balaban N., Malikova L., Mardanova A., Rudenskaya G., Sharipova M., Balaban N., Malikova L., Mardanova A., Rudenskaya G., and Sharipova M.
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Proteinases secreted during the early and late stationary phases have been isolated from the culture liquid of Bacillus amyloliquefaciens H2 using CM-cellulose ion-exchange chromatography with subsequent FPLC on a Mono S column. Considering the character of hydrolysis of specific chromogenic substrates and the type of inhibition, these enzymes were identified as subtilisin-like proteinases. The molecular weight of both proteinases is 29 kD. The proteolytic activity of the proteinases secreted during the early and late stationary phases towards the synthetic substrate Z-Ala-Ala-Leu-pNA was maximal at pH 8.5 and 9.0, respectively. The maximal activity of both proteinases was observed at 37°C, and the proteins were stable within the pH range of 7.2-9.5. The subtilisin-like proteinases from B. amyloliquefaciens were shown to catalyze synthesis of peptide bonds. © Nauka/Interperiodica 2007.
218. Isolation and characterization of a subtilisin-like proteinase of Bacillus intermedius secreted by the Bacillus subtilis recombinant strain AJ73 at different growth stages
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Mikhailova E., Mardanova A., Balaban N., Rudenskaya G., Sharipova M., Mikhailova E., Mardanova A., Balaban N., Rudenskaya G., and Sharipova M.
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Two subtilisin-like serine proteinases of Bacillus intermedius secreted by the Bacillus subtilis recombinant strain AJ73 (pCS9) on the 28th and 48th h of culture growth (early and late proteinase, respectively) have been isolated by ion-exchange chromatography on CM-cellulose and by FPLC. Molecular weights of both proteinases were determined. The N-terminal sequences of the recombinant protein and mature proteinases of the original strain were compared. Kinetic parameters and substrate specificities of the early and late proteinase were analyzed. Physicochemical properties of the enzymes were studied. © Nauka/Interperiodica 2007.
219. Characteristics of a novel secreted zinc-dependent endopeptidase of Bacillus intermedius
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Rudakova N., Balaban N., Danilova Y., Rudenskaya G., Sharipova M., Rudakova N., Balaban N., Danilova Y., Rudenskaya G., and Sharipova M.
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A novel zinc-dependent metalloendopeptidase of Bacillus intermedius (MprBi) was purified from the culture medium of a recombinant strain of Bacillus subtilis. The amino acid sequence of the homogeneous protein was determined using MALDI-TOF mass spectrometry. The sequence of the first ten residues from the N-terminus of the mature protein is ASTGSQKVTV. Physicochemical properties of the enzyme and its substrate specificity have been studied. The molecular weight of the metalloproteinase constitutes 19 kDa, the K m and k cat values are 0.06 mM and 1210 sec-1, respectively, and the pI value is 5.4. The effect of different inhibitors and metal ions on the enzyme activity has been studied. Based on the analysis of the amino acid sequence of the active site motif and the Met-turn together with the enzyme characteristics, the novel bacterial metalloproteinase MprBi is identified as a metzincin clan adamalysin/reprolysin-like metalloprotease. © 2010 Pleiades Publishing, Ltd.
220. Biochemical properties of Bacillus intermedius subtilisin-like proteinase secreted by a Bacillus subtilis recombinant strain in its stationary phase of growth
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Mikhailova E., Mardanova A., Balaban N., Rudenskaya G., Ilyinskaya O., Sharipova M., Mikhailova E., Mardanova A., Balaban N., Rudenskaya G., Ilyinskaya O., and Sharipova M.
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Biochemical properties of Bacillus intermedius subtilisin-like proteinase (AprBi) secreted by a B. subtilis recombinant strain in the early and late stationary phases of growth have been determined. Protein structure was analyzed and its stability estimated. It was noted that the enzyme corresponding to different phases of bacterial growth retains activity in the presence of reducing and oxidizing agents (C2H5OH and H 2O2). Different effects of bivalent metal ions on activity of two proteinase fractions were found. Calcium ions more efficiently activate proteinase secreted in the late stationary phase. Unlike the first enzyme fraction, the second forms catalytically active dimers. © 2009 Pleiades Publishing, Ltd.
221. Purification and characterization of serine proteinase 2 from Bacillus intermedius 3-19
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Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Rudenskaya G., Leshchinskaya I., Balaban N., Mardanova A., Sharipova M., Gabdrakhmanova L., Sokolova E., Rudenskaya G., and Leshchinskaya I.
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A proteinase secreted in the late stationary phase was isolated from the culture fluid of Bacillus intermedius 3-19 by ion-exchange chromatography on CM-cellulose followed by FPLC on a Mono S column. The enzyme was completely inhibited by the serine proteinase inhibitors diisopropyl fluorophosphate and phenylmethylsulfonyl fluoride. The maximum proteolytic activity against the synthetic chromogenic substrate Z-Ala-Ala-Leu-pNA was observed at pH 9.0. The molecular weight of the enzyme is 28 kD and its isoelectric point is 9.2. We have also determined pH- and thermostability and Km and k cat of this proteinase. The enzyme has been classified as a thiol-dependent serine proteinase. N-Terminal amino acid sequence (10 residues) and amino acid composition of the protein were also determined. By the mode of hydrolysis of peptide bonds in the oxidized B-chain of insulin, this enzyme is similar to the thiol-dependent serine proteinase 1 from B. intermedius 3-19 secreted during vegetative growth.
222. Enzymatic properties of thiol-dependent serine proteinase of Bacillus intermedius 3-19
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Itskovich E., Balaban N., Mardanova A., Shakirov E., Sharipova M., Leshchinskaya I., Ksenofontov A., Rudenskaya G., Itskovich E., Balaban N., Mardanova A., Shakirov E., Sharipova M., Leshchinskaya I., Ksenofontov A., and Rudenskaya G.
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Effects of a thiol-dependent serine proteinase of Bacillus intermedius on peptide substrates and insulin B-chain were studied. The enzyme preferably splits peptide bonds formed by carboxyl groups of hydrophobic amino acids. Ca2+ increases the thermal stability of the proteinase significantly. The kinetic characteristics of hydrolysis of Z-Ala-Ala-Leu-pNA by this enzyme was determined as Km = 1.25 mM and kcat = 0.15 sec-1. The enzyme has high stability to DMFA and isopropanol, and is able to catalyze peptide bond synthesis.
223. A novel secreted metzincin metalloproteinase from Bacillus intermedius
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Sabirova A., Rudakova N., Balaban N., Ilyinskaya O., Demidyuk I., Kostrov S., Rudenskaya G., Sharipova M., Sabirova A., Rudakova N., Balaban N., Ilyinskaya O., Demidyuk I., Kostrov S., Rudenskaya G., and Sharipova M.
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The mprBi gene from Bacillus intermedius 3-19 encoding a novel secreted metalloproteinase was identified. The mpriBi gene was expressed in an extracellular proteinase-deficient Bacillus subtilis BG 2036 strain and the corresponding protein was characterized biochemically. The 19. kDa MprBi protein was purified to homogeneity and sequenced by mass spectroscopy and Edman degradation methods. Amino acid sequence analysis of MprBi identified an active site motif HEYGHNFGLPHD and a conserved structural component Met-turn, both of which are unique features of the metzincin clan. Furthermore, MprBi harbors a number of distinct sequence elements characteristic of proteinase domains in eukaryotic adamalysins. We conclude that MprBi and similar proteins from other Bacillus species form a novel group of metzincin metalloproteinases in prokaryotes. © 2010 Federation of European Biochemical Societies.
224. The preparation of biospecific sorbents by the activation of sepharose with p-benzoquinone
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Tarasova, N. I., primary, Lavrenova, G. I., additional, Rudenskaya, G. N., additional, and Stepanov, V. M., additional
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- 1977
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225. Preparation of Recombinant Serpin from Red King Crab Paralithodes сamtschaticus for Biomedical Research Purposes.
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Kostin, N., Ponomarenko, N., Isaev, V., Rudenskaya, G., Bobik, T., Gabibov, A., and Smirnov, I.
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SERPINS , *PARALITHODES , *LITHODIDAE , *MEDICAL research , *PROTEINS - Abstract
Genetic constructs with different leader sequences for intra- and extracellular expression of the target protein were generated and an original method for effective selection of clones with maximum expression was developed. For intracellular expression in the Pichia pastoris system, seprin content in cells was 6 mg/liter. [ABSTRACT FROM AUTHOR]
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- 2017
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226. SMN1 gene point mutations in type I-IV proximal spinal muscular atrophy patients with a single copy of SMN1.
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Zabnenkova, V., Dadali, E., Artemieva, S., Sharkova, I., Rudenskaya, G., and Polyakov, A.
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SPINAL muscular atrophy , *DELETION mutation , *DNA copy number variations , *HOMOZYGOSITY , *HETEROZYGOSITY , *COMPLEMENTATION (Genetics) - Abstract
Type I-IV proximal spinal muscular atrophy (SMA) is one of the most common autosomal-recessive diseases, which are characterized in the majority of cases by a severely disabling course. Proximal SMA results from mutations in the telomeric copy of SMN1 gene. Major SMN1 gene mutation types are deletions in the exons 7 and/or 8, which were revealed to be in the homozygous state in 95% of patients. Deletions in the indicated exons of SMN1 gene were revealed in a compound-heterozygous state in combination with intragenic point mutations in the remainder 5% of proximal SMA cases. In the present study, we performed an analysis of point mutations in eight patients with type I-III proximal SMA phenotype, which had a deletion in 7-8-exons of SMN1 gene in the heterozygous state. We revealed seven different mutations, two of which (c.824G>C (p.Gly275Ala) and c.825-2A>T) are described here for the first time. In addition, mutation c.824G>C (p.Gly275Ala) was observed twice in the examined sample. In seven cases a heterozygous carrier of point mutations was one of the parents of the affected children (in six cases, the father; in one case, the mother). Only one mutation, c.43C>T (p.Gln15X), emerged de novo in a generative cell or male cell of the child's father. [ABSTRACT FROM AUTHOR]
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- 2015
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227. Properties of the Bacillus pumilus Glutamyl endopeptidase at different growth stages of its recombinant strain.
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Balaban, N., Danilova, Yu., Shamsutdinov, T., Mardanova, A., Cheremin, A., Rudenskaya, G., and Sharipova, M.
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BACILLUS pumilus , *PROTEINS , *PEPTIDES , *INSULIN , *CATALYSTS - Abstract
The Bacillus pumilus 3-19 Glutamyl peptidase (EC 3.4.21.19) was isolated from the culture medium of the B. subtilis recombinant strain at the following stages of the bacillus growth: a decelerating growth phase and a stationary growth phase. The action of the purified preparations of the enzyme on different phases of its growth was studied on the insulin B-chain and various protein and peptide substrates. Physicochemical properties of the enzyme were compared for different phases of its growth. The glutamyl endopeptidase preparations differed in their catalytic characteristics and their sensitivity to the metal cations. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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228. The spectrum of CLCN1 gene mutations in patients with nondystrophic Thomsen's and Becker's myotonias.
- Author
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Ivanova, E., Dadali, E., Fedotov, V., Kurbatov, S., Rudenskaya, G., Proskokova, T., and Polyakov, A.
- Subjects
- *
MYOTONIA congenita , *DISEASE prevalence , *GENETIC mutation , *GENETIC code , *SKELETAL muscle , *MOLECULAR genetics , *PATIENTS - Abstract
Thomsen's and Becker's diseases are the most prevalent nondystrophic myotonias. Their frequency varies, according to different sources, from 1: 100000 to 1: 10000. Thomsen's myotonia is autosomal dominant, and Becker's myotonia is autosomal recessive. Both diseases result from mutations of the CLCN1 gene encoding chloride ion channels of skeletal muscles. Molecular genetic analysis of the CLCN1 gene has been performed in patients with diagnoses of nondystrophic Thomsen's and Becker's myotonias living in the Russian Federation. A sample of 79 unrelated probands with nondystrophic Thomsen's and Becker's myotonias and 44 their relatives has been formed in the Laboratory of DNA Diagnosis of the Medical Genetic Research Center of the Russian Academy of Medical Sciences. Forty CLCN1 gene mutations have been found in a total of 118 chromosomes of 66 probands, including 21 familial and 45 sporadic cases. About half the mutations detected (45%) have been found for the first time; they are not described in the SNP database (ncbi.nlm.nih.gov). The following mutations (substitutions) have been detected in more than one chromosome, accounting for a total of 59.3% of chromosomes with mutations: Gly190Ser (5.9%), c.1437_1450del14 (9.3%), Ala493Glu (5.1%), Thr550Met (3.4%), Tyr686Stop (5.1%), and Arg894Stop (30.5%). [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
229. Characteristics of a novel secreted zinc-dependent endopeptidase of Bacillus intermedius.
- Author
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Rudakova, N. L., Balaban, N. P., Danilova, Y. V., Rudenskaya, G. N., and Sharipova, M. R.
- Subjects
- *
METALLOENZYMES , *PHYSIOLOGICAL effects of zinc , *AMINO acid sequence , *BACILLUS (Bacteria) , *BACILLUS subtilis , *INTERMEDIATES (Chemistry) - Abstract
novel zinc-dependent metalloendopeptidase of Bacillus intermedius (MprBi) was purified from the culture medium of a recombinant strain of Bacillus subtilis. The amino acid sequence of the homogeneous protein was determined using MALDI-TOF mass spectrometry. The sequence of the first ten residues from the N-terminus of the mature protein is ASTGSQKVTV. Physicochemical properties of the enzyme and its substrate specificity have been studied. The molecular weight of the metalloproteinase constitutes 19 kDa, the K and k values are 0.06 mM and 1210 sec, respectively, and the p I value is 5.4. The effect of different inhibitors and metal ions on the enzyme activity has been studied. Based on the analysis of the amino acid sequence of the active site motif and the Met-turn together with the enzyme characteristics, the novel bacterial metalloproteinase MprBi is identified as a metzincin clan adamalysin/reprolysin-like metalloprotease. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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230. Biochemical properties of Bacillus intermedius subtilisin-like proteinase secreted by a Bacillus subtilis recombinant strain in its stationary phase of growth.
- Author
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Mikhailova, E. O., Mardanova, A. M., Balaban, N. P., Rudenskaya, G. N., Ilyinskaya, O. N., and Sharipova, M. R.
- Subjects
- *
BACILLUS subtilis , *PROTEINASES , *BACTERIAL growth , *OXIDIZING agents , *CALCIUM ions - Abstract
Biochemical properties of Bacillus intermedius subtilisin-like proteinase (AprBi) secreted by a B. subtilis recombinant strain in the early and late stationary phases of growth have been determined. Protein structure was analyzed and its stability estimated. It was noted that the enzyme corresponding to different phases of bacterial growth retains activity in the presence of reducing and oxidizing agents (C2H5OH and H2O2). Different effects of bivalent metal ions on activity of two proteinase fractions were found. Calcium ions more efficiently activate proteinase secreted in the late stationary phase. Unlike the first enzyme fraction, the second forms catalytically active dimers. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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- View/download PDF
231. Conditions of the biosynthesis of an extracellular subtilisin-like proteinase by Bacillus pumilus KMM 62.
- Author
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Malikova, L., Mardanova, A., Sokolova, O., Balaban, N., Rudenskaya, G., and Sharipova, M.
- Subjects
- *
BIOSYNTHESIS , *EXTRACELLULAR enzymes , *SUBTILISINS , *SERINE proteinases , *BACILLUS (Bacteria) , *BACTERIAL growth , *AMINO acids - Abstract
The influence of the cultivation conditions on Bacillus pumilus KMM 62 growth and effectiveness of the production of a subtilisin-like serine proteinase were investigated. Enzyme accumulation in the culture fluid reached the maximum value after 32 and 46–48 h of growth; it depends on the composition of the nutrient medium. The ratio of the concentrations of two main components of the medium, peptone and inorganic phosphate, which was optimal for enzyme biosynthesis was determined by multifactor experiments. Ammonium salts, when introduced as an additional nitrogen source, had different effects on the proteinase biosynthesis at different growth stages: they suppress enzyme production at the early stationary growth phase and stimulate the biosynthesis of the enzyme after 46–48 h of growth. Complex organic substrates (albumin, casein, hemoglobin, and gelatin) have a repressive effect on the biosynthesis of the enzyme. The effect of amino acids on culture growth and enzyme biosynthesis during the early and late stationary growth phase is different. Hydrophilic amino acids, glutamine, and glutamic acid exhibit the most pronounced repressive action on biosynthesis. The involvement of different regulatory mechanisms of the synthesis of this proteinase is assumed in the early and late stationary phases of growth. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
232. Purification and characterization of a subtilisin-like proteinases secreted in the stationary growth phase of Bacillus amyloliquefaciens H2.
- Author
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Balaban, N., Malikova, L., Mardanova, A., Rudenskaya, G., and Sharipova, M.
- Subjects
- *
CELLULOSE , *GLUCANS , *HYDROLYSIS , *SOLVOLYSIS , *PROTEOLYTIC enzymes - Abstract
Proteinases secreted during the early and late stationary phases have been isolated from the culture liquid of Bacillus amyloliquefaciens H2 using CM-cellulose ion-exchange chromatography with subsequent FPLC on a Mono S column. Considering the character of hydrolysis of specific chromogenic substrates and the type of inhibition, these enzymes were identified as subtilisin-like proteinases. The molecular weight of both proteinases is 29 kD. The proteolytic activity of the proteinases secreted during the early and late stationary phases towards the synthetic substrate Z-Ala-Ala-Leu-pNA was maximal at pH 8.5 and 9.0, respectively. The maximal activity of both proteinases was observed at 37°C, and the proteins were stable within the pH range of 7.2–9.5. The subtilisin-like proteinases from B. amyloliquefaciens were shown to catalyze synthesis of peptide bonds. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
233. Isolation and characterization of a subtilisin-like proteinase of Bacillus intermedius secreted by the Bacillus subtilis recombinant strain AJ73 at different growth stages.
- Author
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Mikhailova, E. O., Mardanova, A. M., Balaban, N. P., Rudenskaya, G. N., and Sharipova, M. R.
- Subjects
- *
SERINE proteinases , *BACILLUS subtilis , *MOLECULAR weights , *ION exchange chromatography , *PROTEINASES , *BACILLUS (Bacteria) - Abstract
Two subtilisin-like serine proteinases of Bacillus intermedius secreted by the Bacillus subtilis recombinant strain AJ73 (pCS9) on the 28th and 48th h of culture growth (early and late proteinase, respectively) have been isolated by ion-exchange chromatography on CM-cellulose and by FPLC. Molecular weights of both proteinases were determined. The N-terminal sequences of the recombinant protein and mature proteinases of the original strain were compared. Kinetic parameters and substrate specificities of the early and late proteinase were analyzed. Physicochemical properties of the enzymes were studied. [ABSTRACT FROM AUTHOR]
- Published
- 2007
- Full Text
- View/download PDF
234. Growth conditions and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant Bacillus subtilis strain.
- Author
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Kirillova, Yu. M., Mikhailova, E. O., Balaban, N. P., Mardanova, A. M., Rudenskaya, G. N., Kostrov, S. V., and Sharipova, M. R.
- Subjects
- *
BACILLUS subtilis , *BACILLUS (Bacteria) , *SUBTILISINS , *MICROBIAL enzymes , *SERINE proteinases , *BIOSYNTHESIS , *MICROBIOLOGY - Abstract
The effect of the components of the nutrient medium on growth and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant strain Bacillus subtilis AJ73(pCS9) was studied. The production of proteinase was found to be dependent on the composition of the nutrient medium and showed two peaks, at the 28th and 48th h of growth. The concentrations of the main components of the nutrient medium (peptone and inorganic phosphate) optimal for the biosyntheis of subtilisin-like serine proteinase at the 28th and 48th h of growth were determined in factorial experiments. Complex organic substances, casein at concentrations of 0.5–1%, gelatin at concentrations of 0.5–1%, and yeast extract at a concentration of 0.5%, stimulated the production of subtilisin-like serine proteinase by the recombinant strain. The study of the sporulation dynamics in this strain showed that the proteinase peaks at the 28th and 48th h of growth correspond, respectively, to the initial stage of sporulation and to the terminal stages of endospore formation (V–VII stages of sporulation). [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
235. Biosynthesis of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant Bacillus subtilis strain.
- Author
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Kirillova, Yu. M., Mikhailova, E. O., Balaban, N. P., Mardanova, A. M., Kayumov, A. R., Rudenskaya, G. N., Kostrov, S. V., and Sharipova, M. R.
- Subjects
- *
SUBTILISINS , *MICROBIAL enzymes , *SERINE proteinases , *BIOSYNTHESIS , *RECOMBINANT microorganisms , *MICROBIOLOGY - Abstract
The effect of certain nutrients on the growth and production of the Bacillus intermedius subtilisin-like serine proteinase by the recombinant strain Bacillus subtilis AJ73(pCS9) was studied. Glucose was found to inhibit the synthesis of proteinase in the early (28 h of growth) but not in the late stationary phase (48 h of growth). The inhibitory effect of the other mono-and disaccharides studied was less pronounced. Casamino acids added to the medium at concentrations of 0.1–1% as an additional carbon and nitrogen source stimulated enzyme biosynthesis. Individual amino acids (cysteine, asparagine, glutamine, tryptophan, histidine, and glutamate) also stimulated enzyme biosynthesis in the early stationary phase by 25–30%, whereas other amino acids (valine, leucine, alanine, and aspartate) were ineffective or even slightly inhibitory to enzyme production. The stimulatory effect of the first group of amino acids on the synthesis of proteinase in the late stationary phase was negligible. In contrast, the bivalent ions Ca2+, Mg2+, and Mn2+ stimulated biosynthesis of proteinase in the late stationary phase (by 20–60%) and not in the early stationary phase. The data indicate that there are differences in the biosyntheses of proteinase by the recombinant B. subtilis strain during the early and late periods of the stationary phases. [ABSTRACT FROM AUTHOR]
- Published
- 2006
- Full Text
- View/download PDF
236. The Regulation of Bacillus intermedius Glutamyl Endopeptidase Biosynthesis in the Recombinant Bacillus subtilis Strain AJ73 during Sporulation.
- Author
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Chastukhina, I. B., Sharipova, M. R., Gabdrakhmanova, L. A., Balaban, N. P., Safina, D. R., Kostrov, S. V., Rudenskaya, G. N., and Leshchinskaya, I. B.
- Subjects
- *
BACILLUS (Bacteria) , *BACTERIA , *BIOSYNTHESIS , *ENDOPEPTIDASES , *GENES , *GLUCOSE - Abstract
The growth of the recombinant Bacillus subtilis strain AJ73 carrying the Bacillus intermedius 3-19 glutamyl endopeptidase gene on a multicopy plasmid and the effect of some nutrients on the efficiency of extracellular glutamyl endopeptidase production in the stationary growth phase were studied. In this phase, the concentration of glutamyl endopeptidase in the culture liquid peaked at the 48th and 78th hours of cultivation and depended on the composition of the cultivation medium. Unlike the synthesis of glutamyl endopeptidase in the trophophase (i.e., during vegetative growth), which was suppressed by glucose, the synthesis of this enzyme during sporulation was resistant to glucose present in the cultivation medium. A multifactorial experimental design allowed optimal proportions between the concentrations of major nutrients (peptone and inorganic phosphate) to be determined. Inorganic phosphate and ammonium ions augmented the production of glutamyl endopeptidase by 30–150%, and complex organic substrates, such as casein and gelatin, enhanced the production of glutamyl endopeptidase by 50–100%. During sporulation, the production of glutamyl endopeptidase was stimulated by some bivalent cations (Ca2+, Mg2+, and Co2+) and inhibited by others (Zn2+, Fe2+, and Cu2+). The inference is drawn that the regulatory mechanisms of glutamyl endopeptidase synthesis during vegetative growth and sporulation are different. [ABSTRACT FROM AUTHOR]
- Published
- 2004
- Full Text
- View/download PDF
237. Isolation and Characterization of Glutamyl Endopeptidase 2 from Bacillus intermedius 3-19.
- Author
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Balaban, N. P., Mardanova, A. M., Sharipova, M. R., Gabdrakhmanova, L. A., Sokolova, E. A., Garusov, A. V., Milgotina, E. I., Rudenskaya, G. N., and Leshchinskaya, I. B.
- Subjects
- *
ENDOPEPTIDASES , *CHROMATOGRAPHIC analysis , *CELLULOSE , *HYDROLYSIS , *ENZYMES , *INSULIN - Abstract
The culture filtrate of Bacillus intermedius 3-19 was used for isolation by chromatography on CM-cellulose and Mono S columns of a proteinase that is secreted during the late stages of growth. The enzyme is irreversibly inhibited by the inhibitor of serine proteinases diisopropyl fluorophosphate, has two pH optima (7.2 and 9.5) for casein hydrolysis and one at pH 8.5 for Z-Glu-pNA hydrolysis. The molecular weight of the enzyme is 26.5 kD. The Km for Z-Glu-pNA hydrolysis is 0.5 mM. The temperature and pH dependences of the stability of the proteinase were studied. The enzyme was identified as glutamyl endopeptidase 2. The N-terminal sequence (10 residues) and amino acid composition of the enzyme were determined. The enzyme hydrolyzes Glu4–Gln5, Glu17–Asp18, and Cys11–Ser12 bonds in the oxidized A-chain of insulin and Glu13–Ala14, Glu21–Arg22, Cys7–Gly8, and Cys19–Gly20 bonds in the oxidized B-chain of insulin. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
238. Membrane-Bound Forms of Serine Proteases in Bacillus intermedius.
- Author
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Sharipova, M. R., Mardanova, A. M., Balaban, N. P., Gabdrakhmanova, L. A., Shilova, M. A., Chastukhina, I. B., Rudenskaya, G. N., and Leshchinskaya, I. B.
- Subjects
- *
SERINE proteinases , *PROTEINASES , *PROTEOLYTIC enzymes , *HYDROLASES , *BACILLUS (Bacteria) , *MICROBIOLOGY , *BIOLOGY - Abstract
Proteolytic proteins solubilized from the membrane of Bacillus intermedius were studied by electrophoresis. The content of membrane-bound proteinases was lower in cells grown in the presence of glucose. Proteinase enzymograms revealed four molecular forms of subtilisin and four molecular forms of glutamyl endopeptidase. The electrophoretic mobility of one of the molecular forms was similar to those of the mature extracellular proteinases. Chromatography of membrane proteins on a MonoS column yielded four protein fractions that caused hydrolysis of Z-Glu-pNA and four fractions that caused hydrolysis of Z-Ala-Ala-Leu-pNA, which is in agreement with the results of electrophoresis. The molecular forms of proteinases identified in the membrane may reflect various stages of biogenesis of the corresponding extracellular enzymes. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
239. Synthesis and Secretion of Proteinases by Bacillus intermedius in the Late Stages of Sporulation.
- Author
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Balaban, N. P., Sharipova, M. R., Gabdrakhmanova, L. A., Mardanova, A. M., Tokmakova, Yu. S., Sokolova, E. A., Rudenskaya, G. N., and Leshchinskaya, I. B.
- Subjects
- *
PROTEINASES , *BACILLUS (Bacteria) , *ENDOPEPTIDASES , *PROTEOLYTIC enzymes , *AMMONIUM ions , *MICROBIOLOGY - Abstract
In the late stages of sporulation, cells of Bacillus intermedius 3-19 secreted into the medium two proteinases, glutamyl endopeptidase and subtilisin, whose maximum activities were recorded in the 40th and 44th hours of growth, respectively. By estimating β-galactosidase activity as a marker of cytoplasmic membrane integrity, it was revealed that the accumulation of these proteinases in the medium was a result of their secretion and not of lysis of the cell envelope. Concentrations of peptone and inorganic phosphate ensuring the maximum production of the enzymes were established. Ammonium ions were shown to inhibit the production of proteinases by the mechanism of repression by nitrogen metabolites. [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
240. Genetic spectrum of sarcoglycanopathies in a cohort of Russian patients.
- Author
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Bulakh M, Polyakova D, Dadali E, Rudenskaya G, Sharkova I, Markova T, Murtazina A, Demina N, Kurbatov S, Nikitina N, Udalova V, Polyakov A, and Ryzhkova O
- Subjects
- Humans, Russia epidemiology, Male, Female, Retrospective Studies, Adult, Child, Adolescent, Child, Preschool, Young Adult, Cohort Studies, Middle Aged, Muscular Dystrophies, Limb-Girdle genetics, Muscular Dystrophies, Limb-Girdle epidemiology, Sarcoglycanopathies genetics, Sarcoglycanopathies epidemiology, Sarcoglycans genetics, Mutation
- Abstract
Sarcoglycanopathies encompass four distinct forms of limb-girdle muscular dystrophies (LGMD), denoted as LGMD R3-R6, arising from mutations within the SGCA, SGCB, SGCG, and SGCD genes. The global prevalence of sarcoglycanopathies is low, making it challenging to study these diseases. The principal objective of this study was to explore the spectrum of mutations in a cohort of Russian patients with sarcoglycanopathies and to ascertain the frequency of these conditions in the Russian Federation. We conducted a retrospective analysis of clinical and molecular genetic data from 49 Russian patients with sarcoglycan genes variants. The results indicated that variants in the SGCA gene were found in 71.4% of cases, with SGCB and SGCG genes each exhibiting variants in 12.2 % of patients. SGCD gene variants were detected in 4.1% of cases. Bi-allelic pathogenic and likely pathogenic variants were identified in 46 of the 49 cases of sarcoglycanopathies: LGMD R3 (n = 34), LGMD R4 (n = 4), LGMD R5 (n = 6), and LGMD R6 (n = 2). A total of 31 distinct variants were identified, comprising 25 previously reported and 6 novel variants. Two major variants, c.229C>T and c.271G>A, were detected within the SGCA, constituting 61.4% of all mutant alleles in Russian patients with LGMD R3. Both LGMD R6 cases were caused by the homozygous nonsense variant c.493C>T p.(Arg165Ter) in the SGCD gene. The incidence of sarcoglycanopathies in the Russian Federation was estimated to be at least 1 in 4,115,039, which is lower than the reported incidence in other populations., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier B.V. All rights reserved.)
- Published
- 2024
- Full Text
- View/download PDF
241. [A case of rare hereditary Siddiqi syndrome with novel neuropsychiatric signs].
- Author
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Rudenskaya GE, Bostanova FM, Medvedeva AS, Lotnik EE, Chausova PA, and Shchagina OA
- Subjects
- Adult, Humans, Male, Consanguinity, Exome Sequencing, Paraparesis, Spastic genetics, Pedigree, Syndrome, Hearing Loss, Sensorineural genetics, Hearing Loss, Sensorineural diagnosis, Neuropsychology, Dystonia genetics
- Abstract
A fifth world case of autosomal recessive Siddiqi syndrome (SIDDIS) related to FITM2 g ene is presented. In a consanguineous Lezgin (a Dagestan ethnicity) family, there were two affected brothers aged 28 yrs (proband, personally examined) and 32 yrs. Whole-exome sequencing followed by familial Sanger sequencing detected a novel FITM2 missence variant c.452A>G, p.Asp151Gly homozygous in both patients and heterozygous in parents and unaffected brother. SIDDIS typical features in the patients were physical and motor delay with neuropsychiatric regress, loss of speech and walking, early-onset progressive sensorineural deafness, cognitive deficiency, skin lesion. However, there was no dystonia, which is a characteristic SIDDIS feature, while at least the proband had spastic paraparesis not described in SIDDIS earlier. Another distinction was mental state: behavioral disorders in both patients, positive symptoms in the proband and severe cognitive impairment in the brother. The case expands our understanding of the clinical and molecular-genetic spectrum of SIDDIS.
- Published
- 2024
- Full Text
- View/download PDF
242. [Developmental and epileptic encephalopathy produced by the ATP1A2 mutation].
- Author
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Rudenskaya GE, Guseva DM, Shatokhina OL, Kadnikova VA, Filatova AY, Skoblov MY, and Ryzhkova OP
- Subjects
- Humans, Female, Child, Preschool, Epilepsy genetics, Epilepsy diagnosis, Infant, Magnetic Resonance Imaging, Spastic Paraplegia, Hereditary genetics, Spastic Paraplegia, Hereditary diagnosis, Mutation, Sodium-Potassium-Exchanging ATPase genetics, Mutation, Missense
- Abstract
A case of DEE98, a rare developmental and epileptic encephalopathy related to previously reported the de novo missense mutation p.Arg908Gln in the ATP1A2 gene, is described. A girl examined first time in 11 months had microcephaly, severe mental and motor delay, strabismus, spastic paraparesis and pachypolymicrogyria on brain MRI that is atypical for DEE98. Epilepsy with polymorphic seizures started at the age of 15 months. There was a remission lasting 9 months, after which seizures renewed. DEE98 was diagnosed at the age of 2 years 9 months by exome sequencing verified by trio Sanger sequencing. Another finding from high-throughput exome sequencing were two previously undescribed heterozygous variants of uncertain pathogenicity in the SPART gene, which causes autosomal recessive spastic paraplegia type 20 (SPG20); Sanger sequencing confirmed the trans position of the variants. The common clinical sign with typical SPG20 was early spastic paraparesis with contractures; other symptoms did not coincide. Considering the phenotypic diversity of SPG20 and the possibility of a combination of two independent diseases, we performed an additional study of the pathogenicity of SPART variants at the mRNA level: pathogenicity was not confirmed, and there were no grounds to diagnose SPG20.
- Published
- 2024
- Full Text
- View/download PDF
243. [Gerstmann-Sträussler disease: a familial case with common PRNP mutation and atypical features].
- Author
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Rudenskaya GE, Konovalov FA, Illarioshkin SN, and Shchagina OA
- Subjects
- Humans, Male, Female, Adult, Prion Proteins genetics, Mutation, Gerstmann-Straussler-Scheinker Disease diagnosis, Gerstmann-Straussler-Scheinker Disease genetics, Gerstmann-Straussler-Scheinker Disease complications, Prions genetics, Cerebellar Ataxia
- Abstract
Gerstmann-Sträussler disease (GSD) is a very rare autosomal dominant late-onset neurodegenerative disorder related to prion protein gene PRNP . Mutation p.Pro102Leu produces about 80% of cases, which are often named GSD-102. DNA testing provides exact diagnosis. In the presented Russian family there were 3 patients: a female index case, age 32 years, her brother, age 37 years (age of onset in both is 27 years) and their deceased father (onset in 35 years, death in 44 years). GSD was not suspected until whole exome sequencing in the female detected PRNP mutation p.Pro102Leu confirmed in her and in the brother by Sanger sequencing. Atypical features of the case are: early onset in siblings, absence of mental and behavioral problems in the female and in the father and mild disturbances in the brother; epilepsy in the brother; atypical onset with transient signs in the brother. Other intrafamilial differences are prevailing spastic paraparesis in the female in contrast to predominant ataxia in the brother and dysarthria absence in the female. The case illustrates GSD-102 variability, complicating clinical diagnostics.
- Published
- 2023
- Full Text
- View/download PDF
244. [A case of spastic paraplegia with SPG4 and SPG3 associated mutations].
- Author
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Rudenskaya GE, Kuchina AS, Kadnikova VA, and Ryzhkova OP
- Subjects
- Adult, Aged, Female, Humans, Middle Aged, High-Throughput Nucleotide Sequencing, Mothers, Mutation, Spastin genetics, Male, Paraplegia diagnosis, Paraplegia genetics, Spastic Paraplegia, Hereditary diagnosis, Spastic Paraplegia, Hereditary genetics
- Abstract
A rare case of autosomal dominant spastic paraplegia in a 36-year-old female with two reported earlier mutations of most common spastic paraplegia forms: SPG4 (mutation p.Cys28Leufs*20 in SPAST gene) and SPG3 (mutation p.Val405Met in ATL1 gene) is presented. The mutations detected by massively parallel sequencing (MPS) panel were inherited from affected mother and clinically unaffected father, respectively. The proband, her 61-year-old mother and deceased grandfather had 'uncomplicated' paraplegia with onset in 4
th decade. The 67-year-old father had no even minimal subclinical signs of the disease and no affected relatives, detection of his low-penetrating ATL1 mutation was unexpected. MPS methods are the most informative for identifying a patient and/or family members with a combined hereditary neurological pathology, especially a combination of similar forms of heterogeneous groups, such as spastic paraplegia.- Published
- 2023
- Full Text
- View/download PDF
245. [Early-onset familial Alzheimer's disease with spastic paraparesis associated with PSEN1 gene].
- Author
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Rudenskaya GE, Petukhova MS, Zabnenkova VV, Cherevatova TB, and Ryzhkova OP
- Subjects
- Adult, Female, Humans, Male, Age of Onset, Mothers, Mutation, Pedigree, Presenilin-1 genetics, Young Adult, Alzheimer Disease diagnosis, Alzheimer Disease genetics, Alzheimer Disease complications, Paraparesis, Spastic diagnosis, Paraparesis, Spastic genetics, Paraparesis, Spastic complications
- Abstract
A familial case of a rare autosomal dominant Alzheimer's disease (AD), related to PSEN1 gene (AD3, OMIM 607822), differing from common multifactorial form by earlier onset and, in part of cases, by accompanying neurological signs, spastic paraparesis particularly, is presented. The first sign in a female proband and in her son was paraparesis manifested at the age of 29 and 21 years, respectively. Cognitive disturbances developed soon; the former diagnosis was hereditary spastic paraplegia with cognitive impairment, In the proband examined in 2008 at 33 years old the diagnosis was not established. In the son examined in 2022 at 27 years old whole-exome sequencing detected a novel PSEN1 missense mutation p.Thr421Ala. The mutation was confirmed by Sanger sequencing in him, found out in the proband (who was severely disabled by that time) and excluded in her unaffected mother. Except for different age of onset, AD3 in two patients was similar, though in whole it is variable, also in relatives. The variability and rareness of the disease hampers clinical diagnostics. Massive parallel sequencing is a most reliable diagnostic method.
- Published
- 2023
- Full Text
- View/download PDF
246. Genetic and Clinical Spectrum of GNE Myopathy in Russia.
- Author
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Murtazina A, Nikitin S, Rudenskaya G, Sharkova I, Borovikov A, Sparber P, Shchagina O, Chukhrova A, Ryzhkova O, Shatokhina O, Orlova A, Udalova V, Kanivets I, Korostelev S, Polyakov A, Dadali E, and Kutsev S
- Subjects
- Humans, Female, Multienzyme Complexes genetics, Muscle, Skeletal pathology, Atrophy pathology, Distal Myopathies genetics, Distal Myopathies pathology
- Abstract
GNE myopathy (GNEM) is a rare hereditary disease, but at the same time, it is the most common distal myopathy in several countries due to a founder effect of some pathogenic variants in the GNE gene. We collected the largest cohort of patients with GNEM from Russia and analyzed their mutational spectrum and clinical data. In our cohort, 10 novel variants were found, including 2 frameshift variants and 2 large deletions. One novel missense variant c.169_170delGCinsTT (p.(Ala57Phe)) was detected in 4 families in a homozygous state and in 3 unrelated patients in a compound heterozygous state. It was the second most frequent variant in our cohort. All families with this novel frequent variant were non-consanguineous and originated from the 3 neighboring areas in the European part of Russia. The clinical picture of the patients carrying this novel variant was typical, but the severity of clinical manifestation differed significantly. In our study, we reported two atypical cases expanding the phenotypic spectrum of GNEM. One female patient had severe quadriceps atrophy, hand joint contractures, keloid scars, and non-classical pattern on leg muscle magnetic resonance imaging, which was more similar to atypical collagenopathy rather than GNEM. Another patient initially had been observed with spinal muscular atrophy due to asymmetric atrophy of hand muscles and results of electromyography. The peculiar pattern of muscle involvement on magnetic resonance imaging consisted of pronounced changes in the posterior thigh muscle group with relatively spared muscles of the lower legs, apart from the soleus muscles. Different variants in the GNE gene were found in both atypical cases. Thus, our data expand the mutational and clinical spectrum of GNEM.
- Published
- 2022
- Full Text
- View/download PDF
247. Complex Diagnostics of Non-Specific Intellectual Developmental Disorder.
- Author
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Levchenko O, Dadali E, Bessonova L, Demina N, Rudenskaya G, Matyushchenko G, Markova T, Anisimova I, Semenova N, Shchagina O, Ryzhkova O, Zinchenko R, Galkina V, Voinova V, Nagieva S, and Lavrov A
- Subjects
- Child, Chromosome Aberrations, Developmental Disabilities diagnosis, Developmental Disabilities genetics, Humans, Microarray Analysis, Exome Sequencing, Intellectual Disability diagnosis, Intellectual Disability genetics
- Abstract
Intellectual development disorder (IDD) is characterized by a general deficit in intellectual and adaptive functioning. In recent years, there has been a growing interest in studying the genetic structure of IDD. Of particular difficulty are patients with non-specific IDD, for whom it is impossible to establish a clinical diagnosis without complex genetic diagnostics. We examined 198 patients with non-specific IDD from 171 families using whole-exome sequencing and chromosome microarray analysis. Hereditary forms of IDD account for at least 35.7% of non-specific IDD, of which 26.9% are monogenic forms. Variants in the genes associated with the BAF (SWI/SNF) complex were the most frequently identified. We were unable to identify phenotypic features that would allow differential diagnosis of monogenic and microstructural chromosomal rearrangements in non-specific IDD at the stage of clinical examination, but due to its higher efficiency, exome sequencing should be the diagnostic method of the highest priority study after the standard examination of patients with NIDD in Russia.
- Published
- 2022
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248. [Atypical spastic paraplegia type 4 due to p.Arg499His mutation in SPAST gene].
- Author
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Rudenskaya GE, Shestopalova EA, Kadnikova VA, and Shchagina OA
- Subjects
- Child, Preschool, Humans, Mutation, Phenotype, Spastic Paraplegia, Hereditary diagnosis, Spastic Paraplegia, Hereditary genetics, Spastin genetics
- Abstract
A case of spastic paraplegia type 4 (SPG4) due to SPAST p.Arg499His mutation de novo in a child, aged 2 years 8 months, is presented. The differences of this first Russian case with the mutation and of a number of reported cases from typical SPG4 are very early onset, severe disabling spasticity and additional signs, cognitive disturbances in particular; SPAST mutations de novo are also infrequent. Specific patterns point to the relationship between genotype and phenotype. Methods of exome sequencing are particularly informative in atypical cases difficult for clinical diagnostics.
- Published
- 2022
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249. A Mosaic Mutation in the LAMA2 Gene in a Case of Merosin-deficient Congenital Muscular Dystrophy.
- Author
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Chausova PA, Ryzhkova OP, Rudenskaya GE, Chernykh VB, Shchagina OA, and Polyakov AV
- Abstract
Merosine deficient congenital muscular dystrophy is one of the most common forms of congenital muscular dystrophy. This disease is caused by a primary deficiency or a functionally inactive form of the protein merosin in muscle tissue. The type of inheritance of this disease is autosomal recessive. De novo variants with this type of inheritance are rare, and it is quite possible that the de novo variant may hide a mosaic form in the parent of an affected child. We present a birth family with two affected children who inherited a previously undescribed pathogenic variant c.1755del from their mother and a previously described pathogenic variant c.9253C > T in the LAMA2 gene from their mosaic father. LAMA2 gene mutation analysis was performed by mass parallel sequencing and direct sequencing of genomic DNAs., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Chausova, Ryzhkova, Rudenskaya, Chernykh, Shchagina and Polyakov.)
- Published
- 2021
- Full Text
- View/download PDF
250. Retrospective analysis of 17 patients with mitochondrial membrane protein-associated neurodegeneration diagnosed in Russia.
- Author
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Sparber P, Krylova T, Repina S, Demina N, Rudenskaya G, Sharkova I, Sharkov A, Kadyshev V, Kanivets I, Korostelev S, Pomerantseva E, Kaimonov V, Mikhailova S, Zakharova E, and Skoblov M
- Subjects
- Adolescent, Adult, Child, Female, Globus Pallidus diagnostic imaging, Humans, Magnetic Resonance Imaging, Retrospective Studies, Russia epidemiology, Substantia Nigra diagnostic imaging, Exome Sequencing, Globus Pallidus pathology, Iron Metabolism Disorders epidemiology, Iron Metabolism Disorders genetics, Iron Metabolism Disorders pathology, Iron Metabolism Disorders physiopathology, Membrane Proteins, Mitochondrial Membranes, Mitochondrial Proteins, Neuroaxonal Dystrophies epidemiology, Neuroaxonal Dystrophies genetics, Neuroaxonal Dystrophies pathology, Neuroaxonal Dystrophies physiopathology, Substantia Nigra pathology
- Abstract
Introduction: Mitochondrial membrane protein-associated neurodegeneration (MPAN) is a rare neurological syndrome caused by pathogenic variants in the C19orf12 and is characterized by iron deposition in the basal ganglia and substantia nigra. Only a limited number of cohort studies were published to date and the prevalence of MPAN remains uncertain., Methods: Recruited subjects with MPAN in Russia were diagnosed by whole-exome sequencing or Sanger sequencing of the C19orf12 gene. Data of over 14000 whole exome sequencing analyses was used to calculate the estimated disease frequency. RNA analysis was performed by RT-PCR. QSVanalyzer software was used to quantify the allelic disbalance., Results: We describe the clinical and molecular characterizations of 17 patients with MPAN. DNA analysis detected three previously undescribed pathogenic/likely pathogenic variants in the C19orf12 gene. The estimated disease frequency was calculated to be 1:619150. We describe unusual clinical observations in several cases. One patient showed severe neurogenic muscle weakness along with a lack of marked spasticity or optic nerve atrophy. In another mild clinical case with the NM_001031726.3:c.204_214del (p.(Gly69Argfs*10)) variant in a heterozygous state, a marked allelic disbalance was observed on the RNA level with reduced expression level of the wild-type allele. Thus, this case became the first one of a possible regulatory variant causing MPAN., Conclusion: We reported a detailed clinical and molecular characterization of the third-largest MPAN cohort. We expanded the mutational and clinical spectrum of MPAN. Moreover, we calculated the estimated MPAN frequency in the Russian population for the first time., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
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