7,327 results on '"Loboda, A"'
Search Results
202. Ranking vertices for active module recovery problem
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Isomurodov, Javlon E., Loboda, Alexander A., and Sergushichev, Alexey A.
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Computer Science - Data Structures and Algorithms - Abstract
Selecting a connected subnetwork enriched in individually important vertices is an approach commonly used in many areas of bioinformatics, including analysis of gene expression data, mutations, metabolomic profiles and others. It can be formulated as a recovery of an active module from which an experimental signal is generated. Commonly, methods for solving this problem result in a single subnetwork that is considered to be a good candidate. However, it is usually useful to consider not one but multiple candidate modules at different significance threshold levels. Therefore, in this paper we suggest to consider a problem of finding a vertex ranking instead of finding a single module. We also propose two algorithms for solving this problem: one that we consider to be optimal but computationally expensive for real-world networks and one that works close to the optimal in practice and is also able to work with big networks.
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- 2017
203. The effect of three-stage ionization on the structure formation of a concrete mixture during shotcrete
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Valery Yakovlevich Mishchenko, Alexey Lvovich Semenov, Larisa Nikolaevna Titova, and Dmitry Vladimirovich Loboda
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shotcrete ,electrostatics ,ionization ,corona electrode ,material rebound ,particle charging ,Real estate business ,HD1361-1395.5 - Abstract
The article deals with the problem of reducing rebound and dust formation, as well as increasing the strength of shotcrete. It is known that with “dry” shotcrete, the rebound is especially significant, since the mixture does not have time to acquire sufficient adhesive properties when mixing different phases. As a result, there is an irreparable loss of a significant part of the applied material. The formation of crystal centers that ensure the strength of concrete also occurs slower than with “wet” shotcrete, since the contact of the binder with water in the nozzle of the shotcrete machine is too short. This leads to a decrease in strength characteristics, slowing down the setting of shotcrete. To solve this problem, a method was developed for applying a concrete mixture to enclosing structures using a previously patented experimental nozzle and electrostatic treatment. This method, for a long time, has been successfully used for painting various surfaces, and its modernization will allow the introduction of electrostatics in shotcrete. A systematic ionization of the binder and then the finished mixture is proposed, as a result of which the shotcrete will be attracted to the shotcrete structure along the power lines. To obtain empirical data and confirm theoretical calculations, laboratory tests were carried out, during which the samples of both the initial shotcrete and those exposed to electrostatics were formed. During the application of the mixture, the magnitude of the rebound was recorded at various distances of the nozzle with the nozzle fixed on it from the shotcrete surface. Samples of the resulting concrete were examined on universal testing machines in order to determine the specific heat release, as well as the compressive and bending strength. The experiments showed that electrostatic treatment allows to speed up the time of the initial setting of the cement dough due to faster hydration of the mixture. An improvement in the strength of shotcrete and a significant reduction in rebound were recorded.
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- 2023
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204. Editorial: Fragment-based electronic structure methods for solids
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Oleksandr Loboda, Peter Strizhak, Robert W. Góra, and Ctirad Cervinka
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DFT ,GIPAW ,NMR ,fragment approach ,embedding models ,molecular crystals ,Chemistry ,QD1-999 - Published
- 2023
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205. One year of the full-scale war in Ukraine and kidney replacement therapy: Where do we stand now? A brief report of the Ukrainian Renal Disaster Relief Committee of the Ukrainian Association of Nephrologists and Kidney Transplant Specialists
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M. Kolesnyk, I. Dudar, N. Stepanova, O. Loboda, I. Shifris, Y. Honchar, E. Krasyuk, V. Novakivskyy, S. Fomina, N. Kozliuk, and O. Razvazhaeva
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Ukraine, war, kidney patients, Ukrainian Renal Disaster Relief Committee of the Ukrainian Association of Nephrologists and Kidney Transplant Specialists. ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
The war in Ukraine is now entering its ninth year, and a year has passed since the russian army invaded Ukraine on a large scale. A few months ago, the Ukrainian Renal Disaster Relief Committee of the Ukrainian Association of Nephrologists and Kidney Transplant Specialists was established and began its work to provide immediate support to kidney patients during the war. In this brief report, we present the first data collected on the number of patients receiving kidney replacement therapy, the possibility of enrolling new patients, and the availability of an autonomous electricity and water supply in all regions of Ukraine accessible for communication. In addition, we provide a brief analysis of the dynamics of the regional distribution of patients treated with kidney replacement therapy in the war year.
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- 2023
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206. Secondary hyperparathyroidism in diabetic kidney disease patients treated with hemodialysis
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I.O. Dudar, V.M. Savchuk, O.M. Loboda, and S.L. Dudar
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вторинний гіперпаратиреоз, гемодіаліз, паратиреоїдний гормон, глікозильований гемоглобін, тригліцерид-глюкозний індекс. ,Diseases of the genitourinary system. Urology ,RC870-923 - Abstract
Метою нашої роботи було вивчити особливості ВГПТ у пацієнтів з діабетичною хворобою нирок, які лікуються методом гемодіалізу. Методи. Ми провели поперечне (одномоментне) дослідження. До дослідження були залучені 263 гемодіалізних пацієнтів з вторинним гіперпаратиреозом. У всіх хворих визначали рівні паратгормону (ПТГ), глікозильованого гемоглобіну (HbA1c), 25-гідроксивітаміну Д (вітамін Д 25-ОН), холестерину (ХС), тригліцеридів (ТГ), лужної фосфатази (ЛФ), С-реактивного білку (СРБ), альбуміну сироватки крові, розраховувався тригліцерид-глюкозний індекс (ТГІ). Проведений аналіз кореляційних зв’язків між рівнями досліджуваних показників та рівнем ПТГ. Було оцінено зв'язок ТГІ з рівнями оцінюваних показників. Результати. У пацієнтів, які лікуються ГД з ДХН порівняно з хворими без діабету рівень ПТГ був достовірно нижчим. Рівень ЛФ, вітаміну Д 25-ОН, альбуміну були достовірно нижчими у пацієнтів з ДХН, а СРБ вищим ніж у хворих без діабету (р
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- 2023
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207. Plasma dynamics in solar macrospicules from high-cadence EUV observations
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Loboda, I. P. and Bogachev, S. A.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Macrospicules are relatively large spicule-like formations found mainly over the polar coronal holes when observing in the transition region spectral lines. In this study, we took advantage of the two short series of observations in the He II 304 \r{A} line obtained by the TESIS solar observatory with a cadence of up to 3.5 s to study the dynamics of macrospicules in unprecedented detail. We used a one-dimensional hydrodynamic method based on the assumption of their axial symmetry and on a simple radiative transfer model to reconstruct the evolution of the internal velocity field of 18 macrospicules from this dataset. Besides the internal dynamics, we studied the motion of the apparent end points of the same 18 macrospicules and found 15 of them to follow parabolic trajectories with high precision which correspond closely to the obtained velocity fields. We found that in a clear, unperturbed case these macrospicules move with a constant deceleration inconsistent with a purely ballistic motion and have roughly the same velocity along their entire axis, with the obtained decelerations typically ranging from 160 to 230 m/s^2, and initial velocities from 80 to 130 km/s. We also found a propagating acoustic wave for one of the macrospicules and a clear linear correlation between the initial velocities of the macrospicules and their decelerations, which indicates that they may be driven by magneto-acoustic shocks. Finally, we inverted our previous method by taking velocities from the parabolic fits to give rough estimates of the percentage of mass lost by 12 of the macrospicules. We found that typically from 10 to 30% of their observed mass fades out of the line (presumably being heated to higher coronal temperatures) with three exceptions of 50% and one of 80%., Comment: Accepted for publication in A&A
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- 2016
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208. Solving generalized maximum-weight connected subgraph problem for network enrichment analysis
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Loboda, Alexander A., Artyomov, Maxim N., and Sergushichev, Alexey A.
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Computer Science - Data Structures and Algorithms - Abstract
Network enrichment analysis methods allow to identify active modules without being biased towards a priori defined pathways. One of mathematical formulations of such analysis is a reduction to a maximum-weight connected subgraph problem. In particular, in analysis of metabolic networks a generalized maximum-weight connected subgraph (GMWCS) problem, where both nodes and edges are scored, naturally arises. Here we present the first to our knowledge practical exact GMWCS solver. We have tested it on real-world instances and compared to similar solvers. First, the results show that on node-weighted instances GMWCS solver has a similar performance to the best solver for that problem. Second, GMWCS solver is faster compared to the closest analogue when run on GMWCS instances with edge weights.
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- 2016
209. Cardio-ML: Detection of malicious clinical programmings aimed at cardiac implantable electronic devices based on machine learning and a missing values resemblance framework
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Levy-Loboda, Tamar, Rav-Acha, Moshe, Katz, Amos, and Nissim, Nir
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- 2021
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210. Effect of Sleep-Disordered Breathing on Exercise Capacity after Myocardial Infarction — A Cross-Sectional Study
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Danuta Loboda, Michalina Stepanik, Jacek Durmala, Rafal Gardas, and Krzysztof S. Golba
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cardiac rehabilitation ,exercise capacity ,myocardial infarction ,obstructive sleep apnea ,sleep-disordered breathing ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background: Exercise capacity reflects the cardiovascular risk after myocardial infarction (MI). The study aims to evaluate the impact of sleep-disordered breathing (SDB) on exercise capacity after MI. Methods: Consecutive patients referring to outpatient cardiac rehabilitation up to 28 days after MI and participating in the Polish Managed Care after Acute Myocardial Infarction (MC-AMI) program were included. On admission, we assessed the presence and the severity of SDB using the home sleep apnea test (HSAT), patients’ maximum exercise capacity on a treadmill exercise stress test (EST), and a 6-minute walk test (6MWT), as well as the effect of SDB on the results obtained. In the multivariate analysis, we verified the strength of the observed associations concerning age, anthropometric parameters, and left ventricular ejection fraction (LVEF). Results: A total of 254 patients aged 60.00 (interquartile range 51.00–67.00), including 39 (15.4%) women, with technically adequate HSAT, constituted the study group. Mild SDB was found in 82 (32.3%), moderate in 54 (21.3%), and severe in 51 (20.1%) patients. Among those diagnosed with SDB, obstructive sleep apnea (OSA) was dominant in 167 (89.8%). With the worsening of SDB, the distance in 6MWT and the maximum physical exertion achieved in EST, expressed in metabolic equivalents (METs) and maximal heart rate (MHR), decreased. The linear regression analysis confirmed the following: (1) inversely proportional relationship between the respiratory event index and METs, MHR, and 6MWT distance (p = 0.005, p = 0.008, and p = 0.004), and the maximum apnea duration and MET and 6MWT distance (p = 0.042 and p = 0.002); and (2) directly proportional relationship between mean arterial oxygen saturation (SpO2) during sleep and MET, MHR, and 6MWT distance (p = 0.019, p = 0.006, and p = 0.013), and minimum SpO2 and MET and MHR (p = 0.040 and p < 0.001). However, the independent risk factors for impaired exercise capacity, determined using multivariable regression analysis, were age, female sex, higher body mass index (BMI), and decreased LVEF, but not SDB parameters. Conclusions: SDB negatively impacts exercise capacity after MI. However, the strength of this association may be less pronounced due to the interaction of risk factors common for SDB and impaired exercise capacity, e.g., sex, age, BMI, and LVEF.
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- 2023
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211. An Integrated Photoelasticity-Based Approach for the Reconstruction of Stress Profiles and Optical Anisotropy of GRIN Lenses
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Andrey A. Lipovskii, Dmitry I. Dolzhenko, Viktoria M. Kapralova, Dmitry D. Karov, Alexander S. Korotkov, Vera V. Loboda, Elizaveta A. Nikitina, Nicolay T. Sudar, and Valentina V. Zhurikhina
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GRIN lenses ,residual stresses ,integrated photoelasticity ,Applied optics. Photonics ,TA1501-1820 - Abstract
The paper shows that it is possible to obtain reliable information on the dependence of the radial distribution of longitudinal birefringence in glass cylindrical elements with a radial distribution of refractive index (GRIN lenses) on the basis of transverse polarization tomography data on residual stresses. This does not require complicated procedures of sample preparation, as is necessary in the case of longitudinal translucency measurements. The approach developed was verified in the experiments with a set of different GRIN lenses formed with the ion exchange technique, and the closeness of the data obtained from transversal and conventional longitudinal transmission measurements was demonstrated.
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- 2023
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212. Evaluation of water resources changes of the Mountain Dniester in 20th century following the RCP8.5 scenario and based on the 'climate-runoff' model
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N. S. Loboda, M. O. Kozlov, and І. V. Katynska
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impact of climate changes on water resources ,“climate-runoff” model ,climate scenarios ,the mountain dniester ,Meteorology. Climatology ,QC851-999 - Abstract
The relevance of the research consists in the need for evaluating the water resources changes of the Dniester due to global warming. The mountain part of the Dniester Basin is a zone of the river's runoff formation that determines its water content. The subject of research includes a process of climate changes and their impact on the water resources of the Mountain Dniester’s catchments. The research focuses on determining the water resources changes under current and possible future climatic conditions represented by climatic scenarios. The research aims at evaluating the water resources changes of the mountain part of the Dniester’s catchment area at the present and in the future by the mid-21 st century (2021-2050) based on the “climate-runoff” model using meteorological observations data (up to 2018 inclusive) and scenario data (averaged data based on 14 mathematical models of the CORDEX project, RCP8.5 scenario). During the research the resources of humidification, heat (heat equivalent) and water content for modern (1989-2018) and scenario (RCP8.5, 2021-2050) climatic conditions based on application of the "climate-runoff" model were evaluated. The theoretical basis for estimating the natural (undisturbed by water management) annual runoff in this model is represented by the water-heat balance equation. The meteorological characteristics (average monthly air temperatures and precipitation) serve as input data. The runoff calculated using the water-heat balance equation is called a climatic runoff. One of the peculiarities of the research consists in the use of the vertical zoning law with respect to distribution of runoff and climatic factors of its formation. During the comparative analysis the dependence of annual runoff norms on height of the Mountain Dniester’s terrain specified in modern regulatory documents served as a basic dependence. Such dependence reflects an altitude-dependant distribution of runoff for the climatic conditions that preceded the significant impact of global warming on air temperature (until 1989). The analysis of the dependences of average long-term values of the annual runoff depending on the terrain altitude showed that the runoff changes for two studied periods (before and after 1989) are within ±12,3%. The analysis of the graphs of chronological course of annual water flow of the mountain tributaries of the Dniester made it possible to confirm the absence of statistically significant trends in their fluctuations. According to the RCP8.5 climate scenario over the period of 2021-2050 and following the results of calculations based on the “climate-runoff” model, the dependences of the average long-term altitude-related values of climatic factors and climatic runoff were retrieved. It was found that the effects of global warming decrease with increasing altitude. In the foothills (up to 200 m) the annual precipitation decreases (up to 11%), the maximum possible evaporation increases (up to 17%) and water resources decrease (up to 46%). Heat resources cease to increase and water resources cease to reduce at the altitudes over 800 m. The average deviation of the scenario and baseline values for precipitation over the estimated period will amount to 2.41% for precipitation, 5.79% for maximum possible evaporation and 8.87% for water resources. Thus, reduction of water resources in the mountainous part of the Dniester by the mid-21 st century will be insignificant. When evaluating the current state of water resources of the Mountain Dniester no significant changes were discovered, thereby not contradicting the other authors’ data.
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- 2021
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213. Duchennova mišična distrofija – novosti pri diagnosticiranju in zdravljenju
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Tita Butenko, Tanja Loboda, Damjan Osredkar, Aleksandra Zver, Uroš Krivec, Primož Kotnik, Matjaž Homan, Mirko Topalović, Marko Pokorn, Katja Groleger Sršen, Petra Lešnik Musek, David Gosar, Alenka Piskar, and Tanja Golli
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duchennova mišična distrofija ,zdravljenje ,nove smernice ,izid ,Medicine - Abstract
Duchennova mišična distrofija (DMD) je najpogostejša in ena najresnejših mišičnih bolezni otroške dobe. Gre za na kromosom X vezano recesivno živčno-mišično bolezen, ki jo povzroča mutacija v genu za distrofin. Primarno prizadene skeletne mišice in srčno mišico. Pri večini dečkov se klinični znaki bolezni izrazijo z napredujočo mišično šibkostjo med 3. in 5. letom starosti. Mišična šibkost je bolj izražena v proksimalnih kot distalnih mišicah in v začetni fazi bolj vpliva na poslabšanje funkcije spodnjih kot zgornjih udov. Bolezen postopno napreduje. Pri nezdravljenih otrocih večinoma po 11. do 12. letu starosti vodi v takó resno zmanjšanje zmožnosti gibanja, da le-ti že za premagovanje krajših razdalj potrebujejo invalidski voziček. Napredujoča šibkost dihalnih mišic vodi v kronično dihalno odpoved in potrebo po pomoči pri predihavanju. Okvara funkcije srca je splošno prisotna, kajti po študijah so klinični znaki kardiomiopatije prisotni pri vseh bolnikih po 18. letu starosti. Na podlagi klinične slike diagnozo DMD potrdimo z laboratorijskimi in genetskimi preiskavami. V primeru negativnih rezultatov genetskih preiskav, a ob močnem kliničnem sumu za DMD, pa se za potrditev diagnoze poslužujemo mišične biopsije. Zdravljenje bolnikov z DMD zahteva multidisciplinarno obravnavo. Z uporabo kortikosteroidov (KS), fizioterapije, podpornega zdravljenja in opreme s pripomočki sta se življenjska doba in kakovost življenja bolnikov z DMD izboljšala. V fazi razvoja je več zdravil, katerih delovanje se usmerja v zmanjšanje okvare mišic, a tudi zdravil, ki bi odpravile osnovni, tj. genetski vzrok bolezni.
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- 2021
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214. IR thermography study of flow structure and parameters in diffusion flames
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Loboda, E.L., Matvienko, O.V., Agafontsev, M.V., Reyno, V.V., and Vavilov, V.P.
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- 2021
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215. Northern Eurasia Future Initiative (NEFI): facing the challenges and pathways of global change in the twenty-first century
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Groisman, Pavel, Shugart, Herman, Kicklighter, David, Henebry, Geoffrey, Tchebakova, Nadezhda, Maksyutov, Shamil, Monier, Erwan, Gutman, Garik, Gulev, Sergey, Qi, Jiaguo, Prishchepov, Alexander, Kukavskaya, Elena, Porfiriev, Boris, Shiklomanov, Alexander, Loboda, Tatiana, Shiklomanov, Nikolay, Nghiem, Son, Bergen, Kathleen, Albrechtová, Jana, Chen, Jiquan, Shahgedanova, Maria, Shvidenko, Anatoly, Speranskaya, Nina, Soja, Amber, de Beurs, Kirsten, Bulygina, Olga, McCarty, Jessica, Zhuang, Qianlai, and Zolina, Olga
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Life on Land ,Environmental changes ,Northern Eurasia ,Ecosystems dynamics ,Terrestrial water cycle ,Cryosphere retreat ,Extreme and inclement environmental conditions ,Sustainable development ,Land cover and land use change ,Integrated assessment models for decision-makers - Abstract
During the past several decades, the Earth system has changed significantly, especially across Northern Eurasia. Changes in the socio-economic conditions of the larger countries in the region have also resulted in a variety of regional environmental changes that can have global consequences. The Northern Eurasia Future Initiative (NEFI) has been designed as an essential continuation of the Northern Eurasia Earth Science Partnership Initiative (NEESPI), which was launched in 2004. NEESPI sought to elucidate all aspects of ongoing environmental change, to inform societies and, thus, to better prepare societies for future developments. A key principle of NEFI is that these developments must now be secured through science-based strategies co-designed with regional decision-makers to lead their societies to prosperity in the face of environmental and institutional challenges. NEESPI scientific research, data, and models have created a solid knowledge base to support the NEFI program. This paper presents the NEFI research vision consensus based on that knowledge. It provides the reader with samples of recent accomplishments in regional studies and formulates new NEFI science questions. To address these questions, nine research foci are identified and their selections are briefly justified. These foci include warming of the Arctic; changing frequency, pattern, and intensity of extreme and inclement environmental conditions; retreat of the cryosphere; changes in terrestrial water cycles; changes in the biosphere; pressures on land use; changes in infrastructure; societal actions in response to environmental change; and quantification of Northern Eurasia’s role in the global Earth system. Powerful feedbacks between the Earth and human systems in Northern Eurasia (e.g., mega-fires, droughts, depletion of the cryosphere essential for water supply, retreat of sea ice) result from past and current human activities (e.g., large-scale water withdrawals, land use, and governance change) and potentially restrict or provide new opportunities for future human activities. Therefore, we propose that integrated assessment models are needed as the final stage of global change assessment. The overarching goal of this NEFI modeling effort will enable evaluation of economic decisions in response to changing environmental conditions and justification of mitigation and adaptation efforts.
- Published
- 2017
216. IFN-γ–related mRNA profile predicts clinical response to PD-1 blockade
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Ayers, Mark, Lunceford, Jared, Nebozhyn, Michael, Murphy, Erin, Loboda, Andrey, Kaufman, David R, Albright, Andrew, Cheng, Jonathan D, Kang, S Peter, Shankaran, Veena, Piha-Paul, Sarina A, Yearley, Jennifer, Seiwert, Tanguy Y, Ribas, Antoni, and McClanahan, Terrill K
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Genetics ,Cancer ,Clinical Research ,Aetiology ,2.1 Biological and endogenous factors ,Antibodies ,Monoclonal ,Humanized ,Antineoplastic Agents ,B7-H1 Antigen ,Biopsy ,Carcinoma ,Carcinoma ,Non-Small-Cell Lung ,Gene Expression Profiling ,Gene Expression Regulation ,Neoplastic ,Humans ,Immune System ,Immunohistochemistry ,Interferon-gamma ,Lung Neoplasms ,Melanoma ,Pilot Projects ,Programmed Cell Death 1 Receptor ,ROC Curve ,Sequence Analysis ,RNA ,Signal Transduction ,Skin Neoplasms ,Stomach Neoplasms ,Treatment Outcome ,Tumor Microenvironment ,Medical and Health Sciences ,Immunology - Abstract
Programmed death-1-directed (PD-1-directed) immune checkpoint blockade results in durable antitumor activity in many advanced malignancies. Recent studies suggest that IFN-γ is a critical driver of programmed death ligand-1 (PD-L1) expression in cancer and host cells, and baseline intratumoral T cell infiltration may improve response likelihood to anti-PD-1 therapies, including pembrolizumab. However, whether quantifying T cell-inflamed microenvironment is a useful pan-tumor determinant of PD-1-directed therapy response has not been rigorously evaluated. Here, we analyzed gene expression profiles (GEPs) using RNA from baseline tumor samples of pembrolizumab-treated patients. We identified immune-related signatures correlating with clinical benefit using a learn-and-confirm paradigm based on data from different clinical studies of pembrolizumab, starting with a small pilot of 19 melanoma patients and eventually defining a pan-tumor T cell-inflamed GEP in 220 patients with 9 cancers. Predictive value was independently confirmed and compared with that of PD-L1 immunohistochemistry in 96 patients with head and neck squamous cell carcinoma. The T cell-inflamed GEP contained IFN-γ-responsive genes related to antigen presentation, chemokine expression, cytotoxic activity, and adaptive immune resistance, and these features were necessary, but not always sufficient, for clinical benefit. The T cell-inflamed GEP has been developed into a clinical-grade assay that is currently being evaluated in ongoing pembrolizumab trials.
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- 2017
217. Thermal dependent properties of LaB6–MeB2 eutectic composites
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Soloviova, T.O., Karasevska, O.P., Vleugels, J., and Loboda, P.I.
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- 2021
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218. Satellite Observations and Malaria: New Opportunities for Research and Applications
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Wimberly, Michael C., de Beurs, Kirsten M., Loboda, Tatiana V., and Pan, William K.
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- 2021
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219. Spatio-temporal patterns of optimal Landsat data for burn severity index calculations: Implications for high northern latitudes wildfire research
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Chen, Dong, Fu, Cheng, Hall, Joanne V., Hoy, Elizabeth E., and Loboda, Tatiana V.
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- 2021
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220. Identification of coherent structures downstream of patches of aquatic vegetation in a natural environment
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Przyborowski, Łukasz and Łoboda, Anna Maria
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- 2021
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221. Mapping fire-impacted refugee camps using the integration of field data and remote sensing approaches
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Mohammad Mehedy Hassan, Ikramul Hasan, Jane Southworth, and Tatiana Loboda
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Refugee camp ,Fire severity ,Fractional char index ,Spectral indices ,Sentinel-2 ,Physical geography ,GB3-5030 ,Environmental sciences ,GE1-350 - Abstract
The impacts of fires on society and the environment are wide-ranging, and examining such fire incidents is of critical importance to communities, governments, and scientists. Satellite imagery analysis enables the monitoring of burned scars and can help us better understand the social, ecological, and economic consequences of fires in more detail. However, most satellite studies measuring fire area and impacts focus on large areas in natural landscapes, typically forests. We highlight the need to develop methods for fire detection and analysis in human-dominated landscapes, specifically, such vulnerable populations as those found in refugee camps globally. We calculate a suite of spectral indices (SI’s) developed from Sentinel-2 data with a random forest algorithm to quantify the fire impact on the Rohingya refugee camps in Teknaf, Bangladesh. For this study, we developed a method called the Fractional Charred Index (FCI) using the field plots within the burn areas inside the refugee camp settlements and compared the FCI with differenced Spectral Indices (dSI’s) to quantitively assess the burn severity at four levels: (i) high severity, (ii) moderate severity, (iii) low severity and (iv) unburned camp. Our study identified 140 acres of burn area, damaging over 8,000 refugee shelters, 1,760 of which were severely damaged and 3,452 of which suffered moderate damage. The FCI-dSIs relationship was measured by a simple linear model which indicated that the differenced Normalized Burned Index (dNBR) and the differenced Char Soil Index (dCSI) have the strongest positive correlation and can be used interchangeably to assess the scale and intensity of the fire-caused damage and fire severity assessment in this and similar types of case studies. The novel method presented here to determine fire severity in human-dominated landscapes, specifically refugee camps, may be quickly deployed and is easily interpretable and computationally inexpensive. Therefore, the proposed method of identifying burned settlements in refugee camps has significant potential for impact monitoring, disaster management, and recovery efforts after such fire events.
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- 2022
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222. Ionization balance of non-LTE plasmas from an average-atom collisional-radiative model
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A. A. Ovechkin, P. A. Loboda, A. S. Korolev, S. V. Kolchugin, I. Yu. Vichev, A. D. Solomyannaya, D. A. Kim, and A. S. Grushin
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Nuclear and particle physics. Atomic energy. Radioactivity ,QC770-798 - Abstract
We present a simplified version of an average-atom collisional-radiative model employing both local-thermodynamic-equilibrium average-atom and isolated-ion atomic data. The simplifications introduced do not lead to any substantial errors, and they significantly speed up calculations compared with the basic average-atom model involving direct solution of the self-consistent-field equations. Average ion charges, charge state distributions, and emission spectra of non-local-thermodynamic-equilibrium (NLTE) gold plasmas calculated using various modifications of the average-atom collisional-radiative model are compared with those obtained using the THERMOS model with the detailed configuration accounting approach. We also propose an efficient method to calculate thermodynamic functions of NLTE plasmas in the context of the simplified average-atom collisional-radiative model.
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- 2022
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223. Recontacting biobank participants to collect lifestyle, behavioural and cognitive information via online questionnaires: lessons from a pilot study within FinnGen
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Oskari Heikinheimo, Athena Matakidou, Jaakko Kaprio, Ying Wu, Kai Kaarniranta, Peeter Karihtala, Wei Zhou, Caroline Fox, Sarah Smith, Apinya Lertratanakul, Katri Kaukinen, Johannes Kettunen, Eeva Sliz, Markus Perola, Veikko Salomaa, Hilkka Soininen, Ilkka Kalliala, Mika Kähönen, Hao Chen, Andrey Loboda, Laure Morin-Papunen, Terhi Piltonen, Anders Mälarstig, Jason Miller, Jussi Hernesniemi, Henrike Heyne, Sirkku Peltonen, Daniel Gordin, Masahiro Kanai, Benjamin Challis, Juha Sinisalo, David Rice, Fredrik Åberg, Aarno Palotie, Samuli Ripatti, Oili Kaipiainen-Seppänen, Aki Havulinna, Satu Strausz, Tuomo Kiiskinen, Sanni Ruotsalainen, Jukka Koskela, Tuula Palotie, Mark Daly, Howard Jacob, Heiko Runz, Sally John, Robert Plenge, Mark McCarthy, Julie Hunkapiller, Dawn Waterworth, Petri Virolainen, Terhi Kilpi, Jukka Partanen, Anne Pitkäranta, Veli-Matti Kosma, Outi Tuovila, Raimo Pakkanen, Shameek Biswas, Xinli Hu, Johanna Schleutker, Mikko Arvas, Olli Carpen, Reetta Hinttala, Arto Mannermaa, Valtteri Julkunen, Anne Remes, Reetta Kälviäinen, Mikko Hiltunen, Jukka Peltola, Pentti Tienari, Juha Rinne, Adam Ziemann, Jeffrey Waring, Nizar Smaoui, Anne Lehtonen, Susan Eaton, Sanni Lahdenperä, Natalie Bowers, Edmond Teng, Fanli Xu, David Pulford, Martti Färkkilä, Sampsa Pikkarainen, Airi Jussila, Timo Blomster, Mikko Kiviniemi, Markku Voutilainen, Fedik Rahimov, Joseph Maranville, Tim Lu, Kirsi Kalpala, Melissa Miller, Linda McCarthy, Kari Eklund, Antti Palomäki, Pia Isomäki, Laura Pirilä, Johanna Huhtakangas, Marla Hochfeld, Nan Bing, Jorge Esparza Gordillo, Nina Mars, Tarja Laitinen, Margit Pelkonen, Paula Kauppi, Hannu Kankaanranta, Terttu Harju, Hubert Chen, Teemu Niiranen, Kaj Metsärinne, Marja-Riitta Taskinen, Tiinamaija Tuomi, Jari Laukkanen, Audrey Chu, Jaakko Parkkinen, Heikki Joensuu, Tuomo Meretoja, Lauri Aaltonen, Annika Auranen, Päivi Auvinen, Klaus Elenius, Relja Popovic, Jennifer Schutzman, Heli Lehtonen, Stefan McDonough, Diptee Kulkarni, Terhi Ollila, Hannu Uusitalo, Erich Strauss, Kaisa Tasanen, Laura Huilaja, Katariina Hannula-Jouppi, Teea Salmi, Leena Koulu, David Choy, Anu Jalanko, Risto Kajanne, Mari Kaunisto, Chia-Yen Chen, Robert Yang, Kirsi Auro, Clement Chatelain, Mitja Kurki, Juha Karjalainen, Kimmo Palin, Priit Palta, Susanna Lemmelä, Manuel Rivas, Arto Lehisto, Andrea Ganna, Vincent Llorens, Kati Kristiansson, Kati Hyvärinen, Jarmo Ritari, Katri Pylkäs, Minna Karjalainen, Tuomo Mantere, Eeva Kangasniemi, Sami Heikkinen, Eija Laakkonen, Anu Loukola, Päivi Laiho, Tuuli Sistonen, Essi Kaiharju, Markku Laukkanen, Elina Järvensivu, Sini Lähteenmäki, Lotta Männikkö, Regis Wong, Hannele Mattsson, Kati Donner, Kalle Pärn, Elina Kilpeläinen, Hannele Laivuori, Harri Siirtola, Lila Kallio, Sirpa Soini, Teijo Kuopio, Ioanna Tachmazidou, Katja Kivinen, Pekka Nieminen, Adam Platt, Sanna Toppila-Salmi, Antti Mäkitie, Elmo Saarentaus, Kristiina Aittomäki, Elisabeth Widen, Marja Vääräsmäki, Erkki Isometsä, Jari Lahti, Laura Addis, Taneli Raivio, Mart Kals, Majd Mouded, Hanna Ollila, Vuokko Anttonen, Robert Graham, Amanda Elliott, Ali Abbasi, Bridget Riley-Gills, Dirk Paul, Katherine Klinger, Deepak Raipal, Antti Hakanen, Raisa Serpi, Johanna Mäkelä, Mengzhen Liu, Neha Raghavan, Adriana Huertas-Vazquez, Nicole Renaud, Roosa Kallionpää, John Eicher, Minna Raivio, Juulia Partanen, Riitta Lahesmaa, Glenda Lassi, Joanna Betts, Rajashree Mishra, Felix Vaura, Joel Rämö, Mary Pat Reeve, Johanna Mattson, Sauli Vuoti, Esa Pitkänen, Joni A Turunen, Stephanie Loomis, Pirkko Pussinen, Aino Salminen, Tuula Salo, Ulla Palotie, Maria Siponen, Liisa Suominen, Päivi Mäntylä, Ulvi Gursoy, Kirsi Sipilä, Venla Kurra, Laura Kotaniemi-Talonen, Outi Uimari, Taru Tukiainen, Niko Välimäki, Janet Kumar, Juha Mehtonen, Shabbeer Hassan, Pietro Della Briotta Parolo, Mutaamba Maasha, Javier Garcia-Tabuenca, Jiwoo Lee, Kristin Tsuo, Nina Pitkänen, Eero Punkka, Huei-Yi Shen, Mervi Aavikko, L. Elisa Lahtela, Timo P. Sipilä, Awaisa Ghazal, Sami Koskelainen, Teemu Paajanen, Shuang Luo, Tiina Luukkaala, Iida Vähätalo, Tero Jyrhämä, Marco Hautalahti, Tom Southerington, Jaana Suvisaari, Zhihao Ding, Qingqin S Li, Amy Hart, Rodosthenis S Rodosthenous, Mari E K Niemi, Merja Perala, Perttu Terho, Theresa Knopp, Enni M Makkonen, Paula Nurmi, Pauli Wihuri, Corianna Moffatt, Paolo Martini, Laura Germine, Viola A Makela, Oona A Karhunen, Tero S Hiekkalinna, Alessandro Porello, Anastasia Kytölä, Antti Aarnisalo, Aoxing Liu, Argyro Bizaki-Vallaskangas, Auli Toivola, Debby Ngo, Dermot Reilly, Ekaterina Khramtsova, Elisa Rahikkala, Eric Green, Eveliina Salminen, Fabiana Farias, George Okafo, Heidi Silven, Heli Salminen-Mankonen, Henna Palin, Iiris Hovatta, Jaakko Tyrmi, Jae-Hoon Sul, Jenni Aittokallio, Jyrki Pitkänen, Karen He, Katriina Aalto-Setälä, Maarit Niinimäki, Malla-Maria Linna, Marc Jung, Margaret G. Ehm, Marianna Niemi, Meijian Guan, Mike Mendelson, Minna Brunfeldt, Natalia Pujol, Nathan Lawless, Oluwaseun Alexander Dada, Rigbe Weldatsadik, Riikka Arffman, Rion Pendergrass, Sahar Mozaffari, Samuel Lessard, Sanna Siltanen, Shanmukha Sampath Padmanabhuni, Simonne Longerich, Susanna Savukoski, Thomas Damm Als, Timo Hiltunen, Tomi P. Mäkelä, Triin Laisk, Tytti Willberg, and Varpu Jokimaa
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Medicine - Abstract
Objectives To recontact biobank participants and collect cognitive, behavioural and lifestyle information via a secure online platform.Design Biobank-based recontacting pilot study.Setting Three Finnish biobanks (Helsinki, Auria, Tampere) recruiting participants from February 2021 to July 2021.Participants All eligible invitees were enrolled in FinnGen by their biobanks (Helsinki, Auria, Tampere), had available genetic data and were >18 years old. Individuals with severe neuropsychiatric disease or cognitive or physical disabilities were excluded. Lastly, 5995 participants were selected based on their polygenic score for cognitive abilities and invited to the study. Among invitees, 1115 had successfully participated and completed the study questionnaire(s).Outcome measures The primary outcome was the participation rate among study invitees. Secondary outcomes included questionnaire completion rate, quality of data collected and comparison of participation rate boosting strategies.Results The overall participation rate was 18.6% among all invitees and 23.1% among individuals aged 18–69. A second reminder letter yielded an additional 9.7% participation rate in those who did not respond to the first invitation. Recontacting participants via an online healthcare portal yielded lower participation than recontacting via physical letter. The completion rate of the questionnaire and cognitive tests was high (92% and 85%, respectively), and measurements were overall reliable among participants. For example, the correlation (r) between self-reported body mass index and that collected by the biobanks was 0.92.Conclusion In summary, this pilot suggests that recontacting FinnGen participants with the goal to collect a wide range of cognitive, behavioural and lifestyle information without additional engagement results in a low participation rate, but with reliable data. We suggest that such information be collected at enrolment, if possible, rather than via post hoc recontacting.
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- 2022
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224. Quiescent and Eruptive Prominences at Solar Minimum: A Statistical Study via an Automated Tracking System
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Loboda, I. P. and Bogachev, S. A.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
We employ an automated detection algorithm to perform a global study of solar prominence characteristics. We process four months of TESIS observations in the He II 304 A line taken close to the solar minimum of 2008-2009 and focus mainly on quiescent and quiescent-eruptive prominences. We detect a total of 389 individual features ranging from 25x25 to 150x500 Mm in size and obtain distributions of many their spatial characteristics, such as latitudinal position, height, size and shape. To study their dynamics, we classify prominences as either stable or eruptive and calculate their average centroid velocities, which are found to be rarely exceeding 3 km/s. Besides, we give rough estimates of mass and gravitational energy for every detected prominence and use these values to evaluate the total mass and gravitational energy of all simultaneously existing prominences (10e12-10e14 kg and 10e29-10e31 erg, respectively). Finally, we investigate the form of the gravitational energy spectrum of prominences and derive it to be a power-law of index -1.1 +- 0.2.
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- 2015
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225. Inductive hyperthermia planning for patients with breast cancer metastasis to lymph nodes
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O. I. Mokhonko, V. E. Orel, I. I. Smolanka (Sr.), L. A. Syvak, A. D. Loboda, I. V. Dosenko, A. O. Lyashenko, I. I. Smolanka (Jr.), O. Yu. Rykhalskyi, V. B. Orel, O. I. Dasyukevich, T. Ye. Tarasenko, and S. I. Vovyanko
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inductive hyperthermia ,breast cancer ,metastasis ,lymph nodes ,computer planning. ,Atomic physics. Constitution and properties of matter ,QC170-197 - Abstract
Inductive hyperthermia treatment plans were built using Comsol Multiphysics software for patients with breast cancer metastasis to lymph nodes. To assess the influence of electromagnetic irradiation on temperature increase in metastatic lymph nodes, treatment plans were based on moderate hyperthermia parameters (< 42 °C). The proposed technology can be used to provide a more personalized approach to treatment planning for patients with locally advanced breast cancer receiving combination therapy which involves neoadjuvant chemotherapy and expand eligibility for organ-preserving surgery.
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- 2021
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226. Children and young adults with spinal muscular atrophy treated with nusinersen
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Osredkar, Damjan, Jílková, Markéta, Butenko, Tita, Loboda, Tanja, Golli, Tanja, Fuchsová, Petra, Rohlenová, Marie, and Haberlova, Jana
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- 2021
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227. Adaptive skills and mental health in children and adolescents with neuromuscular diseases
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Gosar, David, Košmrlj, Lejla, Musek, Petra Lešnik, Meško, Tamara, Stropnik, Staša, Krkoč, Vesna, Golli, Tanja, Butenko, Tita, Loboda, Tanja, and Osredkar, Damjan
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- 2021
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228. The Western Steppic Rivers
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Sukhodolov, Alexander N., primary, Shumilova, Oleksandra O., additional, Loboda, Nataliya S., additional, Katolikov, Viktor M., additional, Arnaut, Nikolas A., additional, Bekh, Vitali V., additional, Usatii, Marin A., additional, Kudersky, Leonid A., additional, and Skakalsky, Boris G., additional
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- 2022
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229. List of contributors
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Andrianov, Igor, primary, Ashimov, Yeskendyr, additional, Cherkaev, Andrej, additional, Czapla, Roman, additional, Dalla Riva, Matteo, additional, Drygaś, Piotr, additional, Espinosa-Almeyda, Yoanh, additional, Farinelli, Simone, additional, Filshtinsky, Leonid, additional, Giorgadze, Gia, additional, Gluzman, Simon, additional, Godin, Yuri A., additional, Kanaun, Sergei, additional, Kaplunov, Julius, additional, Khimshiashvili, Giorgi, additional, Kolpakov, Alexander G., additional, Kurpa, Lidiya, additional, Loboda, Volodymyr, additional, Luzzini, Paolo, additional, Markov, Anatoly, additional, Mityushev, Vladimir, additional, Musolino, Paolo, additional, Mykhail, Oleksandr, additional, Nawalaniec, Wojciech, additional, Nosov, Dmytro, additional, Otero, José A., additional, Prikazchikova, Ludmila, additional, Pukhtaievych, Roman, additional, Rakin, Sergei I., additional, Rodríguez-Ramos, Reinaldo, additional, Rylko, Natalia, additional, Sabina, Federico J., additional, Shamsi, Sheeru, additional, Sheveleva, Alla, additional, Shmatko, Tetyana, additional, Takada, Hideyuki, additional, Topol, Heiko, additional, Vainberg, Boris, additional, Vigdorowitsch, Michael, additional, Wojnar, Ryszard, additional, Yanes, Victor, additional, Yukalov, Vyacheslav, additional, Yukalova, Elizaveta, additional, and Zhunussova, Zhanat, additional
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- 2022
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230. A slipping zone model for a conducting interface crack in a piezoelectric bimaterial
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Loboda, Volodymyr, primary, Sheveleva, Alla, additional, and Mykhail, Oleksandr, additional
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- 2022
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231. Optimization Calculation of Thermoelement Linear Dimensions for Microthermoelectric Generator.
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Vera Loboda and Roman Buslaev
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- 2020
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232. Studying dynamic mathematics software in the professional training of teachers of computer science, mathematics, and IT specialists.
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I. V. Shishenko, Volodymyr H. Shamonia, V. S. Loboda, V. V. Punko, Yu. V. Khvorostina, and A. A. Voitenko
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- 2020
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233. Study of the Correlations Between the Dynamics of Thermal Destruction and the Morphological Parameters of Biogenic Calcites by the Method of Thermoprogrammed Desorption Mass Spectrometry (TPD-MS)
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Bordunova, O. G., Loboda, V. B., Samokhina, Y. A., Chernenko, O. M., Dolbanosova, R. V., Chivanov, V. D., Pogrebnjak, Alexander D., editor, and Bondar, Oleksandr, editor
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- 2020
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234. Magneto-Optical and Magnetic Properties of Three-Layer Films Based on Permalloy and Copper
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Loboda, V. B., Shkurdoda, Yu. O., Shabelnyk, Yu. M., Chornous, A. M., Khursenko, S. M., Dekhtyaruk, L. V., Merkotan, K., Drozdenko, O. O., Pogrebnjak, Alexander D., editor, and Bondar, Oleksandr, editor
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- 2020
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235. Mongols on the Don: Recreating Lost Historical Context by Scientific Methods
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Leonova, N. V., Shishlina, N. I., Loboda, A. Yu., and Soloshenko, N. G.
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- 2021
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236. Study of Organic Residues on the Surface of Ceramic Fragments of Medieval Crimea
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Pozhidaev, V. M., Kamaev, A. V., Loboda, A. Yu., Khairedinova, E. A., Aibabin, A. I., and Yatsishina, E. B.
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- 2021
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237. Electron Microscopic Study of Metal Threads from a Slab Grave on the Eski-Kermen Plateau
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Loboda, A. Yu., Antipenko, A. V., Mandrykina, A. V., Khairedinova, E. A., Tereschenko, E. Yu., Aibabin, A. I., and Yatsishina, E. B.
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- 2021
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238. On the Sources of Metals and Alloys for Making Silver Jewelry in Taurica in Roman Times
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Antipenko, A. V., Smekalova, T. N., and Loboda, A. Yu.
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- 2021
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239. Technological Features and Chronology of Metal Sickles of the Volga Region of the Late Bronze Age
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Shishlina, N. I. and Loboda, A. Yu.
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- 2021
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240. Ancient Russian Niello: Experimental Modeling and Research of the Microstructure
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Loboda, A. Yu., Mandrykina, A. V., Zaitseva, I. E., Tereschenko, E. Yu., and Yatsishina, E. B.
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- 2021
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241. The Effect of Cold Isostatic Pressing of Powder Billets Produced from the VK8 Hardmetal on its Hardness and Phase Composition After Sintering
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Akimov, G. Ya., Andreev, I.V., Loboda, P.I., Trosnikova, I. Yu., Sheremet, V.I., Novokhatska, A.O., and Melakh, L.M.
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- 2021
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242. Sleep-disordered breathing does not directly affect early cardiac rehabilitation efficacy after myocardial infarction.
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Loboda, Danuta, Stepanik, Michalina, Durmala, Jacek, Gardas, Rafal, and Golba, Krzysztof S.
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- 2024
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243. How far are we? Assessing progress in hepatitis C response towards the WHO 2030 elimination goals by the civil society monitoring in 25 European countries, period 2020 to 2023.
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Maticic, Mojca, Cernosa, J., Loboda, C., Tamse, J., Rigoni, R., Duffell, E., Indave, I., Zimmermann, R., Darragh, L., Moura, J., Leicht, A., Windelinckx, T., Jauffret-Roustide, M., Schiffer, K., and Tammi, T.
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HEPATIC fibrosis ,HEPATITIS C virus ,HARM reduction ,COMMUNITY centers ,CITIES & towns - Abstract
Background: With the advent of direct acting antivirals (DAAs) the World Health Organisation (WHO) adopted global strategy to eliminate hepatitis C virus (HCV) infection by 2030. In Europe, people who inject drugs (PWID) account for the majority of new cases, however testing and treatment remain suboptimal. The aim was to monitor progress in HCV policy and cascade-of-care for PWID, led by the civil society organisations (CSO) that provide harm reduction services for PWID across Europe. Methods: In period 2020–2023, CSOs representing focal points of Correlation-European Harm Reduction Network were annually invited to complete online questionnaire on use/impact of HCV test-and-treat guidelines for PWID, availability/functioning of continuum-of-care, and role/limitations of harm reduction services for PWID. A retrospective longitudinal analysis of responses to questions answered each year by the same respondents was performed, and a comparison among the studied years was made. Results: Twenty-five CSOs from cities in 25 European countries were included and responded to 25 questions. Between 2020 and 2023, there was positive trend in number of HCV treatment guidelines, separate guidelines for PWID, and their positive impact on acess to testing/treatment (24/25, 5/25, and 16/25 in 2023, respectively). DAAs were available in all countries, predominantly prescribed by specialist physicians only (slight increase at primary care), with restrictions including active drug use, stage of liver fibrosis or/and reimbursement policies (2/25, 4/25, and 3/25 in 2023, respectively). A decrease in HCV testing sites was noted. Treatment was consistently most common at clinical settings, however an increase outside the specialist settings was detected, particularly in prisons (12/25 and 15/25 in 2020–2021, respectively). Comparing 2022–2023, number of HCV-testing services increased in many cities with positive dynamic in nearly all the settings; increase in treatment at harm reduction services/community centres was noted (6/25 to 8/25, respectively). Between 2020 and 2023 the frequency of various limitations to CSOs addressing HCV was oscillating, presenting an increase between 2022 and 2023 (9/25 to 14/25, respectively). Conclusion: The overall progress towards WHO HCV elimination goals across Europe remains insufficient, most probably also due to the influence of Covid-19 pandemic. Further improvements are needed, also by including CSOs for PWID in continuum-of-care services, and in monitoring progress. [ABSTRACT FROM AUTHOR]
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- 2024
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244. Case report: A case study of variant calling pipeline selection effect on the molecular diagnostics outcome.
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Skitchenko, Rostislav, Smirnov, Sergey, Krapivin, Mikhail, Smirnova, Anna, Artomov, Mykyta, Loboda, Alexander, and Dinikina, Yulia
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MEDICAL genetics ,PEDIATRIC oncology ,NUCLEOTIDE sequencing ,MOLECULAR diagnosis ,MEDICAL decision making - Abstract
Next-generation sequencing technologies have not only defined a breakthrough in medical genetics, but also been able to enter routine clinical practice to determine individual genetic susceptibilities. Modern technological developments are routinely introduced to genetic analysis overtaking the established approaches, potentially raising a number of challenges. To what extent is the advantage of new methodologies in synthetic metrics, such as precision and recall, more important than stability and reproducibility? Could differences in the technical protocol for calling variants be crucial to the diagnosis and, by extension, the patient's treatment strategy? A regulatory review process may delay the incorporation of potentially beneficial technologies, resulting in missed opportunities to make the right medical decisions. On the other hand, a blind adoption of new technologies based solely on synthetic metrics of precision and recall can lead to incorrect conclusions and adverse outcomes for the specific patient. Here, we use the example of a patient with a WHO-diagnosed desmoplastic/nodular SHH-medulloblastoma to explore how the choice of DNA variant search protocol affects the genetic diagnostics outcome. [ABSTRACT FROM AUTHOR]
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- 2024
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245. Development and Application of Reversible and Irreversible Covalent Probes for Human and Mouse Cathepsin‐K Activity Detection, Revealing Nuclear Activity.
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Dey, Gourab, Sinai‐Turyansky, Reut, Yakobovich, Evalyn, Merquiol, Emmanuelle, Loboda, Jure, Sridharan, Nikhila, Houri‐Haddad, Yael, Polak, David, Yona, Simon, Turk, Dusan, Wald, Ori, and Blum, Galia
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DENTAL implants ,BONE remodeling ,DRUG development ,EXTRACELLULAR matrix ,IMMUNE response - Abstract
Cathepsin‐K (CTSK) is an osteoclast‐secreted cysteine protease that efficiently cleaves extracellular matrices and promotes bone homeostasis and remodeling, making it an excellent therapeutic target. Detection of CTSK activity in complex biological samples using tailored tools such as activity‐based probes (ABPs) will aid tremendously in drug development. Here, potent and selective CTSK probes are designed and created, comparing irreversible and reversible covalent ABPs with improved recognition components and electrophiles. The newly developed CTSK ABPs precisely detect active CTSK in mouse and human cells and tissues, from diseased and healthy states such as inflamed tooth implants, osteoclasts, and lung samples, indicating changes in CTSK's activity in the pathological samples. These probes are used to study how acidic pH stimulates mature CTSK activation, specifically, its transition from pro‐form to mature form. Furthermore, this study reveals for the first time, why intact cells and cell lysate exhibit diverse CTSK activity while having equal levels of mature CTSK enzyme. Interestingly, these tools enabled the discovery of active CTSK in human osteoclast nuclei and in the nucleoli. Altogether, these novel probes are excellent research tools and can be applied in vivo to examine CTSK activity and inhibition in diverse diseases without immunogenicity hazards. [ABSTRACT FROM AUTHOR]
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- 2024
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246. Artificial intelligence for predicting mortality in hospitalized COVID-19 patients.
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Korsakov, Igor N., Karonova, Tatiana L., Mikhaylova, Arina A., Loboda, Alexander A., Chernikova, Alyona T., Mikheeva, Anna G., Sharypova, Marina V., Konradi, Alexandra O., and Shlyakhto, Evgeny V.
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- 2024
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247. Assessment of runoff characteristics changes of the left bank tributaries of the Upper Dniester under warming conditions
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S. V. Melnyk and N. S. Loboda
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left bank of the upper dniester ,climate changes ,changes in the characteristics of annual ,maximum and minimum runoff ,Meteorology. Climatology ,QC851-999 - Abstract
The inflow of water from the left-bank tributaries of the Upper Dniester is an important component of the runoff formation for the whole river. The study of changes in their water content in the context of global warming is quite urgent and agrees with the provisions of the strategic programme for the Dniester Basin for 2021-2035 aimed at ‘climate change mitigation’ and ‘promoting the principles of sustainable water management’. The paper's objective is to carry out a research into the changes in climatic factors and runoff characteristics that occurred on the left bank of the Upper Dniester in the early 21st century. The research was performed on the basis of hydrometeorological data for the period of 1945-2018. The main research methods include the regression analysis and the method of differential integral curves. It is found that, within the area under study, there is an increase in average annual air temperatures against the background of constant or insignificantly increasing amounts of annual precipitation, thus creating unsatisfactory conditions for runoff formation. It is established that, during the months of cold period, there is an increase in air temperature and that since 1989 the frequency of cases, when the temperature crosses the range of positive values, keeps increasing. 1989 is a turning point in the chronological course of average annual air temperatures; a positive phase of long-term fluctuations starts since that year. With regard to annual precipitation fluctuations from the mid-60s of the last century up to 2013, a positive phase was also identified; within this phase there was a short period of insufficient moisture (1981-1996). It was found that the response of runoff characteristics to climate change was not the same. Maximum runoff during the spring flood is the most sensitive to global warming, since such warming has worsened the conditions for accumulation of water reserves in the snow cover. The transition of maximum runoff fluctuations to the low-water phase took place in 1981. The average long-term decrease in the maximum water flow rates during the spring flood for the period of 1950-2018 amounts to -16.9%. Unlike maximum runoff, the characteristics of the annual and minimum runoff changed gradually during the winter and summer low-water periods and the final transition to the low-water phase of fluctuations occurred only in 2009-2011. Certain inertia of changes in the water resources of Podillya rivers under the warming conditions is caused by the subsurface component making a high contribution to the annual runoff formation (60%). Significant portion of the groundwater supply ‘mitigated’ the effects of surface runoff loss during spring floods. The research allowed establishing the occurrence of statistically significant negative trends in the annual and minimum runoff fluctuations since 1998. If continue to preserve, the identified climate change trends will decrease the inflow of water from the Podillya rivers to the main Dniester River.
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- 2021
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248. INFLUENCE OF THYROID HORMONES AND CORTISOL ON IMMUNE RESPONSE IN CASE OF CHILDREN’S BRONCHOPULMONARY DISEASES
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Oleksandr Smiyan, Andriy Loboda, Anastasiia Havrylenko, Tatiana Bynda, Sergey Popov, Yurii Reznychenko, Olena Vasylieva, Viktoriia Petrashenko, Petro Sichnenko, Kateryna Smiian, Yuliia Man’ko, Iryna Shkolna, Tatiana Aleksakhina, and Yuliia Syadrista
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children, bronchopulmonary diseases, euthyroid sick syndrome, hormones, triiodothyronine, thyroxine, cortisol, immunity ,Medicine (General) ,R5-920 - Abstract
The problem of acute respiratory tract infections (including acute bronchitis) remains urgent in the whole world independent of human age, especially when disease rates are considered. The World Health Organization reports annually on 1.5 billion cases of acute respiratory diseases. In Ukraine, the disease rate is 3.6 times higher among children than among adults (totally, it is equal to 67,000 cases per 100,000 individuals). The highest rate is observed among under-6-year-old children. In contrast to the average bronchopulmonary disease rate in Europe, the same Ukrainian index remains slightly higher for the last decades. Among children, the acute bronchitis rate is 6.2–25.0% within all bronchopulmonary diseases, reaching 50.0–90.0% if there are recurrences. Our literature review aims to compare different researchers’ perspectives, selecting articles and analyzing data as to how thyroid hormones and cortisol influence immune response in children’s bronchopulmonary diseases. In the literature review, the modern perspective of children’s hormonal state in bronchopulmonary diseases is studied. The hypothalamus-hypophysis-thyroid and hypothalamus-hypophysis-paranephros interaction roles in bronchopulmonary adaptive responses are explained. The thyroid hormone and cortisol importance for organism resistance are regarded. The manifestation, pathogenetic progress mechanisms, diagnosing methods, and treatment of different subclinical hormonal shifts (particularly euthyroid sick syndrome) are researched. The interconnection of hormonal and immunological indicators is covered (whose change is a predictively significant marker – that can foresee the disease progress, its duration and consequences for patients). Therefore, the relevance consists in researching the influence of thyroid hormones and cortisol on immune response by different pathological states of children’s bronchopulmonary diseases.
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- 2021
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249. Awareness assessment for viral hepatitis among patients in different departments of medical institutions and students.
- Author
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A. M. Loboda, N. G. Malysh, O. K. Melekhovets, O. M. Chemych, V. I. Mogylenko, and D. V. Osypko
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chronic viral hepatitis c ,chronic viral hepatitis b ,sociological survey ,questionnaire ,Education ,Sports ,GV557-1198.995 ,Medicine - Abstract
The significant spread of chronic viral hepatitis in Ukraine and the whole world, an increase in the incidence of medical personnel, and the lack of wariness of the population regarding the diseases of this group make it necessary to have a statistical analysis of the etiology, diagnosis, treatment, and prevention of viral hepatitis among different population groups.Aim. To study and analyze the awareness about viral hepatitis B (HBV) and C (HCV) of patients who undergo treatment in various departments (infectious, surgical, therapeutic) and the students who didn't take the course of infectious diseases.Materials and methods. A questionnaire was developed to establish the level of awareness among patients with viral hepatitis. The study was conducted through a sociological survey (full-time, one-time, individual) with the preservation of confidentiality conditions. The study was conducted in the infectious department of Sumy Regional Infectious Diseases Clinical Hospital named after ZY Krasovitsky, Surgical Department of Sumy City Clinical Hospital №5, therapeutic department of Sumy Regional Clinical Hospital of the 4th year of Sumy State University Medical Institute in 2019. In total, 147 people took part in the survey: 20 were in treatment at the therapeutic ward, 20 - in the surgical ward, 20 - in the infectious diseases department, and 20 - 4th-year students.Conclusions. Viral hepatitis is currently one of the most pressing health problems. It is used for the sociological survey we developed to determine the level of knowledge of the population about the causative agent of viral hepatitis, transmission, prevention (not specific and specific), clinical features, laboratory methods of diagnosis, and treatment.Among all the surveyed results, recipients gave most of the correct answers to questions about the causative agent of viral hepatitis and transmission routes. The worst known are patients in the surgical wards about the presence of an effective hepatitis B vaccine (20.00%); patients of infectious and therapeutic wards (20.00% each) and 4th-year students (25.00%) - about the presence of effective hepatitis C therapy; (95.00%) and a reference group of physicians (100.00%) on the etiology of viral hepatitis. Patients in surgical wards (84.30%) answered the most frequently asked questions about the ways of transmission of viral hepatitis.
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- 2021
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250. Simplified Taxation System as a Microeconomic Fiscal Regulator
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Loboda Nataliia O., Chabaniuk Odarka М., and Mosolova Yuliia O.
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taxes ,small business ,simplified taxation system ,single tax ,small business entities ,individuals – entrepreneurs ,legal entities ,Business ,HF5001-6182 - Abstract
The article considers the specifics and features of application of the simplified taxation system in Ukraine. Small business entities can apply either general or simplified taxation system. On the basis of generalizations of literary sources and current practice, the advantages and disadvantages of the simplified system at the present stage of economic development are determined. The biggest advantages of the simplified taxation system are tax advantages, which consist in the absence of the obligation to pay certain types of taxes, as well as a simplified system of accounting and reporting for small business entities, the ability to take into account the socio-economic situation of a particular geographic area, because a single tax has to be paid to the local budget. The disadvantages are primarily associated with abuse by economic entities and their evasion of payments. Four groups of single tax payers are characterized depending on the level of annual income, the number of employees and legally established rates. The dynamics of single tax receipt is analyzed and its share in the structure of tax revenues to the Consolidated Budget of Ukraine for 2016-2020 is determined. The proportion of the single tax in the context of taxpayers for 2016-2020 is determined and it is found that the largest share of this tax comes from individual entrepreneurs. The actual problems of functioning of the simplified taxation system in Ukraine are distinguished. The main legally justified reforms are analyzed: new limits for individual entrepreneurs and introduction of registrars of settlement operations. Some changes and postponements in the legislation in connection with the COVID-19 pandemic are noted. As a result, conclusions are drawn about the need to reform the simplified taxation system, which should be aimed at improving it along with preventing abuse.
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- 2021
- Full Text
- View/download PDF
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