4,125 results on '"Laan, P"'
Search Results
202. Author Correction: Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast
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Brauns, Fridtjof, Iñigo de la Cruz, Leila, Daalman, Werner K.-G., de Bruin, Ilse, Halatek, Jacob, Laan, Liedewij, and Frey, Erwin
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- 2023
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203. Nocturnal activity as a useful indicator of adaptability of dogs in an animal shelter and after subsequent adoption
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van der Laan, Janneke Elisabeth, Vinke, Claudia Maureen, and Arndt, Saskia Stefanie
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- 2023
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204. Spin-orbit coupled spin-polarised hole gas at the CrSe2-terminated surface of AgCrSe2
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Siemann, Gesa-R., Kim, Seo-Jin, Morales, Edgar Abarca, Murgatroyd, Philip A. E., Zivanovic, Andela, Edwards, Brendan, Marković, Igor, Mazzola, Federico, Trzaska, Liam, Clark, Oliver J., Bigi, Chiara, Zhang, Haijing, Achinuq, Barat, Hesjedal, Thorsten, Watson, Matthew D., Kim, Timur K., Bencok, Peter, van der Laan, Gerrit, Polley, Craig M., Leandersson, Mats, Fedderwitz, Hanna, Ali, Khadiza, Balasubramanian, Thiagarajan, Schmidt, Marcus, Baenitz, Michael, Rosner, Helge, and King, Phil D. C.
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- 2023
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205. Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast
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Brauns, Fridtjof, Iñigo de la Cruz, Leila, Daalman, Werner K.-G., de Bruin, Ilse, Halatek, Jacob, Laan, Liedewij, and Frey, Erwin
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- 2023
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206. The accumulation of erythrocytes quantified and visualized by Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms
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Mekke, Joost M., Sakkers, Tim R., Verwer, Maarten C., van den Dungen, Noortje A. M., Song, Yipei, Miller, Clint L., Finn, Aloke V., Pasterkamp, Gerard, Mokry, Michal, den Ruijter, Hester M., Vink, Aryan, de Kleijn, Dominique P. V., de Borst, Gert J., Haitjema, Saskia, and van der Laan, Sander W.
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- 2023
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207. Study protocol for a multicenter randomised controlled trial on the (cost)effectiveness of biopsy combined with same-session MR-guided LITT versus biopsy alone in patients with primary irresectable glioblastoma (EMITT trial)
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Neutel, Céline L.G., Viozzi, Ilaria, Overduin, Christiaan G., Rijpma, Anne, Grutters, Janneke P.C., Hannink, Gerjon, van Eijsden, Pieter, Robe, Pierre A., Rovers, Maroeska M., and ter Laan, Mark
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- 2023
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208. Evaluating and improving real-world evidence with Targeted Learning
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Gruber, Susan, Phillips, Rachael V., Lee, Hana, Concato, John, and van der Laan, Mark
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- 2023
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209. X chromosome inactivation skewing is common in advanced carotid atherosclerotic lesions in females and predicts secondary peripheral artery events
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Buono, Michele F., Benavente, Ernest Diez, Daniels, Mark, Mol, Barend M., Mekke, Joost M., de Borst, Gert J., de Kleijn, Dominique P. V., van der Laan, Sander W., Pasterkamp, Gerard, Onland-Moret, Charlotte, Mokry, Michal, and den Ruijter, Hester M.
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- 2023
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210. Real-world treatment patterns in patients with nontuberculous mycobacterial lung disease in the Netherlands based on medication dispensing data
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Hoefsloot, W, Dacheva, E, van der Laan, R, Krol, M, van Ingen, J, Obradovic, M, and Liu, Ximeng
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- 2023
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211. Effect of tissue-grouped regulatory variants associated to type 2 diabetes in related secondary outcomes
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Hemerich, Daiane, Smit, Roelof A. J., Preuss, Michael, Stalbow, Lauren, van der Laan, Sander W., Asselbergs, Folkert W., van Setten, Jessica, and Tragante, Vinicius
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- 2023
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212. Publisher Correction: Immune correlates analysis of the PREVENT-19 COVID-19 vaccine efficacy clinical trial
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Fong, Youyi, Huang, Yunda, Benkeser, David, Carpp, Lindsay N., Áñez, Germán, Woo, Wayne, McGarry, Alice, Dunkle, Lisa M., Cho, Iksung, Houchens, Christopher R., Martins, Karen, Jayashankar, Lakshmi, Castellino, Flora, Petropoulos, Christos J., Leith, Andrew, Haugaard, Deanne, Webb, Bill, Lu, Yiwen, Yu, Chenchen, Borate, Bhavesh, van der Laan, Lars W. P., Hejazi, Nima S., Randhawa, April K., Andrasik, Michele P., Kublin, James G., Hutter, Julia, Keshtkar-Jahromi, Maryam, Beresnev, Tatiana H., Corey, Lawrence, Neuzil, Kathleen M., Follmann, Dean, Ake, Julie A., Gay, Cynthia L., Kotloff, Karen L., Koup, Richard A., Donis, Ruben O., and Gilbert, Peter B.
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- 2023
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213. Microdeletions and microduplications linked to severe congenital disorders in infertile men
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Kikas, Triin, Punab, Anna Maria, Kasak, Laura, Poolamets, Olev, Vihljajev, Vladimir, Pomm, Kristjan, Reiman, Mario, Tjagur, Stanislav, Korrovits, Paul, Punab, Margus, and Laan, Maris
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- 2023
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214. Immune correlates analysis of the PREVENT-19 COVID-19 vaccine efficacy clinical trial
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Fong, Youyi, Huang, Yunda, Benkeser, David, Carpp, Lindsay N., Áñez, Germán, Woo, Wayne, McGarry, Alice, Dunkle, Lisa M., Cho, Iksung, Houchens, Christopher R., Martins, Karen, Jayashankar, Lakshmi, Castellino, Flora, Petropoulos, Christos J., Leith, Andrew, Haugaard, Deanne, Webb, Bill, Lu, Yiwen, Yu, Chenchen, Borate, Bhavesh, van der Laan, Lars W. P., Hejazi, Nima S., Randhawa, April K., Andrasik, Michele P., Kublin, James G., Hutter, Julia, Keshtkar-Jahromi, Maryam, Beresnev, Tatiana H., Corey, Lawrence, Neuzil, Kathleen M., Follmann, Dean, Ake, Julie A., Gay, Cynthia L., Kotloff, Karen L., Koup, Richard A., Donis, Ruben O., and Gilbert, Peter B.
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- 2023
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215. LoFTK: a framework for fully automated calculation of predicted Loss-of-Function variants and genes
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Alasiri, Abdulrahman, Karczewski, Konrad J., Cole, Brian, Loza, Bao-Li, Moore, Jason H., van der Laan, Sander W., Asselbergs, Folkert W., Keating, Brendan J., and van Setten, Jessica
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- 2023
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216. An automatic entropy method to efficiently mask histology whole-slide images
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Song, Yipei, Cisternino, Francesco, Mekke, Joost M., de Borst, Gert J., de Kleijn, Dominique P. V., Pasterkamp, Gerard, Vink, Aryan, Glastonbury, Craig A., van der Laan, Sander W., and Miller, Clint L.
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- 2023
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217. Immune correlates analysis of a phase 3 trial of the AZD1222 (ChAdOx1 nCoV-19) vaccine
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Benkeser, David, Fong, Youyi, Janes, Holly E., Kelly, Elizabeth J., Hirsch, Ian, Sproule, Stephanie, Stanley, Ann Marie, Maaske, Jill, Villafana, Tonya, Houchens, Christopher R., Martins, Karen, Jayashankar, Lakshmi, Castellino, Flora, Ayala, Victor, Petropoulos, Christos J., Leith, Andrew, Haugaard, Deanne, Webb, Bill, Lu, Yiwen, Yu, Chenchen, Borate, Bhavesh, van der Laan, Lars W. P., Hejazi, Nima S., Carpp, Lindsay N., Randhawa, April K., Andrasik, Michele P., Kublin, James G., Isaacs, Margaret Brewinski, Makhene, Mamodikoe, Tong, Tina, Robb, Merlin L., Corey, Lawrence, Neuzil, Kathleen M., Follmann, Dean, Hoffman, Corey, Falsey, Ann R., Sobieszczyk, Magdalena, Koup, Richard A., Donis, Ruben O., and Gilbert, Peter B.
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- 2023
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218. DDX3Y is likely the key spermatogenic factor in the AZFa region that contributes to human non-obstructive azoospermia
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Dicke, Ann-Kristin, Pilatz, Adrian, Wyrwoll, Margot J., Punab, Margus, Ruckert, Christian, Nagirnaja, Liina, Aston, Kenneth I., Conrad, Donald F., Di Persio, Sara, Neuhaus, Nina, Fietz, Daniela, Laan, Maris, Stallmeyer, Birgit, and Tüttelmann, Frank
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- 2023
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219. Improving the early reactivity of activated basic oxygen furnace slag – The influence of particle fineness and grinding aids
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J.C.O. Zepper, S. de Bruin, X. Ling, K. Schollbach, S.R. van der Laan, and H.J.H. Brouwers
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Basic oxygen furnace slag ,Activation ,Grinding aids ,Reactivity ,Particle fineness ,Technology - Abstract
Basic oxygen furnace slag (BOF slag), also known as Linz-Donauwitz slag, is an industrially by-product of the steel industry and produced during the converter process. In this research we have investigated the effect of grinding aids and particle fineness on the hydration of potassium citrate activated BOF slag. It was investigated the effects of five different grinding aids on the grindability and hydration of activated BOF slag in laboratory batch milling experiments. The grinding aids generally improve the grindability of BOF slag and therefore increase the particle fineness of BOF slag. This had the consequence that the hydration of activated BOF slag was improved. Only one grinding aid, triethanolamine (TEA) also improved the hydration of BOF slag besides providing higher particle fineness. The combination of the higher particle fineness and additional effect of TEA on the hydration improved the compressive strength to 60 and 78 MPa of activated BOF slag. An additional important of this research is that the hydration of BOF slag is significantly more sensitive on particle fineness compared to ordinary Portland cement.
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- 2024
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220. Host genetics drives differences in cecal microbiota composition and immune traits of laying hens raised in the same environment
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Alexandre Lecoeur, Fany Blanc, David Gourichon, Nicolas Bruneau, Thierry Burlot, Marie-Hélène Pinard-van der Laan, and Fanny Calenge
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genetic ,gallus gallus ,gut microbiota ,vaccine response ,immunity ,Animal culture ,SF1-1100 - Abstract
ABSTRACT: Vaccination is one of the most effective strategies for preventing infectious diseases but individual vaccine responses are highly heterogeneous. Host genetics and gut microbiota composition are 2 likely drivers of this heterogeneity. We studied 94 animals belonging to 4 lines of laying hens: a White Leghorn experimental line genetically selected for a high antibody response against the Newcastle Disease Virus (NDV) vaccine (ND3) and its unselected control line (CTR), and 2 commercial lines (White Leghorn [LEG] and Rhode Island Red [RIR]). Animals were reared in the same conditions from hatching to 42 d of age, and animals from different genetic lines were mixed. Animals were vaccinated at 22 d of age and their humoral vaccine response against NDV was assessed by hemagglutination inhibition assay and ELISA from blood samples collected at 15, 19, and 21 d after vaccination. The immune parameters studied were the 3 immunoglobulins subtypes A, M, and Y and the blood cell composition was assessed by flow cytometry. The composition of the cecal microbiota was assessed at the end of the experiment by analyzing amplified 16S rRNA gene sequences to obtain amplicon sequence variants (ASV). The 4 lines showed significantly different levels of NDV vaccine response at the 3 measured points, with, logically, a higher response of the genetically selected ND3 line, and intermediate and low responses for the unselected CTR control line and for the 2 commercial lines, respectively. The ND3 line displayed also a higher proportion of immunoglobulins (IgA, IgM, and IgY). The RIR line showed the most different blood cell composition. The 4 lines showed significantly different microbiota characteristics: composition, abundances at all taxonomic levels, and correlations between genera and vaccine response. The tested genetic lines differ for immune parameters and gut microbiota composition and functions. These phenotypic differences can be attributed to genetic differences between lines. Causal relationships between both types of parameters are discussed and will be investigated in further studies.
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- 2024
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221. Concentrations of subcutaneously administered belimumab in human breast milk of a woman with systemic lupus erythematosus: a case report
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Alexandre E Voskuyl, Theo Rispens, Marjon A de Boer, Mirjam M van Weissenbruch, Irene E M Bultink, Birgit S Blomjous, and Koen C J Laan
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Immunologic diseases. Allergy ,RC581-607 - Published
- 2024
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222. Grading recommendations for enhanced patient safety in sentinel event analysis: the recommendation improvement matrix
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Dave A Dongelmans, Dink A Legemate, Kelly Bos, Maarten J van der Laan, Ian Leistikow, Jop Groeneweg, and Gert Jan Kamps
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Medicine (General) ,R5-920 - Abstract
Objectives The goal of sentinel event (SE) analysis is to prevent recurrence. However, the rate of SEs has remained constant over the past years. Research suggests this is in part due to the quality of recommendations. Currently, standards for the selection of recommendations are lacking. Developing a method to grade recommendations could help in both designing and selecting interventions most likely to improve patient safety. The aim of this study was to (1) develop a user-friendly method to grade recommendations and (2) assess its applicability in a large series of Dutch perioperative SE analysis reports.Methods Based on two grading methods, we developed the recommendation improvement matrix (RIM). Applicability was assessed by analysing all Dutch perioperative SE reports over a 12-month period. After which interobserver agreement was studied.Results In the RIM, two elements are crucial: whether the recommendation intervenes before or after an SE and whether it eliminates or controls the hazard. Applicability was evaluated in 115 analysis reports, encompassing 161 recommendations. Recommendation quality varied from the highest, category A, to the lowest, category D, with category A accounting for 44%, category B for 35%, category C for 2% and category D for 19% of recommendations. There was a fair interobserver agreement.Conclusion The RIM can be used to grade recommendations in SE analysis and could possibly help in both designing and selecting interventions. It is relatively simple, user-friendly and has the potential to improve patient safety. The RIM can help formulate effective and sustainable recommendations, a second key objective of the RIM is to foster and facilitate constructive dialogue among those responsible for patient safety.
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- 2024
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223. ICH S1 prospective evaluation study: weight of evidence approach to predict outcome and value of 2-year rat carcinogenicity studies. A report from the regulatory authorities subgroup
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Todd Bourcier, Timothy McGovern, Tania Cavaliero, Geoffrey Ebere, Akiyoshi Nishikawa, Jihei Nishimura, Kumiko Ogawa, Markku Pasanen, Alisa Vespa, and Jan Willem Van der Laan
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carcinogenicity ,bioassay ,weight of evidence ,ICH S1B(R1) ,risk assessment ,pharmaceuticals ,Toxicology. Poisons ,RA1190-1270 - Abstract
Introduction: The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use (ICH) initiated a process in 2012 to revise the S1B Guideline “Testing for Carcinogenicity of Pharmaceuticals”. Previous retrospective analysis indicated the importance of histopathological risk factors in chronic toxicity studies, evidence of endocrine perturbation, and positive genetic toxicology results as potentially predictive indicators of carcinogenic risk. In addition, a relationship between pharmacodynamic activity and carcinogenicity outcome in long-term rodent studies has been reported. It was postulated that these factors could be evaluated in a Weight-of-Evidence (WoE) approach to predict the outcome of a 2-year rat study.Methods: The ICH S1B(R1) Expert Working Group (EWG) conducted a Prospective Evaluation Study (PES) to determine the regulatory feasibility of this WoE approach. Drug Regulatory Authorities (DRAs) evaluated 49 Carcinogenicity Assessment Documents (CADs), which describe the WoE for submitted pharmaceutical compounds. Each compound was categorized into a carcinogenic risk category including a statement of the value of the 2-year rat study. The outcome of the completed 2-year rat studies was evaluated in relation to the prospective CAD to determine the accuracy of predictions.Results: Based on the results of the PES, the EWG concluded that the evaluation process for assessing human carcinogenic risk of pharmaceuticals described in ICH S1B could be expanded to include a WoE approach. Approximately 27% of 2-year rat studies could be avoided in cases where DRAs and sponsors unanimously agreed that such a study would not add value.Discussion: Key factors supporting a WoE assessment were identified: data that inform carcinogenic potential based on drug target biology and the primary pharmacologic mechanism of the parent compound and major human metabolites; results from secondary pharmacology screens for this compound and major human metabolites that inform carcinogenic risk; histopathology data from repeated-dose toxicity studies; evidence for hormonal perturbation; genotoxicity data; and evidence of immune modulation. The outcome of the PES indicates that a WoE approach can be used in place of conducting a 2-year rat study for some pharmaceuticals. These data were used by the ICH S1B(R1) EWG to write the R1 Addendum to the S1B Guideline published in August 2022.
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- 2024
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224. Undiagnosed RASopathies in infertile men
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Anna-Grete Juchnewitsch, Kristjan Pomm, Avirup Dutta, Erik Tamp, Anu Valkna, Kristiina Lillepea, Eisa Mahyari, Stanislav Tjagur, Galina Belova, Viljo Kübarsepp, Helen Castillo-Madeen, Antoni Riera-Escamilla, Lisanna Põlluaas, Liina Nagirnaja, Olev Poolamets, Vladimir Vihljajev, Mailis Sütt, Nassim Versbraegen, Sofia Papadimitriou, Robert I. McLachlan, Keith A. Jarvi, Peter N. Schlegel, Sven Tennisberg, Paul Korrovits, Katinka Vigh-Conrad, Moira K. O’Bryan, Kenneth I. Aston, Tom Lenaerts, Donald F. Conrad, Laura Kasak, Margus Punab, and Maris Laan
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cryptorchidism ,syndromic male infertility ,exome sequencing ,RAS/MAPK pathway ,molecular diagnosis ,cancer ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 - Abstract
RASopathies are syndromes caused by congenital defects in the Ras/mitogen-activated protein kinase (MAPK) pathway genes, with a population prevalence of 1 in 1,000. Patients are typically identified in childhood based on diverse characteristic features, including cryptorchidism (CR) in >50% of affected men. As CR predisposes to spermatogenic failure (SPGF; total sperm count per ejaculate 0–39 million), we hypothesized that men seeking infertility management include cases with undiagnosed RASopathies. Likely pathogenic or pathogenic (LP/P) variants in 22 RASopathy-linked genes were screened in 521 idiopathic SPGF patients (including 155 CR cases) and 323 normozoospermic controls using exome sequencing. All 844 men were recruited to the ESTonian ANDrology (ESTAND) cohort and underwent identical andrological phenotyping. RASopathy-specific variant interpretation guidelines were used for pathogenicity assessment. LP/P variants were identified in PTPN11 (two), SOS1 (three), SOS2 (one), LZTR1 (one), SPRED1 (one), NF1 (one), and MAP2K1 (one). The findings affected six of 155 cases with CR and SPGF, three of 366 men with SPGF only, and one (of 323) normozoospermic subfertile man. The subgroup “CR and SPGF” had over 13-fold enrichment of findings compared to controls (3.9% vs. 0.3%; Fisher’s exact test, p = 5.5 × 10−3). All ESTAND subjects with LP/P variants in the Ras/MAPK pathway genes presented congenital genitourinary anomalies, skeletal and joint conditions, and other RASopathy-linked health concerns. Rare forms of malignancies (schwannomatosis and pancreatic and testicular cancer) were reported on four occasions. The Genetics of Male Infertility Initiative (GEMINI) cohort (1,416 SPGF cases and 317 fertile men) was used to validate the outcome. LP/P variants in PTPN11 (three), LZTR1 (three), and MRAS (one) were identified in six SPGF cases (including 4/31 GEMINI cases with CR) and one normozoospermic man. Undiagnosed RASopathies were detected in total for 17 ESTAND and GEMINI subjects, 15 SPGF patients (10 with CR), and two fertile men. Affected RASopathy genes showed high expression in spermatogenic and testicular somatic cells. In conclusion, congenital defects in the Ras/MAPK pathway genes represent a new congenital etiology of syndromic male infertility. Undiagnosed RASopathies were especially enriched among patients with a history of cryptorchidism. Given the relationship between RASopathies and other conditions, infertile men found to have this molecular diagnosis should be evaluated for known RASopathy-linked health concerns, including specific rare malignancies.
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- 2024
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225. P137 Concentrations of subcutaneously administered belimumab in human breast milk in a woman with systemic lupus erythematosus: a case report
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Theo Rispens, Birgit Blomjous, Irene Bultink, Alexandre Voskuyl, Mirjam van Weissenbruch, Marjon de Boer, and Koen Laan
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Immunologic diseases. Allergy ,RC581-607 - Published
- 2024
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226. Animal board invited review: Improving animal health and welfare in the transition of livestock farming systems: Towards social acceptability and sustainability
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C. Ducrot, M.B. Barrio, A. Boissy, F. Charrier, S. Even, P. Mormède, S. Petit, M.-H. Pinard-van der laan, F. Schelcher, F. Casabianca, A. Ducos, G. Foucras, R. Guatteo, J.-L. Peyraud, M. Vayssier-Taussat, P. Veysset, N.C. Friggens, and X. Fernandez
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Interaction ,Society ,Territory ,Value chain ,Assessment ,Animal culture ,SF1-1100 - Abstract
The need to integrate more clearly societal expectations on livestock farming has led the authors of this article to consider that livestock farming systems must be redesigned to position health and welfare at the heart of their objectives. This article proposes a vision of the advances in knowledge required at different scales to contribute to this transformation. After defining health and welfare of animals, the article emphasises the need to consider health in a broader perspective, to deepen the question of positive emotional experiences regarding welfare, and raises the question of how to assess these two elements on farms. The positive interactions between health and welfare are presented. Some possible tensions between them are also discussed, in particular when improving welfare by providing a more stimulating and richer environment such as access to outdoor increases the risk of infectious diseases. Jointly improving health and welfare of animals poses a number of questions at various scales, from the animal level to the production chain. At the animal level, the authors highlight the need to explore: the long-term links between better welfare and physiological balance, the role of microbiota, the psycho-neuro-endocrine mechanisms linking positive mental state and health, and the trade-off between the physiological functions of production, reproduction and immunity. At the farm level, in addition to studying the relationships at the group level between welfare, health and production, the paper supports the idea of co-constructing innovative systems with livestock farmers, as well as analysing the cost, acceptability and impact of improved systems on their working conditions and well-being. At the production chain or territory levels, various questions are raised. These include studying the best strategies to improve animal health and welfare while preserving economic viability, the labelling of products and the consumers’ willingness to pay, the consequences of heterogeneity in animal traits on the processing of animal products, and the spatial distribution of livestock farming and the organisation of the production and value chain. At the level of the citizen and consumer, one of the challenges is to better inter-relate sanitary and health perspectives on the one hand, and welfare concerns on the other hand. There is also a need to improve citizens' knowledge on livestock farming, and to develop more intense and constructive exchanges between livestock farmers, the livestock industry and citizens. These difficult issues plead for interdisciplinary and transdisciplinary research involving various scientific disciplines and the different stakeholders, including public policy makers through participatory research.
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- 2024
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227. Identification of MIMAS, a multifunctional mega-assembly integrating metabolic and respiratory biogenesis factors of mitochondria
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Patrick Horten, Kuo Song, Joshua Garlich, Robert Hardt, Lilia Colina-Tenorio, Susanne E. Horvath, Uwe Schulte, Bernd Fakler, Martin van der Laan, Thomas Becker, Rosemary A. Stuart, Nikolaus Pfanner, and Heike Rampelt
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CP: Molecular biology ,CP: Metabolism ,Biology (General) ,QH301-705.5 - Abstract
Summary: The mitochondrial inner membrane plays central roles in bioenergetics and metabolism and contains several established membrane protein complexes. Here, we report the identification of a mega-complex of the inner membrane, termed mitochondrial multifunctional assembly (MIMAS). Its large size of 3 MDa explains why MIMAS has escaped detection in the analysis of mitochondria so far. MIMAS combines proteins of diverse functions from respiratory chain assembly to metabolite transport, dehydrogenases, and lipid biosynthesis but not the large established supercomplexes of the respiratory chain, ATP synthase, or prohibitin scaffold. MIMAS integrity depends on the non-bilayer phospholipid phosphatidylethanolamine, in contrast to respiratory supercomplexes whose stability depends on cardiolipin. Our findings suggest that MIMAS forms a protein-lipid mega-assembly in the mitochondrial inner membrane that integrates respiratory biogenesis and metabolic processes in a multifunctional platform.
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- 2024
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228. Improving referral rates for smoking cessation: A multifaceted intervention aimed at radiation oncologists
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Iris Bronsema, Luc van Lonkhuijzen, Peter Scholten, Janna Laan, Henrike Westerveld, and Lukas Stalpers
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Smoking cessation ,Cancer ,Radiotherapy ,Referral ,Consultation ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Objective: Continuation of smoking after a cancer diagnosis increases the burdensome side effects from cancer treatment, and decreases the chances of cure. Smoking cessation may improve oncological outcomes in cancer patients. This study aims to evaluate if radiation oncologists can be motivated by a smoking cessation awareness intervention to discuss smoking status more frequently and increase the referral rate for smoking cessation-support.Study design and Setting:A multifaceted approach was used to improve awareness: First, current practice was evaluated by a retrospective chart review of 282 patients referred for radiotherapy to ascertain smoking status, discussion of smoking cessation support and referral rates. Secondly, radiation oncologists were interviewed about their motives and barriers to discuss smoking status and smoking cessation support. The results were fed back in a teaching lecture to the doctors involved. Finally, the effect of this smoking cessation awareness intervention was prospectively evaluated in 100 patients. Results: After the smoking cessation awareness intervention, smoking cessation was more frequently discussed compared to baseline (77% (10/13)) and 39.5% (17/43) respectively. The referral rate for smoking cessation increased from 2.3% (1/43) to 69.2% (9/13) Conclusion: Without an active smoking prevention awareness policy, referral for smoking cessation support for cancer patients by radiation oncologists is low. A relatively short and simple smoking awareness intervention for radiation oncologist may result in a more frequent discussion with patients about smoking cessation and an even larger increase in referrals for smoking cessation support.
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- 2024
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229. Investigating Nanoscale Electron Transfer Processes at the Cell-Mineral Interface in Cobalt-Doped Ferrihydrite Using Geobacter sulfurreducens: A Multi-Technique Approach
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Buchanan, Dawn M, Newsome, Laura, Lloyd, Jonathan R, Kazemian, Majid, Kaulich, Burkhard, Araki, Tohru, Bagshaw, Heath, Waters, John, van der Laan, Gerrit, N’Diaye, Alpha, and Coker, Victoria S
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Earth Sciences ,Geology ,Geophysics ,Physical Geography and Environmental Geoscience ,Physical geography and environmental geoscience - Abstract
Cobalt is an essential element for life and plays a crucial role in supporting the drive to clean energy, due to its importance in rechargeable batteries. Co is often associated with Fe in the environment, but the fate of Co in Fe-rich biogeochemically-active environments is poorly understood. To address this, synchrotron-based scanning X-ray microscopy (SXM) was used investigate the behaviour of cobalt at the nanoscale in Co-Fe(III)-oxyhydroxides undergoing microbial reduction. SXM can assess spatial changes in metal speciation and organic compounds helping to elucidate the electron transfer processes occurring at the cell-mineral interface and inform on the fate of cobalt in redox horizons. G. sulfurreducens was used to reduce synthetic Co-ferrihydrite as an analogue of natural cobalt-iron-oxides. Magnetite [Fe(II)/Fe(III)3O4] production was confirmed by powder X-ray diffraction (XRD), SXM and X-ray magnetic circular dichroism (XMCD) data, where best fits of the latter suggested Co-bearing magnetite. Macro-scale XAS techniques suggested Co(III) reduction occurred and complementary SXM at the nanoscale, coupled with imaging, found localised biogenic Co(III) reduction at the cell-mineral interface via direct contact with outer membrane cytochromes. No discernible localised changes in Fe speciation were detected in the reordered cobalt-iron-oxides that were formed and at the end point of the experiment only 11% Co and 1.5% Fe had been solubilised. The solid phase retention, alongside the highly localised and preferential cobalt bioreduction observed at the nanoscale is consistent with retention of Co in redox zones. This work improves our fundamental molecular-scale understanding of the fate of Co in complex environmental systems and supports the development of biogenic Co-doped magnetite for industrial applications from drug delivery systems to magnetic recording media.
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- 2022
230. Evaluating the robustness of targeted maximum likelihood estimators via realistic simulations in nutrition intervention trials.
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Li, Haodong, Rosete, Sonali, Coyle, Jeremy, Phillips, Rachael V, Hejazi, Nima S, Malenica, Ivana, Arnold, Benjamin F, Benjamin-Chung, Jade, Mertens, Andrew, Colford, John M, van der Laan, Mark J, and Hubbard, Alan E
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Humans ,Models ,Statistical ,Likelihood Functions ,Regression Analysis ,Causality ,Research Design ,Computer Simulation ,Machine Learning ,causal inference ,highly adaptive lasso ,machine learning ,realistic simulation ,targeted learning ,Generic health relevance ,Statistics ,Public Health and Health Services ,Statistics & Probability - Abstract
Several recently developed methods have the potential to harness machine learning in the pursuit of target quantities inspired by causal inference, including inverse weighting, doubly robust estimating equations and substitution estimators like targeted maximum likelihood estimation. There are even more recent augmentations of these procedures that can increase robustness, by adding a layer of cross-validation (cross-validated targeted maximum likelihood estimation and double machine learning, as applied to substitution and estimating equation approaches, respectively). While these methods have been evaluated individually on simulated and experimental data sets, a comprehensive analysis of their performance across real data based simulations have yet to be conducted. In this work, we benchmark multiple widely used methods for estimation of the average treatment effect using ten different nutrition intervention studies data. A nonparametric regression method, undersmoothed highly adaptive lasso, is used to generate the simulated distribution which preserves important features from the observed data and reproduces a set of true target parameters. For each simulated data, we apply the methods above to estimate the average treatment effects as well as their standard errors and resulting confidence intervals. Based on the analytic results, a general recommendation is put forth for use of the cross-validated variants of both substitution and estimating equation estimators. We conclude that the additional layer of cross-validation helps in avoiding unintentional over-fitting of nuisance parameter functionals and leads to more robust inferences.
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- 2022
231. Moxifloxacin Pharmacokinetics, Cardiac Safety, and Dosing for the Treatment of Rifampicin-Resistant Tuberculosis in Children
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Radtke, Kendra K, Hesseling, Anneke C, Winckler, JL, Draper, Heather R, Solans, Belen P, Thee, Stephanie, Wiesner, Lubbe, van der Laan, Louvina E, Fourie, Barend, Nielsen, James, Schaaf, H Simon, Savic, Radojka M, and Garcia-Prats, Anthony J
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Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Clinical Sciences ,HIV/AIDS ,Clinical Trials and Supportive Activities ,Clinical Research ,Pediatric ,Orphan Drug ,Rare Diseases ,Infectious Diseases ,Tuberculosis ,5.1 Pharmaceuticals ,6.1 Pharmaceuticals ,Evaluation of treatments and therapeutic interventions ,Development of treatments and therapeutic interventions ,Infection ,Good Health and Well Being ,Adult ,Child ,Child ,Preschool ,Electrocardiography ,Fluoroquinolones ,HIV Infections ,Humans ,Moxifloxacin ,Rifampin ,Tuberculosis ,Multidrug-Resistant ,pharmacokinetics ,tuberculosis ,moxifloxacin ,pediatrics ,Biological Sciences ,Medical and Health Sciences ,Microbiology ,Clinical sciences - Abstract
BackgroundMoxifloxacin is a recommended drug for rifampin-resistant tuberculosis (RR-TB) treatment, but there is limited pediatric pharmacokinetic and safety data, especially in young children. We characterize moxifloxacin population pharmacokinetics and QT interval prolongation and evaluate optimal dosing in children with RR-TB.MethodsPharmacokinetic data were pooled from 2 observational studies in South African children with RR-TB routinely treated with oral moxifloxacin once daily. The population pharmacokinetics and Fridericia-corrected QT (QTcF)-interval prolongation were characterized in NONMEM. Pharmacokinetic simulations were performed to predict expected exposure and optimal weight-banded dosing.ResultsEighty-five children contributed pharmacokinetic data (median [range] age of 4.6 [0.8-15] years); 16 (19%) were aged
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- 2022
232. Robust kagome electronic structure in the topological quantum magnets XMn6Sn6 (X=Dy,Tb,Gd,Y)
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Gu, X, Chen, C, Wei, WS, Gao, LL, Liu, JY, Du, X, Pei, D, Zhou, JS, Xu, RZ, Yin, ZX, Zhao, WX, Li, YD, Jozwiak, C, Bostwick, A, Rotenberg, E, Backes, D, Veiga, LSI, Dhesi, S, Hesjedal, T, van der Laan, G, Du, HF, Jiang, WJ, Qi, YP, Li, G, Shi, WJ, Liu, ZK, Chen, YL, and Yang, LX
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Quantum Physics ,Physical Sciences ,Condensed Matter Physics ,Chemical sciences ,Engineering ,Physical sciences - Abstract
Crystal geometry can greatly influence the emergent properties of quantum materials. As an example, the kagome lattice is an ideal platform to study the rich interplay between topology, magnetism, and electronic correlation. In this work, combining high-resolution angle-resolved photoemission spectroscopy and ab initio calculation, we systematically investigate the electronic structure of XMn6Sn6 (X=Dy,Tb,Gd,Y) family compounds. We observe the Dirac fermion and the flat band arising from the magnetic kagome lattice of Mn atoms. Interestingly, the flat band locates in the same energy region in all compounds studied, regardless of their different magnetic ground states and 4f electronic configurations. These observations suggest a robust Mn magnetic kagome lattice across the XMn6Sn6 family, thus providing an ideal platform for the search for, and investigation of, new emergent phenomena in magnetic topological materials.
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- 2022
233. Magnetic properties of ruthenium dioxide (RuO2) and charge-magnetic interference in Bragg diffraction of circularly polarized x-rays
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Lovesey, S. W., Khalyavin, D. D., and van der Laan, G.
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Condensed Matter - Strongly Correlated Electrons - Abstract
Rutile-type RuO2 likely supports a simple antiferromagnetic structure which can be verified by x-ray Bragg diffraction. Three magnetic motifs that do not break translation symmetry are explored in calculations of amplitudes suitable for diffraction enhanced by tuning the primary x-ray energy to a ruthenium atomic resonance. Coupling to x-ray helicity through a charge-magnetic interference is common to all motifs, together with magnetic and charge intensities in quadrature in the rotated channel of polarization. Necessary conditions for these diffraction phenomena are a centrosymmetric crystal structure, null magnetic propagation vector, and absence of a linear magnetoelectric effect. Published x-ray diffraction data for RuO2 was analysed by the authors against a magnetic motif that does not satisfy the conditions. A polarized neutron study of antiferromagnetic domains can be achieved with a sample that meets the stated crystal and magnetic symmetries.
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- 2021
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234. Efficient nonparametric estimation of the covariate-adjusted threshold-response function, a support-restricted stochastic intervention
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van der Laan, Lars, Zhang, Wenbo, and Gilbert, Peter B.
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Statistics - Methodology - Abstract
Identifying a biomarker or treatment-dose threshold that marks a specified level of risk is an important problem, especially in clinical trials. This risk, viewed as a function of thresholds and possibly adjusted for covariates, we call the threshold-response function. Extending the work of Donovan, Hudgens and Gilbert (2019), we propose a nonparametric efficient estimator for the covariate-adjusted threshold-response function, which utilizes machine learning and Targeted Minimum-Loss Estimation (TMLE). We additionally propose a more general estimator, based on sequential regression, that also applies when there is outcome missingness. We show that the threshold-response for a given threshold may be viewed as the expected outcome under a stochastic intervention where all participants are given a treatment dose above the threshold. We prove the estimator is efficient and characterize its asymptotic distribution. A method to construct simultaneous 95% confidence bands for the threshold-response function and its inverse is given. Furthermore, we discuss how to adjust our estimator when the treatment or biomarker is missing-at-random, as is the case in clinical trials with biased sampling designs, using inverse-probability-weighting. The methods are assessed in a diverse set of simulation settings with rare outcomes and cumulative case-control sampling. The methods are employed to estimate neutralizing antibody thresholds for virologically confirmed dengue risk in the CYD14 and CYD15 dengue vaccine trials., Comment: 51 pages including supplement, 7 figures, 1 table
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- 2021
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235. One-step TMLE for targeting cause-specific absolute risks and survival curves
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Rytgaard, Helene C. W. and van der Laan, Mark J.
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Statistics - Methodology - Abstract
This paper considers one-step targeted maximum likelihood estimation method for general competing risks and survival analysis settings where event times take place on the positive real line R+ and are subject to right-censoring. Our interest is overall in the effects of baseline treatment decisions, static, dynamic or stochastic, possibly confounded by pre-treatment covariates. We point out two overall contributions of our work. First, our method can be used to obtain simultaneous inference across all absolute risks in competing risks settings. Second, we present a practical result for achieving inference for the full survival curve, or a full absolute risk curve, across time by targeting over a fine enough grid of points. The one-step procedure is based on a one-dimensional universal least favorable submodel for each cause-specific hazard that can be implemented in recursive steps along a corresponding universal least favorable submodel. We present a theorem for conditions to achieve weak convergence of the estimator for an infinite-dimensional target parameter. Our empirical study demonstrates the use of the methods., Comment: 21 pages (including appendix), 1 figure, 5 tables
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- 2021
236. Two-Stage TMLE to Reduce Bias and Improve Efficiency in Cluster Randomized Trials
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Balzer, Laura B., van der Laan, Mark, Ayieko, James, Kamya, Moses, Chamie, Gabriel, Schwab, Joshua, Havlir, Diane V., and Petersen, Maya L.
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Statistics - Methodology ,Statistics - Applications ,Statistics - Machine Learning - Abstract
Cluster randomized trials (CRTs) randomly assign an intervention to groups of individuals (e.g., clinics or communities) and measure outcomes on individuals in those groups. While offering many advantages, this experimental design introduces challenges that are only partially addressed by existing analytic approaches. First, outcomes are often missing for some individuals within clusters. Failing to appropriately adjust for differential outcome measurement can result in biased estimates and inference. Second, CRTs often randomize limited numbers of clusters, resulting in chance imbalances on baseline outcome predictors between arms. Failing to adaptively adjust for these imbalances and other predictive covariates can result in efficiency losses. To address these methodological gaps, we propose and evaluate a novel two-stage targeted minimum loss-based estimator (TMLE) to adjust for baseline covariates in a manner that optimizes precision, after controlling for baseline and post-baseline causes of missing outcomes. Finite sample simulations illustrate that our approach can nearly eliminate bias due to differential outcome measurement, while existing CRT estimators yield misleading results and inferences. Application to real data from the SEARCH community randomized trial demonstrates the gains in efficiency afforded through adaptive adjustment for baseline covariates, after controlling for missingness on individual-level outcomes., Comment: 37 pages total; main text is 17 pgs with 2 figures and 3 tables; supp material is 14 pgs with 1 figure and 5 tables
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- 2021
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237. Estimation of time-specific intervention effects on continuously distributed time-to-event outcomes by targeted maximum likelihood estimation
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Rytgaard, Helene Charlotte Wiese, Eriksson, Frank, and van der Laan, Mark
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Statistics - Methodology - Abstract
Targeted maximum likelihood estimation is a general methodology combining flexible ensemble learning and semiparametric efficiency theory in a two-step procedure for estimation of causal parameters. Proposed targeted maximum likelihood procedures for survival and competing risks analysis have so far focused on events taken values in discrete time. We here present a targeted maximum likelihood estimation procedure for event times that take values in R+. We focuson the estimation of intervention-specific mean outcomes with stochastic interventions on a time-fixed treatment. For data-adaptive estimation of nuisance parameters, we propose a new flexible highly adaptive lasso estimation method for continuous-time intensities that can be implemented with L1-penalized Poisson regression. In a simulation study the targeted maximum likelihood estimator based on the highly adaptive lasso estimator proves to be unbiased and achieve proper coverage in agreement with the asymptotic theory and further displays efficiency improvements relative to a Kaplan-Meier approach.
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- 2021
238. Risk Minimization from Adaptively Collected Data: Guarantees for Supervised and Policy Learning
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Bibaut, Aurélien, Chambaz, Antoine, Dimakopoulou, Maria, Kallus, Nathan, and van der Laan, Mark
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Statistics - Machine Learning ,Computer Science - Machine Learning ,Mathematics - Statistics Theory - Abstract
Empirical risk minimization (ERM) is the workhorse of machine learning, whether for classification and regression or for off-policy policy learning, but its model-agnostic guarantees can fail when we use adaptively collected data, such as the result of running a contextual bandit algorithm. We study a generic importance sampling weighted ERM algorithm for using adaptively collected data to minimize the average of a loss function over a hypothesis class and provide first-of-their-kind generalization guarantees and fast convergence rates. Our results are based on a new maximal inequality that carefully leverages the importance sampling structure to obtain rates with the right dependence on the exploration rate in the data. For regression, we provide fast rates that leverage the strong convexity of squared-error loss. For policy learning, we provide rate-optimal regret guarantees that close an open gap in the existing literature whenever exploration decays to zero, as is the case for bandit-collected data. An empirical investigation validates our theory.
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- 2021
239. Post-Contextual-Bandit Inference
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Bibaut, Aurélien, Chambaz, Antoine, Dimakopoulou, Maria, Kallus, Nathan, and van der Laan, Mark
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Statistics - Machine Learning ,Computer Science - Machine Learning ,Mathematics - Statistics Theory - Abstract
Contextual bandit algorithms are increasingly replacing non-adaptive A/B tests in e-commerce, healthcare, and policymaking because they can both improve outcomes for study participants and increase the chance of identifying good or even best policies. To support credible inference on novel interventions at the end of the study, nonetheless, we still want to construct valid confidence intervals on average treatment effects, subgroup effects, or value of new policies. The adaptive nature of the data collected by contextual bandit algorithms, however, makes this difficult: standard estimators are no longer asymptotically normally distributed and classic confidence intervals fail to provide correct coverage. While this has been addressed in non-contextual settings by using stabilized estimators, the contextual setting poses unique challenges that we tackle for the first time in this paper. We propose the Contextual Adaptive Doubly Robust (CADR) estimator, the first estimator for policy value that is asymptotically normal under contextual adaptive data collection. The main technical challenge in constructing CADR is designing adaptive and consistent conditional standard deviation estimators for stabilization. Extensive numerical experiments using 57 OpenML datasets demonstrate that confidence intervals based on CADR uniquely provide correct coverage.
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- 2021
240. Nocturnal activity as a useful indicator of adaptability of dogs in an animal shelter and after subsequent adoption
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Janneke Elisabeth van der Laan, Claudia Maureen Vinke, and Saskia Stefanie Arndt
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Medicine ,Science - Abstract
Abstract Dogs in shelters are faced with the challenge of adapting to a kennel after relinquishment and to a novel home after adoption. To measure adaptability of dogs, more feasible behavioural and physiological parameters need to be validated in different contexts. To evaluate nocturnal activity as an indicator of adaptability, we compared nocturnal activity, urinary cortisol:creatinine ratio (UCCR), and body weight changes of sheltered dogs the first period after intake in the shelter and after adoption. Nocturnal activity and UCCRs were significantly lower the first days after adoption than in the shelter. After adoption, nocturnal activity was significantly lower on night 2 than night 1, but not on night 3 and 4, suggesting a form of ‘rebound of resting’ during night 2 in the new home. UCCRs significantly decreased 7 days after adoption. Body weight decreased in the shelter but increased again after adoption. These findings suggest that overall, dogs rest better in a novel home than in a novel shelter but, in both contexts, some form of adaptation takes place. Nocturnal activity measured by an accelerometer differentiated well between shelter and home environments, and corresponded to UCCR responses, which supports usefulness of the method to monitor canine adaptability to novel environments.
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- 2023
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241. Prenatal identification of an inverted duplicated 13q marker chromosome with a neocentromere
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Liselot van der Laan, Daniel R. Hoekman, Esther J. Wortelboer, Marcel M. A. M. Mannens, and Angelique J. A. Kooper
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Neocentromere ,Marker chromosome ,False-negative NIPT ,Placental mosaicism ,Genetics ,QH426-470 - Abstract
Abstract In this case report, we describe a rare prenatal finding of a small marker chromosome. This marker chromosome corresponds to an inverted duplication of the 13q region 13q31.1q34 (or 13q31.1 → qter) with a neocentromere, detected during genetic analysis of a chorionic villus sample in a fetus with multiple congenital anomalies after a normal prenatal screening result by noninvasive prenatal testing.
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- 2023
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242. Spin-orbit coupled spin-polarised hole gas at the CrSe2-terminated surface of AgCrSe2
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Gesa-R. Siemann, Seo-Jin Kim, Edgar Abarca Morales, Philip A. E. Murgatroyd, Andela Zivanovic, Brendan Edwards, Igor Marković, Federico Mazzola, Liam Trzaska, Oliver J. Clark, Chiara Bigi, Haijing Zhang, Barat Achinuq, Thorsten Hesjedal, Matthew D. Watson, Timur K. Kim, Peter Bencok, Gerrit van der Laan, Craig M. Polley, Mats Leandersson, Hanna Fedderwitz, Khadiza Ali, Thiagarajan Balasubramanian, Marcus Schmidt, Michael Baenitz, Helge Rosner, and Phil D. C. King
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Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Atomic physics. Constitution and properties of matter ,QC170-197 - Abstract
Abstract In half-metallic systems, electronic conduction is mediated by a single spin species, offering enormous potential for spintronic devices. Here, using microscopic-area angle-resolved photoemission, we show that a spin-polarised two-dimensional hole gas is naturally realised in the polar magnetic semiconductor AgCrSe2 by an intrinsic self-doping at its CrSe2-terminated surface. Through comparison with first-principles calculations, we unveil a striking role of spin-orbit coupling for the surface hole gas, unlocked by both bulk and surface inversion symmetry breaking, suggesting routes for stabilising complex magnetic textures in the surface layer of AgCrSe2.
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- 2023
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243. Maternal adverse childhood experiences (ACEs) and DNA methylation of newborns in cord blood
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Phillip Collender, Anne K. Bozack, Stephanie Veazie, Jamaji C. Nwanaji-Enwerem, Lars Van Der Laan, Katherine Kogut, Corinne Riddell, Brenda Eskenazi, Nina Holland, Julianna Deardorff, and Andres Cardenas
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ACEs ,DNA methylation ,Adversity ,Epigenetic programming ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Adverse childhood experiences (ACEs) increase the risk of poor health outcomes later in life. Psychosocial stressors may also have intergenerational health effects by which parental ACEs are associated with mental and physical health of children. Epigenetic programming may be one mechanism linking parental ACEs to child health. This study aimed to investigate epigenome-wide associations of maternal preconception ACEs with DNA methylation patterns of children. In the Center for the Health Assessment of Mothers and Children of Salinas study, cord blood DNA methylation was measured using the Illumina HumanMethylation450 BeadChip. Preconception ACEs, which occurred during the mothers’ childhoods, were collected using a standard ACE questionnaire including 10 ACE indicators. Maternal ACE exposures were defined in this study as (1) the total number of ACEs; (2) the total number of ACEs categorized as 0, 1–3, and > 4; and (3) individual ACEs. Associations of ACE exposures with differential methylated positions, regions, and CpG modules determined using weighted gene co-expression network analysis were evaluated adjusting for covariates. Results Data on maternal ACEs and cord blood DNA methylation were available for 196 mother/newborn pairs. One differential methylated position was associated with maternal experience of emotional abuse (cg05486260/FAM135B gene; q value
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- 2023
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244. Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast
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Fridtjof Brauns, Leila Iñigo de la Cruz, Werner K.-G. Daalman, Ilse de Bruin, Jacob Halatek, Liedewij Laan, and Erwin Frey
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Science - Abstract
Abstract How can a self-organized cellular function evolve, adapt to perturbations, and acquire new sub-functions? To make progress in answering these basic questions of evolutionary cell biology, we analyze, as a concrete example, the cell polarity machinery of Saccharomyces cerevisiae. This cellular module exhibits an intriguing resilience: it remains operational under genetic perturbations and recovers quickly and reproducibly from the deletion of one of its key components. Using a combination of modeling, conceptual theory, and experiments, we propose that multiple, redundant self-organization mechanisms coexist within the protein network underlying cell polarization and are responsible for the module’s resilience and adaptability. Based on our mechanistic understanding of polarity establishment, we hypothesize that scaffold proteins, by introducing new connections in the existing network, can increase the redundancy of mechanisms and thus increase the evolvability of other network components. Moreover, our work gives a perspective on how a complex, redundant cellular module might have evolved from a more rudimental ancestral form.
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- 2023
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245. The accumulation of erythrocytes quantified and visualized by Glycophorin C in carotid atherosclerotic plaque reflects intraplaque hemorrhage and pre-procedural neurological symptoms
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Joost M. Mekke, Tim R. Sakkers, Maarten C. Verwer, Noortje A. M. van den Dungen, Yipei Song, Clint L. Miller, Aloke V. Finn, Gerard Pasterkamp, Michal Mokry, Hester M. den Ruijter, Aryan Vink, Dominique P. V. de Kleijn, Gert J. de Borst, Saskia Haitjema, and Sander W. van der Laan
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Medicine ,Science - Abstract
Abstract The accumulation of erythrocyte membranes within an atherosclerotic plaque may contribute to the deposition of free cholesterol and thereby the enlargement of the necrotic core. Erythrocyte membranes can be visualized and quantified in the plaque by immunostaining for the erythrocyte marker glycophorin C. Hence, we theorized that the accumulation of erythrocytes quantified by glycophorin C could function as a marker for plaque vulnerability, possibly reflecting intraplaque hemorrhage (IPH), and offering predictive value for pre-procedural neurological symptoms. We employed the CellProfiler-integrated slideToolKit workflow to visualize and quantify glycophorin C, defined as the total plaque area that is positive for glycophorin C, in single slides of culprit lesions obtained from the Athero-Express Biobank of 1819 consecutive asymptomatic and symptomatic patients who underwent carotid endarterectomy. Our assessment included the evaluation of various parameters such as lipid core, calcifications, collagen content, SMC content, and macrophage burden. These parameters were evaluated using a semi-quantitative scoring method, and the resulting data was dichotomized as predefined criteria into categories of no/minor or moderate/heavy staining. In addition, the presence or absence of IPH was also scored. The prevalence of IPH and pre-procedural neurological symptoms were 62.4% and 87.1%, respectively. The amount of glycophorin staining was significantly higher in samples from men compared to samples of women (median 7.15 (IQR:3.37, 13.41) versus median 4.06 (IQR:1.98, 8.32), p
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- 2023
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246. Identification of the rare deep-dwelling goby Suruga fundicola Jordan & Snyder, 1901 (Gobiiformes, Gobiidae) from the Yellow Sea
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Changting An, Ang Li, Huan Wang, Busu Li, Kaiying Liu, Hongyue Sun, Shufang Liu, Zhimeng Zhuang, and Richard van der Laan
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Biology (General) ,QH301-705.5 - Abstract
During the 2022 R/V cruises in the Yellow Sea, four goby specimens (51.2‒63.5 mm) were captured by using an Agassiz trawl at a water depth of about 70 meters. These specimens were identified as Suruga fundicola, mainly by the morphometric characters. Their identification was further confirmed by a molecular phylogenetic analysis based on 12S and COI mtDNA genes. Considering that the four specimens were in good condition and that the original description is brief, a detailed description of the specimens is given. Moreover, the present study presents a preliminary analysis of its phylogenetic position within the Acanthogobius-lineage (Gobiidae). The discovery of this goby in the Yellow Sea enriches our knowledge of the fish diversity and distribution of this region, and sheds some light on the ecological habitat of these gobies.
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- 2023
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247. Is this work? Revisiting the definition of work in the 21st century
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Luke van der Laan, Gail Ormsby, Lee Fergusson, and Peter McIlveen
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Work ,Definition of work ,Meaning of work ,Workplace ,Employment ,Social Sciences - Abstract
Purpose – The purpose of the study was to specify the perceived outdated nature and lack of definitional clarity associated with the concept of work and further to outline that the nature of work has dramatically changed in the 21st century, while definitions of work referenced in research remain those that were dominant in the previous century. Lastly, the study aimed to propose an updated conceptualisation and definition of work to aid future research. Design/methodology/approach – A scoping literature review was adopted as the methodology guiding the study. A scoping review is particularly suited to identifying the conceptual boundaries on a given multi-disciplinary topic and is used to map the key concepts underpinning a research area as well as to clarify working definitions. Findings – Nine main themes underpinning the concept of work were extracted from the extant literature. These were assimilated with contemporary literature across multiple disciplines. Contexts of work as they relate to dimensions of work and workspace are developed and visualised. A proposed contemporary definition of work is presented. Research limitations/implications – The aim of the study was to address the problem with current and future research continuing to refer to traditional conceptualisations of work, while the nature of work has dramatically changed. The findings are preliminary and intended to stimulate further discourse towards a greater consensus of a definition. The implications of proposing an updated definition of work is that it is intended to better inform future research reflective of its multi-disciplinary and significantly changed nature. Practical implications – The implications to practice are the main impetus of this study. The authors found that research associated with work was being confounded by traditional and outdated interpretations, excluding alternative forms of work or not recognising its multi-dimensionality. It is proposed by the paper that an updated conceptualisation of the nature of work in this era, as it is reflected across disciplines and practice, would positively contribute to the understanding, management and conceptualisation of work in practice. Originality/value – A systematic literature review across disciplines of the definition of work will reveal the outdated nature and disparate interpretation of the concept of work. An inclusive, multi-disciplinary and contemporary definition of work has not been suggested. This scoping review was conducted to address this problem and gap in the literature. Further, this paper presents a multi-dimensional and spatial conceptualisation of work that is proposed to better inform future research and practice associated with work.
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- 2023
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248. Altimetry-derived tide model for improved tide and water level forecasting along the European continental shelf
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Hart-Davis, Michael G., Laan, Stendert, Schwatke, Christian, Backeberg, Björn, Dettmering, Denise, Zijl, Firmijn, Verlaan, Martin, Passaro, Marcello, and Seitz, Florian
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- 2023
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249. Applying genomics in regulatory toxicology: a report of the ECETOC workshop on omics threshold on non-adversity
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Gant, Timothy W., Auerbach, Scott S., Von Bergen, Martin, Bouhifd, Mounir, Botham, Philip A., Caiment, Florian, Currie, Richard A., Harrill, Joshua, Johnson, Kamin, Li, Dongying, Rouquie, David, van Ravenzwaay, Ben, Sistare, Frank, Tralau, Tewes, Viant, Mark R., van de Laan, Jan Willem, and Yauk, Carole
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- 2023
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250. The relation between hypoxia and proliferation biomarkers with radiosensitivity in locally advanced laryngeal cancer
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van den Bovenkamp, Karlijn, van der Vegt, Bert, Halmos, Gyorgy B., Slagter-Menkema, Lorian, Langendijk, Johannes A., van Dijk, Boukje A. C., Schuuring, Ed, and van der Laan, Bernard F. A. M.
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- 2023
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