3,349 results on '"K Nomura"'
Search Results
202. Biological Effects of Spot Scanning and Passive Scattering Proton Beams at the Distal End of the Spread-Out Bragg Peak (SOBP) in Single Cells and Multicell Spheroids
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J. Nagayoshi, Hiromitsu Iwata, Chihiro Omachi, Toshiyuki Toshito, Yuta Shibamoto, Shingo Hashimoto, K. Nakajima, K. Nomura, and Hiroyuki Ogino
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Cancer Research ,Radiation ,Proton ,business.industry ,Multicell spheroids ,Scattering ,Sobp ,Bragg peak ,Optics ,Oncology ,Medicine ,Radiology, Nuclear Medicine and imaging ,business ,Spot scanning - Published
- 2019
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203. MON-307 COOKING PRACTICES RELIEVE UNEASINESS FOR THE DISEASE AND DIET THERAPY IN PATIENTS WITH CHRONIC KIDNEY DISEASE
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K. Nomura, M. Shigemori, C. Kanbara, S. Sugiyama, K. Takahashi, A. Sasaki, H. Oda, T. Masaki, K. Kita, and M. Ikeda
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medicine.medical_specialty ,Cooking Practices ,Nephrology ,Diet therapy ,business.industry ,Internal medicine ,medicine ,In patient ,Disease ,medicine.disease ,business ,Kidney disease - Published
- 2019
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204. Mechanical characterization of a high elongation and high toughness epoxy adhesive
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F. J. P. Chaves, T. Ueda, Rjc Carbas, D.F.S. Saldanha, K. Nomura, L.F.M. da Silva, and C. Canto
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Biomaterials ,Shear (sheet metal) ,Toughness ,Lap joint ,Materials science ,Polymers and Plastics ,General Chemical Engineering ,Ultimate tensile strength ,Adhesive ,Dynamic mechanical analysis ,Composite material ,Elongation ,Tensile testing - Abstract
In this paper, a new epoxy adhesive has been mechanically characterized. The adhesive combines the properties of an epoxy adhesive and typical polyurethane (PU) adhesive, such as high elongation and high toughness. Experimental tests were performed to measure the tensile properties, shear properties, thermal properties and fracture properties. The tensile test shows high tensile strength and high elongation. The single lap joint (SLJ) test shows that the failure load is proportional to the overlap length for hard steel adherends. For the SLJs with mild steel adherends, the failure occurred due to adherend yielding. Impact tests were conducted using SLJ specimens and the results are consistent with the SLJ tested under static conditions. The Tg was obtained using a Dynamic Mechanical Analysis (DMA) type of test. The toughness in mode I was determined using the Double Cantilever Beam (DCB) test and the toughness in mode II using End Notched Flexure (ENF) test.
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- 2013
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205. Multidimensional Profiling Platforms Reveal Metabolic Dysregulation Caused by Organophosphorus Pesticides
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Patrick J. Morris, Daniel K. Nomura, Daniel Medina-Cleghorn, Melinda M. Mulvihill, and Ann Heslin
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Male ,Proteomics ,Serine Proteinase Inhibitors ,Proteome ,Biology ,Biochemistry ,Article ,Mice ,Organophosphorus Compounds ,Metabolomics ,In vivo ,Adverse health effect ,Metabolome ,Animals ,Pesticides ,Extramural ,General Medicine ,Pesticide ,Lipid Metabolism ,Mice, Inbred C57BL ,Molecular Medicine ,Serine Proteases ,Organophosphorus pesticides - Abstract
We are environmentally exposed to countless synthetic chemicals on a daily basis with an increasing number of these chemical exposures linked to adverse health effects. However, our understanding of the (patho)physiological effects of these chemicals remains poorly understood, due in-part to a general lack of effort to systematically and comprehensively identify the direct interactions of environmental chemicals with biological macromolecules in mammalian systems in vivo. Here, we have used functional chemoproteomic and metabolomic platforms to broadly identify direct enzyme targets that are inhibited by widely used organophosphorus (OP) pesticides in vivo in mice and to determine metabolic alterations that are caused by these chemicals. We find that these pesticides directly inhibit over 20 serine hydrolases in vivo leading to widespread disruptions in lipid metabolism. Through identifying direct biological targets of OP pesticides, we show heretofore unrecognized modes of toxicity that may be associated with these agents and underscore the utility of utilizing multidimensional profiling approaches to obtain a more complete understanding of toxicities associated with environmental chemicals.
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- 2013
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206. Mechanisms linking obesity and cancer
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Lindsay S. Roberts, Daniel K. Nomura, and Sharon M. Louie
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Inflammation ,medicine.medical_specialty ,Cancer ,Adipokine ,Lipid metabolism ,Cell Biology ,Type 2 diabetes ,White adipose tissue ,Biology ,medicine.disease ,Bioinformatics ,Lipids ,Obesity ,Article ,Insulin resistance ,Adipokines ,Neoplasms ,Immunology ,Epidemiology ,medicine ,Humans ,Insulin Resistance ,Molecular Biology ,Signal Transduction - Abstract
The incidence of obesity in US adults has been steadily increasing over the past few decades. Many comorbidities associated with obesity have been well-established such as type 2 diabetes and cardiovascular diseases. However, more recently an epidemiological relationship between obesity and the prevalence of a variety of cancers has also been uncovered. The shift of the paradigm surrounding white adipose tissue function from purely an energy storage tissue, to one that has both endocrine and metabolic relevance, has led to several mechanisms implicated in how obesity drives cancer prevalence and cancer deaths. Currently, there are four categories into which these mechanisms fall - increased lipids and lipid signaling, inflammatory responses, insulin resistance, and adipokines. In this review, we examine each of these categories and the mechanisms through which they drive cancer pathogenesis. Understanding the relationship(s) between obesity and cancer and especially the nodal points of control in these cascades will be essential in developing effective therapeutics or interventions for combating this deadly combination. This article is part of a Special Issue entitled Lipid Metabolism in Cancer.
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- 2013
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207. Ether lipid generating enzyme AGPS alters the balance of structural and signaling lipids to fuel cancer pathogenicity
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Lindsay S. Roberts, Daniel K. Nomura, Kunxin Luo, Alyssa J. Cozzo, Melinda M. Mulvihill, Daniel I. Benjamin, Xiaodan Ji, and Sharon M. Louie
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Male ,Biology ,chemistry.chemical_compound ,Cell Line, Tumor ,Neoplasms ,medicine ,Humans ,Neoplasm Invasiveness ,chemistry.chemical_classification ,Alkyl and Aryl Transferases ,Multidisciplinary ,Fatty Acids ,Fatty acid ,Cancer ,Lipid metabolism ,Biological Sciences ,Lipid Metabolism ,medicine.disease ,Cell biology ,Enzyme ,Ether lipid ,chemistry ,Eicosanoid ,Biochemistry ,Gene Knockdown Techniques ,Cancer cell ,Metabolome ,Female ,lipids (amino acids, peptides, and proteins) ,Signal transduction ,Ethers ,Signal Transduction - Abstract
Aberrant lipid metabolism is an established hallmark of cancer cells. In particular, ether lipid levels have been shown to be elevated in tumors, but their specific function in cancer remains elusive. We show here that the metabolic enzyme alkylglyceronephosphate synthase (AGPS), a critical step in the synthesis of ether lipids, is up-regulated across multiple types of aggressive human cancer cells and primary tumors. We demonstrate that ablation of AGPS in cancer cells results in reduced cell survival, cancer aggressiveness, and tumor growth through altering the balance of ether lipid, fatty acid, eicosanoid, and fatty acid-derived glycerophospholipid metabolism, resulting in an overall reduction in the levels of several oncogenic signaling lipids. Taken together, our results reveal that AGPS, in addition to maintaining ether lipids, also controls cellular utilization of fatty acids, favoring the generation of signaling lipids necessary for promoting the aggressive features of cancer.
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- 2013
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208. Cs sorption by 'soluble' and 'insoluble' iron hexacyanocobaltates probed by Mössbauer spectroscopy
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J. Wang, A. I. Rykov, K. Nomura, and T. Zhang
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Nuclear and High Energy Physics ,Prussian blue ,Materials science ,Ionic bonding ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,Spectral line ,Ion ,Crystallography ,chemistry.chemical_compound ,chemistry ,Quadrupole ,Condensed Matter::Strongly Correlated Electrons ,Singlet state ,Physical and Theoretical Chemistry ,Ground state ,Valence electron - Abstract
We report on the mixed-orbital ground state compounds analogous to the mixed-valence ones. Orbital doublet and singlet ground states of the Fe2+ ion displayed in Moessbauer spectra of the Prussian blue analogues AyFe3-y[Co(CN)6]2xH2O (y
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- 2013
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209. Chemical approaches to study metabolic networks
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Daniel K. Nomura and Daniel Medina-Cleghorn
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Physiology ,Clinical Biochemistry ,Disease progression ,Metabolic network ,Computational biology ,Disease ,Biology ,Bioinformatics ,Proteomics ,Metabolic pathway ,Metabolomics ,Cell metabolism ,Physiology (medical) ,Metabolic flux analysis - Abstract
One of the more provocative realizations that have come out of the genome sequencing projects is that organisms possess a large number of uncharacterized or poorly characterized enzymes. This finding belies the commonly held notion that our knowledge of cell metabolism is nearly complete, underscoring the vast landscape of unannotated metabolic and signaling networks that operate under normal physiological conditions, let alone in disease states where metabolic networks may be rewired, dysregulated, or altered to drive disease progression. Consequently, the functional annotation of enzymatic pathways represents a grand challenge for researchers in the post-genomic era. This review will highlight the chemical technologies that have been successfully used to characterize metabolism, and put forth some of the challenges we face as we expand our map of metabolic pathways.
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- 2013
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210. Biosynthesis and Regulation of Sulfomenaquinone, a Metabolite Associated with Virulence in Mycobacterium tuberculosis
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Daniel K. Nomura, Gabriela K. Fragiadakis, Kimberly M. Sogi, Cynthia M. Holsclaw, Carolyn R. Bertozzi, and Julie A. Leary
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0301 basic medicine ,Tuberculosis ,Operon ,Mutant ,Virulence ,01 natural sciences ,Article ,Microbiology ,Mycobacterium tuberculosis ,03 medical and health sciences ,Mice ,Bacterial Proteins ,medicine ,Animals ,Humans ,Gene ,biology ,010405 organic chemistry ,Cytochrome P450 ,Vitamin K 2 ,biology.organism_classification ,medicine.disease ,Phenotype ,0104 chemical sciences ,030104 developmental biology ,Infectious Diseases ,biology.protein - Abstract
Sulfomenaquinone (SMK) is a recently identified metabolite that is unique to the Mycobacterium tuberculosis (M. tuberculosis) complex and is shown to modulate its virulence. Here, we report the identification of the SMK biosynthetic operon that, in addition to a previously identified sulfotransferase stf 3, includes a putative cytochrome P450 gene (cyp128) and a gene of unknown function, rv2269c. We demonstrate that cyp128 and stf 3 are sufficient for the biosynthesis of SMK from menaquinone and rv2269c exhibits promoter activity in M. tuberculosis. Loss of Stf3 expression, but not that of Cyp128, is correlated with elevated levels of menaquinone-9, an essential component in the electron-transport chain in M. tuberculosis. Finally, we showed in a mouse model of infection that the loss of cyp128 exhibits a hypervirulent phenotype similar to that in previous studies of the stf 3 mutant. These findings provide a platform for defining the molecular basis of SMK’s role in M. tuberculosis pathogenesis.
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- 2016
211. Near-future Memory Hierarchy with Emerging Nonvolatile Memories and a Case Study of e-STT-MRAM Applications
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S. Fujita, S. Takeda, H. Noguchi, K. Nomura, K. Abe, and Kazutaka Ikegami
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Magnetoresistive random-access memory ,Materials science ,Computer architecture ,Memory hierarchy - Published
- 2016
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212. Cellobiose consumption uncouples extracellular glucose sensing and glucose metabolism inSaccharomyces cerevisiae
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Daniel I. Benjamin, Jamie H. D. Cate, Kulika Chomvong, and Daniel K. Nomura
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chemistry.chemical_classification ,0303 health sciences ,biology ,030306 microbiology ,Saccharomyces cerevisiae ,biology.organism_classification ,Energy homeostasis ,Carbon utilization ,Cell biology ,03 medical and health sciences ,chemistry ,Glycolysis ,Fermentation ,Flux (metabolism) ,Amino acid synthesis ,Homeostasis ,030304 developmental biology - Abstract
Glycolysis is central to energy metabolism in most organisms, and is highly regulated to enable optimal growth. In the yeastSaccharomyces cerevisiae, feedback mechanisms that control flux through glycolysis span transcriptional control to metabolite levels in the cell. Using a cellobiose consumption pathway, we decoupled glucose sensing from carbon utilization, revealing new modular layers of control that induce ATP consumption to drive rapid carbon fermentation. Alterations of the beta subunit of phosphofructokinase (PFK2), H+-plasma membrane ATPase (PMA1), and glucose sensors(SNF3, RGT2)revealed the importance of coupling extracellular glucose sensing to manage ATP levels in the cell. Controlling the upper bound of cellular ATP levels may be a general mechanism used to regulate energy levels in cells, via a regulatory network that can be uncoupled from ATP concentrations under perceived starvation conditions.ImportanceLiving cells are fine-tuned through evolution to thrive in their native environments. Genome alterations to create organisms for specific biotechnological applications may result in unexpected and undesired phenotypes. We used a minimal synthetic biological system in the yeastSaccharomyces cerevisiaeas a platform to reveal novel connections between carbon sensing, starvation conditions and energy homeostasis.
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- 2016
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213. Mapping Proteome-wide Targets of Glyphosate in Mice
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Breanna Ford, Leilani Gutierrez-Palominos, Robin Park, Daniel K. Nomura, and Leslie A. Bateman
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0301 basic medicine ,Male ,Proteomics ,Clinical Biochemistry ,Glyoxylate cycle ,Glycine ,Protein Array Analysis ,010501 environmental sciences ,Biology ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Structure-Activity Relationship ,Drug Discovery ,Animals ,Chemoproteomics ,Molecular Biology ,Beta oxidation ,0105 earth and related environmental sciences ,Pharmacology ,Dose-Response Relationship, Drug ,Herbicides ,Fatty Acids ,Activity-based proteomics ,Proteins ,Lipid metabolism ,Pesticide ,Mice, Inbred C57BL ,030104 developmental biology ,chemistry ,Glyphosate ,Molecular Medicine - Abstract
Glyphosate, the active ingredient in the herbicide Roundup, is one of the most widely used pesticides in agriculture and home garden use. Whether glyphosate causes any mammalian toxicity remains highly controversial. While many studies have associated glyphosate with numerous adverse health effects, the mechanisms underlying glyphosate toxicity in mammals remain poorly understood. Here, we used activity-based protein profiling to map glyphosate targets in mice. We show that glyphosate at high doses can be metabolized in vivo to reactive metabolites such as glyoxylate and react with cysteines across many proteins in mouse liver. We show that glyoxylate inhibits liver fatty acid oxidation enzymes and glyphosate treatment in mice increases the levels of triglycerides and cholesteryl esters, likely resulting from diversion of fatty acids away from oxidation and toward other lipid pathways. Our study highlights the utility of using chemoproteomics to identify novel toxicological mechanisms of environmental chemicals such as glyphosate.
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- 2016
214. Human Carboxylesterase 2 Reverses Obesity-Induced Diacylglycerol Accumulation and Glucose Intolerance
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Sharon M. Louie, Daniel K. Nomura, Devon M. Hunerdosse, Jorge L. Ruas, Juleen R. Zierath, Erik Näslund, Milena Schönke, Julie Massart, Jorge C. Correia, and Maxwell A. Ruby
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0301 basic medicine ,Male ,obesity ,Diacylglycerol lipase ,Carboxylesterase ,Mice ,0302 clinical medicine ,insulin resistance ,Insulin ,lcsh:QH301-705.5 ,Cells, Cultured ,diacylglycerol ,TOR Serine-Threonine Kinases ,hepatic steatosis ,Serine hydrolase ,Endoplasmic Reticulum Stress ,030220 oncology & carcinogenesis ,medicine.medical_specialty ,Genetic Vectors ,Biology ,Diet, High-Fat ,General Biochemistry, Genetics and Molecular Biology ,Article ,serine hydrolase ,Diglycerides ,03 medical and health sciences ,Insulin resistance ,Lipid oxidation ,Internal medicine ,Glucose Intolerance ,medicine ,Animals ,Humans ,Diacylglycerol kinase ,activity-based protein profiling ,medicine.disease ,Mice, Inbred C57BL ,030104 developmental biology ,Endocrinology ,Glucose ,lcsh:Biology (General) ,inflammation ,biology.protein ,Hepatocytes ,Insulin Receptor Substrate Proteins ,lipidomics ,Lipid Peroxidation ,Steatosis ,Arylacetamide deacetylase ,biology.gene ,Carboxylic Ester Hydrolases - Abstract
Summary Serine hydrolases are a large family of multifunctional enzymes known to influence obesity. Here, we performed activity-based protein profiling to assess the functional level of serine hydrolases in liver biopsies from lean and obese humans in order to gain mechanistic insight into the pathophysiology of metabolic disease. We identified reduced hepatic activity of carboxylesterase 2 (CES2) and arylacetamide deacetylase (AADAC) in human obesity. In primary human hepatocytes, CES2 knockdown impaired glucose storage and lipid oxidation. In mice, obesity reduced CES2, whereas adenoviral delivery of human CES2 reversed hepatic steatosis, improved glucose tolerance, and decreased inflammation. Lipidomic analysis identified a network of CES2-regulated lipids altered in human and mouse obesity. CES2 possesses triglyceride and diacylglycerol lipase activities and displayed an inverse correlation with HOMA-IR and hepatic diacylglycerol concentrations in humans. Thus, decreased CES2 is a conserved feature of obesity and plays a causative role in the pathogenesis of obesity-related metabolic disturbances., Graphical Abstract, Highlights • Obesity decreases hepatic activity of AADAC and CES2 in humans • CES2 depletion impairs lipid and glucose metabolism in primary human hepatocytes • Human CES2 expression reverses hepatic steatosis and glucose intolerance in mice • CES2 controls a hepatic lipid network dysregulated in human and mouse obesity, Ruby et al. utilize activity-based protein profiling to discover decreased arylacetamide deacetylase and carboxylesterase 2 activities in livers from obese humans. Carboxylesterase 2 controls a lipid network dysregulated in human obesity to reverse hepatic steatosis, glucose intolerance, and decrease inflammation in high-fat fed mice.
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- 2016
215. Protein Sialylation Regulates a Gene Expression Signature that Promotes Breast Cancer Cell Pathogenicity
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Andrei Goga, Nir Yosef, Daniel K. Nomura, Lindsay S. Roberts, David DeTomaso, Lara Bideyan, Peter Yan, Sourav Bandyopadhyay, and Rebecca A. Kohnz
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0301 basic medicine ,Cytidine monophosphate ,Breast Neoplasms ,Mice, SCID ,Biology ,Biochemistry ,Transcriptome ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Cell Line, Tumor ,Animals ,Humans ,Metabolomics ,Glycolysis ,Letters ,Regulation of gene expression ,Gene knockdown ,N-Acylneuraminate Cytidylyltransferase ,General Medicine ,N-Acetylneuraminic Acid ,Sialic acid ,Neoplasm Proteins ,carbohydrates (lipids) ,Gene Expression Regulation, Neoplastic ,Metabolic pathway ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Protein sialylation ,Gene Knockdown Techniques ,Molecular Medicine ,Heterografts ,Female - Abstract
Many mechanisms have been proposed for how heightened aerobic glycolytic metabolism fuels cancer pathogenicity, but there are still many unexplored pathways. Here, we have performed metabolomic profiling to map glucose incorporation into metabolic pathways upon transformation of mammary epithelial cells by 11 commonly mutated human oncogenes. We show that transformation of mammary epithelial cells by oncogenic stimuli commonly shunts glucose-derived carbons into synthesis of sialic acid, a hexosamine pathway metabolite that is converted to CMP-sialic acid by cytidine monophosphate N-acetylneuraminic acid synthase (CMAS) as a precursor to glycoprotein and glycolipid sialylation. We show that CMAS knockdown leads to elevations in intracellular sialic acid levels, a depletion of cellular sialylation, and alterations in the expression of many cancer-relevant genes to impair breast cancer pathogenicity. Our study reveals the heretofore unrecognized role of sialic acid metabolism and protein sialylation in regulating the expression of genes that maintain breast cancer pathogenicity.
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- 2016
216. GSTP1 Is a Driver of Triple-Negative Breast Cancer Cell Metabolism and Pathogenicity
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Lisa A. Crawford, Lucky Ding, Tucker R. Huffman, Andrei Goga, Elizabeth A. Grossman, Eranthie Weerapana, Roman Camarda, Daniel K. Nomura, Sharon M. Louie, and David K. Miyamoto
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0301 basic medicine ,Clinical Biochemistry ,Antineoplastic Agents ,Triple Negative Breast Neoplasms ,Biology ,medicine.disease_cause ,Biochemistry ,Article ,Dose-Response Relationship ,03 medical and health sciences ,GSTP1 ,Mice ,Experimental ,Structure-Activity Relationship ,Breast cancer ,Leucine ,Neoplasms ,Drug Discovery ,Breast Cancer ,medicine ,Tumor Cells, Cultured ,Animals ,Humans ,2.1 Biological and endogenous factors ,Enzyme Inhibitors ,Aetiology ,Molecular Biology ,Triple-negative breast cancer ,Cancer ,Nutrition ,Pharmacology ,Cultured ,Dose-Response Relationship, Drug ,Molecular Structure ,Triazines ,Lipid metabolism ,Neoplasms, Experimental ,medicine.disease ,Tumor Cells ,030104 developmental biology ,Cell metabolism ,Glutathione S-Transferase pi ,Cancer research ,Molecular Medicine ,Drug ,Carcinogenesis - Abstract
Breast cancers possess fundamentally altered metabolism that fuels their pathogenicity. While many metabolic drivers of breast cancers have been identified, the metabolic pathways that mediate breast cancer malignancy and poor prognosis are less well understood. Here, we used a reactivity-based chemoproteomic platform to profile metabolic enzymes that are enriched in breast cancer cell types linked to poor prognosis, including triple-negative breast cancer (TNBC) cells and breast cancer cells that have undergone an epithelial-mesenchymal transition-like state of heightened malignancy. We identified glutathione S-transferase Pi 1 (GSTP1) as a novel TNBC target that controls cancer pathogenicity by regulating glycolytic and lipid metabolism, energetics, and oncogenic signaling pathways through a protein interaction that activates glyceraldehyde-3-phosphate dehydrogenase activity. We show that genetic or pharmacological inactivation of GSTP1 impairs cell survival and tumorigenesis inTNBC cells. We put forth GSTP1 inhibitors as a noveltherapeutic strategy for combatting TNBCs through impairing key cancer metabolism and signaling pathways.
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- 2016
217. Spermatogonial Nature of the Germ Cell Component of Canine Testicular Mixed Germ Cell-Sex Cord Stromal Tumours
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Noboru Machida, Makoto Shibutani, T Tanaka, Tomoaki Murakami, Toshinori Yoshida, K Nomura, and S Mizukami
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Male ,endocrine system ,Pathology ,medicine.medical_specialty ,040301 veterinary sciences ,Population ,Sex Cord-Gonadal Stromal Tumors ,Periodic acid–Schiff stain ,Biology ,Pathology and Forensic Medicine ,0403 veterinary science ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,Testicular Neoplasms ,SALL4 ,medicine ,Biomarkers, Tumor ,Animals ,Dog Diseases ,education ,education.field_of_study ,030219 obstetrics & reproductive medicine ,General Veterinary ,04 agricultural and veterinary sciences ,Neoplasms, Germ Cell and Embryonal ,Sertoli cell ,Phenotype ,Molecular biology ,Immunohistochemistry ,Spermatozoa ,medicine.anatomical_structure ,Placental alkaline phosphatase ,Germ cell - Abstract
The present study has characterized the germ cell component of canine testicular mixed germ cell-sex cord stromal tumours (MGSCTs) by examining the histological nature and histochemical and immunohistochemical features using gonocytic and spermatogonial cellular markers, c-Kit, placental alkaline phosphatase (PLAP), protein gene product 9.5 (PGP9.5), Sal-like protein 4 (SALL4), and the periodic acid-Schiff (PAS) reaction. Histologically, all 45 examples of MGSCTs were classified as spermatocytic seminomas (SSs) and Sertoli cell tumours in combination. The germ cell component of all MGSCTs was negative by PAS staining. Immunohistochemically, PLAP immunoreactivity was lacking in the germ cell component of all MGSCTs, which is not consistent with a gonocytic origin. The germ cell component was positive for PGP9.5 and SALL4 in all MGSCTs and positive for c-Kit in 53% of MGSCTs, which is consistent with the phenotype of spermatogonia. Furthermore, the germ cell component in 71% of MGSCTs had moderate immunoreactivity for SALL4, which is suggestive of a spermatogonial phenotype. Conversely, 29% of cases had a minor population of germ cells showing strong SALL4 immunoreactivity, suggesting a phenotype similar to prespermatogonia. The results suggest that the germ cell component of canine MGSCTs is morphologically classified as SS, with the majority of cases showing the spermatogonial phenotype and some cases containing a small population of prespermatogonia.
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- 2016
218. Bypassing the Pentose Phosphate Pathway: Towards Modular Utilization of Xylose
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Jamie H. D. Cate, Xin Li, Daniel K. Nomura, Kulika Chomvong, Stefan Bauer, and Daniel I. Benjamin
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0301 basic medicine ,Metabolic Processes ,Formates ,lcsh:Medicine ,Pentose ,Yeast and Fungal Models ,Plant Science ,Xylose ,Biochemistry ,Pentose Phosphate Pathway ,chemistry.chemical_compound ,Glycols ,Xylose metabolism ,Gene Expression Regulation, Fungal ,Plant Hormones ,lcsh:Science ,chemistry.chemical_classification ,Glycolaldehyde ,Multidisciplinary ,Organic Compounds ,Plant Biochemistry ,Monosaccharides ,Phosphotransferases (Alcohol Group Acceptor) ,Chemistry ,Physical Sciences ,Metabolic Networks and Pathways ,Research Article ,Pentoses ,Carbohydrates ,Saccharomyces cerevisiae ,Biology ,Pentose phosphate pathway ,Research and Analysis Methods ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,Saccharomyces ,Ethylene ,Model Organisms ,Hemicellulose ,Dihydroxyacetone phosphate ,Ethanol ,lcsh:R ,Organic Chemistry ,Chemical Compounds ,Organisms ,Fungi ,Biology and Life Sciences ,Yeast ,Hormones ,030104 developmental biology ,Metabolism ,chemistry ,Alcohols ,Fermentation ,Mutation ,lcsh:Q - Abstract
The efficient use of hemicellulose in the plant cell wall is critical for the economic conversion of plant biomass to renewable fuels and chemicals. Previously, the yeast Saccharomyces cerevisiae has been engineered to convert the hemicellulose-derived pentose sugars xylose and arabinose to d-xylulose-5-phosphate for conversion via the pentose phosphate pathway (PPP). However, efficient pentose utilization requires PPP optimization and may interfere with its roles in NADPH and pentose production. Here, we developed an alternative xylose utilization pathway that largely bypasses the PPP. In the new pathway, d-xylulose is converted to d-xylulose-1-phosphate, a novel metabolite to S. cerevisiae, which is then cleaved to glycolaldehyde and dihydroxyacetone phosphate. This synthetic pathway served as a platform for the biosynthesis of ethanol and ethylene glycol. The use of d-xylulose-1-phosphate as an entry point for xylose metabolism opens the way for optimizing chemical conversion of pentose sugars in S. cerevisiae in a modular fashion.
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- 2016
219. Measurement and comparison of individual external doses of high-school students living in Japan, France, Poland and Belarus - The 'D-shuttle' project - The '
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N Adachi, V Adamovitch, Y Adjovi, K Aida, H Akamatsu, S Akiyama, A Akli, A Ando, T Andrault, H Antonietti, S Anzai, G Arkoun, C Avenoso, D Ayrault, M Banasiewicz, M Banaśkiewicz, L Bernardini, E Bernard, E Berthet, M Blanchard, D Boreyko, K Boros, S Charron, P Cornette, K Czerkas, M Dameron, I Date, M De Pontbriand, F Demangeau, ł Dobaczewski, L Dobrzyński, A Ducouret, M Dziedzic, A Ecalle, V Edon, K Endo, T Endo, Y Endo, D Etryk, M Fabiszewska, S Fang, D Fauchier, F Felici, Y Fujiwara, C Gardais, W Gaul, L Gurin, R Hakoda, I Hamamatsu, K Handa, H Haneda, T Hara, M Hashimoto, T Hashimoto, K Hashimoto, D Hata, M Hattori, R Hayano, R Hayashi, H Higasi, M Hiruta, A Honda, Y Horikawa, H Horiuchi, Y Hozumi, M Ide, S Ihara, T Ikoma, Y Inohara, M Itazu, A Ito, J Janvrin, I Jout, H Kanda, G Kanemori, M Kanno, N Kanomata, T Kato, S Kato, J Katsu, Y Kawasaki, K Kikuchi, P Kilian, N Kimura, M Kiya, M Klepuszewski, E Kluchnikov, Y Kodama, R Kokubun, F Konishi, A Konno, V Kontsevoy, A Koori, A Koutaka, A Kowol, Y Koyama, M Kozioł, M Kozue, O Kravtchenko, W Kruczała, M Kudła, H Kudo, R Kumagai, K Kurogome, A Kurosu, M Kuse, A Lacombe, E Lefaillet, M Magara, J Malinowska, M Malinowski, V Maroselli, Y Masui, K Matsukawa, K Matsuya, B Matusik, M Maulny, P Mazur, C Miyake, Y Miyamoto, K Miyata, M Miyazaki, M Molȩda, T Morioka, E Morita, K Muto, H Nadamoto, M Nadzikiewicz, K Nagashima, M Nakade, C Nakayama, H Nakazawa, Y Nihei, R Nikul, S Niwa, O Niwa, M Nogi, K Nomura, D Ogata, H Ohguchi, J Ohno, M Okabe, M Okada, Y Okada, N Omi, H Onodera, K Onodera, S Ooki, K Oonishi, H Oonuma, H Ooshima, H Oouchi, M Orsucci, M Paoli, M Penaud, C Perdrisot, M Petit, A Piskowski, A Płocharski, A Polis, L Polti, T Potsepnia, D Przybylski, M Pytel, W Quillet, A Remy, C Robert, M Sadowski, M Saito, D Sakuma, K Sano, Y Sasaki, N Sato, T Schneider, C Schneider, K Schwartzman, E Selivanov, M Sezaki, K Shiroishi, I Shustava, A Śniecińska, E Stalchenko, A Staroń, M Stromboni, W Studzińska, H Sugisaki, T Sukegawa, M Sumida, Y Suzuki, K Suzuki, R Suzuki, H Suzuki, W Świderski, M Szudejko, M Szymaszek, J Tada, H Taguchi, K Takahashi, D Tanaka, G Tanaka, S Tanaka, K Tanino, K Tazbir, N Tcesnokova, N Tgawa, N Toda, H Tsuchiya, H Tsukamoto, T Tsushima, K Tsutsumi, H Umemura, M Uno, A Usui, H Utsumi, M Vaucelle, Y Wada, K Watanabe, S Watanabe, K Watase, M Witkowski, T Yamaki, J Yamamoto, T Yamamoto, M Yamashita, M Yanai, K Yasuda, Y Yoshida, A Yoshida, K Yoshimura, M Żmijewska, E Zuclarelli, Fukushima Medical University (FMU), National Centre for Nuclear Research [Otwock], Narodowe Centrum Badań Jądrowych (NCBJ), Centre d’étude sur l’Evaluation de la Protection dans le domaine Nucléaire (CEPN), and Institut de Radioprotection et de Sûreté Nucléaire (IRSN)
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Male ,student ,Republic of Belarus ,Range (biology) ,[SDV]Life Sciences [q-bio] ,education ,FOS: Physical sciences ,Electronic Personal Dosimeter ,Radiation Dosage ,030218 nuclear medicine & medical imaging ,Education ,Electronic personal dosimeters ,03 medical and health sciences ,0302 clinical medicine ,Annual dose ,Radiation Monitoring ,Fukushima Nuclear Accident ,Humans ,human ,Fukushima ,Students ,Waste Management and Disposal ,International comparison ,comparative study ,High school students ,Teaching ,Public Health, Environmental and Occupational Health ,Belarus ,General Medicine ,Physics - Medical Physics ,External dose ,Geography ,female ,030220 oncology & carcinogenesis ,Background radiation ,Residence ,Individual dose ,Medical Physics (physics.med-ph) ,France ,Poland ,radiation dose ,Demography - Abstract
Twelve high schools in Japan (of which six are in Fukushima Prefecture), four in France, eight in Poland and two in Belarus cooperated in the measurement and comparison of individual external doses in 2014. In total 216 high-school students and teachers participated in the study. Each participant wore an electronic personal dosimeter 'D-shuttle' for two weeks, and kept a journal of his/her whereabouts and activities. The distributions of annual external doses estimated for each region overlap with each other, demonstrating that the personal external individual doses in locations where residence is currently allowed in Fukushima Prefecture and in Belarus are well within the range of estimated annual doses due to the terrestrial background radiation level of other regions/countries. © 2016 IOP Publishing Ltd.
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- 2016
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220. HIF-1α Is an Essential Mediator of IFN-γ-Dependent Immunity to Mycobacterium tuberculosis
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Jonathan Braverman, Daniel K. Nomura, Daniel I. Benjamin, Kimberly M. Sogi, and Sarah A. Stanley
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0301 basic medicine ,Chemokine ,medicine.medical_treatment ,Immunology ,Blotting, Western ,Enzyme-Linked Immunosorbent Assay ,Polymerase Chain Reaction ,Article ,Proinflammatory cytokine ,Microbiology ,Mycobacterium tuberculosis ,03 medical and health sciences ,Interferon-gamma ,Mice ,0302 clinical medicine ,Immune system ,In vivo ,Tandem Mass Spectrometry ,medicine ,Immunology and Allergy ,Macrophage ,Animals ,Tuberculosis ,Feedback, Physiological ,Mice, Knockout ,biology ,Macrophages ,Macrophage Activation ,biology.organism_classification ,Hypoxia-Inducible Factor 1, alpha Subunit ,Mice, Inbred C57BL ,Disease Models, Animal ,030104 developmental biology ,Cytokine ,Anaerobic glycolysis ,030220 oncology & carcinogenesis ,biology.protein ,Glycolysis ,Chromatography, Liquid - Abstract
The cytokine IFN-γ coordinates macrophage activation and is essential for control of pathogens, including Mycobacterium tuberculosis. However, the mechanisms by which IFN-γ controls M. tuberculosis infection are only partially understood. In this study, we show that the transcription factor hypoxia-inducible factor-1α (HIF-1α) is an essential mediator of IFN-γ–dependent control of M. tuberculosis infection both in vitro and in vivo. M. tuberculosis infection of IFN-γ–activated macrophages results in a synergistic increase in HIF-1α protein levels. This increase in HIF-1α levels is functionally important, as macrophages lacking HIF-1α are defective for IFN-γ–dependent control of infection. RNA-sequencing demonstrates that HIF-1α regulates nearly one-half of all IFN-γ–inducible genes during infection of macrophages. In particular, HIF-1α regulates production of important immune effectors, including inflammatory cytokines and chemokines, eicosanoids, and NO. In addition, we find that during infection HIF-1α coordinates a metabolic shift to aerobic glycolysis in IFN-γ–activated macrophages. We find that this enhanced glycolytic flux is crucial for IFN-γ–dependent control of infection in macrophages. Furthermore, we identify a positive feedback loop between HIF-1α and aerobic glycolysis that amplifies macrophage activation. Finally, we demonstrate that HIF-1α is crucial for control of infection in vivo as mice lacking HIF-1α in the myeloid lineage are strikingly susceptible to infection and exhibit defective production of inflammatory cytokines and microbicidal effectors. In conclusion, we have identified HIF-1α as a novel regulator of IFN-γ–dependent immunity that coordinates an immunometabolic program essential for control of M. tuberculosis infection in vitro and in vivo.
- Published
- 2016
221. Editorial overview: Omics: The maturation of chemical biology
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Daniel K. Nomura, Alan Saghatelian, and Eranthie Weerapana
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Proteomics ,Chemical biology ,Metabolomics ,Computational biology ,Biology ,Biochemistry ,Analytical Chemistry - Abstract
The success of these original studies led to efforts to democratize chemical biology through combinatorial chemistry and high-throughput screening so that small molecule probes of any biological process could be found. The ability to discover small-molecule probes for any biological process allowed researchers to tap into the power of chemical biology to elucidate biological mechanisms without needing a known natural product. These efforts were successful, and numerous small-molecule probes for a variety of biological processes were found in this way. Furthermore, the promise of being able to translate small-molecule probes into a clinical candidate expanded efforts in this area.
- Published
- 2016
222. Electronic properties of the residual donor in unintentionally doped beta-Ga2O3
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Ken Goto, K. Nomura, Bo Monemar, Nguyen Tien Son, S. Yamakoshi, Quang Tu Thieu, Masataka Higashiwaki, Rie Togashi, Erik Janzén, Akito Kuramata, Hisashi Murakami, Yoshinao Kumagai, and Akinori Koukitu
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010302 applied physics ,Annealing (metallurgy) ,Chemistry ,Doping ,General Physics and Astronomy ,Nanotechnology ,02 engineering and technology ,Electronic structure ,Activation energy ,Electron ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Molecular physics ,law.invention ,Delocalized electron ,law ,Impurity ,0103 physical sciences ,0210 nano-technology ,Electron paramagnetic resonance ,Den kondenserade materiens fysik - Abstract
Electron paramagnetic resonance was used to study the donor that is responsible for the n-type conductivity in unintentionally doped (UID) beta-Ga2O3 substrates. We show that in as-grown materials, the donor requires high tempeature annealing to be activated. In partly activated materials with the donor concentration in the 10(16) cm(-3) range or lower, the donor is found to behave as a negative-U center (often called a DX center) with the negative charge state DX- lying similar to 16-20 meV below the neutral charge state d(0) (or E-d), which is estimated to be similar to 28-29 meV below the conduction band minimum. This corresponds to a donor activation energy of E-a similar to 44-49 meV. In fully activated materials with the donor spin density close to similar to 1 x 10(18) cm(-3), donor electrons become delocalized, leading to the formation of impurity bands, which reduces the donor activation energy to E-a similar to 15-17 meV. The results clarify the electronic structure of the dominant donor in UID beta-Ga2O3 and explain the large variation in the previously reported donor activation energy. Published by AIP Publishing. Funding Agencies|Linkoping Linnaeus Initiative for Novel Functional Materials (LiLi-NFM); Council for Science, Technology and Innovation (CSTI); Cross-ministerial Strategic Innovation Promotion Program (SIP); NEDO, Japan
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- 2016
223. Cutting Edge: IL-13Rα1 Expression in Dopaminergic Neurons Contributes to Their Oxidative Stress–Mediated Loss following Chronic Peripheral Treatment with Lipopolysaccharide
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Daniel K. Nomura, Bruno Conti, Indrek Saar, Kwang-Soo Kim, Manuel Sanchez-Alavez, Maria Cecilia Garibaldi Marcondes, Brad E. Morrison, Tamas Bartfai, Pamela Maher, Shuei Sugama, and Alejandro Sanchez-Gonzalez
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Lipopolysaccharides ,Immunology ,Inflammation ,Substantia nigra ,Biology ,medicine.disease_cause ,Article ,Pathogenesis ,Mice ,medicine ,Animals ,Humans ,Immunology and Allergy ,Genetic Predisposition to Disease ,Mice, Knockout ,chemistry.chemical_classification ,Reactive oxygen species ,Cell Death ,Pars compacta ,Dopaminergic Neurons ,Neurodegeneration ,Dopaminergic ,Genetic Diseases, X-Linked ,Parkinson Disease ,medicine.disease ,Interleukin-13 Receptor alpha1 Subunit ,Cell biology ,Mice, Inbred C57BL ,Disease Models, Animal ,Oxidative Stress ,chemistry ,Chronic Disease ,medicine.symptom ,Oxidative stress - Abstract
Inflammation and its mediators, including cytokines and reactive oxigen species, are believed to contribute to neurodegeneration. In the mouse brain, we found that the interleukin 13 receptor alpha 1 chain (IL-13Rα1) was expressed in the dopaminergic (DA) neurons of the substantia nigra pars compacta which are preferentially lost in human Parkinson’s disease (PD). Mice deficient for Il13ra1 exhibited resistance to loss of DA neurons in a model of chronic peripheral inflammation using bacterial lipopolysaccharide. Interleukin-13, as well as interleukin-4, potentiated the cytotoxic effects of t-butyl hydroperoxide and hydrogen peroxide on mouse dopaminergic MN9D cells. Collectively, our data indicate that expression of IL-13Rα1 on DA neurons can increase their susceptibility to oxidative stress-mediated damage thereby contributing to their preferential loss. In humans, Il13ra1 lies on the X chromosome within the PARK12 locus of susceptibility to PD suggesting that IL-13Rα1 may have a role in the pathogenesis of this neurodegenerative disease.
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- 2012
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224. Effect of crystal size on purity of uranyl nitrate hexahydrate crystalline particles grown in nitric acid medium
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M. Nakahara and K. Nomura
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Crystal ,chemistry.chemical_compound ,chemistry ,Nitric acid ,law ,Inorganic chemistry ,Physical and Theoretical Chemistry ,Crystallization ,URANYL NITRATE HEXAHYDRATE ,Transuranium element ,Nuclear chemistry ,law.invention - Abstract
Crystal washing experiments were carried out using a uranyl nitrate solution in order to confirm the effect of uranyl nitrate hexahydrate (UNH) crystalline particle size on the removal of liquid impurities. The UNH crystal was immersed in a Ce solution and was washed for removing the mother liquor on the surface of the UNH crystals. Larger UNH crystals were advantageous for increasing the decontamination factors (DFs) of liquid impurities. The large crystal size reduced the specific surface area of the crystals which in turn decreased the adhesion of liquid impurities on the surface of the crystals. Therefore, high DFs of liquid impurities were achieved before and after washing. In the crystallization experiments, the DFs of metals for the UNH crystal were evaluated using a dissolver solution derived from irradiated fast neutron reactor core fuel. The UNH crystal size did not affect the decontamination of solid impurities such as Ba and Np even after crystal washing in the U crystallization experiments.
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- 2012
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225. A Dysregulated Endocannabinoid-Eicosanoid Network Supports Pathogenesis in a Mouse Model of Alzheimer's Disease
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Kathleen M. Wood, Cathleen Gonzales, James M. Duerr, Joel W. Schwartz, Justin R. Piro, Daniel K. Nomura, Tarek A. Samad, Daniel I. Benjamin, and YeQing Pi
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Plaque, Amyloid ,Inflammation ,Disease ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Pathogenesis ,Mice ,chemistry.chemical_compound ,Alzheimer Disease ,Presenilin-1 ,medicine ,Animals ,Humans ,Metabolomics ,Gliosis ,lcsh:QH301-705.5 ,Neuroinflammation ,Amyloid beta-Peptides ,Brain ,Endocannabinoid system ,Monoacylglycerol Lipases ,Enzyme Activation ,Monoacylglycerol lipase ,Disease Models, Animal ,Solubility ,Biochemistry ,chemistry ,Eicosanoid ,lcsh:Biology (General) ,Eicosanoids ,Arachidonic acid ,medicine.symptom ,Neuroscience ,Gene Deletion ,Endocannabinoids - Abstract
Although inflammation in the brain is meant as a defense mechanism against neurotoxic stimuli, increasing evidence suggests that uncontrolled, chronic and persistent inflammation contributes to neurodegeneration. Most neurodegenerative diseases have now been associated with chronic inflammation, including Alzheimer’s disease (AD). Whether anti-inflammatory approaches can be used to treat AD, however, is a major unanswered question. We recently demonstrated that monoacylglycerol lipase (MAGL) hydrolyzes endocannabinoids to generate the primary arachidonic acid pool for neuroinflammatory prostaglandins. In this study, we show that genetic inactivation of MAGL attenuates neuroinflammation and lowers amyloid βlevels and plaques, in an AD mouse model. We also find that pharmacological blockade of MAGL recapitulates the cytokine lowering effects through reduced prostaglandin production, rather than enhanced endocannabinoid signaling. Our findings thus reveal a heretofore unrecognized role of MAGL in modulating neuroinflammation and amyloidosis in AD etiology, and put forth MAGL inhibitors as a potential next-generation strategy for combatting AD.
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- 2012
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226. Clinical features of ocular myasthenia gravis in japan
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Hidenori Matsuo, Jun Shimizu, Naoki Kawaguchi, S. Izaki, Jun Ichi Kira, Masaaki Niino, T. Narita, Hiroaki Yoshikawa, Hiroyuki Murai, Kazuo Iwasa, Masahiro Sonoo, Yuki Hatanaka, N. Minami, K. Nomura, Y. Nomura, and Yuko Shimizu
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medicine.medical_specialty ,Neurology ,business.industry ,Ocular myasthenia ,Medicine ,Neurology (clinical) ,business ,medicine.disease ,Dermatology - Published
- 2017
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227. The efficacy of bofu-tsusho-san for obesity in myotonic dystrophy type 1 patients
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K. Yoshida, Yasuhiro Suzuki, Kenji Kuroda, K. Nomura, Y. Aburakawa, H. Kishi, K. Sakashita, and Takashi Kimura
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medicine.medical_specialty ,Neurology ,business.industry ,Internal medicine ,Medicine ,Neurology (clinical) ,business ,medicine.disease ,Myotonic dystrophy ,Obesity - Published
- 2017
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228. Organic-Inorganic Hybrids for Bioinert Coating on Implantable Electronic Devices
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Koichi Kikuta, Takashi Tokuda, Chikara Ohtsuki, Jun Ohta, Ill Yong Kim, and K. Nomura
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Materials science ,Silicon ,Mechanical Engineering ,Diphenylsilanediol ,chemistry.chemical_element ,Epoxy ,engineering.material ,chemistry.chemical_compound ,chemistry ,Resist ,Coating ,Mechanics of Materials ,visual_art ,engineering ,visual_art.visual_art_medium ,General Materials Science ,Chemical stability ,Composite material ,Hybrid material ,Curing (chemistry) - Abstract
For the purpose of bioinert coating on electronic devices, we developed the non-hydrolytic sol-gel derived organic-inorganic hybrid materials by addition of epoxy groups which can adhere strongly to the surface of electronic silicon device. The adhesion and chemical properties of hybrids were investigated as a function of epoxy group contents. The hybrids were prepared from 3-metacrloxypropyltrimethoxysilane (MPTS) and 3-glycidoxypropyltrimethoxysilane (GPTS) and diphenylsilanediol. The transparent hybrids were obtained after curing by UV irradiation. The adhesion properties of the hybrids were estimated by the maximum load to resist in a scratch test. The adhesion property of the hybrids increased with addition of GPTS and the highest adhesion was obtained from the hybrid with 5-10 mol% of GPTS. From the element analysis, Si concentrations of all the solutions were less than 2 mM after soaking for 7 d. The Si concentrations were not changed with increasing soaking period. The addition of epoxy groups is effective on improvement of adhesion property of the silica-based hybrid without loosening its chemical stability.
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- 2011
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229. Blockade of Endocannabinoid Hydrolytic Enzymes Attenuates Precipitated Opioid Withdrawal Symptoms in Mice
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Rehab A. Abdullah, Gracious R. Ross, Aron H. Lichtman, Benjamin F. Cravatt, Robert A. Owens, Hamid I. Akbarali, Joel E. Schlosburg, Steven G. Kinsey, Daniel K. Nomura, Jonathan Z. Long, Divya Ramesh, and Laura J. Sim-Selley
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Diarrhea ,Male ,Cannabinoid receptor ,Pyridines ,Narcotic Antagonists ,(+)-Naloxone ,Pharmacology ,Amidohydrolases ,Receptor, Cannabinoid, CB2 ,Mice ,chemistry.chemical_compound ,Piperidines ,Receptor, Cannabinoid, CB1 ,Ileum ,Fatty acid amide hydrolase ,Cannabinoid Receptor Modulators ,Weight Loss ,medicine ,Animals ,Benzodioxoles ,Dronabinol ,JZL184 ,Brain Chemistry ,Mice, Knockout ,Mice, Inbred ICR ,Arachidonic Acid ,Behavior, Animal ,Naloxone ,Kindling ,Hydrolysis ,Anandamide ,Endocannabinoid system ,Electric Stimulation ,Monoacylglycerol Lipases ,Substance Withdrawal Syndrome ,Mice, Inbred C57BL ,chemistry ,Opioid ,Behavioral Pharmacology ,Prostaglandins ,Molecular Medicine ,lipids (amino acids, peptides, and proteins) ,Morphine Dependence ,Endocannabinoids ,Muscle Contraction ,medicine.drug - Abstract
Δ(9)-Tetrahydrocannbinol (THC), the primary active constituent of Cannabis sativa, has long been known to reduce opioid withdrawal symptoms. Although THC produces most of its pharmacological actions through the activation of CB(1) and CB(2) cannabinoid receptors, the role these receptors play in reducing the variety of opioid withdrawal symptoms remains unknown. The endogenous cannabinoids, N-arachidonoylethanolamine (anandamide; AEA) and 2-arachidonylglycerol (2-AG), activate both cannabinoid receptors but are rapidly metabolized by fatty acid amide hydrolase (FAAH) and monoacylglycerol lipase (MAGL), respectively. The objective of this study was to test whether increasing AEA or 2-AG, via inhibition of their respective hydrolytic enzymes, reduces naloxone-precipitated morphine withdrawal symptoms in in vivo and in vitro models of opioid dependence. Morphine-dependent mice challenged with naloxone reliably displayed a profound withdrawal syndrome, consisting of jumping, paw tremors, diarrhea, and weight loss. THC and the MAGL inhibitor 4-nitrophenyl 4-(dibenzo[d][1,3]dioxol-5-yl(hydroxy)methyl)piperidine-1-carboxylate (JZL184) dose dependently reduced the intensity of most measures through the activation of CB(1) receptors. JZL184 also attenuated spontaneous withdrawal signs in morphine-dependent mice. The FAAH inhibitor N-(pyridin-3-yl)-4-(3-(5-(trifluoromethyl)pyridin-2-yloxy)benzyl)-piperdine-1-carboxamide (PF-3845) reduced the intensity of naloxone-precipitated jumps and paw flutters through the activation of CB(1) receptors but did not ameliorate incidence of diarrhea or weight loss. In the final series of experiments, we investigated whether JZL184 or PF-3845 would attenuate naloxone-precipitated contractions in morphine-dependent ilea. Both enzyme inhibitors attenuated the intensity of naloxone-induced contractions, although this model does not account mechanistically for the autonomic withdrawal responses (i.e., diarrhea) observed in vivo. These results indicate that endocannabinoid catabolic enzymes are promising targets to treat opioid dependence.
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- 2011
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230. Emperipolesis-like Invasion of Neoplastic Lymphocytes into Hepatocytes in Feline T-cell Lymphoma
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N. Ano, Y. Kagawa, Y. Kanae, Isao Narama, K. Nomura, Kiyokazu Ozaki, and M. Suzuki
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Male ,Pathology ,medicine.medical_specialty ,CD3 ,Cell ,Cat Diseases ,Lymphoma, T-Cell ,Cell Physiological Phenomena ,Pathology and Forensic Medicine ,Cell Fusion ,Microscopy, Electron, Transmission ,medicine ,Animals ,T-cell lymphoma ,Cytotoxic T cell ,Neoplasm Invasiveness ,Lymphocytes ,General Veterinary ,biology ,medicine.disease ,Lymphoma ,Emperipolesis ,medicine.anatomical_structure ,Liver ,Cytoplasm ,Cats ,Hepatocytes ,biology.protein ,Immunohistochemistry ,Female - Abstract
Twelve cases of feline malignant lymphoma with emperipolesis-like invasion of neoplastic lymphocytes were examined microscopically, immunohistochemically and ultrastructurally. Intracytoplasmic invasion of neoplastic cells varied in severity between the cases, between hepatic lobules and between areas within the lobules. The number of infiltrating neoplastic cells ranged from one to several per hepatocyte. Neoplastic cells exhibited widely varying morphology from case-to-case and cell-to-cell within each case, and contained eosinophilic cytoplasmic granules in four cases. Immunohistochemical examination revealed that neoplastic cells in 11 of the 12 cases expressed one or both T-cell markers (CD3 and TIA-1). Diagnosis of T-cell lymphoma was also confirmed by assessment of clonality by polymerase chain reaction. Ultrastructural analysis revealed that the neoplastic lymphocytes were contained within an invagination of the cell membrane of the hepatocyte, rather than directly infiltrating into the cytoplasm of the cell. There was no evidence that the invasive neoplastic lymphocytes had a cytotoxic effect.
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- 2011
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231. Design, synthesis, and biological evaluation of a biyouyanagin compound library
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Ann J. Hessell, Dennis R. Burton, Benjamin F. Cravatt, Gang Lu, Juan Carlos de la Torre, Silvano Sanchini, David Sarlah, T. Robert Wu, Daniel K. Nomura, Beatrice Cubitt, and Kyriacos C. Nicolaou
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Multidisciplinary ,Molecular Structure ,Anti-HIV Agents ,Chemistry ,Drug discovery ,HIV ,Total synthesis ,HIV Infections ,Arenavirus ,Chemical synthesis ,Combinatorial chemistry ,Cell Line ,Drug development ,Design synthesis ,Biological property ,Arenaviridae Infections ,Humans ,Molecule ,Spiro Compounds ,Organic Synthesis Toward Small-Molecule Probes and Drugs Special Feature ,Sesquiterpenes ,Biological evaluation - Abstract
Modern drug discovery efforts rely, to a large extent, on lead compounds from two classes of small organic molecules; namely, natural products (i.e., secondary metabolites) and designed compounds (i.e., synthetic molecules). In this article, we demonstrate how these two domains of lead compounds can be merged through total synthesis and molecular design of analogs patterned after the targeted natural products, whose promising biological properties provide the motivation. Specifically, the present study targeted the naturally occurring biyouyanagins A and B and their analogs through modular chemical synthesis and led to the discovery of small organic molecules possessing anti-HIV and anti-arenavirus properties.
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- 2011
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232. Hepatoblastoma in a Cat
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Kiyokazu Ozaki, N. Ano, K. Nomura, and Isao Narama
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Hepatoblastoma ,Pathology ,medicine.medical_specialty ,General Veterinary ,biology ,medicine.diagnostic_test ,Biopsy ,Liver Neoplasms ,Chromogranin A ,Vimentin ,Cat Diseases ,medicine.disease ,Immunohistochemistry ,Cytokeratin ,Fatal Outcome ,Cats ,biology.protein ,medicine ,Synaptophysin ,Animals ,Female ,Neural cell adhesion molecule ,Stem cell - Abstract
Hepatoblastomas are neoplasms that originate from putative pluripotential stem cells of the liver. A hepatic mass from an 8-year-old Abyssinian cat was composed of cords and sheets of neoplastic cells, with scattered rosettes and small ductal structures. Most neoplastic cells had a pale eosinophilic cytoplasm and a round to ovoid nucleus. The tumor also had short spindle cells with an oval nucleus. Immunohistochemically, neoplastic cells were weakly positive for embryonic hepatocellular markers, such as alpha-fetoprotein and cytokeratin (CK) 8/18, but negative for the hepatocellular marker Hepatocyte Paraffin 1. The cells were also positive for CD56/neural cell adhesion molecule and for the biliary epithelial markers CK 7, CK 8/18, CK CAM5.2, and vimentin, but negative for CK 20. Some neoplastic cells expressed neuroectodermal or neuroendocrine markers, such as protein gene product 9.5 and synaptophysin, but were negative for chromogranin A and not argyrophilic by the Grimelius technique. The cat died soon after the biopsy without clinical improvement.
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- 2010
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233. The UPR Activator ATF6 Responds to Proteotoxic and Lipotoxic Stress by Distinct Mechanisms
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Douglass J. Forbes, Maho Niwa, Daniel K. Nomura, Lindsay S. Roberts, Arvin B. Tam, Io Guane Rivera, and Vivek Chandra
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0301 basic medicine ,endocrine system ,Fenretinide ,Transcription, Genetic ,Protein Serine-Threonine Kinases ,Biology ,Endoplasmic Reticulum ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,03 medical and health sciences ,chemistry.chemical_compound ,Sphingosine ,Humans ,Molecular Biology ,Activator (genetics) ,ATF6 ,Endoplasmic reticulum ,Cell Biology ,Endoplasmic Reticulum Stress ,Sphingolipid ,Transmembrane protein ,Activating Transcription Factor 6 ,Cell biology ,Transmembrane domain ,030104 developmental biology ,chemistry ,Unfolded Protein Response ,Unfolded protein response ,Developmental Biology - Abstract
The unfolded protein response (UPR) is induced by proteotoxic stress of the endoplasmic reticulum (ER). Here we report that ATF6, a major mammalian UPR sensor, is also activated by specific sphingolipids, dihydrosphingosine (DHS) and dihydroceramide (DHC). Single mutations in a previously undefined transmembrane domain motif that we identify in ATF6 incapacitate DHS/DHC activation while still allowing proteotoxic stress activation via the luminal domain. ATF6 thus possesses two activation mechanisms: DHS/DHC activation and proteotoxic stress activation. Reporters constructed to monitor each mechanism show that phenobarbital-induced ER membrane expansion depends on transmembrane domain-induced ATF6. DHS/DHC addition preferentially induces transcription of ATF6 target lipid biosynthetic and metabolic genes over target ER chaperone genes. Importantly, ATF6 containing a luminal achromatopsia eye disease mutation, unresponsive to proteotoxic stress, can be activated by fenretinide, a drug that upregulates DHC, suggesting a potential therapy for this and other ATF6-related diseases including heart disease and stroke.
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- 2018
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234. Chronic monoacylglycerol lipase blockade causes functional antagonism of the endocannabinoid system
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Dana E. Selley, Bin Pan, Aron H. Lichtman, Elizabeth A. Thomas, Qing-song Liu, Daniel K. Nomura, Benjamin F. Cravatt, Steven G. Kinsey, Jacqueline L. Blankman, Peter T. Nguyen, Divya Ramesh, Joel E. Schlosburg, Lamont Booker, Laura J. Sim-Selley, Jonathan Z. Long, and James J. Burston
- Subjects
Male ,Cannabinoid receptor ,medicine.medical_treatment ,2-Arachidonoylglycerol ,Pain ,Mice, Transgenic ,Pharmacology ,Article ,Amidohydrolases ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Piperidines ,Receptor, Cannabinoid, CB1 ,Cannabinoid Receptor Modulators ,medicine ,Animals ,Benzodioxoles ,Enzyme Inhibitors ,JZL184 ,030304 developmental biology ,Mice, Knockout ,Analgesics ,0303 health sciences ,Neuronal Plasticity ,musculoskeletal, neural, and ocular physiology ,General Neuroscience ,Brain ,Anandamide ,ABHD6 ,Endocannabinoid system ,Monoacylglycerol Lipases ,3. Good health ,Mice, Inbred C57BL ,Monoacylglycerol lipase ,nervous system ,chemistry ,Models, Animal ,Synapses ,Female ,lipids (amino acids, peptides, and proteins) ,Cannabinoid ,psychological phenomena and processes ,030217 neurology & neurosurgery ,Endocannabinoids - Abstract
Prolonged exposure to drugs of abuse, such as cannabinoids and opioids, leads to pharmacological tolerance and receptor desensitization in the nervous system. Here we show that a similar form of functional antagonism is produced by sustained inactivation of monoacylglycerol lipase (MAGL), the principal degradative enzyme for the endocannabinoid 2-arachidonoylglycerol (2-AG). After repeated administration, the MAGL inhibitor JZL184 lost its analgesic activity and produced cross-tolerance to cannabinoid receptor (CB1) agonists in mice, effects that were phenocopied by genetic disruption of MAGL. Chronic MAGL blockade also caused physical dependence, impaired endocannabinoid-dependent synaptic plasticity, and desensitization of brain CB1 receptors. These data contrasted with blockade of fatty acid amide hydrolase (FAAH), an enzyme that degrades the other major endocannabinoid anandamide, which produced sustained analgesia without impairing CB1 receptors. Thus, individual endocannabinoids generate distinct analgesic profiles that are either sustained or transitory and associated with agonism and functional antagonism of the brain cannabinoid system, respectively.
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- 2010
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235. The Glycerophospho Metabolome and Its Influence on Amino Acid Homeostasis Revealed by Brain Metabolomics of GDE1(−/−) Mice
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Toru Komatsu, Benjamin F. Cravatt, Gary Siuzdak, Florian Kopp, Jason R. Thomas, Gabriel M. Simon, Sunia A. Trauger, and Daniel K. Nomura
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Male ,Inositol Phosphates ,Clinical Biochemistry ,Biology ,Biochemistry ,Mass Spectrometry ,Article ,Serine ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Metabolomics ,Amino acid homeostasis ,In vivo ,Drug Discovery ,Metabolome ,Animals ,Homeostasis ,Amino Acids ,Molecular Biology ,030304 developmental biology ,Pharmacology ,chemistry.chemical_classification ,0303 health sciences ,SYSBIO ,Phosphoric Diester Hydrolases ,Brain ,Water ,General Medicine ,In vitro ,Amino acid ,CHEMBIO ,Solubility ,chemistry ,Molecular Medicine ,SYSNEURO ,030217 neurology & neurosurgery - Abstract
SummaryGDE1 is a mammalian glycerophosphodiesterase (GDE) implicated by in vitro studies in the regulation of glycerophophoinositol (GroPIns) and possibly other glycerophospho (GroP) metabolites. Here, we show using untargeted metabolomics that GroPIns is profoundly (>20-fold) elevated in brain tissue from GDE1(−/−) mice. Furthermore, two additional GroP metabolites not previously identified in eukaryotic cells, glycerophosphoserine (GroPSer) and glycerophosphoglycerate (GroPGate), were also highly elevated in GDE1(−/−) brains. Enzyme assays with synthetic GroP metabolites confirmed that GroPSer and GroPGate are direct substrates of GDE1. Interestingly, our metabolomic profiles also revealed that serine (both L-and D-) levels were significantly reduced in brains of GDE1(−/−) mice. These findings designate GroPSer as a previously unappreciated reservoir for free serine in the nervous system and suggest that GDE1, through recycling serine from GroPSer, may impact D-serine-dependent neural signaling processes in vivo.PaperClip
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- 2010
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236. Abstract 5497: Effective combination therapy for breast cancer targeting BACH1 and mitochondrial metabolism
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Jielin Yan, Jiyoung Lee, Daniel C. Rabe, Peter C. Hart, Felicia D. Rustandy, Jason W. Locasale, Mohamad Elbaz, Marcelo G. Bonini, Elizabeth A. Grossman, Marsha Rich Rosner, Christie Kang, Daniel K. Nomura, Casey Frankenberger, and Ali Ekrem Yesilkanal
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Cancer Research ,Combination therapy ,business.industry ,Cancer ,medicine.disease ,Small hairpin RNA ,Breast cancer ,Oncology ,Gene expression ,Transcriptional regulation ,medicine ,Cancer research ,business ,Transcription factor ,Triple-negative breast cancer - Abstract
Oxidative phosphorylation is an attractive target for cancer therapy. Reprogramming metabolic pathways by promoting oxidative phosphorylation could improve the ability of metabolic inhibitors to suppress cancers with limited treatment options like triple negative breast cancer (TNBC). Here we show that BACH1, a heme-binding transcription factor whose expression is enriched in patients with TNBC, inhibits oxidative phosphorylation through direct transcriptional regulation of electron transport chain (ETC) gene expression. Treatment of cells with hemin, which induces BACH1 degradation, mimics BACH1 depletion with shRNA. Pretreatment of TNBC tumors with BACH1 shRNA or hemin overcame resistance to metformin, an anti-diabetic drug, and abolished the growth of both cell line and patient-derived tumor xenografts. BACH1 gene expression inversely correlated with ETC gene expression in breast cancer patients as well as other tumor types, highlighting the clinical relevance. This study demonstrates that oxidative phosphorylation represents an Achilles heel that can be exploited through targeting BACH1 to sensitize breast cancer and potentially other tumor tissues to mitochondrial inhibitors. Citation Format: Jiyoung Lee, Ali Yesilkanal, Casey Frankenberger, Mohamad Elbaz, Daniel Rabe, Jielin Yan, Felicia Rustandy, Peter Hart, Christie Kang, Elizabeth Grossman, Jason Locasale, Daniel Nomura, Marcelo Bonini, Marsha Rosner. Effective combination therapy for breast cancer targeting BACH1 and mitochondrial metabolism [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 5497.
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- 2018
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237. J-PARC MLFの低温水素システム用ヘリウム冷凍機性能の回復
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H Takada, H Muto, M Teshigawara, K Aoyagi, S Hasegawa, T Aso, and K Nomura
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History ,Materials science ,Freon ,Nuclear engineering ,Refrigerator car ,chemistry.chemical_element ,Helium-3 refrigerator ,Computer Science Applications ,Education ,chemistry ,Heat exchanger ,Gas compressor ,Liquid hydrogen ,Spallation Neutron Source ,Helium - Abstract
At J-PARC's pulsed spallation neutron source, a cryogenic hydrogen system has been operated to provide liquid para-hydrogen (20K and 1.5 MPa) to the moderators since 2008. Typical operating period of the cryogenic hydrogen system was approximately 3 months continuously. However, the pressure differences between No.1, No.2 heat exchangers (HXs) and an adsorber (ADS) in the helium refrigerator had begun to increase rapidly since the beginning of 2015, the refrigerator could not be operated continuously. The impurity in the refrigerator was measured by newly introduced quadrat mass spectrometer, but no significant impurities was observed. We suspected the oil contamination from the helium compressor, as it caused performance degradation of the cryogenic system in other facilities, such as RIKEN, CERN, etc. In the summer outage in 2016, we cleaned the HXs with Freon to remove the oil contamination, and replaced the activate charcoals of ADS and oil separator (OS-5). As a result, the performance of the helium refrigerator was recovered completely.
- Published
- 2018
238. Monoacylglycerol Lipase Regulates a Fatty Acid Network that Promotes Cancer Pathogenesis
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Benjamin F. Cravatt, Sherry Niessen, Jonathan Z. Long, Shu-Wing Ng, Heather Hoover, and Daniel K. Nomura
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Transplantation, Heterologous ,HUMDISEASE ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Mice ,Neoplasms ,Tumor Cells, Cultured ,Animals ,Humans ,Ovarian Neoplasms ,chemistry.chemical_classification ,Biochemistry, Genetics and Molecular Biology(all) ,Fatty Acids ,Fatty acid ,Metabolism ,Lipid Metabolism ,Phenotype ,Monoacylglycerol Lipases ,Monoacylglycerol lipase ,Transplantation ,Enzyme ,chemistry ,Biochemistry ,SIGNALING ,Cell culture ,Cancer cell ,Cancer research ,Monoglycerides ,Female ,Neoplasm Transplantation - Abstract
Tumor cells display progressive changes in metabolism that correlate with malignancy, including development of a lipogenic phenotype. How stored fats are liberated and remodeled to support cancer pathogenesis, however, remains unknown. Here, we show that the enzyme monoacylglycerol lipase (MAGL) is highly expressed in aggressive human cancer cells and primary tumors, where it regulates a fatty acid network enriched in oncogenic signaling lipids that promotes migration, invasion, survival, and in vivo tumor growth. Overexpression of MAGL in non-aggressive cancer cells recapitulates this fatty acid network and increases their pathogenicity -- phenotypes that are reversed by an MAGL inhibitor. Interestingly, impairments in MAGL-dependent tumor growth are rescued by a high-fat diet, indicating that exogenous sources of fatty acids can contribute to malignancy in cancers lacking MAGL activity. Together, these findings reveal how cancer cells can co-opt a lipolytic enzyme to translate their lipogenic state into an array of pro-tumorigenic signals.
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- 2010
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239. Dual blockade of FAAH and MAGL identifies behavioral processes regulated by endocannabinoid crosstalk in vivo
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Laura J. Sim-Selley, Benjamin F. Cravatt, Aron H. Lichtman, Xin Jin, Lamont Booker, Jenny L. Wiley, Jonathan Z. Long, Robert E. Vann, Daniel K. Nomura, D. Matthew Walentiny, and James J. Burston
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Cannabinoid receptor ,Cannabinoid Receptor Modulators ,Polyunsaturated Alkamides ,Arachidonic Acids ,Motor Activity ,Pharmacology ,Piperazines ,Amidohydrolases ,Glycerides ,Mice ,chemistry.chemical_compound ,Piperidines ,Fatty acid amide hydrolase ,Animals ,JZL184 ,Pain Measurement ,Multidisciplinary ,Molecular Structure ,Anandamide ,Biological Sciences ,Endocannabinoid system ,Monoacylglycerol Lipases ,Monoacylglycerol lipase ,nervous system ,chemistry ,lipids (amino acids, peptides, and proteins) ,Carbamates ,Carboxylic Ester Hydrolases ,psychological phenomena and processes ,JZL195 ,Endocannabinoids - Abstract
Δ 9 -Tetrahydrocannabinol (THC), the psychoactive component of marijuana, and other direct cannabinoid receptor (CB1) agonists produce a number of neurobehavioral effects in mammals that range from the beneficial (analgesia) to the untoward (abuse potential). Why, however, this full spectrum of activities is not observed upon pharmacological inhibition or genetic deletion of either fatty acid amide hydrolase (FAAH) or monoacylglycerol lipase (MAGL), enzymes that regulate the two major endocannabinoids anandamide (AEA) and 2-arachidonoylglycerol (2-AG), respectively, has remained unclear. Here, we describe a selective and efficacious dual FAAH/MAGL inhibitor, JZL195, and show that this agent exhibits broad activity in the tetrad test for CB1 agonism, causing analgesia, hypomotilty, and catalepsy. Comparison of JZL195 to specific FAAH and MAGL inhibitors identified behavioral processes that were regulated by a single endocannabinoid pathway (e.g., hypomotility by the 2-AG/MAGL pathway) and, interestingly, those where disruption of both FAAH and MAGL produced additive effects that were reversed by a CB1 antagonist. Falling into this latter category was drug discrimination behavior, where dual FAAH/MAGL blockade, but not disruption of either FAAH or MAGL alone, produced THC-like responses that were reversed by a CB1 antagonist. These data indicate that AEA and 2-AG signaling pathways interact to regulate specific behavioral processes in vivo, including those relevant to drug abuse, thus providing a potential mechanistic basis for the distinct pharmacological profiles of direct CB1 agonists and inhibitors of individual endocannabinoid degradative enzymes.
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- 2009
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240. Characterization of Monoacylglycerol Lipase Inhibition Reveals Differences in Central and Peripheral Endocannabinoid Metabolism
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Daniel K. Nomura, Jonathan Z. Long, and Benjamin F. Cravatt
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Glyceride ,Clinical Biochemistry ,Arachidonic Acids ,Biology ,Degradative enzyme ,Biochemistry ,Article ,MOLNEURO ,Glycerides ,Serine ,Mice ,chemistry.chemical_compound ,Piperidines ,Cannabinoid Receptor Modulators ,Drug Discovery ,Animals ,Benzodioxoles ,Enzyme Inhibitors ,Molecular Biology ,JZL184 ,chemistry.chemical_classification ,Pharmacology ,Brain ,General Medicine ,ABHD6 ,Endocannabinoid system ,Monoacylglycerol Lipases ,Monoacylglycerol lipase ,CHEMBIO ,Enzyme ,chemistry ,biology.protein ,Monoglycerides ,Molecular Medicine ,CELLBIO ,Metabolic Networks and Pathways ,Endocannabinoids - Abstract
SUMMARY Monoacylglycerol lipase (MAGL) is a principal degradative enzyme for the endocannabinoid 2-arachidonoylglycerol (2-AG). We recently reported a piperidine carbamate, JZL184, that inhibits MAGL with high potency and selectivity. Here, we describe a comprehensive mechanistic characterization of JZL184. We provide evidence that JZL184 irreversibly inhibits MAGL via carbamoylation of the enzyme’s serine nucleophile. Functional proteomic analysis of mice treated with JZL184 revealed that this inhibitor maintains good selectivity for MAGL across a wide range of central and peripheral tissues. Interestingly, MAGL blockade produced marked, tissue-specific differences in monoglyceride metabolism, with brain showing the most dramatic elevations in 2-AG and peripheral tissues often showing greater changes in other monoglycerides. Collectively, these studies indicate that MAGL exerts tissue-dependent control over endocannabinoid and monoglyceride metabolism and designate JZL184 as a selective tool to characterize the functions of MAGL in vivo.
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- 2009
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241. The KanNon System - phonemic recognition using Burg-MCE
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K. Fujimoto, K. Nomura, S. Sugimoto, and Y. Ri
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Materials Science (miscellaneous) - Published
- 2009
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242. POLLEN TUBE GROWTH AND SEED PRODUCTION IN SELF AND CROSS POLLINATION IN TELOPEA SPECIOSISSIMA
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G.A. Reynoso-Castillo, M. Goi, S. Fukai, A. Hasegawa, and K. Nomura
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Telopea speciosissima ,Pollination ,biology ,Botany ,Pollen tube ,Horticulture ,biology.organism_classification - Published
- 2008
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243. Organophosphate-sensitive lipases modulate brain lysophospholipids, ether lipids and endocannabinoids
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John E. Casida, Daniel K. Nomura, Sarah C. Vose, and Kazutoshi Fujioka
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biology ,Brain ,Phospholipid Ethers ,Hormone-sensitive lipase ,Lipid metabolism ,Lipase ,General Medicine ,Neuropathy target esterase ,Toxicology ,Acetylcholinesterase ,IDFP ,Organophosphates ,Article ,Monoacylglycerol lipase ,chemistry.chemical_compound ,chemistry ,Biochemistry ,Fatty acid amide hydrolase ,Cannabinoid Receptor Modulators ,biology.protein ,Animals ,Humans ,Lysophospholipids ,Endocannabinoids - Abstract
Lipases play key roles in nearly all cells and organisms. Potent and selective inhibitors help to elucidate their physiological functions and associated metabolic pathways. Organophosphorus (OP) compounds are best known for their anticholinesterase properties but selectivity for lipases and other targets can also be achieved through structural optimization. This review considers several lipid systems in brain modulated by highly OP-sensitive lipases. Neuropathy target esterase (NTE) hydrolyzes lysophosphatidylcholine (lysoPC) as a preferred substrate. Gene deletion of NTE in mice is embryo lethal and the heterozygotes are hyperactive. NTE is very sensitive in vitro and in vivo to direct-acting OP delayed neurotoxicants and the related NTE-related esterase (NTE-R) is also inhibited in vivo. KIAA1363 hydrolyzes acetyl monoalkylglycerol ether (AcMAGE) of the platelet-activating factor (PAF) de novo biosynthetic pathway and is a marker of cancer cell invasiveness. It is also a detoxifying enzyme that hydrolyzes chlorpyrifos oxon (CPO) and some other potent insecticide metabolites. Monoacylglycerol lipase and fatty acid amide hydrolase regulate endocannabinoid levels with roles in motility, pain and memory. Inhibition of these enzymes in mice by OPs, such as isopropyl dodecylfluorophosphonate (IDFP), leads to dramatic elevation of brain endocannabinoids and distinct cannabinoid-dependent behavior. Hormone-sensitive lipase that hydrolyzes cholesteryl esters and diacylglycerols is a newly recognized in vivo CPO- and IDFP-target in brain. The OP chemotype can therefore be used in proteomic and metabolomic studies to further elucidate the biological function and toxicological significance of lipases in lipid metabolism. Only the first steps have been taken to achieve appropriate selective action for OP therapeutic agents.
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- 2008
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244. Field emission spectra of single-atom tips with thermodynamically stable structures
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T. Itagaki, Chuhei Oshima, Hong Shi Kuo, T. T. Tsong, K. Nomura, Tsuyoshi Ishikawa, Eiji Rokuta, Ing-Shouh Hwang, and B. L. Cho
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Chemistry ,Surfaces and Interfaces ,Electron ,Condensed Matter Physics ,Spectral line ,Surfaces, Coatings and Films ,Field electron emission ,Tunnel effect ,Electric field ,Atom ,Materials Chemistry ,Emission spectrum ,Atomic physics ,Quantum tunnelling - Abstract
Energy spectra of field emitted electrons from well-characterized tungsten nanoemitters covered with different metals have been measured in detail while changing the electric field and the topmost atomic structure. At very high electric fields, additional humps appear in the spectra of a single-atom tip. Their energy positions depend on both the coated material and structure termination but not on the electric field. On the other hand, their intensities increase with increasing field. The current spectra did not include either peculiar features attributable to resonant tunneling or electric-field penetration, or significantly narrow FWHM, but are rather analogous to those of the conventional metallic field emitters. The spectral features along with a recent ab-initio theory indicate a large reduction in the tunneling barrier height in front of the single-atom electron source.
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- 2008
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245. Thermal decomposition analysis of organic peroxides using model-free simulation
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Atsumi Miyake, M. Sumino, Y. Mizuta, and K. Nomura
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Organic peroxide ,Chemistry ,Inorganic chemistry ,Thermal decomposition ,Analytical chemistry ,Condensed Matter Physics ,Decomposition ,Isothermal process ,Calorimeter ,chemistry.chemical_compound ,Cumene hydroperoxide ,Physical and Theoretical Chemistry ,Thermal analysis ,Pyrolysis - Abstract
To understand better the thermal decomposition characteristics of organic peroxides, a C80 heat flux calorimeter was used and the decomposition pattern of cumene hydroperoxide and di-tert-butylperoxide were classified as auto-catalytic and nth order reaction, respectively. Based on the scanning results with the C80 at several differing rates of heating, the thermal decomposition behavior of organic peroxides under isothermal storage at lower temperature was simulated with a model-free simulation. Simulated results showed that the calculated conversion of cumene hydroperoxide as a function of time was in good agreement with experimental data obtained with the TAM-III high sensitivity thermal activity monitor.
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- 2008
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246. Activation of the endocannabinoid system by organophosphorus nerve agents
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John E. Casida, Daniel K. Nomura, Benjamin F. Cravatt, Kazutoshi Fujioka, Gabriel M. Simon, Anna M. Ward, Roger S. Issa, and Jacqueline L. Blankman
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Male ,Polyunsaturated Alkamides ,medicine.drug_class ,medicine.medical_treatment ,Molecular Conformation ,Arachidonic Acids ,Pharmacology ,Biology ,Anxiolytic ,Article ,Amidohydrolases ,Glycerides ,Mice ,chemistry.chemical_compound ,Organophosphorus Compounds ,Receptor, Cannabinoid, CB1 ,Fatty acid amide hydrolase ,mental disorders ,Cannabinoid Receptor Modulators ,medicine ,Animals ,Receptors, Cannabinoid ,Molecular Biology ,Mice, Knockout ,Arachidonic Acid ,musculoskeletal, neural, and ocular physiology ,Brain ,Stereoisomerism ,Cell Biology ,Anandamide ,Endocannabinoid system ,Monoacylglycerol Lipases ,Mice, Inbred C57BL ,Monoacylglycerol lipase ,nervous system ,Eicosanoid ,chemistry ,Female ,lipids (amino acids, peptides, and proteins) ,Arachidonic acid ,Cannabinoid ,psychological phenomena and processes ,Endocannabinoids ,Signal Transduction - Abstract
Delta(9)-tetrahydrocannabinol (THC), the psychoactive ingredient of marijuana, has useful medicinal properties but also undesirable side effects. The brain receptor for THC, CB(1), is also activated by the endogenous cannabinoids anandamide and 2-arachidonylglycerol (2-AG). Augmentation of endocannabinoid signaling by blockade of their metabolism may offer a more selective pharmacological approach compared with CB(1) agonists. Consistent with this premise, inhibitors of the anandamide-degrading enzyme fatty acid amide hydrolase (FAAH) produce analgesic and anxiolytic effects without cognitive defects. In contrast, we show that dual blockade of the endocannabinoid-degrading enzymes monoacylglycerol lipase (MAGL) and FAAH by selected organophosphorus agents leads to greater than ten-fold elevations in brain levels of both 2-AG and anandamide and to robust CB(1)-dependent behavioral effects that mirror those observed with CB(1) agonists. Arachidonic acid levels are decreased by the organophosphorus agents in amounts equivalent to elevations in 2-AG, which indicates that endocannabinoid and eicosanoid signaling pathways may be coordinately regulated in the brain.
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- 2008
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247. Electron Emission Characteristics of Au-covered Tungsten<111> Nanotips
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Chuhei Oshima, T. T. Tsong, Eiji Rokuta, Hong Shi Kuo, K. Nomura, and T. Itagaki
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Materials science ,chemistry.chemical_element ,Bioengineering ,Nanotechnology ,Surfaces and Interfaces ,Electron ,Tungsten ,Condensed Matter Physics ,Surfaces, Coatings and Films ,Field emission microscopy ,chemistry ,Mechanics of Materials ,Field ion microscope ,Biotechnology - Published
- 2008
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248. Nanotechnology studies of layered fluoride superionic conductors
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K. Nomura and Michisuke Kobayashi
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Materials science ,Condensed matter physics ,General Chemical Engineering ,Superlattice ,Diffusion ,General Engineering ,Physics::Optics ,General Physics and Astronomy ,Ion ,chemistry.chemical_compound ,Lattice constant ,chemistry ,Fast ion conductor ,Ionic conductivity ,General Materials Science ,Electrical conductor ,Fluoride - Abstract
A computer simulation by a molecular dynamics method at constant volume has been performed on a model material that is composed of accumulating two different fluoride conductors: ⋯BaF2–CaF2–BaF2–CaF2⋯. The average value of CaF2 and BaF2 for the lattice constant of the new layered material is prepared to hold its mechanical strength. The CaF2 region is compressed and the BaF2 region is stretched along the c axis (z axis) in the thermal equilibrium state. It is obtained that the diffusion coefficient and ionic conductivity of F − ions in the layered fluoride conductors increases with decreasing periods, more specifically with the number of interfaces. The layer depth dependence on transport coefficients approximately coincides with the experiment.
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- 2007
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249. Haplotype-Based Analysis of Genes Associated With Risk of Adverse Skin Reactions After Radiotherapy in Breast Cancer Patients
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Kenji Sekiguchi, Tomo Suga, Yoshimi Otsuka, Naohito Yamamoto, Masashi Sagara, Jun Ohashi, Keizen Sho, Yuzou Kikuchi, Hirohiko Tsujii, Shigeru Yamada, Mayumi Iwakawa, Atsuko Ishikawa, Takashi Imai, Shuhei Noda, Shinji Yoshinaga, K. Nomura, Yuichi Michikawa, Yuta Shibamoto, Masakazu Kohda, Jun-etsu Mizoe, Motoko Omura, and Yoshihiro Ogawa
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Adult ,Genetic Markers ,Oncology ,Cancer Research ,medicine.medical_specialty ,Pathology ,Breast Neoplasms ,Single-nucleotide polymorphism ,Polymorphism, Single Nucleotide ,Radiation Tolerance ,Breast cancer ,Internal medicine ,Genetic variation ,Odds Ratio ,medicine ,Humans ,SNP ,Radiology, Nuclear Medicine and imaging ,Radiation Injuries ,Alleles ,Aged ,Skin ,Genetic association ,Aged, 80 and over ,Chi-Square Distribution ,Radiation ,business.industry ,Haplotype ,Genetic Variation ,Odds ratio ,Middle Aged ,medicine.disease ,Confidence interval ,Haplotypes ,Female ,business - Abstract
Purpose: To identify haplotypes of single nucleotide polymorphism markers associated with the risk of early adverse skin reactions (EASRs) after radiotherapy in breast cancer patients. Methods and Materials: DNAwas sampled from 399 Japanese breast cancer patients who qualified for breast-conservingradiotherapy.UsingtheNationalCancerInstitute-CommonToxicityCriteriascoringsystem,version2,the patients were grouped according to EASRs, defined as those occurring within 3 months of starting radiotherapy (Grade 1 or less, n = 290; Grade 2 or greater, n = 109). A total of 999 single nucleotide polymorphisms from 137 candidategenesforradiationsusceptibilityweregenotyped,andthehaplotypeassociationsbetweengroupswereassessed. Results: The global haplotype association analysis (p < 0.05 and false discovery rate < 0.05) indicated that estimated haplotypes in six loci were associated with EASR risk. A comparison of the risk haplotype with the most frequent haplotype in each locus showed haplotype GGTT in CD44 (odds ratio [OR] = 2.17; 95% confidence interval [CI], 1.07‐4.43) resulted in a significantly greater EASR risk. Five haplotypes, CG in MAD2L2 (OR = 0.55; 95% CI, 0.35‐0.87), GTTG in PTTG1 (OR = 0.48; 95% CI, 0.24‐0.96), TCC (OR = 0.48; 95% CI, 0.26‐ 0.89) and CCG (OR = 0.50; 95% CI, 0.27‐0.92) in RAD9A, and GCT in LIG3 (OR = 0.46; 95% CI, 0.22‐0.93) were associated with a reduced EASR risk. No significant risk haplotype was observed in REV3L. Conclusion: Individual radiosensitivity can be partly determined by these haplotypes in multiple loci. Ourfindings may lead to a better understanding of the mechanisms underlying the genetic variation in radiation sensitivity and resistance among breast cancer patients. 2007 Elsevier Inc. Radiosensitivity, Single nucleotide polymorphism, SNP, Haplotype, Early adverse skin reaction.
- Published
- 2007
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250. c-Jun N-terminal kinase inhibitor SP600125 modulates the period of mammalian circadian rhythms
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P. Molyneux, K. Nomura, Mary E. Harrington, M. Chansard, and Chiaki Fukuhara
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Periodicity ,medicine.medical_specialty ,Luminescence ,Cell Survival ,Period (gene) ,Circadian clock ,Mice, Transgenic ,Biology ,Pineal Gland ,RAR-related orphan receptor alpha ,Article ,Mice ,Genes, Reporter ,Internal medicine ,medicine ,Animals ,Circadian rhythm ,Enzyme Inhibitors ,Phosphorylation ,Eye Proteins ,Luciferases ,Anthracenes ,Mammals ,Suprachiasmatic nucleus ,General Neuroscience ,JNK Mitogen-Activated Protein Kinases ,Period Circadian Proteins ,Circadian Rhythm ,Rats ,Isoenzymes ,CLOCK ,Endocrinology ,Light effects on circadian rhythm ,Suprachiasmatic Nucleus - Abstract
Circadian rhythms are endogenous cycles with periods close to, but not exactly equal to, 24 h. In mammals, circadian rhythms are generated in the suprachiasmatic nucleus (SCN) of the hypothalamus as well as several peripheral cell types, such as fibroblasts. Protein kinases are key regulators of the circadian molecular machinery. We investigated the role of the c-Jun N-terminal kinases (JNK), which belong to the mitogen-activated protein kinases family, in the regulation of circadian rhythms. In rat-1 fibroblasts, the p46 kDa, but not the p54 kDa, isoforms of JNK expressed circadian rhythms in phosphorylation. The JNK-inhibitor SP600125 dose-dependently extended the period of Period1-luciferase rhythms in rat-1 fibroblasts from 24.23+/-0.17-31.48+/-0.07 h. This treatment also dose-dependently delayed the onset of the bioluminescence rhythms. The effects of SP600125 on explant cultures from Period1-luciferase transgenic mice and Period2(Luciferase) knockin mice appeared tissue-specific. SP600125 lengthened the period in SCN, pineal gland, and lung explants in Period1-luciferase and Period2(Luciferase) mice. However, in the kidneys circadian rhythms were abolished in Period1-luciferase, while circadian rhythms were not affected by SP600125 treatment in Period2(Luciferase) mice. Valproic acid, already known to affect period length, enhanced JNK phosphorylation and, as predicted, shortened the period of the Period1-bioluminescence rhythms in rat-1 fibroblasts. In conclusion, our results showed that SP600125 treatment, as well as valproic acid, alters JNK phosphorylation levels, and modulates the period length in various tissues. We conclude that JNK phosphorylation levels may help to set the period length of mammalian circadian rhythms.
- Published
- 2007
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