675 results on '"Reecy, James"'
Search Results
202. 1000 Bull Genomes Consortium Project
- Author
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Hayes, Benjamin, Fries, Ruedi, Lund, Mogens Sando, Boichard, Didier, Stothard, Paul, Veerkamp, Roel F., Van Tassell, Curt, Anderson, Charlotte, Hulsegge, Ina, Guldbrandtsen, Bernt, Rocha, Dominique, Hinirichs, Dirk, Bagnato, Alessandro, Georges, Michel, Spelman, Richard, Reecy, James, Archibald, Alan L., Goddard, Mike, Gredler, Birgit, Lehrstuhl fuer Tierzucht, Technische Universitaet Muenchen, Faculty of Science and Technology, Department of Genetics and Biotechnology, Aarhus University [Aarhus], Génétique Animale et Biologie Intégrative (GABI), AgroParisTech-Institut National de la Recherche Agronomique (INRA), Department of Agricultural, Food and Nutritional Science, University of Alberta, Animal Breeding and Genomics Centre, Wageningen University and Research Centre [Wageningen] (WUR), Bovine Functional Genomics Laboratory, Agricultural Research Service, United States Department of Agriculture, Biosciences Research Division, Department of Primary Industries, Victoria University [Melbourne], Institute of Animal Breeding and Husbandry, Christian-Albrechts-Universität zu Kiel (CAU), Unit of Animal Genomics, Université de Liège, The Roslin Institute, ANR-Apisgene Cartoseq, Institut National de la Recherche Agronomique (INRA)-AgroParisTech, and Wageningen University and Research [Wageningen] (WUR)
- Subjects
séquençage ,bovin ,sélection génomique ,[SDV.SA]Life Sciences [q-bio]/Agricultural sciences - Abstract
absent
- Published
- 2012
203. In silico prediction of microRNAs targeting alleles of the Swine Leukocyte Antigen complex
- Author
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Endale Ahanda, Marie-Laure, Hu, Zhi-Liang, Estelle Fabrellas, Jordi, Fritz, Eric R., Rogel Gaillard, Claire, Reecy, James M., Giuffra, Elisabetta, Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, and Iowa State University (ISU)
- Subjects
[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2011
204. microRNA target prediction and 3'UTR polymorphism in swine
- Author
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Endale Ahanda, Marie-Laure, Hu, Zhi-Liang, Estelle, Jordi, Fritz, Eric R., Gaillard, Claire, Reecy, James, Giuffra, Elisabetta, Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, and AgroParisTech-Institut National de la Recherche Agronomique (INRA)
- Subjects
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences - Abstract
absent
- Published
- 2011
205. Community annotation of immunity-related genes in the pig genome
- Author
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Loveland, Jane, Uenishi, Hirohide, Dawson, Harry, Lunney, Joan, Sang, Yongming, Zhao, Shuhong, Giuffra, Elisabetta, Botti, Sara, Reecy, James, Harrow, Jennifer, Freeman, Tom, Archibald, Alan L., Murtaugh, Michael, Hume, David, Morozumi, Takeya, Shinkai, Hiroki, Bed'Hom, Bertrand, Blecha, Frank, Zhang, Guolong, Mann, Katherine, Zhang, Jie, Chen, Celine, Hu, Zhi-Liang, Cheng, Ryan, Huang, Tinghua, Rodriguez, Yasiara, Anselmo, Anna, Badaoui, Bouabid, Schwartz, John, Kapetanovic, Ronan, Beraldi, Dario, Tuggle, Christopher K., and Rogel-Gaillard, Claire
- Published
- 2011
206. Genetic Improvement of Production and Adaptive Traits in Livestock
- Author
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Reecy, James M, primary
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- 2016
- Full Text
- View/download PDF
207. Int J Biol Sci
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Dodson, Michael V., Hausman, Gary J., Guan, Leluo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., Jiang, Zhihua, and Animal and Poultry Sciences
- Subjects
adipose depots ,Adipogenesis ,Swine ,adipocytes ,lipid metabolism ,Models, Animal ,Meat animals ,Animals ,Cattle - Abstract
Meat animals are unique as experimental models for both lipid metabolism and adipocyte studies because of their direct economic value for animal production. This paper discusses the principles that regulate adipogenesis in major meat animals (beef cattle, dairy cattle, and pigs), the definition of adipose depot-specific regulation of lipid metabolism or adipogenesis, and introduces the potential value of these animals as models for metabolic research including mammary biology and the ontogeny of fatty livers. Published version
- Published
- 2010
208. Developmental progress and current status of the Animal QTLdb
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Hu, Zhi-Liang, primary, Park, Carissa A., additional, and Reecy, James M., additional
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- 2015
- Full Text
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209. Fast Epistasis Detection in Large-Scale GWAS for Intel Xeon Phi Clusters
- Author
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Luecke, Glenn R., primary, Weeks, Nathan T., additional, Groth, Brandon M., additional, Kraeva, Marina, additional, Ma, Li, additional, Kramer, Luke M., additional, Koltes, James E., additional, and Reecy, James M., additional
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- 2015
- Full Text
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210. Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection
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Schroyen, Martine, primary, Steibel, Juan P., additional, Koltes, James E., additional, Choi, Igseo, additional, Raney, Nancy E., additional, Eisley, Christopher, additional, Fritz-Waters, Eric, additional, Reecy, James M., additional, Dekkers, Jack C. M., additional, Rowland, Robert R. R., additional, Lunney, Joan K., additional, Ernst, Catherine W., additional, and Tuggle, Christopher K., additional
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- 2015
- Full Text
- View/download PDF
211. Putative Regulatory Factors Associated with Intramuscular Fat Content
- Author
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Cesar, Aline S. M., primary, Regitano, Luciana C. A., additional, Koltes, James E., additional, Fritz-Waters, Eric R., additional, Lanna, Dante P. D., additional, Gasparin, Gustavo, additional, Mourão, Gerson B., additional, Oliveira, Priscila S. N., additional, Reecy, James M., additional, and Coutinho, Luiz L., additional
- Published
- 2015
- Full Text
- View/download PDF
212. Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
- Author
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Koltes, James E., primary, Fritz-Waters, Eric, additional, Eisley, Chris J., additional, Choi, Igseo, additional, Bao, Hua, additional, Kommadath, Arun, additional, Serão, Nick V. L., additional, Boddicker, Nicholas J., additional, Abrams, Sam M., additional, Schroyen, Martine, additional, Loyd, Hyelee, additional, Tuggle, Chris K., additional, Plastow, Graham S., additional, Guan, Leluo, additional, Stothard, Paul, additional, Lunney, Joan K., additional, Liu, Peng, additional, Carpenter, Susan, additional, Rowland, Robert R. R., additional, Dekkers, Jack C. M., additional, and Reecy, James M., additional
- Published
- 2015
- Full Text
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213. Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2
- Author
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Koltes, James E, primary, Kumar, Dinesh, additional, Kataria, Ranjit S, additional, Cooper, Vickie, additional, and Reecy, James M, additional
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- 2015
- Full Text
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214. Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle
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Tizioto, Polyana C, primary, Taylor, Jeremy F, additional, Decker, Jared E, additional, Gromboni, Caio F, additional, Mudadu, Mauricio A, additional, Schnabel, Robert D, additional, Coutinho, Luiz L, additional, Mourão, Gerson B, additional, Oliveira, Priscila SN, additional, Souza, Marcela M, additional, Reecy, James M, additional, Nassu, Renata T, additional, Bressani, Flavia A, additional, Tholon, Patricia, additional, Sonstegard, Tad S, additional, Alencar, Mauricio M, additional, Tullio, Rymer R, additional, Nogueira, Ana RA, additional, and Regitano, Luciana CA, additional
- Published
- 2015
- Full Text
- View/download PDF
215. Gene Co-Expression Network Analysis Provides Novel Insights into Myostatin Regulation at Three Different Mouse Developmental Timepoints
- Author
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Yang, Xuerong, primary, Koltes, James E., additional, Park, Carissa A., additional, Chen, Daiwen, additional, and Reecy, James M., additional
- Published
- 2015
- Full Text
- View/download PDF
216. RAPTR-SV: a hybrid method for the detection of structural variants
- Author
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Bickhart, Derek M., primary, Hutchison, Jana L., additional, Xu, Lingyang, additional, Schnabel, Robert D., additional, Taylor, Jeremy F., additional, Reecy, James M., additional, Schroeder, Steven, additional, Van Tassell, Curt P., additional, Sonstegard, Tad S., additional, and Liu, George E., additional
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- 2015
- Full Text
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217. Skeletal muscle stem cells from animals I. Basic Cell Biology
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Dodson, Michael V., Hausman, Gary J., Guan, LeLuo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Roberts P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., and Jiang, Zhihua
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- 2010
- Full Text
- View/download PDF
218. Lipid metabolism, adipocyte depot physiology and utilization of meat animals as experimental models for metabolic research
- Author
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Dodson, Michael V., Hausman, Gary J., Guan, LeLuo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., and Jiang, Zhihua
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- 2010
- Full Text
- View/download PDF
219. Global perspectives on animal trait ontology
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Reecy, James M., Park, Carissa, Hu, Z.L., Hulsegge, I., Van Der Steen, H., Hocquette, Jean-François, Iowa State University (ISU), Wageningen University and Research Centre (WUR), Unité de Recherches sur les Herbivores (URH), Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration
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[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,[INFO]Computer Science [cs] ,[SHS] Humanities and Social Sciences ,[INFO] Computer Science [cs] ,ComputingMilieux_MISCELLANEOUS ,GENOMIQUE ,[SHS]Humanities and Social Sciences - Abstract
International audience
- Published
- 2009
220. Muscle molecular profiles in myostatin-null mice
- Author
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Chelh, Ilham, Meunier, Bruno, Picard, Brigitte, Reecy, James, Hocquette, Jean-François, Cassar-Malek, Isabelle, Unité de Recherches sur les Herbivores (URH), Institut National de la Recherche Agronomique (INRA), Iowa State University (ISU), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,[INFO]Computer Science [cs] ,[INFO] Computer Science [cs] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2008
221. Muscle molecular profiles in myostatin-null mice
- Author
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Chelh, Ilham, Picard, Brigitte, Reecy, James, Hocquette, Jean-François, Cassar-Malek, Isabelle, Unité de Recherches sur les Herbivores (URH), Institut National de la Recherche Agronomique (INRA), Iowa State University (ISU), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,[INFO]Computer Science [cs] ,[INFO] Computer Science [cs] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2007
222. Identification of genome-wide SNP-SNP interactions associated with important traits in chicken.
- Author
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Hui Zhang, Jia-Qiang Yu, Li-Li Yang, Kramer, Luke M., Xin-Yang Zhang, Wei Na, Reecy, James M., and Hui Li
- Subjects
SINGLE nucleotide polymorphisms ,GENETIC polymorphisms ,PHENOTYPES ,PERSONALITY ,CHEMOKINE genetics ,CYTOKINE genetics - Abstract
Background: In addition to additive genetic effects, epistatic interactions can play key roles in the control of phenotypic variation of traits of interest. In the current study, 475 male birds from lean and fat chicken lines were utilized as a resource population to detect significant epistatic effects associated with growth and carcass traits. Results: A total of 421 significant epistatic effects were associated with testis weight (TeW), from which 11 sub-networks (Sub-network1 to Sub-network11) were constructed. In Sub-network1, which was the biggest network, there was an interaction between GGA21 and GGAZ. Three genes on GGA21 (SDHB, PARK7 and VAMP3) and nine genes (AGTPBP1, CAMK4, CDC14B, FANCC, FBP1, GNAQ, PTCH1, ROR2 and STARD4) on GGAZ that might be potentially important candidate genes for testis growth and development were detected based on the annotated gene function. In Sub-network2, there was a SNP on GGA19 that interacted with 8 SNPs located on GGA10. The SNP (Gga_rs15834332) on GGA19 was located between C-C motif chemokine ligand 5 (CCL5) and MIR142. There were 32 Refgenes on GGA10, including TCF12 which is predicted to be a target gene of miR-142-5p. We hypothesize that miR-142-5p and TCF12 may interact with one another to regulate testis growth and development. Two genes (CDH12 and WNT8A) in the same cadherin signaling pathway were implicated as potentially important genes in the control of metatarsus circumference (MeC). There were no significant epistatic effects identified for the other carcass and growth traits, e.g. heart weight (HW), liver weight (LW), spleen weight (SW), muscular and glandular stomach weight (MGSW), carcass weight (CW), body weight (BW1, BW3, BW5, BW7), chest width (ChWi), metatarsus length (MeL). Conclusions: The results of the current study are helpful to better understand the genetic basis of carcass and growth traits, especially for testis growth and development in broilers. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
223. cDNA arrays for gene expression profiling in cattle
- Author
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Hocquette, Jean-François, Lehnert, Sigrid, Reecy, James, Cassar-Malek, Isabelle, Martin, Patrice, Unité de Recherches sur les Herbivores (URH), Institut National de la Recherche Agronomique (INRA), Livestock Industries, Iowa State University (ISU), Unité de recherche génomique et physiologie de la lactation (GPL), and ProdInra, Migration
- Subjects
[SDV] Life Sciences [q-bio] ,GENE EXPRESSION ,[SDV]Life Sciences [q-bio] ,CATTLE ,ARRAY ,[INFO]Computer Science [cs] ,[INFO] Computer Science [cs] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2005
224. Evolution of hypothalamus-pituitary growth axis among fish, amphibian, birds and mammals
- Author
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Moaeen-Ud-Din, M., primary, Bilal, G., additional, and Reecy, James, additional
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- 2015
- Full Text
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225. Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
- Author
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Decker, Jared E., McKay, Stephanie D., Rolf, Megan M., Kim, JaeWoo, Molina Alcala, Antonio, Sonstegard, Tad S., Hanotte, Olivier, Götherström, Anders, Seabury, Christopher M., Praharani, Lisa, Babar, Masroor Ellahi, de Almeida Regitano, Luciana Correia, Yildiz, Mehmet Ali, Heaton, Michael P., Liu, Wan-Sheng, Lei, Chu-Zhao, Reecy, James M., Saif-Ur-Rehman, Muhammad, Schnabel, Robert D., Taylor, Jeremy F., Decker, Jared E., McKay, Stephanie D., Rolf, Megan M., Kim, JaeWoo, Molina Alcala, Antonio, Sonstegard, Tad S., Hanotte, Olivier, Götherström, Anders, Seabury, Christopher M., Praharani, Lisa, Babar, Masroor Ellahi, de Almeida Regitano, Luciana Correia, Yildiz, Mehmet Ali, Heaton, Michael P., Liu, Wan-Sheng, Lei, Chu-Zhao, Reecy, James M., Saif-Ur-Rehman, Muhammad, Schnabel, Robert D., and Taylor, Jeremy F.
- Abstract
The domestication and development of cattle has considerably impacted human societies, but the histories of cattle breeds and populations have been poorly understood especially for African, Asian, and American breeds. Using genotypes from 43,043 autosomal single nucleotide polymorphism markers scored in 1,543 animals, we evaluate the population structure of 134 domesticated bovid breeds. Regardless of the analytical method or sample subset, the three major groups of Asian indicine, Eurasian taurine, and African taurine were consistently observed. Patterns of geographic dispersal resulting from co-migration with humans and exportation are recognizable in phylogenetic networks. All analytical methods reveal patterns of hybridization which occurred after divergence. Using 19 breeds, we map the cline of indicine introgression into Africa. We infer that African taurine possess a large portion of wild African auroch ancestry, causing their divergence from Eurasian taurine. We detect exportation patterns in Asia and identify a cline of Eurasian taurine/indicine hybridization in Asia. We also identify the influence of species other than Bos taurus taurus and B. t. indicus in the formation of Asian breeds. We detect the pronounced influence of Shorthorn cattle in the formation of European breeds. Iberian and Italian cattle possess introgression from African taurine. American Criollo cattle originate from Iberia, and not directly from Africa with African ancestry inherited via Iberian ancestors. Indicine introgression into American cattle occurred in the Americas, and not Europe. We argue that cattle migration, movement and trading followed by admixture have been important forces in shaping modern bovine genomic variation.
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- 2014
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226. Bos taurus strain:dairy beef (cattle): 1000 Bull Genomes Run 2, Bovine Whole Genome Sequence
- Author
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Bouwman, A.C., Daetwyler, H.D., Chamberlain, Amanda J., Ponce, Carla Hurtado, Sargolzaei, Mehdi, Schenkel, Flavio S., Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus F., Bowman, Phil J., Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens S., Servin, Bertrand, Garrick, Dorian J., Reecy, James M., Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse L., Schnabel, Robert D., Taylor, Jeremy F., Vinkhuyzen, Anna A.E., Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik, Gredler, Birgit, Hozé, Chris, Boussaha, Mekki, Sanchez, Marie Pierre, Rocha, Dominique, Capitan, Aurelien, Tribout, Thierry, Barbat, Anne, Croiseau, Pascal, Drögemüller, Cord, Jagannathan, Vidhya, Vander Jagt, Christy, Crowley, John J., Bieber, Anna, Purfield, Deirdre C., Berry, Donagh P., Emmerling, Reiner, Götz, Kay Uwe, Frischknecht, Mirjam, Russ, Ingolf, Sölkner, Johann, van Tassell, Curtis P., Fries, Ruedi, Stothard, Paul, Veerkamp, R.F., Boichard, Didier, Goddard, Mike E., Hayes, Ben J., Bouwman, A.C., Daetwyler, H.D., Chamberlain, Amanda J., Ponce, Carla Hurtado, Sargolzaei, Mehdi, Schenkel, Flavio S., Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus F., Bowman, Phil J., Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens S., Servin, Bertrand, Garrick, Dorian J., Reecy, James M., Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse L., Schnabel, Robert D., Taylor, Jeremy F., Vinkhuyzen, Anna A.E., Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik, Gredler, Birgit, Hozé, Chris, Boussaha, Mekki, Sanchez, Marie Pierre, Rocha, Dominique, Capitan, Aurelien, Tribout, Thierry, Barbat, Anne, Croiseau, Pascal, Drögemüller, Cord, Jagannathan, Vidhya, Vander Jagt, Christy, Crowley, John J., Bieber, Anna, Purfield, Deirdre C., Berry, Donagh P., Emmerling, Reiner, Götz, Kay Uwe, Frischknecht, Mirjam, Russ, Ingolf, Sölkner, Johann, van Tassell, Curtis P., Fries, Ruedi, Stothard, Paul, Veerkamp, R.F., Boichard, Didier, Goddard, Mike E., and Hayes, Ben J.
- Abstract
Whole genome sequence data (BAM format) of 234 bovine individuals aligned to UMD3.1. The aim of the study was to identify genetic variants (SNPs and indels) for downstream analysis such as imputation, GWAS, and detection of lethal recessives. Additional sequences for later 1000 bull genomes runs can be found at partners individual projects including PRJEB9343, PRJNA176557, PRJEB18113, PRNJA343262, PRJNA324822, PRJNA324270, PRJNA277147, PRJEB5462.
- Published
- 2014
227. Polymorphisms in lipogenic genes and milk fatty acid composition in Holstein dairy cattle
- Author
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Nafikov, Rafael A., primary, Schoonmaker, Jon P., additional, Korn, Kathleen T., additional, Noack, Kristin, additional, Garrick, Dorian J., additional, Koehler, Kenneth J., additional, Minick-Bormann, Jennifer, additional, Reecy, James M., additional, Spurlock, Diane E., additional, and Beitz, Donald C., additional
- Published
- 2014
- Full Text
- View/download PDF
228. Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples
- Author
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Choi, Igseo, primary, Bao, Hua, additional, Kommadath, Arun, additional, Hosseini, Afshin, additional, Sun, Xu, additional, Meng, Yan, additional, Stothard, Paul, additional, Plastow, Graham S, additional, Tuggle, Christopher K, additional, Reecy, James M, additional, Fritz-Waters, Eric, additional, Abrams, Samuel M, additional, Lunney, Joan K, additional, and Guan, Le Luo, additional
- Published
- 2014
- Full Text
- View/download PDF
229. Identification of genomic regions associated with feed efficiency in Nelore cattle
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de Oliveira, Priscila SN, primary, Cesar, Aline SM, additional, do Nascimento, Michele L, additional, Chaves, Amália S, additional, Tizioto, Polyana C, additional, Tullio, Rymer R, additional, Lanna, Dante PD, additional, Rosa, Antonio N, additional, Sonstegard, Tad S, additional, Mourao, Gerson B, additional, Reecy, James M, additional, Garrick, Dorian J, additional, Mudadu, Maurício A, additional, Coutinho, Luiz L, additional, and Regitano, Luciana CA, additional
- Published
- 2014
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230. Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors
- Author
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Koesterke, Lars, primary, Koltes, James E., additional, Weeks, Nathan T., additional, Milfeld, Kent, additional, Vaughn, Matthew W., additional, Reecy, James M., additional, and Stanzione, Dan, additional
- Published
- 2014
- Full Text
- View/download PDF
231. Worldwide Patterns of Ancestry, Divergence, and Admixture in Domesticated Cattle
- Author
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Decker, Jared E., primary, McKay, Stephanie D., additional, Rolf, Megan M., additional, Kim, JaeWoo, additional, Molina Alcalá, Antonio, additional, Sonstegard, Tad S., additional, Hanotte, Olivier, additional, Götherström, Anders, additional, Seabury, Christopher M., additional, Praharani, Lisa, additional, Babar, Masroor Ellahi, additional, Correia de Almeida Regitano, Luciana, additional, Yildiz, Mehmet Ali, additional, Heaton, Michael P., additional, Liu, Wan-Sheng, additional, Lei, Chu-Zhao, additional, Reecy, James M., additional, Saif-Ur-Rehman, Muhammad, additional, Schnabel, Robert D., additional, and Taylor, Jeremy F., additional
- Published
- 2014
- Full Text
- View/download PDF
232. Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle
- Author
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Cesar, Aline SM, primary, Regitano, Luciana CA, additional, Mourão, Gerson B, additional, Tullio, Rymer R, additional, Lanna, Dante PD, additional, Nassu, Renata T, additional, Mudado, Maurício A, additional, Oliveira, Priscila SN, additional, do Nascimento, Michele L, additional, Chaves, Amália S, additional, Alencar, Maurício M, additional, Sonstegard, Tad S, additional, Garrick, Dorian J, additional, Reecy, James M, additional, and Coutinho, Luiz L, additional
- Published
- 2014
- Full Text
- View/download PDF
233. Genome-wide association and genomic prediction for host response to porcine reproductive and respiratory syndrome virus infection
- Author
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Boddicker, Nicholas J, primary, Bjorkquist, Angelica, additional, Rowland, Raymond RR, additional, Lunney, Joan K, additional, Reecy, James M, additional, and Dekkers, Jack CM, additional
- Published
- 2014
- Full Text
- View/download PDF
234. Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals
- Author
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Bouwman, Aniek, Daetwyler, Hans, Chamberlain, Amanda, Ponce, Carla, Sargolzaei, Mehdi, Schenkel, Flavio, Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus, Bowman, Phil, Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens, Servin, Bertrand, Garrick, Dorian, Reecy, James, Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse, Schnabel, Robert, Taylor, Jeremy, Vinkhuyzen, Anna, Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik, Gredler, Birgit, Hozé, Chris, Boussaha, Mekki, Sanchez, Marie-Pierre, Rocha, Dominique, Capitan, Aurelien, Tribout, Thierry, Barbat, Anne, Croiseau, Pascal, Drögemüller, Cord, Jagannathan, Vidhya, Vander Jagt, Christy, Crowley, John, Bieber, Anna, Purfield, Deirdre, Berry, Donagh, Emmerling, Reiner, Götz, Kay-Uwe, Frischknecht, Mirjam, Russ, Ingolf, Sölkner, Johann, Van Tassell, Curtis, Fries, Ruedi, Stothard, Paul, Veerkamp, Roel, Boichard, Didier, Goddard, Mike, and Hayes, Ben
- Abstract
Stature is affected by many polymorphisms of small effect in humans1 . In contrast, variation in dogs, even within breeds, has been suggested to be largely due to variants in a small number of genes2,3. Here we use data from cattle to compare the genetic architecture of stature to those in humans and dogs. We conducted a meta-analysis for stature using 58,265 cattle from 17 populations with 25.4 million imputed whole-genome sequence variants. Results showed that the genetic architecture of stature in cattle is similar to that in humans, as the lead variants in 163 significantly associated genomic regions (P< 5 × 10−8) explained at most 13.8% of the phenotypic variance. Most of these variants were noncoding, including variants that were also expression quantitative trait loci (eQTLs) and in ChIP–seq peaks. There was significant overlap in loci for stature with humans and dogs, suggesting that a set of common genes regulates body size in mammals. Meta-analysis of data from 58,265 cattle shows that the genetic architecture underlying stature is similar to that in humans, where many genomic regions individually explain only a small amount of phenotypic variance.
- Published
- 2018
- Full Text
- View/download PDF
235. Analyses of pig genomes provide insight into porcine demography and evolution
- Author
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Groenen, Martien A, Archibald, Alan L., Uenishi, Hirohide, Tuggle, Christopher K., Takeuchi, Yasuhiro, Rothschild, Max F., Rogel-Gaillard, Claire, Park, Chankyu, Milan, Dennis, Megens, Hendrik-Jan, Li, Shengting, Larkin, Denis M., Kim, Heebal, Frantz, Laurent A. F., Caccamo, Mario, Ahn, Hyeonju, Aken, Bronwen L., Anselmo, Anna, Anthon, Christian, Auvil, Loretta, Badaoui, Bouabid, Beattie, Craig W., Bendixen, Christian, Berman, Daniel, Blecha, Frank, Blomberg, Jonas, Bolund, Lars, Bosse, Mirte, Botti, Sara, Zhan, Bujie, Bystrom, Megan, Capitanu, Boris, Carvalho-Silva, Denise, Chardon, Patrick, Chen, Celine, Cheng, Ryan, Choi, Sang-Haeng, Chow, William, Clark, Richard C., Clee, Christopher, Crooijmans, Richard P. M. A., Dawson, Harry D., Dehais, Patrice, Sapio, Fioravante De, Dibbits, Bert, Drou, Nizar, Du, Zhi-Qiang, Eversole, Kellye, Fadista, João, Fairley, Susan, Faraut, Thomas, Faulkner, Geoffrey J., Fowler, Katie E., Fredholm, Merete, Fritz, Eric, Gilbert, James G. R., Giuffra, Elisabetta, Gorodkin, Jan, Griffin, Darren K., Harrow, Jennifer L., Hayward, Alexander, Howe, Kerstin, Hu, Zhi-Liang, Humphray, Sean J., Hunt, Toby, Jensen, Henrik Hornshøj, Jeon, Jin-Tae, Jern, Patric, Jones, Matthew, Jurka, Jerzy, Kanamori, Hiroyuki, Kapetanovic, Ronan, Kim, Jaebum, Kim, Jae-Hwan, Kim, Kyu-Won, Kim, Tai-Hun, Larson, Greger, Lee, Kyooyeol, Lee, Kyung-Tai, Leggett, Richard, Lewin, Harris A., Li, Yingrui, Liu, Wansheng, Loveland, Jane E., Lu, Yao, Lunney, Joan K., Ma, Jian, Madsen, Ole, Mann, Katherine, Matthews, Lucy, McLaren, Stuart, Morozumi, Takeya, Murtaugh, Michael P., Narayan, Jitendra, Nguyen, Dinh Truong, Ni, Peixiang, Oh, Song-Jung, Onteru, Suneel, Panitz, Frank, Park, Eung-Woo, Park, Hong-Seog, Pascal, Geraldine, Paudel, Yogesh, Perez-Enciso, Miguel, Ramirez-Gonzalez, Ricardo, Reecy, James M., Rodriguez-Zas, Sandra, Rohrer, Gary A., Rund, Lauretta, Sang, Yongming, Schachtschneider, Kyle, Schraiber, Joshua G., Schwartz, John, Scobie, Linda, Scott, Carol, Searle, Stephen, Servin, Bertrand, Southey, Bruce R., Sperber, Goran, Stadler, Peter, Sweedler, Jonathan V., Tafer, Hakim, Thomsen, Bo, Wali, Rashmi, Wang, Jian, Wang, Jun, White, Simon, Xu, Xun, Yerke, Martine, Zhang, Guojie, Zhang, Jianguo, Zhang, Jie, Zhao, Shuhong, Rogers, Jane, Churcher, Carol, Schook, Lawrence B., Groenen, Martien A, Archibald, Alan L., Uenishi, Hirohide, Tuggle, Christopher K., Takeuchi, Yasuhiro, Rothschild, Max F., Rogel-Gaillard, Claire, Park, Chankyu, Milan, Dennis, Megens, Hendrik-Jan, Li, Shengting, Larkin, Denis M., Kim, Heebal, Frantz, Laurent A. F., Caccamo, Mario, Ahn, Hyeonju, Aken, Bronwen L., Anselmo, Anna, Anthon, Christian, Auvil, Loretta, Badaoui, Bouabid, Beattie, Craig W., Bendixen, Christian, Berman, Daniel, Blecha, Frank, Blomberg, Jonas, Bolund, Lars, Bosse, Mirte, Botti, Sara, Zhan, Bujie, Bystrom, Megan, Capitanu, Boris, Carvalho-Silva, Denise, Chardon, Patrick, Chen, Celine, Cheng, Ryan, Choi, Sang-Haeng, Chow, William, Clark, Richard C., Clee, Christopher, Crooijmans, Richard P. M. A., Dawson, Harry D., Dehais, Patrice, Sapio, Fioravante De, Dibbits, Bert, Drou, Nizar, Du, Zhi-Qiang, Eversole, Kellye, Fadista, João, Fairley, Susan, Faraut, Thomas, Faulkner, Geoffrey J., Fowler, Katie E., Fredholm, Merete, Fritz, Eric, Gilbert, James G. R., Giuffra, Elisabetta, Gorodkin, Jan, Griffin, Darren K., Harrow, Jennifer L., Hayward, Alexander, Howe, Kerstin, Hu, Zhi-Liang, Humphray, Sean J., Hunt, Toby, Jensen, Henrik Hornshøj, Jeon, Jin-Tae, Jern, Patric, Jones, Matthew, Jurka, Jerzy, Kanamori, Hiroyuki, Kapetanovic, Ronan, Kim, Jaebum, Kim, Jae-Hwan, Kim, Kyu-Won, Kim, Tai-Hun, Larson, Greger, Lee, Kyooyeol, Lee, Kyung-Tai, Leggett, Richard, Lewin, Harris A., Li, Yingrui, Liu, Wansheng, Loveland, Jane E., Lu, Yao, Lunney, Joan K., Ma, Jian, Madsen, Ole, Mann, Katherine, Matthews, Lucy, McLaren, Stuart, Morozumi, Takeya, Murtaugh, Michael P., Narayan, Jitendra, Nguyen, Dinh Truong, Ni, Peixiang, Oh, Song-Jung, Onteru, Suneel, Panitz, Frank, Park, Eung-Woo, Park, Hong-Seog, Pascal, Geraldine, Paudel, Yogesh, Perez-Enciso, Miguel, Ramirez-Gonzalez, Ricardo, Reecy, James M., Rodriguez-Zas, Sandra, Rohrer, Gary A., Rund, Lauretta, Sang, Yongming, Schachtschneider, Kyle, Schraiber, Joshua G., Schwartz, John, Scobie, Linda, Scott, Carol, Searle, Stephen, Servin, Bertrand, Southey, Bruce R., Sperber, Goran, Stadler, Peter, Sweedler, Jonathan V., Tafer, Hakim, Thomsen, Bo, Wali, Rashmi, Wang, Jian, Wang, Jun, White, Simon, Xu, Xun, Yerke, Martine, Zhang, Guojie, Zhang, Jianguo, Zhang, Jie, Zhao, Shuhong, Rogers, Jane, Churcher, Carol, and Schook, Lawrence B.
- Published
- 2012
236. Lipid metabolism, adipocyte depot physiology and utilization of meat animals as experimental models for metabolic research.
- Author
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Animal and Poultry Sciences, Dodson, Michael V., Hausman, Gary J., Guan, Leluo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., Jiang, Zhihua, Animal and Poultry Sciences, Dodson, Michael V., Hausman, Gary J., Guan, Leluo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., and Jiang, Zhihua
- Abstract
Meat animals are unique as experimental models for both lipid metabolism and adipocyte studies because of their direct economic value for animal production. This paper discusses the principles that regulate adipogenesis in major meat animals (beef cattle, dairy cattle, and pigs), the definition of adipose depot-specific regulation of lipid metabolism or adipogenesis, and introduces the potential value of these animals as models for metabolic research including mammary biology and the ontogeny of fatty livers.
- Published
- 2010
237. Skeletal muscle stem cells from animals I. Basic cell biology.
- Author
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Animal and Poultry Sciences, Dodson, Michael V., Hausman, Gary J., Guan, Leluo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., Jiang, Zhihua, Animal and Poultry Sciences, Dodson, Michael V., Hausman, Gary J., Guan, Leluo, Du, Min, Rasmussen, Theodore P., Poulos, Sylvia P., Mir, Priya, Bergen, Werner G., Fernyhough, Melinda E., McFarland, Douglas C., Rhoads, Robert P., Soret, Beatrice, Reecy, James M., Velleman, Sandra G., and Jiang, Zhihua
- Abstract
Skeletal muscle stem cells from food-producing animals are of interest to agricultural life scientists seeking to develop a better understanding of the molecular regulation of lean tissue (skeletal muscle protein hypertrophy) and intramuscular fat (marbling) development. Enhanced understanding of muscle stem cell biology and function is essential for developing technologies and strategies to augment the metabolic efficiency and muscle hypertrophy of growing animals potentially leading to greater efficiency and reduced environmental impacts of animal production, while concomitantly improving product uniformity and consumer acceptance and enjoyment of muscle foods.
- Published
- 2010
238. The Genome Sequence of Taurine Cattle : A Window to Ruminant Biology and Evolution
- Author
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Elsik, Christine G., Tellam, Ross L., Worley, Kim C., Gibbs, Richard A., Abatepaulo, Antonio R. R., Abbey, Colette A., Adelson, David L., Aerts, Jan, Ahola, Virpi, Alexander, Lee, Alioto, Tyler, Almeida, Iassudara G., Amadio, Ariel F., Anatriello, Elen, Antonarakis, Stylianos E., Anzola, Juan M., Astashyn, Alex, Bahadue, Suria M., Baldwin, Cynthia L., Barris, Wes, Baxter, Rebecca, Bell, Stephanie Nicole, Bennett, Anna K., Bennett, Gary L., Biase, Fernando H., Boldt, Clayton R., Bradley, Daniel G., Brinkman, Fiona S. L., Brinkmeyer-Langford, Candice L., Brown, Wendy C., Brownstein, Michael J., Buhay, Christian, Caetano, Alexandre R., Camara, Francisco, Carroll, Jeffrey A., Carvalho, Wanessa A., Casey, Theresa, Cervelatti, Elaine P., Chack, Joseph, Chacko, Elsa, Chandrabose, Mimi M., Chapin, Jennifer E., Chapple, Charles E., Chen, Hsiu-Chuan, Chen, Lin, Cheng, Ye, Cheng, Ze, Childers, Christopher P., Chitko-McKown, Carol G., Chiu, Readman, Choi, Jungwoo, Chrast, Jacqueline, Colley, Adam J., Connelley, Tomothy, Cree, Andy, Curry, Stacey, Dalrymple, Brian, Diep Dao, Marvin, Davis, Clay, de Oliveira, Carlo J. F., de Miranda Santos, Isabel K. F., de Campos, Tatiana A., Deobald, Heather, Devinoy, Eve, Dickins, C. Michael, Yan, Ding, Dinh, Huyen H., De Donato, Marcos, Donohue, Kaitlin E., Donthu, Ravikiran, Dovc, Peter, Dugan-Rocha, Shannon, Durbin, K. James, Eberlein, Annett, Edgar, Robert C., Egan, Amy, Eggen, Andre, Eichler, Evan E., Elhaik, Eran, Ellis, Shirley A., Elnitski, Laura, Ermolaeva, Olga, Eyras, Eduardo, Fitzsimmons, Carolyn J., Fowler, Gerald R., Franzin, Alessandra M., Fritz, Krista, Gabisi, Ramatu Ayiesha, Garcia, Gustavo R., Garcia, Jose Fernando, Genini, Sem, Gerlach, Daniel, German, J. Bruce, Gilbert, James G. R., Gill, Clare A., Gladney, Cody J., Glass, Elizabeth J., Goodell, Jason, Grant, Jason R., Graur, Dan, Greaser, Marion L., Green, Jonathan A., Green, Ronnie D., Guan, Leluo, Guigo, Roderic, Hadsell, Darryl L., Hagen, Darren E., Hakimov, Hatam A., Halgren, Rob, Hamernik, Debora L., Hamilton, Cerissa, Harhay, Gregory P., Harrow, Jennifer L., Hart, Elizabeth A., Hastings, Nicola, Havlak, Paul, Henrichsen, Charlotte N., Hernandez, Judith, Hernandez, Marta, Herzig, Carolyn T. A., Hiendleder, Stefan G., Hines, Sandra, Hitchens, Matthew Edward, Hlavina, Wratko, Hobbs, Matthew, Holder, Michael, Holt, Robert A., Hu, Zhi-Liang, Hume, Jennifer, Iivanainen, Antti, Ingham, Aaron, Iso-Touru, Terhi, Jamis, Catherine, Jann, Oliver, Jensen, Kirsty, Jhangiani, Shalini N., Jiang, Huaiyang, Johnson, Angela Jolivet, Jones, Steven J. M., Joshi, Vandita, Junier, Thomas, Kapetis, Dimos, Kappes, Steve M., Kapustin, Yuri, Keele, John W., Kent, Matthew P., Kerr, Tovah, Khalil, Sari S., Khatib, Hasan, Kiryutin, Boris, Kitts, Paul, Kokocinski, Felix, Kolbehdari, Davood, Kovar, Christie L., Kriventseva, Evgenia V., Kumar, Charu G., Kumar, Dinesh, Lahmers, Kevin K., Landrum, Melissa, Larkin, Denis M., Lau, Lilian P. L., Leach, Richard, Lee, Justin C. M., Lee, Sandra, Lemay, Danielle G., Lewin, Harris A., Lewis, Lora R., Li, Changxi, Lien, Sigbjorn, Liu, George E., Liu, Yih-shin, Liu, Yue, Logan, Krystin M., Lopez, John, Lozado, Ryan J., Lutzow, Ylva Strandberg, Lynn, David J., MacNeil, Michael D., Maglott, Donna, Malinverni, Roberto, Maqbool, Nauman J., Marques, Elisa, Marra, Marco A., Martin, William F., Martins, Natalia F., Maruyama, Sandra R., Matukumalli, Lakshmi K., Mazza, Raffaele, McEwan, John C., McKay, Stephanie D., McLean, Kim L., McWilliam, Sean, Medrano, Juan F., Memili, Erdogan, Moen, Charles, Molenaar, Adrian J., Moore, Stephen S., Moore, Richard, More, Daniela D., Moreno, Barbara T., Morgan, Margaret B., Muntean, Carl T., Muzny, Donna M., Nandakumar, Hari P., Nazareth, Lynne V., Nguyen, Ngoc Bich, Nicholas, Frank W., Nogueira, Marcelo F. G., Okwuonu, Geoffrey O., Olsaker, Ingrid, Pant, Sameer D., Panzitta, Francesca, Pastor, Rosemeire C. P., Patel, Bella Mayurkumar, Payne, Gemma M., Plass, Mireya, Poli, Mario A., Poslusny, Nathan, Pruitt, Kim, Pu, Ling-Ling, Qin, Xiang, Rachagani, Satyanarayana, Raison, Joy M., Ranganathan, Shoba, Ratnakumar, Abhirami, Razpet, Andrej, Reecy, James, Reese, Justin T., Ren, Yanru, Reymond, Alexandre, Riggs, Penny K., Rijnkels, Monique, Rincon, Gonzalo, Roberts, Andy, Rodriguez-Osorio, Nelida, Rodriguez-Zas, Sandra L., Romero, Natasha E., Rosenwald, Anne, Ruiz, San Juana, Sabo, Aniko, Salih, Hanni, Sando, Lillian, Santibanez, Jireh, Sapojnikov, Victor, Schein, Jacqueline E., Schmutz, Sheila M., Schnabel, Robert D., Schook, Lawrence, Searle, Stephen M., Seo, Seongwon, Shen, Yufeng, Shen, Libing, Sherman, Laura, Skow, Loren C., Smith, Timothy, Snelling, Warren M., Sodergren, Erica, Solovyev, Victor, Song, Henry, Song, Jiuzhou, Sonstegard, Tad S., Southey, Bruce R., Souvorov, Alexandre, Spurlock, Diane, Steffen, David, Stone, Roger T., Stothard, Paul, Sugimoto, Yoshikazu, Sweedler, Jonathan V., Takasuga, Akiko, Tammen, Imke, Taniguchi, Masaaki, Taylor, Jeremy F., Telugu, Bhanu Prakash V. L., Ucla, Catherine, Urbanski, Jennifer M., Utsunomiya, Yuri T., Van, Curtis P., Vattathil, Selina, Verschoor, Chris P., Waardenberg, Ashley J., Walker, Angela, Wang, Zhiquan, Ward, Robert, Warren, James T., Waterman, Richard C., Weikard, Rosemarie, Weinstock, George M., Welsh, Thomas H., Jr., Wheeler, David A., Wheeler, Thomas T., White, Stephen N., Whiteside, Matthew D., Wilczek-Boney, Katarzyna, Williams, John L., Williams, Rex Lee, Jr., Wilming, Laurens G., Womack, James, Wright, Rita A., Wunderlich, Kris R., Wyss, Carine, Yang, Mary Q., Yang, Jianqi, Zdobnov, Evgeny M., Zhang, Jingkun, Zhao, Feng-Qi, Zhu, Bin, Elsik, Christine G., Tellam, Ross L., Worley, Kim C., Gibbs, Richard A., Abatepaulo, Antonio R. R., Abbey, Colette A., Adelson, David L., Aerts, Jan, Ahola, Virpi, Alexander, Lee, Alioto, Tyler, Almeida, Iassudara G., Amadio, Ariel F., Anatriello, Elen, Antonarakis, Stylianos E., Anzola, Juan M., Astashyn, Alex, Bahadue, Suria M., Baldwin, Cynthia L., Barris, Wes, Baxter, Rebecca, Bell, Stephanie Nicole, Bennett, Anna K., Bennett, Gary L., Biase, Fernando H., Boldt, Clayton R., Bradley, Daniel G., Brinkman, Fiona S. L., Brinkmeyer-Langford, Candice L., Brown, Wendy C., Brownstein, Michael J., Buhay, Christian, Caetano, Alexandre R., Camara, Francisco, Carroll, Jeffrey A., Carvalho, Wanessa A., Casey, Theresa, Cervelatti, Elaine P., Chack, Joseph, Chacko, Elsa, Chandrabose, Mimi M., Chapin, Jennifer E., Chapple, Charles E., Chen, Hsiu-Chuan, Chen, Lin, Cheng, Ye, Cheng, Ze, Childers, Christopher P., Chitko-McKown, Carol G., Chiu, Readman, Choi, Jungwoo, Chrast, Jacqueline, Colley, Adam J., Connelley, Tomothy, Cree, Andy, Curry, Stacey, Dalrymple, Brian, Diep Dao, Marvin, Davis, Clay, de Oliveira, Carlo J. F., de Miranda Santos, Isabel K. F., de Campos, Tatiana A., Deobald, Heather, Devinoy, Eve, Dickins, C. Michael, Yan, Ding, Dinh, Huyen H., De Donato, Marcos, Donohue, Kaitlin E., Donthu, Ravikiran, Dovc, Peter, Dugan-Rocha, Shannon, Durbin, K. James, Eberlein, Annett, Edgar, Robert C., Egan, Amy, Eggen, Andre, Eichler, Evan E., Elhaik, Eran, Ellis, Shirley A., Elnitski, Laura, Ermolaeva, Olga, Eyras, Eduardo, Fitzsimmons, Carolyn J., Fowler, Gerald R., Franzin, Alessandra M., Fritz, Krista, Gabisi, Ramatu Ayiesha, Garcia, Gustavo R., Garcia, Jose Fernando, Genini, Sem, Gerlach, Daniel, German, J. Bruce, Gilbert, James G. R., Gill, Clare A., Gladney, Cody J., Glass, Elizabeth J., Goodell, Jason, Grant, Jason R., Graur, Dan, Greaser, Marion L., Green, Jonathan A., Green, Ronnie D., Guan, Leluo, Guigo, Roderic, Hadsell, Darryl L., Hagen, Darren E., Hakimov, Hatam A., Halgren, Rob, Hamernik, Debora L., Hamilton, Cerissa, Harhay, Gregory P., Harrow, Jennifer L., Hart, Elizabeth A., Hastings, Nicola, Havlak, Paul, Henrichsen, Charlotte N., Hernandez, Judith, Hernandez, Marta, Herzig, Carolyn T. A., Hiendleder, Stefan G., Hines, Sandra, Hitchens, Matthew Edward, Hlavina, Wratko, Hobbs, Matthew, Holder, Michael, Holt, Robert A., Hu, Zhi-Liang, Hume, Jennifer, Iivanainen, Antti, Ingham, Aaron, Iso-Touru, Terhi, Jamis, Catherine, Jann, Oliver, Jensen, Kirsty, Jhangiani, Shalini N., Jiang, Huaiyang, Johnson, Angela Jolivet, Jones, Steven J. M., Joshi, Vandita, Junier, Thomas, Kapetis, Dimos, Kappes, Steve M., Kapustin, Yuri, Keele, John W., Kent, Matthew P., Kerr, Tovah, Khalil, Sari S., Khatib, Hasan, Kiryutin, Boris, Kitts, Paul, Kokocinski, Felix, Kolbehdari, Davood, Kovar, Christie L., Kriventseva, Evgenia V., Kumar, Charu G., Kumar, Dinesh, Lahmers, Kevin K., Landrum, Melissa, Larkin, Denis M., Lau, Lilian P. L., Leach, Richard, Lee, Justin C. M., Lee, Sandra, Lemay, Danielle G., Lewin, Harris A., Lewis, Lora R., Li, Changxi, Lien, Sigbjorn, Liu, George E., Liu, Yih-shin, Liu, Yue, Logan, Krystin M., Lopez, John, Lozado, Ryan J., Lutzow, Ylva Strandberg, Lynn, David J., MacNeil, Michael D., Maglott, Donna, Malinverni, Roberto, Maqbool, Nauman J., Marques, Elisa, Marra, Marco A., Martin, William F., Martins, Natalia F., Maruyama, Sandra R., Matukumalli, Lakshmi K., Mazza, Raffaele, McEwan, John C., McKay, Stephanie D., McLean, Kim L., McWilliam, Sean, Medrano, Juan F., Memili, Erdogan, Moen, Charles, Molenaar, Adrian J., Moore, Stephen S., Moore, Richard, More, Daniela D., Moreno, Barbara T., Morgan, Margaret B., Muntean, Carl T., Muzny, Donna M., Nandakumar, Hari P., Nazareth, Lynne V., Nguyen, Ngoc Bich, Nicholas, Frank W., Nogueira, Marcelo F. G., Okwuonu, Geoffrey O., Olsaker, Ingrid, Pant, Sameer D., Panzitta, Francesca, Pastor, Rosemeire C. P., Patel, Bella Mayurkumar, Payne, Gemma M., Plass, Mireya, Poli, Mario A., Poslusny, Nathan, Pruitt, Kim, Pu, Ling-Ling, Qin, Xiang, Rachagani, Satyanarayana, Raison, Joy M., Ranganathan, Shoba, Ratnakumar, Abhirami, Razpet, Andrej, Reecy, James, Reese, Justin T., Ren, Yanru, Reymond, Alexandre, Riggs, Penny K., Rijnkels, Monique, Rincon, Gonzalo, Roberts, Andy, Rodriguez-Osorio, Nelida, Rodriguez-Zas, Sandra L., Romero, Natasha E., Rosenwald, Anne, Ruiz, San Juana, Sabo, Aniko, Salih, Hanni, Sando, Lillian, Santibanez, Jireh, Sapojnikov, Victor, Schein, Jacqueline E., Schmutz, Sheila M., Schnabel, Robert D., Schook, Lawrence, Searle, Stephen M., Seo, Seongwon, Shen, Yufeng, Shen, Libing, Sherman, Laura, Skow, Loren C., Smith, Timothy, Snelling, Warren M., Sodergren, Erica, Solovyev, Victor, Song, Henry, Song, Jiuzhou, Sonstegard, Tad S., Southey, Bruce R., Souvorov, Alexandre, Spurlock, Diane, Steffen, David, Stone, Roger T., Stothard, Paul, Sugimoto, Yoshikazu, Sweedler, Jonathan V., Takasuga, Akiko, Tammen, Imke, Taniguchi, Masaaki, Taylor, Jeremy F., Telugu, Bhanu Prakash V. L., Ucla, Catherine, Urbanski, Jennifer M., Utsunomiya, Yuri T., Van, Curtis P., Vattathil, Selina, Verschoor, Chris P., Waardenberg, Ashley J., Walker, Angela, Wang, Zhiquan, Ward, Robert, Warren, James T., Waterman, Richard C., Weikard, Rosemarie, Weinstock, George M., Welsh, Thomas H., Jr., Wheeler, David A., Wheeler, Thomas T., White, Stephen N., Whiteside, Matthew D., Wilczek-Boney, Katarzyna, Williams, John L., Williams, Rex Lee, Jr., Wilming, Laurens G., Womack, James, Wright, Rita A., Wunderlich, Kris R., Wyss, Carine, Yang, Mary Q., Yang, Jianqi, Zdobnov, Evgeny M., Zhang, Jingkun, Zhao, Feng-Qi, and Zhu, Bin
- Abstract
To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among seven mammalian species of which 1217 are absent or undetected in noneutherian (marsupial or monotreme) genomes. Cattle-specific evolutionary breakpoint regions in chromosomes have a higher density of segmental duplications, enrichment of repetitive elements, and species-specific variations in genes associated with lactation and immune responsiveness. Genes involved in metabolism are generally highly conserved, although five metabolic genes are deleted or extensively diverged from their human orthologs. The cattle genome sequence thus provides a resource for understanding mammalian evolution and accelerating livestock genetic improvement for milk and meat production.
- Published
- 2009
- Full Text
- View/download PDF
239. Associations between infectious bovine keratoconjunctivitis at weaning and ultrasongraphically measured body composition traits in yearling cattle
- Author
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Funk, Lucas D., primary, Reecy, James M., additional, Wang, Chong, additional, Tait, Richard G., additional, and O'Connor, Annette M., additional
- Published
- 2014
- Full Text
- View/download PDF
240. Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
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Baes, Christine F, primary, Dolezal, Marlies A, additional, Koltes, James E, additional, Bapst, Beat, additional, Fritz-Waters, Eric, additional, Jansen, Sandra, additional, Flury, Christine, additional, Signer-Hasler, Heidi, additional, Stricker, Christian, additional, Fernando, Rohan, additional, Fries, Ruedi, additional, Moll, Juerg, additional, Garrick, Dorian J, additional, Reecy, James M, additional, and Gredler, Birgit, additional
- Published
- 2014
- Full Text
- View/download PDF
241. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
- Author
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Taylor, Christopher, Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Bal, Catherine A., Binz, Pierre-Alain, Bogue, Molly, Booth, Tim, Brazma, Alvis, Brinkman, Ryan R., Clark, Adam Michael, Deutsch, Eric W., Fiehn, Oliver, Fostel, Jennifer, Ghazal, Peter, Gibson, Frank, Gray, Tanya, Grimes, Graeme, Hancock, John M., Hardy, Nigel W., Hermjakob, Henning, Julian, Randall K., Kane, Matthew, Kettner, Carsten, Kinsinger, Christopher, Kolker, Eugene, Kuiper, Martin, Le Novere, Nicholas, Leebens-mack, Jim, Lewis, Suzanna E., Lord, Phillip, Mallon, Anne-Marie, Marthandan, Nishanth, Masuya, Hiroshi, McNally, Ruth, Mehrle, Alexander, Morrison, Norman, Orchard, Sandra, Quackenbush, John, Reecy, James M., Robertson, Donald G., Rocca-Serra, Phillippe, Rodriguez, Henry, Rosenfelder, Heiko, Santoyo-lopez, Janvier, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Snape, Jason, Stoeckert, Christian J., Tipton, Keith, Sterk, Peter, Untergasser, Andreas, Vandesompele, Jo, Wiemann, Stefan, Taylor, Christopher, Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Bal, Catherine A., Binz, Pierre-Alain, Bogue, Molly, Booth, Tim, Brazma, Alvis, Brinkman, Ryan R., Clark, Adam Michael, Deutsch, Eric W., Fiehn, Oliver, Fostel, Jennifer, Ghazal, Peter, Gibson, Frank, Gray, Tanya, Grimes, Graeme, Hancock, John M., Hardy, Nigel W., Hermjakob, Henning, Julian, Randall K., Kane, Matthew, Kettner, Carsten, Kinsinger, Christopher, Kolker, Eugene, Kuiper, Martin, Le Novere, Nicholas, Leebens-mack, Jim, Lewis, Suzanna E., Lord, Phillip, Mallon, Anne-Marie, Marthandan, Nishanth, Masuya, Hiroshi, McNally, Ruth, Mehrle, Alexander, Morrison, Norman, Orchard, Sandra, Quackenbush, John, Reecy, James M., Robertson, Donald G., Rocca-Serra, Phillippe, Rodriguez, Henry, Rosenfelder, Heiko, Santoyo-lopez, Janvier, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Snape, Jason, Stoeckert, Christian J., Tipton, Keith, Sterk, Peter, Untergasser, Andreas, Vandesompele, Jo, and Wiemann, Stefan
- Published
- 2008
242. Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
- Author
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Taylor, Chris F., Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Ball, Catherine A., Binz, Pierre-Alain, Bogue, Molly, Booth, Tim, Brazma, Alvis, Brinkman, Ryan R., Clark, Adam Michael, Deutsch, Eric W., Fiehn, Oliver, Fostel, Jennifer, Ghazal, Peter, Gibson, Frank, Gray, Tanya, Grimes, Graeme, Hancock, John M., Hardy, Nigel W., Hermjakob, Henning, Julian, Randall K., Kane, Matthew, Kettner, Carsten, Kinsinger, Christopher, Kolker, Eugene, Kuiper, Martin, Le Novere, Nicolas, Leebens-Mack, Jim, Lewis, Suzanna E., Lord, Phillip, Mallon, Ann-Marie, Marthandan, Nishanth, Masuya, Hiroshi, McNally, Ruth, Mehrle, Alexander, Morrison, Norman, Orchard, Sandra, Quackenbush, John, Reecy, James M., Robertson, Donald G., Rocca-Serra, Philippe, Rodriguez, Henry, Rosenfelder, Heiko, Santoyo-Lopez, Javier, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Snape, Jason, Stoeckert, Christian J., Tipton, Keith, Sterk, Peter, Untergasser, Andreas, Vandesompele, Jo, Wiemann, Stefan, Taylor, Chris F., Field, Dawn, Sansone, Susanna-Assunta, Aerts, Jan, Apweiler, Rolf, Ashburner, Michael, Ball, Catherine A., Binz, Pierre-Alain, Bogue, Molly, Booth, Tim, Brazma, Alvis, Brinkman, Ryan R., Clark, Adam Michael, Deutsch, Eric W., Fiehn, Oliver, Fostel, Jennifer, Ghazal, Peter, Gibson, Frank, Gray, Tanya, Grimes, Graeme, Hancock, John M., Hardy, Nigel W., Hermjakob, Henning, Julian, Randall K., Kane, Matthew, Kettner, Carsten, Kinsinger, Christopher, Kolker, Eugene, Kuiper, Martin, Le Novere, Nicolas, Leebens-Mack, Jim, Lewis, Suzanna E., Lord, Phillip, Mallon, Ann-Marie, Marthandan, Nishanth, Masuya, Hiroshi, McNally, Ruth, Mehrle, Alexander, Morrison, Norman, Orchard, Sandra, Quackenbush, John, Reecy, James M., Robertson, Donald G., Rocca-Serra, Philippe, Rodriguez, Henry, Rosenfelder, Heiko, Santoyo-Lopez, Javier, Scheuermann, Richard H., Schober, Daniel, Smith, Barry, Snape, Jason, Stoeckert, Christian J., Tipton, Keith, Sterk, Peter, Untergasser, Andreas, Vandesompele, Jo, and Wiemann, Stefan
- Abstract
The Minimum Information for Biological and Biomedical Investigations (MIBBI) project aims to foster the coordinated development of minimum-information checklists and provide a resource for those exploring the range of extant checklists.
- Published
- 2008
243. Body composition and gene expression QTL mapping in mice reveals imprinting and interaction effects
- Author
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Cheng, Ye, primary, Rachagani, Satyanarayana, additional, Cánovas, Angela, additional, Mayes, Mary Sue, additional, Tait, Richard G, additional, Dekkers, Jack CM, additional, and Reecy, James M, additional
- Published
- 2013
- Full Text
- View/download PDF
244. Genome-wide association and prediction of direct genomic breeding values for composition of fatty acids in Angus beef cattlea
- Author
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Saatchi, Mahdi, primary, Garrick, Dorian J, additional, Tait, Richard G, additional, Mayes, Mary S, additional, Drewnoski, Mary, additional, Schoonmaker, Jon, additional, Diaz, Clara, additional, Beitz, Don C, additional, and Reecy, James M, additional
- Published
- 2013
- Full Text
- View/download PDF
245. In vitro neutralization of HoBi-like viruses by antibodies in serum of cattle immunized with inactivated or modified live vaccines of bovine viral diarrhea viruses 1 and 2
- Author
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Bauermann, Fernando V., primary, Harmon, Aaron, additional, Flores, Eduardo F., additional, Falkenberg, Shollie M., additional, Reecy, James M., additional, and Ridpath, Julia F., additional
- Published
- 2013
- Full Text
- View/download PDF
246. The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species
- Author
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Park, Carissa A, primary, Bello, Susan M, additional, Smith, Cynthia L, additional, Hu, Zhi-Liang, additional, Munzenmaier, Diane H, additional, Nigam, Rajni, additional, Smith, Jennifer R, additional, Shimoyama, Mary, additional, Eppig, Janan T, additional, and Reecy, James M, additional
- Published
- 2013
- Full Text
- View/download PDF
247. Structural and functional annotation of the porcine immunome
- Author
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Dawson, Harry D, primary, Loveland, Jane E, additional, Pascal, Géraldine, additional, Gilbert, James GR, additional, Uenishi, Hirohide, additional, Mann, Katherine M, additional, Sang, Yongming, additional, Zhang, Jie, additional, Carvalho-Silva, Denise, additional, Hunt, Toby, additional, Hardy, Matthew, additional, Hu, Zhiliang, additional, Zhao, Shu-Hong, additional, Anselmo, Anna, additional, Shinkai, Hiroki, additional, Chen, Celine, additional, Badaoui, Bouabid, additional, Berman, Daniel, additional, Amid, Clara, additional, Kay, Mike, additional, Lloyd, David, additional, Snow, Catherine, additional, Morozumi, Takeya, additional, Cheng, Ryan Pei-Yen, additional, Bystrom, Megan, additional, Kapetanovic, Ronan, additional, Schwartz, John C, additional, Kataria, Ranjit, additional, Astley, Matthew, additional, Fritz, Eric, additional, Steward, Charles, additional, Thomas, Mark, additional, Wilming, Laurens, additional, Toki, Daisuke, additional, Archibald, Alan L, additional, Bed’Hom, Bertrand, additional, Beraldi, Dario, additional, Huang, Ting-Hua, additional, Ait-Ali, Tahar, additional, Blecha, Frank, additional, Botti, Sara, additional, Freeman, Tom C, additional, Giuffra, Elisabetta, additional, Hume, David A, additional, Lunney, Joan K, additional, Murtaugh, Michael P, additional, Reecy, James M, additional, Harrow, Jennifer L, additional, Rogel-Gaillard, Claire, additional, and Tuggle, Christopher K, additional
- Published
- 2013
- Full Text
- View/download PDF
248. Genome-wide association study of infectious bovine keratoconjunctivitis in Angus cattle
- Author
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Kizilkaya, Kadir, primary, Tait, Richard G, additional, Garrick, Dorian J, additional, Fernando, Rohan L, additional, and Reecy, James M, additional
- Published
- 2013
- Full Text
- View/download PDF
249. Redesigning Beef Cattle to Have a More Healthful Fatty Acid Composition
- Author
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Zhang, Shu, Knight, Travis J., Tait, Richard G., Jr., Trenkle, Allen H., Wilson, Doyle E., Rouse, Gene H., Strohbehn, Daryl R., Reecy, James M., Beitz, Donald C., Minick, Jennifer A., Zhang, Shu, Knight, Travis J., Tait, Richard G., Jr., Trenkle, Allen H., Wilson, Doyle E., Rouse, Gene H., Strohbehn, Daryl R., Reecy, James M., Beitz, Donald C., and Minick, Jennifer A.
- Abstract
We propose to improve the fatty acid composition of beef by capitalizing on the natural genetic differences among animals. It is our thought that improvements in the healthfulness of the fatty acid composition of beef can be made while maintaining other positive attributes. Stearoyl-CoA desaturase is responsible for the conversion of 16:0 and 18:0 to 16:1 and 18:1, respectively, the two major monounsaturated fatty acids of bovine lipids.
- Published
- 2006
250. Pig immune response to general stimulus and to porcine reproductive and respiratory syndrome virus infection: a meta-analysis approach
- Author
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Badaoui, Bouabid, primary, Tuggle, Christopher K, additional, Hu, Zhiliang, additional, Reecy, James M, additional, Ait-Ali, Tahar, additional, Anselmo, Anna, additional, and Botti, Sara, additional
- Published
- 2013
- Full Text
- View/download PDF
Catalog
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